Citrus Sinensis ID: 011316

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHcHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHcccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
mlwcwidcfvcfsllkpmdpMFFIIQLQLESLPAMVAgvwsddrniqLDATTQFRKLLSiersppineviqsgvvprfieflsrddfpqLQFEAAWALTniasgtsentrvvidhgAVPIFVRLlssptddvREQAVWALGnvagdspkcrdlvlsngalmPLLAQFNEHAKLSMLRNATWTlsnfcrgkpqplfeqtrpalpaLERLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellrhpspsvlipalrtvgnivtgddmqtqciinhqalPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISnatsggsneQIKFLVSqgcikplcdllncpdpriVTVCLEGLENILKAGEAeknmgntggvNLFAQAIDDAEGLEKIEnlqshdntEIYEKAVKILETYwveededeplppgdatqagfgfagnglpvpsggfnfg
Flexible Loop (DISEMBL)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLlsiersppineviqsGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAlgnvagdspKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLrhpspsvlipALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEnlqshdnteiYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Low Complexity Region (SEG)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNqiqaiieagiigPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVeededeplppgdATQAGFGFAGNGLPVPSGGFNFG
Disordered region (IsUnstruct)
*LWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE**********************************
Disordered Region (DISOPRED)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLP**********************FNF*
Disordered Region (DISEMBL)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Disordered Region (DISPRO)
MLWCWIDCFVCFSLLKPMD*MFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE*****LPP*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
O22478	527	Importin subunit alpha OS	N/A	no	0.936	0.867	0.822	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.948	0.870	0.8	0.0
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.946	0.865	0.806	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.887	0.823	0.852	0.0
O04294	531	Importin subunit alpha-2	no	no	0.934	0.858	0.755	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.907	0.858	0.626	1e-158
O35345	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.608	1e-145
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.608	1e-144
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.606	1e-144
O60684	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.606	1e-144

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/461 (82%), Positives = 420/461 (91%), Gaps = 4/461 (0%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           +LE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPRF+EFL+RDD+
Sbjct: 71  KLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDY 130

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAVWALGN+AGDS
Sbjct: 131 PQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDS 190

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           PK RDLVL +GAL+ LLAQFNE AKLSMLRNATWTLSNFCRGKPQPLFEQT+ ALP L R
Sbjct: 191 PKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGR 250

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPSVLIPALRTVG
Sbjct: 251 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVG 310

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
           NIVTGDD+QTQ +I+H ALPCL++LLTQNYKKSIKKEACWTISNITAGN NQIQ +IEAG
Sbjct: 311 NIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAG 370

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
           II PLV LL NAEFEIKKEAAWAISNATSGG+++QIKFLVSQGCIKPLCDLL CPDPRIV
Sbjct: 371 IIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIV 430

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447
           TVCLEGLENILK GEA+K++GNT GVN++AQ ID+AEGLEKIENLQSHDNTEIYEKAVKI
Sbjct: 431 TVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKI 490

Query: 448 LETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           LETYW+EE ED P+      +  F F G  + +PSGGFNF 
Sbjct: 491 LETYWLEE-EDVPV---SLNEDQFEFGGADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.
Solanum lycopersicum (taxid: 4081)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/465 (80%), Positives = 420/465 (90%), Gaps = 2/465 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +  +L+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF+EFL +
Sbjct: 67  VDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKK 126

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALGNVA
Sbjct: 127 EDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVA 186

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALPA
Sbjct: 187 GDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPA 246

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           LERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALR
Sbjct: 247 LERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALR 306

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +QIQ ++
Sbjct: 307 TVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVV 366

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           EA +I PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCDLL CPDP
Sbjct: 367 EANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDP 426

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN EIYEKA
Sbjct: 427 RIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKA 486

Query: 445 VKILETYWVEEDEDEP-LPPG-DATQAGFGFAGNGLPVPSGGFNF 487
           VKILETYW+EE++DE   PPG D +QAGF F GN  PVPSGGFNF
Sbjct: 487 VKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/464 (80%), Positives = 413/464 (89%), Gaps = 2/464 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +Q +LE LPAMV  V SDD  +QL+ATTQFRKLLSIERSPPI EVI +GVVPRFI FL R
Sbjct: 73  LQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQR 132

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DVREQAVWALGNVA
Sbjct: 133 EDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVA 192

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL++G L PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP FEQ +PAL A
Sbjct: 193 GDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSA 252

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L+RLIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL HPS SVLIPALR
Sbjct: 253 LQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALR 312

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDDMQTQC+I+HQALPCLL+LLT N+KKSIKKEACWTISNITAGN  QIQA+I
Sbjct: 313 TVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVI 372

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
            A II PLV+LL  AEF+IKKEAAWAISNATSGG+++QIK+LV+QGCIKPLCDLL CPDP
Sbjct: 373 NANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDP 432

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GEAEKN+G  G VN +AQ IDDAEGLEKIENLQSHDNTEIYEKA
Sbjct: 433 RIVTVCLEGLENILKVGEAEKNLG-AGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKA 491

Query: 445 VKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           VK+LE+YW+EE ED+ +P GD  Q GF F      VPSGGFNFG
Sbjct: 492 VKMLESYWLEE-EDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG 534

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/434 (85%), Positives = 403/434 (92%), Gaps = 1/434 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +  +LESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R
Sbjct: 67  VDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR 126

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVA
Sbjct: 127 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 186

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPA
Sbjct: 187 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 246

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 247 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 306

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +QIQA+I
Sbjct: 307 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 366

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
            AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD 
Sbjct: 367 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 426

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKA
Sbjct: 427 RIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 485

Query: 445 VKILETYWVEEDED 458
           VKILE YW++E++D
Sbjct: 486 VKILEAYWMDEEDD 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/458 (75%), Positives = 401/458 (87%), Gaps = 2/458 (0%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVVPR ++FLSRDDFP+
Sbjct: 75  DNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPK 134

Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAGDSPK
Sbjct: 135 LQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPK 194

Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 209
           CRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P FEQT+PALP LERL+
Sbjct: 195 CRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLV 254

Query: 210 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269
            S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H SPSVLIPALRT+GNI
Sbjct: 255 QSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNI 314

Query: 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329
           VTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAGN +QIQA+I+AGII
Sbjct: 315 VTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGII 374

Query: 330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389
             LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPLCDLL CPD ++VTV
Sbjct: 375 QSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTV 434

Query: 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
           CLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAVKILE
Sbjct: 435 CLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILE 494

Query: 450 TYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           T+W E++E+E      A Q+GF F      VP G FNF
Sbjct: 495 TFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  558 bits (1437), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/453 (62%), Positives = 351/453 (77%), Gaps = 10/453 (2%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           +I  +LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL 
Sbjct: 61  LINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLY 120

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
             DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+
Sbjct: 121 MQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNI 180

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPA 201
           AGDS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +
Sbjct: 181 AGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRAS 240

Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
           LP L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  P
Sbjct: 241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTP 300

Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321
           ALRT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ NQIQ
Sbjct: 301 ALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQ 359

Query: 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381
            +I+A II  LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL  
Sbjct: 360 QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKV 419

Query: 382 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
            DPRI+ V LEG+ENIL AG+ E       GVN + + I+DA+GL KI +LQ H N + +
Sbjct: 420 SDPRIINVALEGIENILVAGKKE---AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query: 442 EKAVKILETYWVEEDEDEPLPPGDATQAGFGFA 474
           EK  +I+ TY  +E EDE    GD    G  F+
Sbjct: 477 EKVSRIISTYLEDEQEDE----GDLMPEGSSFS 505

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  515 bits (1327), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 328/442 (74%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQESKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 328/442 (74%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 327/442 (73%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 327/442 (73%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
255548535	454	importin alpha, putative [Ricinus commun	0.930	1.0	0.881	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.946	0.870	0.868	0.0
224128392	538	predicted protein [Populus trichocarpa]	0.940	0.853	0.863	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.948	0.870	0.858	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.948	0.870	0.858	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.946	0.873	0.859	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.940	0.867	0.863	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.948	0.871	0.862	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.948	0.871	0.859	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.942	0.869	0.854	0.0

>gi|255548535|ref|XP_002515324.1| importin alpha, putative [Ricinus communis] gi|223545804|gb|EEF47308.1| importin alpha, putative [Ricinus communis]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/454 (88%), Positives = 429/454 (94%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94
           MVAGVWS+D+N QL+ATT FRKLLSIERSPPINEV+QSGVVPRFIEFL+RDDFPQLQFEA
Sbjct: 1   MVAGVWSEDKNAQLEATTHFRKLLSIERSPPINEVVQSGVVPRFIEFLARDDFPQLQFEA 60

Query: 95  AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154
           AWALTNIASGTSENT+VVIDHGAVPIF++LLSSPTDDVREQAVWALGN+AGDSPKCRD V
Sbjct: 61  AWALTNIASGTSENTKVVIDHGAVPIFIKLLSSPTDDVREQAVWALGNIAGDSPKCRDFV 120

Query: 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 214
           L +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP FEQT+PALPALERLIHSND+
Sbjct: 121 LGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPSFEQTKPALPALERLIHSNDE 180

Query: 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP+VLIPALRTVGNIVTGDD
Sbjct: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDD 240

Query: 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 334
           MQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISNITAGNVNQIQAII+A +IGPL+ 
Sbjct: 241 MQTQCMINHQALPCLLNLLTHNYKKSIKKEACWTISNITAGNVNQIQAIIDADLIGPLIQ 300

Query: 335 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
           LL  AEFEIKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRIVTVCLEGL
Sbjct: 301 LLQIAEFEIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGL 360

Query: 395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454
           ENILK GEAEKN+GNTG  NL+AQ ID+AEGLEKIENLQSHDN +IYEKAVKILETYW+E
Sbjct: 361 ENILKVGEAEKNLGNTGDANLYAQMIDEAEGLEKIENLQSHDNNDIYEKAVKILETYWLE 420

Query: 455 EDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           EDEDE L P DA+Q+GF F GN +P PSGGF FG
Sbjct: 421 EDEDEALAPADASQSGFHFGGNEVPAPSGGFKFG 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/465 (86%), Positives = 437/465 (93%), Gaps = 3/465 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           ++ +LE LP+MVAGVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+EFL R
Sbjct: 67  VEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMR 126

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV+LL+SP+DDVREQAVWALGNVA
Sbjct: 127 EDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 186

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ +PALPA
Sbjct: 187 GDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQVKPALPA 246

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 247 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 306

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDDMQTQCIINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+I
Sbjct: 307 TVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVI 366

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           EA IIGPLV+LL NAEF+IKKEAAWAISNATSGG+++QIK+LVSQGCIKPLCDLL CPDP
Sbjct: 367 EANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLICPDP 426

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNT-GGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           RIVTVCLEGLENILK GEA+KN+GN  GGVNL+AQ IDDAEGLEKIENLQSHDN EIYEK
Sbjct: 427 RIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHDNIEIYEK 486

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 487
           AVKILETYW+EE EDE +PPGDA+Q+GF F G+ +P +PSGGFNF
Sbjct: 487 AVKILETYWLEE-EDETMPPGDASQSGFQFGGSDMPTIPSGGFNF 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128392|ref|XP_002320318.1| predicted protein [Populus trichocarpa] gi|222861091|gb|EEE98633.1| predicted protein [Populus trichocarpa]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/460 (86%), Positives = 429/460 (93%), Gaps = 1/460 (0%)

Query: 29  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP 88
           L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQSGVVPRFIEFL+RDDFP
Sbjct: 78  LDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQSGVVPRFIEFLARDDFP 137

Query: 89  QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148
           QLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +DVREQAVWALGNVAGDSP
Sbjct: 138 QLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAEDVREQAVWALGNVAGDSP 197

Query: 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 208
           KCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF+QT+PALPALERL
Sbjct: 198 KCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFDQTKPALPALERL 257

Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           IHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELLRH SP+VLIPALR VGN
Sbjct: 258 IHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELLRHQSPTVLIPALRAVGN 317

Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           IVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN+TAGN NQIQA++EAGI
Sbjct: 318 IVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISNVTAGNANQIQAVLEAGI 377

Query: 329 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           IGPLV LL NAEFEIKKEAAWAISNATSGGS+EQIKFLV QGCIKPLCDLL CPDPRIVT
Sbjct: 378 IGPLVQLLQNAEFEIKKEAAWAISNATSGGSHEQIKFLVDQGCIKPLCDLLICPDPRIVT 437

Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           VCLEGLENILK GEA+KN+GNTG  NL+ Q I+D EGLEKIENLQSHDN EIYEKAVKIL
Sbjct: 438 VCLEGLENILKVGEAKKNLGNTGNANLYTQMIEDVEGLEKIENLQSHDNNEIYEKAVKIL 497

Query: 449 ETYWVEEDED-EPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           ET+WVE+ +D E  PPGDA+Q+GF F G  +PV S GF F
Sbjct: 498 ETFWVEDGDDFEAFPPGDASQSGFQFGGTEVPVSSNGFKF 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/465 (85%), Positives = 434/465 (93%), Gaps = 2/465 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           +++ +LE LP+MV GVW+DD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVV RF+EFL 
Sbjct: 68  LVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLM 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALP
Sbjct: 188 AGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           AL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPAL
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVSQGCIKPLCDLL CPD
Sbjct: 368 IEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEKIENLQSHDNTEIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 487
           AVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 488 AVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPTVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/465 (85%), Positives = 434/465 (93%), Gaps = 2/465 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           +++ +LE LP+MV GVW+DD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVV RF+EFL 
Sbjct: 68  LVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLM 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALP
Sbjct: 188 AGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           AL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPAL
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVSQGCIKPLCDLL CPD
Sbjct: 368 IEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEKIENLQSHDNTEIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 487
           AVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 488 AVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPAVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/463 (85%), Positives = 429/463 (92%), Gaps = 1/463 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           ++ +LESLP+MV+GVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+E L R
Sbjct: 68  MEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVELLVR 127

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAVWALGNVA
Sbjct: 128 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVA 187

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQPLFE+ RPALPA
Sbjct: 188 GDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPALPA 247

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           LERL+HS D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVL+PALR
Sbjct: 248 LERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALR 307

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDDMQTQCIIN  ALPCLL LLT N+KKSIKKEACWTISNITAGN  QIQA+I
Sbjct: 308 TVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVI 367

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           EAG+IGPLVNLL NAEF+IKKEAAWA+SNATSGG++EQIKFLVSQGCIKPLCDLL CPDP
Sbjct: 368 EAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDP 427

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GEAEKN+GN+G VN +AQ IDDAEGLEKIENLQSHDN EIYEKA
Sbjct: 428 RIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKA 487

Query: 445 VKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           VKILETYW+EED DE LP GD  Q GF F  N + VPSGGFNF
Sbjct: 488 VKILETYWLEED-DEALPSGDGAQQGFHFGENNVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/460 (86%), Positives = 431/460 (93%), Gaps = 1/460 (0%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           +LE LP+MVAGVW++D N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF++FL R+DF
Sbjct: 70  KLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVQFLMREDF 129

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           PQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVWALGNVAGDS
Sbjct: 130 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAVWALGNVAGDS 189

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           P+CRDLVL NGAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q +PALPAL R
Sbjct: 190 PRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAR 249

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVG
Sbjct: 250 LIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 309

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
           NIVTGDDMQTQCIINHQALPCLL+LL  NYKKSIKKEACWTISNITAGN  QIQA+IEA 
Sbjct: 310 NIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNKEQIQAVIEAN 369

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
           IIGPLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRIV
Sbjct: 370 IIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCDLLICPDPRIV 429

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447
           TVCLEGLENILK GEA+KN+  TGGVNL+AQ IDDAEGLEKIENLQSHDNTEIYEKAVKI
Sbjct: 430 TVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKI 489

Query: 448 LETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           LETYW+EE EDE +PPGDA+Q+GF F G    VPSGGFNF
Sbjct: 490 LETYWLEE-EDETMPPGDASQSGFQFGGEAPAVPSGGFNF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/464 (86%), Positives = 431/464 (92%), Gaps = 1/464 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           I++ +LESLPAMVAGVWSDD + QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+EFL 
Sbjct: 68  IVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLV 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ R ALP
Sbjct: 188 AGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           ALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPSVLIPAL
Sbjct: 248 ALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAGN +QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           IEAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPD
Sbjct: 368 IEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEAEK++GNTG VNL+AQ ID+AEGLEKIENLQSHDN EIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           AVKILETYW+ ED+DE LP GD  Q GF F  N LPVPSGGFNF
Sbjct: 488 AVKILETYWL-EDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNF 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/464 (85%), Positives = 431/464 (92%), Gaps = 1/464 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           I++ +LESLPAMVAGVWSDD + QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+EFL 
Sbjct: 68  IVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLV 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ R ALP
Sbjct: 188 AGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           ALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPSVLIPAL
Sbjct: 248 ALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAGN +QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           +EAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPD
Sbjct: 368 VEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEAEK+MGN+G VNL+AQ ID+AEGLEKIENLQSHDN EIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           AVKILETYW+ ED+DE LP GD  Q GF F  N +PVPSGGFNF
Sbjct: 488 AVKILETYWL-EDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNF 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/461 (85%), Positives = 434/461 (94%), Gaps = 1/461 (0%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           +LE LP+MVAGVWS+D N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF++FL R+DF
Sbjct: 70  KLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVQFLMREDF 129

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           PQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAVWALGNVAGDS
Sbjct: 130 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAVWALGNVAGDS 189

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           P+CRDLVL +GAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q +PALPAL R
Sbjct: 190 PRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAR 249

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL+ELL HPSPSVLIPALRTVG
Sbjct: 250 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPSVLIPALRTVG 309

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
           NIVTGDDMQTQCIINHQ+LPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+IEA 
Sbjct: 310 NIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEAN 369

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
           +IGPLV+LL NAEF+IKKE+AWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRIV
Sbjct: 370 LIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIV 429

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447
           TVCLEGLENILK GEA+KN+ +TGGVNL+AQ IDDAEGLEKIENLQSHDN+EIYEKAVKI
Sbjct: 430 TVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDNSEIYEKAVKI 489

Query: 448 LETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           LETYW+EED DE +PPGDA+Q+GF F G+   VPSGGFNFG
Sbjct: 490 LETYWLEED-DETMPPGDASQSGFQFGGDAPAVPSGGFNFG 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.948	0.870	0.769	3.1e-193
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.956	0.872	0.771	6.5e-193
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.940	0.864	0.727	2.7e-180
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.948	0.858	0.724	5.5e-180
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.946	0.858	0.724	1.4e-176
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.848	0.797	0.649	4.2e-143
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.942	0.831	0.600	9.5e-137
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.868	0.821	0.625	4.1e-136
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.858	0.793	0.627	4.1e-136
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.918	0.813	0.605	1.4e-135

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1872 (664.0 bits), Expect = 3.1e-193, P = 3.1e-193
 Identities = 358/465 (76%), Positives = 401/465 (86%)

Query:    25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
             +  +L+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF+EFL +
Sbjct:    67 VDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKK 126

Query:    85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
             +D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALGNVA
Sbjct:   127 EDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVA 186

Query:   145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             GDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALPA
Sbjct:   187 GDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPA 246

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             LERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALR
Sbjct:   247 LERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALR 306

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             TVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +      
Sbjct:   307 TVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVV 366

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                   PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCDLL CPDP
Sbjct:   367 EANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDP 426

Query:   385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             RI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN EIYEKA
Sbjct:   427 RIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKA 486

Query:   445 VKILETYWVXXXXXXXXX--XXXATQAGFGFAGNGLPVPSGGFNF 487
             VKILETYW+               +QAGF F GN  PVPSGGFNF
Sbjct:   487 VKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1869 (663.0 bits), Expect = 6.5e-193, P = 6.5e-193
 Identities = 362/469 (77%), Positives = 402/469 (85%)

Query:    20 PMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI 79
             P    ++ +LESLPAMV GVWSDDR++QL+ATTQFRKLLSIERSPPI EVI +GVVPRF+
Sbjct:    67 PASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFV 126

Query:    80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWA 139
             EFL+R+D+PQLQFEAAWALTNIASGTSENT+VVI+HGAVPIFV+LL+S +DDVREQAVWA
Sbjct:   127 EFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWA 186

Query:   140 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 199
             LGNVAGDSP+CRDLVL  GAL+PLL+Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q R
Sbjct:   187 LGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVR 246

Query:   200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 259
             PALPALERLIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL+H SPSVL
Sbjct:   247 PALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVL 306

Query:   260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNX 319
             IPALR++GNIVTGDD+QTQC+I+H AL  LL LLT N+KKSIKKEACWTISNITAGN + 
Sbjct:   307 IPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQ 366

Query:   320 XXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 379
                        PLVNLL NAEF+IKKEAAWAISNATSGGS +QIK++V QG +KPLCDLL
Sbjct:   367 IQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLL 426

Query:   380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE 439
              CPDPRI+TVCLEGLENILK GEAEK  GNTG VN +AQ IDDAEGLEKIENLQSHDN+E
Sbjct:   427 VCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQSHDNSE 486

Query:   440 IYEKAVKILETYWVXXXXXXXXXXXXATQAGFGFAG-NGLPVPSGGFNF 487
             IYEKAVKILETYW+            + Q GF F G N   VP GGFNF
Sbjct:   487 IYEKAVKILETYWLEEEDETLPPGDPSAQ-GFQFGGGNDAAVPPGGFNF 534

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
 Identities = 336/462 (72%), Positives = 387/462 (83%)

Query:    26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
             QL+ ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVVPR ++FLSRD
Sbjct:    72 QLK-DNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRD 130

Query:    86 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
             DFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAG
Sbjct:   131 DFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAG 190

Query:   146 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 205
             DSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P FEQT+PALP L
Sbjct:   191 DSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVL 250

Query:   206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
             ERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H SPSVLIPALRT
Sbjct:   251 ERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRT 310

Query:   266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
             +GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAGN +       
Sbjct:   311 IGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVID 370

Query:   326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                   LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPLCDLL CPD +
Sbjct:   371 AGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLK 430

Query:   386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
             +VTVCLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAV
Sbjct:   431 VVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAV 490

Query:   446 KILETYWVXXXXXXXXXXXXATQAGFGFAGNGLPVPSGGFNF 487
             KILET+W             A Q+GF F      VP G FNF
Sbjct:   491 KILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1747 (620.0 bits), Expect = 5.5e-180, P = 5.5e-180
 Identities = 339/468 (72%), Positives = 389/468 (83%)

Query:    26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
             + +LE++  M+AGV S+DR++QL+AT  FR+LLSIER+PPINEV+QSGVVP  ++FLSRD
Sbjct:    72 ETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRD 131

Query:    86 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
             DF QLQFEAAWALTNIASGTSENTRV+ID GAVP+FV+LLSS +++VREQAVWALGNVAG
Sbjct:   132 DFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAG 191

Query:   146 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPA 204
             DSPKCRD VLS  A+M LLAQF+EH+KLSMLRNATWTLSNFCRGKPQP FEQ T+ ALPA
Sbjct:   192 DSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPA 251

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             LERL+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL HPSPSVLIPALR
Sbjct:   252 LERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALR 311

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             T+GNIVTGDD+QTQ +I+ QALP LL+LL   YKKSIKKEACWTISNITAGN +      
Sbjct:   312 TIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVF 371

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                   PL+NLL   EFEIKKEA WAISNATSGG+++QIKFLVSQGCI+PLCDLL CPDP
Sbjct:   372 QAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDP 431

Query:   385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             R+VTV LEGLENILK GEAEKN+GNTG  NL+AQ I+DA+GL+KIENLQSHDN EIYEKA
Sbjct:   432 RVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKA 491

Query:   445 VKILETYWVXXXXXXXXXXXXATQ----AGFGFAGNGLPVPSGGFNFG 488
             VKILE+YW             A +    +GF F       P+GGFNFG
Sbjct:   492 VKILESYWAADDEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNFG 539

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 337/465 (72%), Positives = 381/465 (81%)

Query:    25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
             ++ +LE +P MV GV+SDD   QL+ATTQFRKLLSIERSPPI+EVI++GV+PRF+EFL R
Sbjct:    74 VEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGR 133

Query:    85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
              D PQLQFEAAWALTN+ASGTS++TRVVI+ GAVPIFV+LL+S +DDVREQAVWALGNVA
Sbjct:   134 HDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVA 193

Query:   145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             GDSP CR+LVL+ GAL PLLAQ NE++KLSMLRNATWTLSNFCRGKP   FEQ +PALP 
Sbjct:   194 GDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI 253

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             L +LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL H SP+VLIPALR
Sbjct:   254 LRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALR 313

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             TVGNIVTGDD QTQ II    LP L +LLTQN+KKSIKKEACWTISNITAGN        
Sbjct:   314 TVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVV 373

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                   PLV+LL NAEF+IKKEAAWAISNATSGGS+EQI++LV+QGCIKPLCDLL CPDP
Sbjct:   374 GAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDP 433

Query:   385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             RIVTVCLEGLENILK GEA+K MG   GVNL+AQ I++++GL+K+ENLQSHDN EIYEKA
Sbjct:   434 RIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVENLQSHDNNEIYEKA 493

Query:   445 VKILETYWVXXXXXXXXXXXXA--TQAGFGFAGNGLPVPSGGFNF 487
             VKILE YW                +Q  F F GN    P GGF F
Sbjct:   494 VKILERYWAEEEEEQILQDGGNDNSQQAFNF-GNNPAAPVGGFKF 537

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 271/417 (64%), Positives = 329/417 (78%)

Query:    35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94
             M+ GV+SDD ++QL+ TT+FR +LS +RSPP + VI+SGVVPRF+EFL +DD P+LQFEA
Sbjct:    75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEA 134

Query:    95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154
             AWALTNIASG SE+T+VVIDHG VP+FV+LL+SP DDVREQA+W LGNVAGDS +CRD V
Sbjct:   135 AWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFV 194

Query:   155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 214
             L++GA +PLL Q N HA LS+LRNATWTLSNF RGKP P F+  +  LP L+RL++S+D+
Sbjct:   195 LNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDE 254

Query:   215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274
             +VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL+H SP VL+PALR +GNIV+G+ 
Sbjct:   255 QVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNS 314

Query:   275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVN 334
              QT C+IN   LP L DLLTQN+ + I++EACWTISNITAG                LVN
Sbjct:   315 QQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVN 374

Query:   335 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
             L  +AEF+IKKEA WAISNA+ GGS  QIK+LV Q CIK LCD+L CPD RI+ V L GL
Sbjct:   375 LAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGL 434

Query:   395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451
             E IL AGE +KN+ +   VN ++Q I+DAEGLEKIENLQ H N EIYEKAVKIL+TY
Sbjct:   435 EMILIAGEVDKNLRD---VNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 281/468 (60%), Positives = 334/468 (71%)

Query:    26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
             +L +E LP MV GV+SD    Q+ ATT+FRKLLS ER+PPI  VI++GVV RF+EFL R 
Sbjct:    79 ELNVE-LPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RS 136

Query:    86 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
                 +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV LLSSP  DVREQAVWALGN+AG
Sbjct:   137 PHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAG 196

Query:   146 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPA 204
             DSP+CRD VL+ GAL PLL   N+  K+SMLRNATWTLSNFCRGK PQP +    PALP 
Sbjct:   197 DSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPV 256

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             L +LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H S SV  PALR
Sbjct:   257 LAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALR 316

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             +VGNIVTGDD+QTQ IIN  ALP LL LL+   K  I+KEACWTISNITAGN +      
Sbjct:   317 SVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITAGNSSQIQSVI 375

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCP 382
                   PLV+LL N +F+ +KEA WAISNATSGG    +QI++LV+QGCIKPLCDLL CP
Sbjct:   376 DAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACP 435

Query:   383 DPRIVTVCLEGLENILKAGEAEKNMGNTGG-VNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
             D +I+ V L+GLENILK GE +K  G     VN +A  I++A G+EKI + Q++ N EIY
Sbjct:   436 DNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIY 495

Query:   442 EKAVKILETYWVXXXXXXXXXXXXATQ-AGFGFAGNGLPVPSGGFNFG 488
              KA  I+E Y+             A Q    GF         GGF+FG
Sbjct:   496 MKAYNIIEKYFSDEDEAAGDIDELAPQQTQTGFTLGATQQQPGGFSFG 543

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 269/430 (62%), Positives = 333/430 (77%)

Query:    24 IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
             +I  +LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL 
Sbjct:    61 LINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLY 120

Query:    84 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
               DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+
Sbjct:   121 MQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNI 180

Query:   144 AGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPA 201
             AGDS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +
Sbjct:   181 AGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRAS 240

Query:   202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
             LP L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  P
Sbjct:   241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTP 300

Query:   262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 321
             ALRT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ N   
Sbjct:   301 ALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQ 359

Query:   322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381
                       LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL  
Sbjct:   360 QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKV 419

Query:   382 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
              DPRI+ V LEG+ENIL AG+ E  +    GVN + + I+DA+GL KI +LQ H N + +
Sbjct:   420 SDPRIINVALEGIENILVAGKKEAQVT---GVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query:   442 EKAVKILETY 451
             EK  +I+ TY
Sbjct:   477 EKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 268/427 (62%), Positives = 321/427 (75%)

Query:    35 MVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFE 93
             +++ +WSD+R++ ++ATTQ R LL  E  +  + EVIQ+G+VPRF+EFL+ DD PQLQFE
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
             AAWALTNIASGTSENT VVIDHGAV I VRLL+SP D VREQ VWALGN++GDSP+CRD+
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 213
             VL + AL  LL Q N  AKLSML NA WTLSN CRGKPQP F+Q   ALPAL +LI  +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273
              E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT+GNIVTG+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLV 333
             D QTQ II+ QALPCL++LL  +Y K+I+KEACWT+SNITAG  +             LV
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   334 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393
             NLL N+E ++KKEAAWAI NA +GGS +QI FLV Q CIKPLCDLL C D ++V VCLE 
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   394 LENILKAGEAEKNMGNTG-------GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
             L+ ILK GE   +    G        VN  AQ I++AEGLEKIE LQSH+N +IYE AVK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   447 ILETYWV 453
             ILETYW+
Sbjct:   484 ILETYWM 490

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 279/461 (60%), Positives = 330/461 (71%)

Query:    30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
             E LP MV GV+S+  + Q+ ATT+FRKLLS ER+PPI EVI++GVV RF+EFL R     
Sbjct:    81 EDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTL 139

Query:    90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
             +QFEAAWALTNIASG++  T+VVI+ GAVPIFV LL SP  DVREQAVWALGN+AGDSP+
Sbjct:   140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQ 199

Query:   150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 208
             CRD VLS GAL PLL    +  KLSMLRNATWTLSNFCRGK PQP +    PALP L +L
Sbjct:   200 CRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKL 259

Query:   209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
             ++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S SV  PALR+VGN
Sbjct:   260 VYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 319

Query:   269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
             IVTGDD+QTQ IIN  ALPCLL LL  N K  I+KEACWTISNITAGN            
Sbjct:   320 IVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANI 378

Query:   329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
               PL++LL N + + +KEA WAISNATSGG    +QI++LV+QGCIKPLCDLL+CPD +I
Sbjct:   379 IPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKI 438

Query:   387 VTVCLEGLENILKAGEAEKNMGNTG--GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             + V L+GLENILK G+ +K     G   +N +A  I++  G+EKI   Q++ N EIY KA
Sbjct:   439 IQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKA 498

Query:   445 VKILETYWVXXXXXXXXXXXXATQAG-FGFAGNGLPVPSGG 484
               I+E Y+                 G FGF GN    PSGG
Sbjct:   499 FNIIEKYFSDDDENADDAAPAQGPNGTFGF-GN----PSGG 534

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.6085	0.8954	0.8152	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4672	0.8975	0.8521	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.6063	0.8954	0.8152	yes	no
O04294	IMA2_ARATH	No assigned EC number	0.7554	0.9344	0.8587	no	no
Q02821	IMA1_YEAST	No assigned EC number	0.5617	0.9344	0.8413	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.8	0.9487	0.8703	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5520	0.9344	0.8460	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6269	0.9077	0.8585	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.8221	0.9364	0.8671	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.6063	0.8954	0.8152	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.6085	0.8954	0.8152	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8525	0.8872	0.8231	no	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.8060	0.9467	0.8651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-33
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-21
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-10
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-09
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-05
pfam04826	254	pfam04826, Arm_2, Armadillo-like	1e-04
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	2e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	4e-04
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	5e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-04
pfam01749	97	pfam01749, IBB, Importin beta binding domain	7e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.001
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.001

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  566 bits (1461), Expect = 0.0
 Identities = 261/465 (56%), Positives = 322/465 (69%), Gaps = 9/465 (1%)

Query: 26  QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
           Q     LP +   ++SDD   QL A  +FRKLLS E SPPI  VI +GVVPRF+EF+   
Sbjct: 67  QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI 126

Query: 86  DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
               LQFEAAWALTNIASGT++ T+VV+D GAVP+F++LLSS  DDVREQAVWALGN+AG
Sbjct: 127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG 186

Query: 146 DSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALP 203
           DS  CRD VL  GAL PLL      A  +SMLRNATWTLSN CRGK P P +     ALP
Sbjct: 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALP 246

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
            L +LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  PAL
Sbjct: 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           R+VGNIVTG D QTQ IIN  AL     LL+ + K++I+KEACWTISNITAGN  QIQA+
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAV 365

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNC 381
           I+A +I PL++LL +AE++IKKEA WAISNATSGG N  + I++LVSQG IKPLCDLL+ 
Sbjct: 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV 425

Query: 382 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
            D +I+ V L+ +ENILK GE ++       +N++A  ++ A G++ I  LQ   N  IY
Sbjct: 426 VDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIY 484

Query: 442 EKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFN 486
           +KA  I+E ++ EED  + L P  A    F F  N      G FN
Sbjct: 485 DKAYSIIEKFFGEEDAVDELAPETAGNT-FTFGSN--VNQQGNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  120 bits (303), Expect = 9e-33
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 68  EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 127
            VIQ+G +P  +  LS  D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL S
Sbjct: 2   AVIQAGGLPALVSLLSSSDEN-VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187
             ++V + A+WAL N+A      + +VL  G + P L    + +   + +NAT  LSN  
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 188 R 188
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (296), Expect = 1e-31
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P LV+LL+     V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
            AL  + N+  G +     ++    +P L++LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 93.1 bits (232), Expect = 8e-23
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           +A+I+AG +  LV+LL +++  +++EAAWA+SN ++G +N+ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
             D  +V   L  L N+              G       + +A G+ K+ NL    N +I
Sbjct: 60  SEDEEVVKAALWALRNL------------AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI 107

Query: 441 YEKAVKILETYW 452
            + A   L    
Sbjct: 108 QKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 339
           +I    LP L+ LL+ +  +++++EA W +SN++AGN + IQA++EAG +  LV LL + 
Sbjct: 3   VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 340 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           + E+ K A WA+ N  +G  +     ++  G +  L +LL+  +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.8 bits (218), Expect = 6e-21
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           Q   LPA+V+ + S D N+Q +A      L S   +  I  V+++G +P  ++ L  +D 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED- 62

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
            ++   A WAL N+A+G  +N  +V++ G VP  V LL S  +D+++ A  AL N+A
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           + EN + VI+ GAVP  V+LLSSP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
             EN + V+D G +P  V LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356
           +    QA+IEAG + PLV LL + + E+++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
            +++  AA AL  +A G  E  R  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
            ++  QAV++AG  P LVELL+     V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 62  RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103
                  V+ +G +P  +E L  +D  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 63  SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103
                 VI++G VP  ++ LS  D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.1 bits (108), Expect = 8e-07
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356
             QA+++AG +  LV LL + + E+ KEAAWA+SN +S
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
                Q +I   A+P L+ LL+    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
            +E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +   +E L  D  P+++  AA AL  +            D  A+P  + LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 135 QAVWALGNVAGDS 147
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
           DD   Q +++   LP L++LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           S E  + ++  G + PL  LL+ PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSD 229
           A+P L +L+ S D+EV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSD 229
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|218281 pfam04826, Arm_2, Armadillo-like

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338
            ++    L  LL LL       I + A  T+ N  A + NQ   I + G I  + NLL N
Sbjct: 7   DVLEPHDLQKLLALLESTEDPFIHEIALITLGNSAAYSFNQ-DIIRDLGGIPIIANLLSN 65

Query: 339 AEFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
              EIK++A  A++N +    N ++IK  V+Q C   +   LN        V L GL
Sbjct: 66  PNPEIKEKALNALNNLSVNVENQKKIKVYVNQVCEDIVSSPLNSA------VQLAGL 116

This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors. Length = 254

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 50/309 (16%)

Query: 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLV--LSNGALMPLLAQFN 168
           ++    VP    LLS     V   AV  L  +   D      L+  L    L  LL   N
Sbjct: 147 LVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVR-RLCNLLTVCN 205

Query: 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228
              ++ +LR     L+ +    P+      +  L  +  L+ ++++ VL +A   + +L 
Sbjct: 206 PWLQVKILR----LLTRYAPQDPRE----PKELLEDILNLLQNSNNAVLYEAVKTIIHL- 256

Query: 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-------DMQTQCII 281
           D   + I   + A     L  LL  P  ++   ALR +  I+          D+   C+ 
Sbjct: 257 DPEPELIVLAVNA-----LGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLK 311

Query: 282 NHQ-------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAIIEAGI---- 328
                     AL  L  L+ ++  K I KE    +S I         ++AI         
Sbjct: 312 TDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPT 371

Query: 329 -----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCP 382
                I  L+ LL  A   +  E    I +        + ++++       LC+LL +  
Sbjct: 372 DAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPELR-EYILEH-----LCELLEDIE 425

Query: 383 DPRIVTVCL 391
            P      L
Sbjct: 426 SPEARAAAL 434

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 62/314 (19%), Positives = 94/314 (29%), Gaps = 64/314 (20%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
                ++ L  +D   ++  AA AL  + S             AVP+   LLS     VR
Sbjct: 44  AADELLKLLEDEDLL-VRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVR 91

Query: 134 EQAVWALGNVAGDSPKCRDLV--LSN--------------------GALMPLLAQFNEHA 171
           + A  ALG + GD      LV  L N                     AL PLL    +  
Sbjct: 92  DAAADALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDED 150

Query: 172 KLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230
             S        L +      + L E     A+P L  L+   D +V      A S L   
Sbjct: 151 SGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVR---RAAASALGQL 207

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC----------- 279
            ++ ++A         LV+ L   S  V   AL  +G I   + +               
Sbjct: 208 GSENVEAA------DLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILA 261

Query: 280 --------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331
                    ++       L LL  +   +++ EA   +  I          +        
Sbjct: 262 LLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVAALLLALEDGDAD 321

Query: 332 LVNLLLNAEFEIKK 345
           +    L     I K
Sbjct: 322 VRKAALILLEGIDK 335

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 203 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 262
             LE L+   D EV   A  AL  L D               P L+ELL+ P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310
              +G +  GD          +ALP LL+LL  +    ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 21/158 (13%)

Query: 78  FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 137
           +I  L  D    L++   ++L     GT  N  VV     +   V   S   DDVR  AV
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTG-NLGVVST--LLHYAV---SDGNDDVRRAAV 573

Query: 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 197
            ALG V      C D  L  G +  L    N H +          L   C G        
Sbjct: 574 IALGFVC-----CDDRDLLVGTVELLSESHNFHVRAG----VAVALGIACAGT------G 618

Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235
            + A   LE L++  +D V   A  A+  +    N ++
Sbjct: 619 DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656

Length = 926

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188
           SP+ +  V+  GA+ P L Q        +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 132 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186
           VRE A  ALG +AG  P    L  +   L+P L    +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 13/37 (35%)

Query: 17 PMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQ 53
                         LP MV GV SDD   QL AT  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227
             A   L     G P+ L       LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-V 132
            +P  +E L +D  P+++  AA AL  +            D  A+P  + LL    D  V
Sbjct: 32  ALPALLELL-KDPDPEVRRAAAEALGKLG-----------DPEALPALLELLQDDDDAVV 79

Query: 133 REQAVWALG 141
           R  A  AL 
Sbjct: 80  RAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.93
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.86
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.81
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.8
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.78
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.76
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.76
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.73
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.73
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.72
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.71
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.68
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.68
PRK09687	280	putative lyase; Provisional	99.67
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
PRK09687	280	putative lyase; Provisional	99.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.58
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.58
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.5
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.49
PTZ00429	746	beta-adaptin; Provisional	99.49
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.46
PTZ00429	746	beta-adaptin; Provisional	99.46
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.45
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.44
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.43
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.41
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.35
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.3
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.28
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.19
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.19
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.18
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.18
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.17
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.14
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.12
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.11
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.1
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.08
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.05
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.02
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.02
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.98
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.95
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.94
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.94
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.92
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.89
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.87
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.82
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.81
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.8
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.8
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.8
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.77
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.77
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.74
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.73
PF05536	543	Neurochondrin: Neurochondrin	98.72
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.72
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.65
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.65
COG5369	743	Uncharacterized conserved protein [Function unknow	98.65
COG5369	743	Uncharacterized conserved protein [Function unknow	98.65
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.64
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.63
TIGR02270	410	conserved hypothetical protein. Members are found	98.59
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.58
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.56
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.54
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.53
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.52
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.51
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.5
TIGR02270	410	conserved hypothetical protein. Members are found	98.49
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.46
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.42
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.41
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.36
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.36
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.34
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.33
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.28
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.25
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.21
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.21
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.2
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.18
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.14
PF05536	543	Neurochondrin: Neurochondrin	98.14
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.14
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.11
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.11
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.07
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.07
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.04
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.03
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.01
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.97
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.95
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.92
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.89
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.87
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.85
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.84
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.82
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.77
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.77
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.74
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.71
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.69
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.6
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.59
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.55
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.54
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.54
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.53
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.52
KOG0567	289	consensus HEAT repeat-containing protein [General	97.51
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.49
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.48
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.46
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.46
KOG0567	289	consensus HEAT repeat-containing protein [General	97.4
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.39
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.38
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.37
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.33
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.31
PF05004	309	IFRD: Interferon-related developmental regulator (	97.3
PF05004	309	IFRD: Interferon-related developmental regulator (	97.26
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.26
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.25
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.24
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.22
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.18
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.17
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.11
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.09
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.07
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.06
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.06
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.04
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.0
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.95
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.94
KOG2025	892	consensus Chromosome condensation complex Condensi	96.93
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.91
PRK14707	2710	hypothetical protein; Provisional	96.86
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.8
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.71
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.7
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.63
KOG2956	516	consensus CLIP-associating protein [General functi	96.6
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.59
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.58
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.57
KOG3036	293	consensus Protein involved in cell differentiation	96.53
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.47
KOG1243	690	consensus Protein kinase [General function predict	96.37
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.37
KOG1243	690	consensus Protein kinase [General function predict	96.35
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.28
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.23
PRK14707	2710	hypothetical protein; Provisional	96.23
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.16
KOG3036	293	consensus Protein involved in cell differentiation	96.13
KOG2956	516	consensus CLIP-associating protein [General functi	96.09
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.98
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.97
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.96
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.95
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.94
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.92
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.91
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.81
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.76
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.72
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.65
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.64
KOG2025	892	consensus Chromosome condensation complex Condensi	95.61
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.6
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.52
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.51
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.46
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.42
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.37
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.36
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	95.36
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.28
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.13
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.09
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.07
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.06
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.06
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.05
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.98
KOG0413	1529	consensus Uncharacterized conserved protein relate	94.98
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.93
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.81
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.63
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.5
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.5
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.39
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.36
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.34
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.3
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.19
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.17
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.02
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.95
KOG2038	988	consensus CAATT-binding transcription factor/60S r	93.92
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.91
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.86
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.86
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	93.81
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.72
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.69
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.44
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.34
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.18
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.13
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.03
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.02
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	92.94
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.9
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	92.85
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.8
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.71
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	92.69
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.66
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.52
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.3
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.29
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.26
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	92.24
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	92.17
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	92.14
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.99
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	91.9
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.86
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.83
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.81
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	91.61
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	91.48
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.23
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.69
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.51
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.45
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.05
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	89.96
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.88
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	89.67
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.67
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.21
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.14
COG5098	1128	Chromosome condensation complex Condensin, subunit	88.9
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.63
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	88.33
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.04
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	87.82
KOG2229	616	consensus Protein required for actin cytoskeleton	87.24
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	87.17
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	87.03
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	86.96
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	86.37
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.29
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.26
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.23
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	86.06
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	86.05
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.6
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	85.39
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	85.03
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.01
KOG2005	878	consensus 26S proteasome regulatory complex, subun	84.86
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	84.85
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.11
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	83.91
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	83.79
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.74
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	83.67
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	83.49
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	83.35
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	83.34
KOG1988	970	consensus Uncharacterized conserved protein [Funct	83.3
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	83.12
KOG0413	1529	consensus Uncharacterized conserved protein relate	82.4
KOG2199	462	consensus Signal transducing adaptor protein STAM/	81.95
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	81.18
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	80.87
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	80.3
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	80.18

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-62  Score=455.13  Aligned_cols=447  Identities=68%  Similarity=1.076  Sum_probs=418.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.++..+.|+++..+..+...++++++.+.++.++.++..|++|.+++.|...+++.++..|+|+|.|+++++.+..
T Consensus        66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T  145 (514)
T KOG0166|consen   66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT  145 (514)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence            34778899999999999999999999999999888899999999999999999877669999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|.++.++.++.+++..+++.|.|+|+|++.+++.+|+.+++.|++.+|+.++..+....+.+++.|+|+|+|++
T Consensus       146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999996555568999999999999999


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      . |.........++|.|..++++.|+.+...++|++++++.+..+.++.+++.|+++.|+.+|.+.++.++..|+++++|
T Consensus       226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN  305 (514)
T KOG0166|consen  226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN  305 (514)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence            8 788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      ++.+++.+.+.+++.|+++.+..++...+...+|++|+|+++|++.++.++++.+++.|++|.|+++++..+.++|++|+
T Consensus       306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999998553778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      |+++|++..+++++..+|.+.|++++|+++|.-.|.++...++.++.++++.++.......    |++...+++.||+++
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~----n~~~~~IEe~ggldk  461 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT----NPLAIMIEEAGGLDK  461 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHccChhH
Confidence            9999999999999999999999999999999999999999999999999999887654311    779999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316          429 IENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFAGNGLPVPSGGFNF  487 (488)
Q Consensus       429 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (488)
                      ++.|++|.|.+++++|..++++||.+|+|++. .|...    +|+|.+++   |+|+|||
T Consensus       462 iE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~----~~~~~~~~---~~~~f~f  514 (514)
T KOG0166|consen  462 IENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQPTTS----QFTFQVQA---PDGGFNF  514 (514)
T ss_pred             HHHhhccccHHHHHHHHHHHHHhcCCCccccccccccc----ccccCCCC---CCCCCCC
Confidence            99999999999999999999999998755443 32222    89988884   9999998

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=5.5e-60  Score=406.81  Aligned_cols=441  Identities=57%  Similarity=0.908  Sum_probs=406.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      .-+|.+.+.|.|+|.+.++.|...++++++.+..++++.+++.|++|.+++++......-.+..|+|+|.|+++++....
T Consensus        71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            45799999999999999999999999999999999999999999999999999554436789999999999999988888


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-cHhHHHHHHHHHHHhhc
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~v~~~a~~~L~~l~~  188 (488)
                      ..+++.|.+|.++++|.+++.++++.+.|+|+|++.+++.+|+.+++.|++++++.++..+. +.++.+++.|+|+|+|+
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR  230 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR  230 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999999994332 45889999999999999


Q ss_pred             CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          189 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      +. |...-......+|.|.+++.+.|+++...|+|+++.++....+.++.+++.|+.+.|+++|.+++..++..|++.++
T Consensus       231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG  310 (526)
T COG5064         231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG  310 (526)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence            98 66677778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      |+..+++.+.+.+++.|+++.+..+|.++ ...+|++|||+++|+..++.++++.+++.+++|.|+.+|...+..++++|
T Consensus       311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA  389 (526)
T COG5064         311 NIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA  389 (526)
T ss_pred             CeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011316          348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  425 (488)
Q Consensus       348 ~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~  425 (488)
                      ||++.|.++++  .++..++|.++|++++|+++|.-.+.++.+.++.++.++++.++..+.. .....|.|....++.||
T Consensus       390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Agg  468 (526)
T COG5064         390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGG  468 (526)
T ss_pred             HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhccc
Confidence            99999999876  5789999999999999999999999999999999999999988766543 23445778888999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccC
Q 011316          426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFA  474 (488)
Q Consensus       426 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~  474 (488)
                      ++.+..++++.|.+++++|..++++||.+|+.=|| +|+-.  -.-|+|.
T Consensus       469 md~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~--g~tftfg  516 (526)
T COG5064         469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETA--GNTFTFG  516 (526)
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCcccc--CCeeecC
Confidence            99999999999999999999999999999887777 44333  2356663

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-43  Score=328.61  Aligned_cols=378  Identities=27%  Similarity=0.429  Sum_probs=338.3

Q ss_pred             CCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011316           16 KPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA   94 (488)
Q Consensus        16 ~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a   94 (488)
                      .|++..+..     |.+|.++++|. ..++.++..|+|+|.+++++. .+..+.+++.|.+|.|++++.+++ .+++++|
T Consensus       100 ppi~~vi~~-----G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQa  172 (514)
T KOG0166|consen  100 PPIDEVIQS-----GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQA  172 (514)
T ss_pred             CCHHHHHHc-----CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHH
Confidence            455556666     99999999997 466999999999999999987 788899999999999999999999 9999999


Q ss_pred             HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH
Q 011316           95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  173 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~  173 (488)
                      +|+|+|++.+++.+|+.+++.|+++.|+.++...+. .+.+++.|+|+|+|++.......-.-..+++.|..++ .+.|+
T Consensus       173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~  251 (514)
T KOG0166|consen  173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDE  251 (514)
T ss_pred             HHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCH
Confidence            999999999999999999999999999999988665 7889999999999987632222222335788888998 89999


Q ss_pred             hHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316          174 SMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  252 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  252 (488)
                      .+...|+|++++|+.+. +........|+++.|+++|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..++.
T Consensus       252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~  331 (514)
T KOG0166|consen  252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS  331 (514)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc
Confidence            99999999999999887 55566677899999999999999999999999999999999999999999999999999998


Q ss_pred             -CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChH
Q 011316          253 -HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIG  330 (488)
Q Consensus       253 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~  330 (488)
                       ++...++..|+|+++|++.++.++++.+++.|+++.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++
T Consensus       332 ~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~  410 (514)
T KOG0166|consen  332 SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIK  410 (514)
T ss_pred             cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCch
Confidence             56667999999999999999999999999999999999999999 89999999999999998 6899999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          331 PLVNLLLNAEFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      .++.+|.-.|.++...++.+|.++...+.       ......+-+.|+++.+..+-.+.+.++...|...+.+.+..++
T Consensus       411 plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~  489 (514)
T KOG0166|consen  411 PLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED  489 (514)
T ss_pred             hhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence            99999988899999999999999986441       3345566788999999999999999999999999988876553

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.5e-43  Score=303.11  Aligned_cols=376  Identities=25%  Similarity=0.353  Sum_probs=333.7

Q ss_pred             hcCCCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHH
Q 011316           13 SLLKPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ   91 (488)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~   91 (488)
                      ....|++.++..     |.+|++++.|. .+..-.+..|+|+|.+++++. ..+.+.+++.|.+|.++++|.+++ .+++
T Consensus       102 E~~PPIq~VIda-----GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~  174 (526)
T COG5064         102 ETSPPIQPVIDA-----GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVR  174 (526)
T ss_pred             ccCCCchhHHhc-----cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHH
Confidence            346788999999     99999999994 577788999999999999987 677788889999999999999999 8999


Q ss_pred             HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHh
Q 011316           92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus        92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l  167 (488)
                      ++++|+|+|++.+++.+|+.+.+.|++++++.++.+.  +..+.+++.|+|+|+|++..  .....+.  ..++.|.+++
T Consensus       175 eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLi  252 (526)
T COG5064         175 EQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLI  252 (526)
T ss_pred             HHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHH
Confidence            9999999999999999999999999999999998874  45889999999999997642  2222222  3678888888


Q ss_pred             cccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011316          168 NEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  246 (488)
Q Consensus       168 ~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~  246 (488)
                       .+.|+++...|+|++++++.+. +........|..+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.
T Consensus       253 -ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a  331 (526)
T COG5064         253 -YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA  331 (526)
T ss_pred             -hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence             8889999999999999999987 45555667899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC---CHHHHHHH
Q 011316          247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAI  323 (488)
Q Consensus       247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l  323 (488)
                      +..+|.++...+|..|||+++|++.++.++.+.+++.+++|.|+++|.+. +..+|++|||+++|..++   .++.++.+
T Consensus       332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryL  410 (526)
T COG5064         332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYL  410 (526)
T ss_pred             HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999 999999999999999983   57889999


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC---------H-HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 011316          324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS---------N-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG  393 (488)
Q Consensus       324 ~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---------~-~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~  393 (488)
                      ++.|++..|+.+|.-.+..+.+.++.++.|+...+.         . ....++-+.|+++.+..+-++.+..+...|..+
T Consensus       411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsI  490 (526)
T COG5064         411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSI  490 (526)
T ss_pred             HHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHH
Confidence            999999999999999888888888999999986552         2 233444458999999999999999999999888


Q ss_pred             HHHHHH
Q 011316          394 LENILK  399 (488)
Q Consensus       394 L~~l~~  399 (488)
                      +..++.
T Consensus       491 Ie~fFg  496 (526)
T COG5064         491 IEKFFG  496 (526)
T ss_pred             HHHHcc
Confidence            887763

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.3e-37  Score=329.61  Aligned_cols=407  Identities=21%  Similarity=0.237  Sum_probs=341.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      |++|.+++.|+++++..+..|+++|.+++... .+....+++.|++|.|+++|.+++++.+|+.|+|+|.+++.++++.+
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r  267 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK  267 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999998887764 46788899999999999999876547999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHhhCCCC---------HHHHHHHHHHHhhhhCCCch-----------hHH---HHHhcCChHHHHHH
Q 011316          110 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRD---LVLSNGALMPLLAQ  166 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~---~~~~~~~i~~l~~~  166 (488)
                      ..+++.|+++.|++++.+++         ..++++|+|+|+|+|.+.+.           .+.   .....|++.+++..
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l  347 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV  347 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence            99999999999999998644         45699999999999987433           111   11334667777766


Q ss_pred             hcccccHhHH----HHHHHHHHHhhcCC-CCCCh-------------------hhhhchHHHHHHhhccCChhHHHHHHH
Q 011316          167 FNEHAKLSML----RNATWTLSNFCRGK-PQPLF-------------------EQTRPALPALERLIHSNDDEVLTDACW  222 (488)
Q Consensus       167 l~~~~~~~v~----~~a~~~L~~l~~~~-~~~~~-------------------~~~~~~~~~L~~ll~~~~~~v~~~al~  222 (488)
                      + +.++...+    ..++|+|.+++++. +....                   ....++++.|+.++...+.+++..+++
T Consensus       348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~  426 (2102)
T PLN03200        348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR  426 (2102)
T ss_pred             c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence            6 33333333    25678888888876 22211                   122466788899999999999999999


Q ss_pred             HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHH
Q 011316          223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  302 (488)
Q Consensus       223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~  302 (488)
                      +|.+++.++.+..+.+.+.|+++.|+++|.++++.++..+++++++++.+++..+..+.+.|+++.|+++|.++ +..++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq  505 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK  505 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence            99999999888889999999999999999999999999999999999998888888999999999999999999 99999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316          303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~  382 (488)
                      ++|+|+|+|++.++++.+..+.+.|+++.|+++|.++++++++.|+++|.+++..++.+.         ++.++.++.++
T Consensus       506 eeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLlsd  576 (2102)
T PLN03200        506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLGD  576 (2102)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcCC
Confidence            999999999998755544445578999999999999999999999999999998776553         36677889999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316          383 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       383 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ++.++..++.++.+++........         ........|+++.|.+++.++++++++.|.+++.+|+....+
T Consensus       577 d~~~~~~aL~vLgnIlsl~~~~d~---------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        577 LPESKVHVLDVLGHVLSVASLEDL---------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             ChhHHHHHHHHHHHHHhhcchhHH---------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            999999999999999876554321         122234579999999999999999999999999999986544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=324.13  Aligned_cols=416  Identities=19%  Similarity=0.197  Sum_probs=367.9

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+.++.|+.+|.+.+.++|..++++|..++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|++++++++.++++.
T Consensus       403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nden  480 (2102)
T PLN03200        403 AEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDES  480 (2102)
T ss_pred             ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHH
Confidence            477889999999999999999999999987665 788999999999999999999998 899999999999999988899


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+++.|++|.|+++|++++..+++.|+|+|+|++.+++..+..+.+.|++++|+++| ++.+...+..++|+|.+++.
T Consensus       481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~  559 (2102)
T PLN03200        481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVR  559 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998877777787889999999999 67788999999999999964


Q ss_pred             CCCCCC--------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316          189 GKPQPL--------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       189 ~~~~~~--------------------------------------~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      ......                                      .....++++.|++++++++..+++.|+++|.+++..
T Consensus       560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~  639 (2102)
T PLN03200        560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS  639 (2102)
T ss_pred             ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            331110                                      001247899999999999999999999999999999


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      ..+..+.++..|+++.++.+|.+.+.+++..++++|++++.+... ++..+++.|+++.|+++|++. +.+++..|+.+|
T Consensus       640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~AL  718 (2102)
T PLN03200        640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCAL  718 (2102)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHH
Confidence            888888899999999999999999999999999999999975443 445668999999999999998 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHHhhcCCCCHHHH
Q 011316          310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLNCPDPRIV  387 (488)
Q Consensus       310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~v~  387 (488)
                      .|++.. ++....+.+.|+++.|++++++++++.|++|+++|.+++...+.+.  ..++...|.+..|+++|+..|.+..
T Consensus       719 anLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~  797 (2102)
T PLN03200        719 ANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS  797 (2102)
T ss_pred             HHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence            999987 4566777888999999999999999999999999999998876544  3666788999999999999888776


Q ss_pred             HH--HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          388 TV--CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       388 ~~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ..  ++++|..+.+.......     ..++|...++..++++.|...+.+.+|.++++|..+|+++..+
T Consensus       798 ~~~~al~~l~~l~~~~~~~~~-----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~  861 (2102)
T PLN03200        798 ATSEALEALALLARTKGGANF-----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD  861 (2102)
T ss_pred             hHHHHHHHHHHHHhhcccCCC-----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence            65  99999999886554432     3467899999999999998888999999999999999999875

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.6e-30  Score=225.60  Aligned_cols=364  Identities=21%  Similarity=0.277  Sum_probs=318.3

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316           27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      .++.++..|+..+.++.-++|..+..++.+++..  .+....+...|++..+.++-++.+ ..+|..+..+|.++.. ..
T Consensus       123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~  198 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR  198 (550)
T ss_pred             EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence            3468899999999999999999999999998876  366777889999999999878888 8999999999999998 88


Q ss_pred             hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhcccccHhHHHHHHHHHH
Q 011316          107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~v~~~a~~~L~  184 (488)
                      ++|+.++..|++|.|+.++++.+.+++..|..++++++.+.. .|+.+.+.+  .++.|+.++ +++++.++..|..+|.
T Consensus       199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr  276 (550)
T KOG4224|consen  199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR  276 (550)
T ss_pred             hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987654 577788877  899999999 8889999999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC-cchHhHHH
Q 011316          185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPAL  263 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~  263 (488)
                      +++.+..........|.+|.++++++++..+.......|+.|++-+.-+. ..+++.|++..|+.+|...+ ++++..|.
T Consensus       277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAv  355 (550)
T KOG4224|consen  277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAV  355 (550)
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHH
Confidence            99998877777778999999999999998888889999999999776544 55888999999999998865 55999999


Q ss_pred             HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 011316          264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  343 (488)
Q Consensus       264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  343 (488)
                      .+|.+++..++..+..+++.|.++.+..++.+. .-.++.+...++..++.. +..+..+.+.|++|.|+.++.+.+.++
T Consensus       356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev  433 (550)
T KOG4224|consen  356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV  433 (550)
T ss_pred             HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence            999999998888889999999999999999998 888999999999999875 455678899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHH------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVS------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~------~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +.+|+.+|.|+++.-  +....+++      .|.-..|.+.+.+.+..++..+.|.+..++...
T Consensus       434 ~gNaAaAL~Nlss~v--~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  434 RGNAAAALINLSSDV--EHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             cccHHHHHHhhhhhh--HHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            999999999998743  55555554      355667777788777777777888777776543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.3e-30  Score=227.42  Aligned_cols=365  Identities=23%  Similarity=0.255  Sum_probs=319.9

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316           27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      .+.+.+.++...+++.++.++..+..++.+++-+.  +..-.+++.+++..|+.-+.++. .++|..+..|+.+++. ..
T Consensus        82 Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~--enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d  157 (550)
T KOG4224|consen   82 VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNM--ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FD  157 (550)
T ss_pred             hhhhhhhHHHHHHhCcchhhhhhhhhhhccceecc--CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cc
Confidence            34467888999999999999999999999987653  44555667788888887777777 6999999999999999 58


Q ss_pred             hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      +++..+...|++.++.++-++.+..++.++..+|.|+.. +.+.|+.++..|+++.|+.++ +.+|.+++..++.+++++
T Consensus       158 ~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnI  235 (550)
T KOG4224|consen  158 SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNI  235 (550)
T ss_pred             cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhh
Confidence            889999999999999998888999999999999999974 455788999999999999999 899999999999999999


Q ss_pred             hcCCCCCChhhhh--chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011316          187 CRGKPQPLFEQTR--PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  264 (488)
Q Consensus       187 ~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  264 (488)
                      +-...........  .++|.|+.++++++++++-.|..+|++++.....+ ..+.+.|.+|.++++++++.-........
T Consensus       236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVa  314 (550)
T KOG4224|consen  236 AVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVA  314 (550)
T ss_pred             hhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence            9877444554444  49999999999999999999999999999876544 56899999999999999988777888899


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      |+.|++-+.- ..-.+.+.|++.+|+.+|+..++++++-.|..+|.|++..+......+.+.|.+|.+..++.++...++
T Consensus       315 CIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq  393 (550)
T KOG4224|consen  315 CIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ  393 (550)
T ss_pred             HHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence            9999987533 334566889999999999998778899999999999999878889999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      .+...++..++.+.  ..+..+.+.|.++.|+.+..+.+.+++..+..+|.|+...-
T Consensus       394 seisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  394 SEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            99999999998765  55788999999999999999999999999999999997643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=3.7e-25  Score=218.90  Aligned_cols=379  Identities=19%  Similarity=0.191  Sum_probs=314.7

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      ..+...+...|.+++..  ......+.+.|+++.|+++|++++ .++...++.+|.+++- ..+++..+.+.|+++.|.+
T Consensus       263 eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k  338 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK  338 (708)
T ss_pred             HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence            34444677889997764  467788889999999999999998 8999999999999999 7889999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011316          124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  203 (488)
Q Consensus       124 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  203 (488)
                      ++.+++.+++..++++|.|++.+.. .|..+++.|.++.++.++.   ++..+..++.+|.+++............+++|
T Consensus       339 Ll~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp  414 (708)
T PF05804_consen  339 LLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIP  414 (708)
T ss_pred             HhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence            9999999999999999999997765 6999999999999999993   34566779999999999886666666778999


Q ss_pred             HHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh
Q 011316          204 ALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  282 (488)
Q Consensus       204 ~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  282 (488)
                      .+++++.+ ++..+...++..+.|++.+... .+.+.+.++++.|+....+...   ...+..+.|++.+.+.....+. 
T Consensus       415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~-  489 (708)
T PF05804_consen  415 QLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV-  489 (708)
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH-
Confidence            99997654 5777778888999999987754 4778888889999888654332   2345789999998754443332 


Q ss_pred             CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH
Q 011316          283 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       283 ~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~  360 (488)
                       +.+..++.++..+.+++...+++++|+|+...+.+..+.+.+.+++|.|.+.|..+  ++++..+++..++.++.  ++
T Consensus       490 -~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~  566 (708)
T PF05804_consen  490 -DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP  566 (708)
T ss_pred             -HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH
Confidence             47777888888776889999999999999986555555555789999999999876  56799999999999986  56


Q ss_pred             HHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011316          361 EQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  438 (488)
Q Consensus       361 ~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~  438 (488)
                      +....+.++|+++.|+++++.  .|.+++.+.+.++.+++...+.            ...++.+.+....+.+++++.|+
T Consensus       567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t------------r~~ll~~~~~~~ylidL~~d~N~  634 (708)
T PF05804_consen  567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET------------REVLLKETEIPAYLIDLMHDKNA  634 (708)
T ss_pred             HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH------------HHHHHhccchHHHHHHHhcCCCH
Confidence            888999999999999999984  5689999999999999988663            24556778999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011316          439 EIYEKAVKILET  450 (488)
Q Consensus       439 ~v~~~a~~~l~~  450 (488)
                      +|++.+..++.-
T Consensus       635 ~ir~~~d~~Ldi  646 (708)
T PF05804_consen  635 EIRKVCDNALDI  646 (708)
T ss_pred             HHHHHHHHHHHH
Confidence            999888877653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.93  E-value=4.7e-23  Score=204.08  Aligned_cols=364  Identities=18%  Similarity=0.206  Sum_probs=304.0

Q ss_pred             HhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316           26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  105 (488)
Q Consensus        26 ~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~  105 (488)
                      -...+.++.|++.|.+++.++...++..|.++.-.  .++...+.+.|+++.|.+++.+++ .+++..++++|.|++. +
T Consensus       286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d  361 (708)
T PF05804_consen  286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-D  361 (708)
T ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-C
Confidence            34458999999999999999999999999996543  577899999999999999999998 8999999999999999 8


Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                      ++.|..+++.|++|.|+.+|.+  +..+..++.+|++++.+.. .+..+...++++.+++++..++++.+...+++.+.|
T Consensus       362 ~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN  438 (708)
T PF05804_consen  362 PELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN  438 (708)
T ss_pred             HHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence            9999999999999999999976  4566789999999998654 688888889999999998677777888888999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHH
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~  264 (488)
                      ++.+..+...+...++++.|++..-+....   -.+..++|++.+++.....+.  +.+..|+.++.. ++++....+++
T Consensus       439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LG  513 (708)
T PF05804_consen  439 LALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLG  513 (708)
T ss_pred             HhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHH
Confidence            999986666667678888888775443322   245689999988754433333  567777777766 46789999999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Ch
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EF  341 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~  341 (488)
                      +|+|+...+......+.+.++++.+.+.|..+. .+++..+++..++.++.. +.....+.+.|+++.|+.++...  |.
T Consensus       514 iLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDd  592 (708)
T PF05804_consen  514 ILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDD  592 (708)
T ss_pred             HHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchH
Confidence            999999866666666667899999999996552 457889999999988865 77778888999999999999876  78


Q ss_pred             hHHHHHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011316          342 EIKKEAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      ++..+.++++..+..+.  +.+..+ .+.+++..|++++++.+++++..|-.+|.-+...++..
T Consensus       593 E~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w  654 (708)
T PF05804_consen  593 EIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW  654 (708)
T ss_pred             HHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence            89999999999999875  445555 45799999999999999999999999999888887654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5.2e-19  Score=170.59  Aligned_cols=389  Identities=19%  Similarity=0.277  Sum_probs=313.6

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+..|+..|+.+ |+..|++|+.-|+++++-.+.+...-+.-..++|.|+.+|++..+.++...|+++|.+++.-.|..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            4678899999875 999999999999999988767777766667799999999999988999999999999999988999


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ...+++.+.||.|+.-|.. ...++.++++.+|-.|++..+.   .+++.|++...+..+ +--+..+++.|+.+..|+|
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC  322 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986655 8899999999999999988764   788999999999999 6678899999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCCC----cchHh
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPS----PSVLI  260 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~  260 (488)
                      ..-.....-.....+|.|..+|...|.+..+.++-++..++.   ..++..+.+...+++....+++.-..    ..+..
T Consensus       323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            998888888889999999999999999999999999999884   45567777888899999999886532    34555


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-------------hhhHHHHHH---------------------
Q 011316          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------KKSIKKEAC---------------------  306 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-------------~~~v~~~a~---------------------  306 (488)
                      ..+..+..++.+.+.....+.+.++...+..+|....             .+.-..+..                     
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~  482 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS  482 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence            6777888888887877777777788777777774321             000000000                     


Q ss_pred             -------------------------------HHHHH----------------------HhcCCHHHHHHHHHcCChHHHH
Q 011316          307 -------------------------------WTISN----------------------ITAGNVNQIQAIIEAGIIGPLV  333 (488)
Q Consensus       307 -------------------------------~~L~n----------------------l~~~~~~~~~~l~~~~~l~~L~  333 (488)
                                                     +.+..                      +....++..+.+.. .++|.|+
T Consensus       483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv  561 (1051)
T KOG0168|consen  483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV  561 (1051)
T ss_pred             hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence                                           11110                      00011233333333 4799999


Q ss_pred             HHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011316          334 NLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG  411 (488)
Q Consensus       334 ~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  411 (488)
                      +++.+. ++.||..++.||..+....+.+.+..++.. ..-..+-.++.+.|..+..-|+....-+++.-+..       
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~-------  634 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT-------  634 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH-------
Confidence            999887 999999999999999998888887777654 55566777999999999999999998888765543       


Q ss_pred             ccchHHHHHHhhccHHHHHHhhc
Q 011316          412 GVNLFAQAIDDAEGLEKIENLQS  434 (488)
Q Consensus       412 ~~~~~~~~l~~~g~~~~l~~l~~  434 (488)
                          |...|.+.|.+..+.+|..
T Consensus       635 ----F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  635 ----FSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             ----hhhhHhhhhHHHHHHHHhc
Confidence                7888999999999999976

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=2.3e-18  Score=166.90  Aligned_cols=365  Identities=20%  Similarity=0.226  Sum_probs=285.4

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch--hH
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~  151 (488)
                      -+|..+.+|.+.+ +.++..|+.-+..+|.++.+.+..+.+.|+|+.|+.++.+.+.+++.+|+++|.||......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4778889999988 89999999999999999999999999999999999999999999999999999999976654  67


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--------------ChhHH
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--------------DDEVL  217 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--------------~~~v~  217 (488)
                      -.+.+.+.++.+++++.+..|.++++.+..+|+||+..+ ..........+..|..-+-.+              +..+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788999999999999977789999999999999999984 334444456666665544311              25678


Q ss_pred             HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCch---------------
Q 011316          218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM---------------  275 (488)
Q Consensus       218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~---------------  275 (488)
                      ..+..+|+|++....+..+.+.+. |+++.|+..+++      .+....+.++.++.|+.+.-..               
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999998776666666665 888998888753      4556677888888888753220               


Q ss_pred             ----------------hhHH----------------------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-
Q 011316          276 ----------------QTQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-  316 (488)
Q Consensus       276 ----------------~~~~----------------------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-  316 (488)
                                      ..+.                      +....++...+.+|....+..+.+.++.+|-|++.+. 
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                            0000                      1122234454555554447788999999999999842 


Q ss_pred             ---HHHHHHH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC------CHHH
Q 011316          317 ---VNQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP------DPRI  386 (488)
Q Consensus       317 ---~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~v  386 (488)
                         ...+..+ .+..+++.|++++..+++.|...++.+|.|++.+.  .. +.++..++++.|++.|...      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               2233334 56789999999999999999999999999999864  33 4455589999999999853      3588


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCC
Q 011316          387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~  455 (488)
                      +..++..|.+++......            ...+-+.+++++|..+..+ .++++.+.|..++..+|.-.
T Consensus       629 v~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            889999999998665543            4446668889999998644 57899999999999998853

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.81  E-value=1e-17  Score=162.36  Aligned_cols=365  Identities=21%  Similarity=0.258  Sum_probs=282.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--  107 (488)
                      -.+|..+..|.+.++.+|..|+..+..+.-++ ++....+.+.|+|+.|+.+|.+.. .+++.+|+++|.|+..++..  
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence            45788999999999999999999998865554 666677778999999999999999 99999999999999986655  


Q ss_pred             hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-cc------------ccH
Q 011316          108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH------------AKL  173 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~------------~~~  173 (488)
                      ++-.+.+.++++.++++|+. .|.++++.+..+|+||++.+ .++..++. ..+..|...+. ..            .+.
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence            88889999999999999997 89999999999999999873 34444443 45666665542 11            146


Q ss_pred             hHHHHHHHHHHHhhcCC-C-CCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCch------------
Q 011316          174 SMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTND------------  233 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~-~-~~~~~~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~------------  233 (488)
                      ++..++..+|.|++... + ........|.+..|+..++      ..|.+..+.++.++.|++..-..            
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            78899999999999855 2 3333455788999988876      34778889999999999843210            


Q ss_pred             -------------------hHHH----------------------HHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhc
Q 011316          234 -------------------KIQA----------------------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       234 -------------------~~~~----------------------~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~  271 (488)
                                         ..+.                      +....++..-..++ .+.++.+.+.+..+|-|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                               0000                      11111333322233 33566788999999999998


Q ss_pred             CCchh----hHHH-hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------C
Q 011316          272 GDDMQ----TQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------E  340 (488)
Q Consensus       272 ~~~~~----~~~~-~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~------~  340 (488)
                      +....    +..+ .+..+++.++++|+.+ +..+...++.+|.|++.+ .. .+.++..++++.|++.|...      +
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~s  625 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLS  625 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCch
Confidence            76532    3333 4778999999999999 999999999999999986 33 34455678999999999875      3


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011316          341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~  402 (488)
                      +++...++.+|.++... +....+.+.+.+.++.|+.+.++. +++..+.+...|..|..+.+
T Consensus       626 edtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  626 EDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999864 568889999999999999988864 45888888888888887766

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.80  E-value=5.2e-16  Score=152.83  Aligned_cols=399  Identities=16%  Similarity=0.167  Sum_probs=300.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+..+|.+.+.+....++.+|..++....   ...+ ..+..+.|...|.+++ +.+|..+++.+.+++..+......+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            47778888888777888899999887542   2222 4578899999999999 99999999999999987777777788


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CC
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQ  192 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~  192 (488)
                      +.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..+|..+..++.+++... ..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999877654 4566777788888888 5557788899999999998876 33


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcch-----H-hHHHHHH
Q 011316          193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV-----L-IPALRTV  266 (488)
Q Consensus       193 ~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-----~-~~a~~~L  266 (488)
                      .......|+++.++..++++|.-++..++.++..++..+ ...+.+.+.|+++.|..++.+...+-     . -..+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            344455789999999999999999999999999999944 45688889999999999997643222     2 2234667


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHc-C----ChHHHHHHHhcCC
Q 011316          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEA-G----IIGPLVNLLLNAE  340 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~l~~L~~ll~~~~  340 (488)
                      ++++...+....... ..++..+..++.+. +...+..|..+++.++.. .+....+ ... +    ++........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            777775443332222 24566677777788 899999999999999865 5555555 332 2    3445555555667


Q ss_pred             hhHHHHHHHHHHHhccCCCH---HH----HHH---HHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011316          341 FEIKKEAAWAISNATSGGSN---EQ----IKF---LVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  409 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~---~~----~~~---l~~~~~~~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  409 (488)
                      .++|..++.++.++......   +.    ...   ....+... .++.+++.+=++++..++..|..++...- .     
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W-g-----  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW-G-----  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH-H-----
Confidence            78999999999999654432   11    111   12234455 88888888879999999999999987643 2     


Q ss_pred             CCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316          410 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       410 ~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                            .+.+....|.++.+.+=....+++.++.-..++..+...-
T Consensus       425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~  464 (503)
T PF10508_consen  425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS  464 (503)
T ss_pred             ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence                  2555666676777766556667888888888888877543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.80  E-value=4.5e-16  Score=153.29  Aligned_cols=366  Identities=17%  Similarity=0.185  Sum_probs=279.4

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011316           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  155 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  155 (488)
                      +.++..|++.+ .+....++.+|..+.. .......  ..+..+.|...|.++++.+|..+++.+++++.++......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34888888887 6777888889998887 3222222  346689999999999999999999999999988887777888


Q ss_pred             hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316          156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       156 ~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      +.+.++.++..+ .+++..+...|+.+|..++...+........+.+..|..++.+.+..++..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            889999999999 8899999999999999999877544445556678889999988888999999999999999999888


Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh-----HHHHHHHHHH
Q 011316          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEACWTIS  310 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~-----v~~~a~~~L~  310 (488)
                      ..+.+.|+++.++..++++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.....     .-...+...+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            989999999999999999888899999999999999 6777888899999999999997652222     1223345666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH-HHC-C----ChHHHHhhcCCCCH
Q 011316          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-G----CIKPLCDLLNCPDP  384 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-~----~~~~L~~ll~~~~~  384 (488)
                      +++...+....... ..++..+.+++.+.|+..+..|..+++.+++  +.+....+ ... +    ++..+.....+...
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            77764343332222 2366777788888899999999999999986  44666666 322 2    35555555667778


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc--cHH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE--GLE-KIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +++..++.++.+++......... +  -.+.....+...+  ... .+..+.+.|=++++..+..++..+..
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~-~--i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN-D--ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH-H--HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            99999999999998665431100 0  0011122222222  233 77888899999999999999887553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.78  E-value=4.8e-17  Score=146.11  Aligned_cols=381  Identities=16%  Similarity=0.137  Sum_probs=276.8

Q ss_pred             CCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316           41 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      ..+..++..+..++......+  ++...+.-+..++++.|.+...+++ .++.+++.++|+|+|.++.++|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            455666777777777765332  1112333355678888889888887 7999999999999999999999999999998


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCC
Q 011316          119 PIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       119 ~~L~~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ..+++.|+.       .+.+....+...|.|..-++.+.+..+++.|+++.+...+. ...+....+.......++.+-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888887765       23577888899999999999999999999999998888774 3344444444444444433221


Q ss_pred             C--CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcc-------hH
Q 011316          191 P--QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPS-------VL  259 (488)
Q Consensus       191 ~--~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~-------v~  259 (488)
                      .  .............+++++.+ .++++.+.++..+...+.++.-. -.+.+.|.+..++.+++. +...       ..
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            0  12223334566667777764 46788888889999888876544 336777899998888866 2211       22


Q ss_pred             hHHHHHHhHhhcCCchhhHHHhhCC-ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316          260 IPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       260 ~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      ..++....-+..+. +..+.+...+ +++.+.+.+.+. +......+..+++|+++. +.....+++.+++..|++++..
T Consensus       291 k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence            23444444444433 3444555444 899999999999 889999999999999997 5566778889999999999976


Q ss_pred             -----CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCcc
Q 011316          339 -----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV  413 (488)
Q Consensus       339 -----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  413 (488)
                           ++.+++..++.||.|++...  ..+..+...|+.+.+...++...|.+....+..++-+...-+..         
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------  436 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------  436 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence                 26678899999999998754  44667788999999999999999999888888887766544422         


Q ss_pred             chHHHHHHhhccHHHHHHhhcCCCHH
Q 011316          414 NLFAQAIDDAEGLEKIENLQSHDNTE  439 (488)
Q Consensus       414 ~~~~~~l~~~g~~~~l~~l~~~~~~~  439 (488)
                        ..+....-..+++|.+...+++-.
T Consensus       437 --a~eL~kn~~l~ekLv~Wsks~D~a  460 (604)
T KOG4500|consen  437 --ACELAKNPELFEKLVDWSKSPDFA  460 (604)
T ss_pred             --HHHHhcCHHHHHHHHHhhhCCccc
Confidence              244444455577778777776543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.6e-15  Score=151.00  Aligned_cols=392  Identities=15%  Similarity=0.168  Sum_probs=277.6

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..-..++..+.+ ..+.+|..-+..+..+++..-.+     -..++++.|++..++++ +..|+.|+.+|..+...-...
T Consensus        79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~  152 (1075)
T KOG2171|consen   79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNT  152 (1075)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccc
Confidence            344456777765 56899999999999998876322     34567888899999999 899999999999998732222


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHH
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWT  182 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~  182 (488)
                      -.... ..+.+.+.+.+.+++..+|..++++++.++...+   ...+.+.  ..+|.++..+.   +..|.+....++.+
T Consensus       153 ~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~  229 (1075)
T KOG2171|consen  153 LQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEA  229 (1075)
T ss_pred             cchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence            11111 1234555566666666699999999999886543   2222222  24666666553   44566667788888


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHH-----------------------
Q 011316          183 LSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA-----------------------  237 (488)
Q Consensus       183 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~-----------------------  237 (488)
                      |..++...+.........++.....+..+.  +..+|..|+.+|..+++..+...+.                       
T Consensus       230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~  309 (1075)
T KOG2171|consen  230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD  309 (1075)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence            888888776666666677777777777764  6888999998888777642211110                       


Q ss_pred             ----------------------HHH-----h-------CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011316          238 ----------------------VIE-----A-------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  283 (488)
Q Consensus       238 ----------------------~~~-----~-------~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  283 (488)
                                            .++     .       -+++.+-.++.++++.-|.+++.+|+.++.+........++ 
T Consensus       310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-  388 (1075)
T KOG2171|consen  310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-  388 (1075)
T ss_pred             hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-
Confidence                                  000     0       13455556678888999999999999999988877666555 


Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHH
Q 011316          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQ  362 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~  362 (488)
                      .+++.++..|+++ ++.||..|+.+++.++..-...++......+.+.|+..+.+. ++.|+..|+.++.|++..+..+.
T Consensus       389 ~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~  467 (1075)
T KOG2171|consen  389 KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI  467 (1075)
T ss_pred             HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence            6889999999999 999999999999999997666666666667888999999887 77999999999999998887665


Q ss_pred             HHHHHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC-HHH
Q 011316          363 IKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEI  440 (488)
Q Consensus       363 ~~~l~~~~~~~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v  440 (488)
                      ...... ++++ .|..++.++.+.+++.++.+|..+.......           |...+.+.  +..|..++...+ ++.
T Consensus       468 l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-----------F~pY~d~~--Mp~L~~~L~n~~~~d~  533 (1075)
T KOG2171|consen  468 LEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-----------FIPYFDRL--MPLLKNFLQNADDKDL  533 (1075)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-----------hHhHHHHH--HHHHHHHHhCCCchhh
Confidence            544333 4666 4444666778899999999999998766543           34444333  566776654433 444


Q ss_pred             HHHHHH
Q 011316          441 YEKAVK  446 (488)
Q Consensus       441 ~~~a~~  446 (488)
                      +....+
T Consensus       534 r~Lrgk  539 (1075)
T KOG2171|consen  534 RELRGK  539 (1075)
T ss_pred             HHHHhh
Confidence            433333

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.5e-17  Score=153.52  Aligned_cols=413  Identities=17%  Similarity=0.192  Sum_probs=273.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      ..++.+...++.+|--.-..+..+++...-...     ..++|.|..+|.+++ ....+.|..+|..+++++.+.-+.=+
T Consensus        94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~  167 (885)
T KOG2023|consen   94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDV  167 (885)
T ss_pred             HHHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhc
Confidence            355666666666666666666666665432222     468999999999999 78999999999999997765544311


Q ss_pred             hC----CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          114 DH----GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       114 ~~----g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ..    -.+|.++++.+++++.+|..|+.++..+....+..  .... -..++.+..+- .+.++.||.+.|.++..|..
T Consensus       168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Lle  244 (885)
T KOG2023|consen  168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLE  244 (885)
T ss_pred             ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHH
Confidence            11    35789999999999999999999999887554321  1111 12455555555 88899999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-------------------------------
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-------------------------------  237 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-------------------------------  237 (488)
                      ..+.+......++++.++...++.|.+|...|+.....+++.+.. ...                               
T Consensus       245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee  323 (885)
T KOG2023|consen  245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE  323 (885)
T ss_pred             hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence            888888888899999999999999999998888888777753311 000                               


Q ss_pred             -------------------------------------------------------------HHHhCC----HHHHHHhcC
Q 011316          238 -------------------------------------------------------------VIEAGV----CPRLVELLR  252 (488)
Q Consensus       238 -------------------------------------------------------------~~~~~~----l~~L~~lL~  252 (488)
                                                                                   +....+    +|.|...|.
T Consensus       324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~  403 (885)
T KOG2023|consen  324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS  403 (885)
T ss_pred             cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence                                                                         111122    333344445


Q ss_pred             CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChH
Q 011316          253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIG  330 (488)
Q Consensus       253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~  330 (488)
                      ++++.+|++++-+++.++.+.-...-.-+ ..+++.++.+|.+. .+-||..+||+|+..+.-  ..+ .+..+. .++.
T Consensus       404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~  479 (885)
T KOG2023|consen  404 SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLE  479 (885)
T ss_pred             cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHH
Confidence            56677778888888877764322111111 13688899999999 999999999999998861  112 222222 2566


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316          331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      .|++.+-+++..|++.|+.+++.+-.....+...++-.  .+..|+..+.-   .+--+..   .|++.+..+-...-..
T Consensus       480 ~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg~~Ln~  554 (885)
T KOG2023|consen  480 GLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--ILDQLVFAFGKYQKKNLLILY---DAIGTLADSVGHALNK  554 (885)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHhhcceehHH---HHHHHHHHHHHHhcCc
Confidence            66677777889999999999999988777776665433  44455544442   3333333   3444444332111000


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhc------------------------CCCHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 011316          408 GNTGGVNLFAQAIDDAEGLEKIENLQS------------------------HDNTEIYEKAVKILETYWVEEDEDEPLPP  463 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~------------------------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  463 (488)
                            ..|.+.+. --.+++...+.+                        --.+.|++++..++++.....-..+.+|.
T Consensus       555 ------~~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~  627 (885)
T KOG2023|consen  555 ------PAYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPT  627 (885)
T ss_pred             ------HHHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence                  00112111 111222222211                        22478899999999988877888888999


Q ss_pred             CCCCCCccc
Q 011316          464 GDATQAGFG  472 (488)
Q Consensus       464 ~~~~~~~~~  472 (488)
                      +++|.|+|-
T Consensus       628 ~~~pdkdfi  636 (885)
T KOG2023|consen  628 VEAPDKDFI  636 (885)
T ss_pred             ccCCCcceE
Confidence            999999983

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=6.8e-15  Score=134.24  Aligned_cols=378  Identities=17%  Similarity=0.125  Sum_probs=284.8

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  121 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  121 (488)
                      ..+.+...|++.|.+++...  ..-..+.+.+++..|++.|..++ .++.......|..++- -.+++..+.+.|+++.|
T Consensus       275 KQeqLLrva~ylLlNlAed~--~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL  350 (791)
T KOG1222|consen  275 KQEQLLRVAVYLLLNLAEDI--SVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence            34455556788888877643  44566778899999999999988 6888888888888887 67889999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 011316          122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA  201 (488)
Q Consensus       122 ~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  201 (488)
                      ++++...+++++...+..+.|++.++. .+..++..|.+|.+..++..+...   ..|+..+..++.++..+........
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdc  426 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDC  426 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHH
Confidence            999999999999999999999998765 688889999999999999544433   3466677777777655555666788


Q ss_pred             HHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHH
Q 011316          202 LPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       202 ~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      ++.+++.+-+ .+.++-...+..-.|++.+.. ..+.+++..++..|+... +..++    .-...+.|++.+.......
T Consensus       427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~  501 (791)
T KOG1222|consen  427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNM  501 (791)
T ss_pred             HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHH
Confidence            8888877654 355555555555557775543 335566666777777654 33333    2356777888766544444


Q ss_pred             HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011316          280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  357 (488)
                      +++  .+.-+..+++...++..-.+++++++|+...+-+-.+.+-+.+.+|.+-..|+.+  ..+++.....+++.++..
T Consensus       502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d  579 (791)
T KOG1222|consen  502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD  579 (791)
T ss_pred             HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence            444  4566777776665777888999999999886566555566788999999999876  556888888888888864


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011316          358 GSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  435 (488)
Q Consensus       358 ~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~  435 (488)
                        ......+...++++.|+++|+.  .|.+++.+.+..+..++.....            ..-++.+...-..+.+++++
T Consensus       580 --~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHD  645 (791)
T KOG1222|consen  580 --LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHD  645 (791)
T ss_pred             --hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhc
Confidence              4677888888999999999984  5678888888888888776332            24556777778889999999


Q ss_pred             CCHHHHHHHHHHH
Q 011316          436 DNTEIYEKAVKIL  448 (488)
Q Consensus       436 ~~~~v~~~a~~~l  448 (488)
                      .|.++++.+...+
T Consensus       646 kN~eiRkVCDn~L  658 (791)
T KOG1222|consen  646 KNAEIRKVCDNAL  658 (791)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999987666554

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.73  E-value=5.9e-15  Score=132.83  Aligned_cols=404  Identities=13%  Similarity=0.072  Sum_probs=294.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC---C---ChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~---~---~~~v~~~a~~~L~~l~~  103 (488)
                      +.++.|.+...|++.++..+++++|.++...+ .+.+..+.+.|+-..+++.|+.-   +   +.+....+...|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            56777777888999999999999999987765 78899999999977777777532   1   23455566778999998


Q ss_pred             CCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316          104 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       104 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~  180 (488)
                      ++.+.+.++++.|+++.|...+.-  .+....+..+....|+.+-. +...+...+......+++++.....+++...+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            899999999999999999887653  56666666666666654321 112344555666778888886667888889999


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CCh-------hHHHHHHHHHHHhccCCchhHHHHHHhC-CHHHHHHhc
Q 011316          181 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDD-------EVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL  251 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~-------~v~~~al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL  251 (488)
                      ..+...+.++...-.....|.+..++.+++. ++.       .....++....-+..++ +.++.+...+ +++.+.+++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHh
Confidence            9999999988777777778889999998875 221       22233333333344444 3456566655 899999999


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316          252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .+.+......+.-+++|+++ ++....++++.+++..+++.+...    .+-+++..++.+|.|++.. ..+...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence            99999999999999999999 455667788889999999988441    1567888999999999885 34456788899


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHH-HCCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK  405 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~  405 (488)
                      +...++..++...|.+...-+..+.-+..... ...-.+. ....++.|++.-+++|.. +.-.....+.-+++......
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe-~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd  481 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQE-YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD  481 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhchH-HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence            99999999999999999988888887765432 1222332 335677777777777754 44445555555554432111


Q ss_pred             ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011316          406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  448 (488)
Q Consensus       406 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l  448 (488)
                                ....+.+.||++....+..+.+-..+..|...+
T Consensus       482 ----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal  514 (604)
T KOG4500|consen  482 ----------VILTVPKSGGIKEKVSMFTKNHINMQNEALVAL  514 (604)
T ss_pred             ----------hHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence                      344566788899988888777777776666554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.5e-14  Score=145.60  Aligned_cols=360  Identities=19%  Similarity=0.209  Sum_probs=250.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc---
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS---  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~---  106 (488)
                      +.++.|.++.+|+++..|..|+..|..+...-++.....+.  .+.+.+.+.+.+++.+ +|..|+++++.++...+   
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~  194 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK  194 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence            34555666667999999999999999987654333222222  3566777888888844 99999999999887443   


Q ss_pred             hhhHHHHhCCCHHHHHHhhC----CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHH
Q 011316          107 ENTRVVIDHGAVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATW  181 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~v~~~a~~  181 (488)
                      ..+..+.  ..+|.++..+.    .++.+....++.+|..++...|.+-...+. .++...+.... ++-+..+|..|+.
T Consensus       195 ~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe  271 (1075)
T KOG2171|consen  195 SEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALE  271 (1075)
T ss_pred             HHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHH
Confidence            2233332  35566665554    466776777888888887766554332221 12333333332 2235566666666


Q ss_pred             HHHHhhcCCCCC-------------------------------------C---------------------hhhhhchHH
Q 011316          182 TLSNFCRGKPQP-------------------------------------L---------------------FEQTRPALP  203 (488)
Q Consensus       182 ~L~~l~~~~~~~-------------------------------------~---------------------~~~~~~~~~  203 (488)
                      ++..+++..+..                                     .                     ......+++
T Consensus       272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~  351 (1075)
T KOG2171|consen  272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE  351 (1075)
T ss_pred             HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH
Confidence            666554331000                                     0                     011133455


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011316          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  283 (488)
Q Consensus       204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  283 (488)
                      .+-.++.++++.-|..++.+|+.++++..+.+...+. .+++.++..|.+++|.||..|+.+++.++..-....+.-...
T Consensus       352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e  430 (1075)
T KOG2171|consen  352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE  430 (1075)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence            5666778899999999999999999998877776554 788888999999999999999999999999877777766677


Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChH-HHHHHHhcCChhHHHHHHHHHHHhccCCCHH
Q 011316          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNE  361 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  361 (488)
                      .+++.|+..+.+..+++++..|+.++-|++... .+.+...+. +++. .+..+++++.+.+++.++.+|+..+......
T Consensus       431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~  509 (1075)
T KOG2171|consen  431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK  509 (1075)
T ss_pred             hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence            888899999999888999999999999999843 344444444 4666 5555666778999999999999999877666


Q ss_pred             HHHHHHHCCChHHHHhhcCCCC----HHHHHHHHHHHHHHHH
Q 011316          362 QIKFLVSQGCIKPLCDLLNCPD----PRIVTVCLEGLENILK  399 (488)
Q Consensus       362 ~~~~l~~~~~~~~L~~ll~~~~----~~v~~~al~~L~~l~~  399 (488)
                      ..++.-.  .++.|...|...+    ..++-.+++++.-+-.
T Consensus       510 F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~  549 (1075)
T KOG2171|consen  510 FIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIAR  549 (1075)
T ss_pred             hHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence            7777654  7888888877654    3466666666665543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=3.4e-14  Score=129.78  Aligned_cols=361  Identities=15%  Similarity=0.155  Sum_probs=280.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+..|++.|..++.++.......|.++.-.  .++...+.+.|.+..|++++...+ ++++...+..+.|++. +...|
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence            5678899999998998888888888885443  466788899999999999999999 9999999999999999 78899


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|.+|.+..++.++.  -...|+..++.++.++. .+..+.....++.+++.+..+.+..+-...+...-|+|.+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            99999999999999997743  33457788888887655 5777777788999988876777777777777777899988


Q ss_pred             CCCCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011316          190 KPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG  267 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~  267 (488)
                      ..+.+.+.....+..+++. ++..|.-    ....++|++++.......+++  .+..|...++. ++++....++++++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            8777777777777777754 4455543    345678888776655444553  45556666655 45667788999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIK  344 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~  344 (488)
                      ++....-...+.+.+.+.+|.+-..|+.+. ..++....+-+++.++.. ......+...++++.++++|+..  |.+..
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            998876677777778899999999887642 345666666777777664 44555566789999999999875  67777


Q ss_pred             HHHHHHHHHhccCCCHHHHHH-HHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 011316          345 KEAAWAISNATSGGSNEQIKF-LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN  406 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~-l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~  406 (488)
                      .+.+.++..+..+.  ..+.. +.+...-..|++++++.+.++|+.|-.+|-.+...+....+
T Consensus       610 ~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  610 VQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            88888888888753  23333 34567888999999999999999999999988877665543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=1.2e-14  Score=126.93  Aligned_cols=310  Identities=12%  Similarity=0.126  Sum_probs=253.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316           40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      .+++..+...++.+|..+..+. +    .+.+..+...++++|... ++.++-...+.++..-|..++.+|+.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q-p----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ-P----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC-c----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            3577788888888888866543 2    245567888889988654 236888888889999888889999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---------hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          119 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       119 ~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +.+...+.. +...+.+.+.|++..+..+++         +....+...|++..|++.+.-..++.+...++.+|..++-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999977765 445688889999999876543         2345677778888999999767789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccC-Ch---hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPA  262 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~-~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a  262 (488)
                      .++........|++..+++++.+. +.   .....++..|+.++.+++. ...+++.|+.+.++.++..  .+|.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv-Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV-KSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch-HHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            877777778899999999999873 33   3557788888888877654 4779999999999988743  678999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011316          263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  341 (488)
Q Consensus       263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  341 (488)
                      +.+++.++-..++....+++.|+-...++-|+ ++....+++.|||.+.|++..+.+++..++.. .++.|+..-...++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999999999999999999999999885 45567899999999999999878888777775 67888888888888


Q ss_pred             hHHHHHHHHHHHhcc
Q 011316          342 EIKKEAAWAISNATS  356 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~  356 (488)
                      .....|-.+|..+-.
T Consensus       430 tce~~akaALRDLGc  444 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHHhcCc
Confidence            888888889988865

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.71  E-value=6.5e-15  Score=149.50  Aligned_cols=362  Identities=19%  Similarity=0.204  Sum_probs=274.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhH
Q 011316           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ..++..+...|++   ..++.|..+.+.  .+....+...|.++.|+++|.-++  ..+.+..|-.+|.||....++...
T Consensus       200 ~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr  274 (2195)
T KOG2122|consen  200 NSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR  274 (2195)
T ss_pred             hHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence            3566666666654   335556664432  566788889999999999998654  257888899999999986665543


Q ss_pred             HHHhCCCHHHHH---H-------hhCC--------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc----
Q 011316          111 VVIDHGAVPIFV---R-------LLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----  168 (488)
Q Consensus       111 ~~~~~g~i~~L~---~-------lL~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----  168 (488)
                      .-.+.-++..|-   .       ++..        .+..-...|+.+|..++.+ ++.|..+-+.|+++.+-+++.    
T Consensus       275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~  353 (2195)
T KOG2122|consen  275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHE  353 (2195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333323333332   1       2222        1112223566677777655 557999999999999988773    


Q ss_pred             -------ccccHhHHHHHHHHHHHhhcCCCC-C-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011316          169 -------EHAKLSMLRNATWTLSNFCRGKPQ-P-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  239 (488)
Q Consensus       169 -------~~~~~~v~~~a~~~L~~l~~~~~~-~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  239 (488)
                             +.....+++++..+|.||+.++.. + ......|++..++..|.+...++......+|+||+...+..++.++
T Consensus       354 mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL  433 (2195)
T KOG2122|consen  354 MHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL  433 (2195)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH
Confidence                   122457899999999999998833 2 3334579999999999988889999999999999976655555544


Q ss_pred             -HhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHh
Q 011316          240 -EAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNIT  313 (488)
Q Consensus       240 -~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~  313 (488)
                       +.|-+..|..+ |....+......+.+|+||+.+..+....+- -.|.+..|+.+|....   ...+-..|..+|.|.+
T Consensus       434 rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVS  513 (2195)
T KOG2122|consen  434 RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVS  513 (2195)
T ss_pred             HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHH
Confidence             55888888776 4556667888999999999998777665554 4588999999996541   3456778888998887


Q ss_pred             c---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316          314 A---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       314 ~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  390 (488)
                      .   .+.++++.+.+++++..|++.|++.+..+..++|.+|.||.... ++.-++|++.|.+..|.+++++++..+..-+
T Consensus       514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS  592 (2195)
T KOG2122|consen  514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS  592 (2195)
T ss_pred             hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence            6   46788888999999999999999999999999999999998764 5667999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 011316          391 LEGLENILKAG  401 (488)
Q Consensus       391 l~~L~~l~~~~  401 (488)
                      ..+|.|++..-
T Consensus       593 aaALrNLln~R  603 (2195)
T KOG2122|consen  593 AAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHhcCC
Confidence            99999998754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.9e-13  Score=119.50  Aligned_cols=317  Identities=15%  Similarity=0.167  Sum_probs=247.3

Q ss_pred             cCCHHHHHHhh---cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCC
Q 011316           72 SGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus        72 ~~~i~~L~~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~  146 (488)
                      .|..+.++-++   .+++ ..+-..++.+|..+..+.|+.    .+..+...++.+|..  ++.++....+..+..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            45555544433   3445 677888899998888866654    456678889998864  6788888888888888888


Q ss_pred             CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC----------ChhhhhchHHHHHHhhccC-Chh
Q 011316          147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP----------LFEQTRPALPALERLIHSN-DDE  215 (488)
Q Consensus       147 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~~L~~ll~~~-~~~  215 (488)
                      ++..++.+++.++++.+..-+..+....+.+.++|+++.+...+...          ......+++..|++.+... ++.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            88899999999999988888866666688899999999998765221          1122245678888888754 789


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-Ccc---hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH
Q 011316          216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  291 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  291 (488)
                      +...++.+|..++-.++ ..+.+.+.|+++.++.++.+. +..   ....++..|..++. ++.....+++.|+.+.++.
T Consensus       258 ~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence            99999999999987664 557799999999999999874 333   34567888888876 6777888889999999988


Q ss_pred             Hh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316          292 LL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       292 lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++ ++..++.+..+++.+++-++...+++...+++.|+-...++.++..  ...++++|++.+.|++..+ .+++..++.
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~  414 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA  414 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence            66 4555889999999999999998899999999999999999988875  5579999999999999865 455566555


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316          369 QGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       369 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                       .+++.|+..-+..++.....+-.+|+.+
T Consensus       415 -~GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  415 -NGIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             -ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence             5677777777777777777777777655

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.68  E-value=3.6e-14  Score=134.62  Aligned_cols=364  Identities=16%  Similarity=0.113  Sum_probs=241.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      .++..+.+.+|+..+.|..-..+.+.+. ++.....++.|.++.+..+++..+ ..+.+...+.++.....+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            4566677888999999999999988776 455557899999999999987654 26677777778888888788888999


Q ss_pred             HhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHH--HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          113 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       113 ~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .+.+.++.|.+++.+.+ ..+++..++++.++.+.++..-..  ......+..+..++ ..+...+...-+....+++..
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence            99999999999999987 899999999999998765421111  11111122222222 111111111111222222221


Q ss_pred             CCCCChhhhh-------------------------------------------------chHH--HHHHhhccCChhHHH
Q 011316          190 KPQPLFEQTR-------------------------------------------------PALP--ALERLIHSNDDEVLT  218 (488)
Q Consensus       190 ~~~~~~~~~~-------------------------------------------------~~~~--~L~~ll~~~~~~v~~  218 (488)
                      ..........                                                 ++.+  .+.+++++++...+.
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l  250 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL  250 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence            1111111111                                                 2222  233344455555555


Q ss_pred             HHHHHHHHhccCCchhH-----------------HH----------------------------------HHHhCCHHHH
Q 011316          219 DACWALSYLSDGTNDKI-----------------QA----------------------------------VIEAGVCPRL  247 (488)
Q Consensus       219 ~al~~L~~l~~~~~~~~-----------------~~----------------------------------~~~~~~l~~L  247 (488)
                      .++.++.++...+.+.-                 +.                                  ..+....+.+
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            55555555543320000                 00                                  0000011111


Q ss_pred             HHhc----------------------------------------------------CCCCcchHhHHHHHHhHhhcCCch
Q 011316          248 VELL----------------------------------------------------RHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       248 ~~lL----------------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      .+++                                                    ...+...+.+|+-++-++++.-..
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            1110                                                    112334555566666666554333


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      .+..+-...+.+++++++..+ +..++..+.++++|++.........++..|+++.+.+++.+.++.++..+.|+|.++.
T Consensus       411 L~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  411 LRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM  489 (678)
T ss_pred             HHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            333344567899999999888 9999999999999999977778889999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      .+++......+...-....+..+.+++++.|+++++..++|+...
T Consensus       490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            998877777777767777888888999999999999999999765

>PRK09687 putative lyase; Provisional

Probab=99.67  E-value=1.4e-14  Score=130.96  Aligned_cols=256  Identities=15%  Similarity=0.134  Sum_probs=202.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      --++.|.++|.+++ ..+|..|++.|..+-.           ..+++.+..++.++++.+|..++++|+.+-.....   
T Consensus        23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            45788899999999 8999999999987764           24578888899999999999999999998542211   


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                         ....++.|..++.+++++.|+..++.+|++++......    ...++..+...+.++++.|+..++++|+.+..   
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence               11245667767558889999999999999987543211    23456667788888999999999999986632   


Q ss_pred             hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316          233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                              ...++.|+.+|.++++.+|..|+.+|+.+...++         .+.+.|+..+.+. ++.||..|+++|+.+
T Consensus       158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence                    1467899999999999999999999999944333         3567799999988 999999999999986


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHH
Q 011316          313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCL  391 (488)
Q Consensus       313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al  391 (488)
                      -.  +         .+++.|++.+++++  ++..++.+|+.+..   +         ..++.|.++++ ++|..++..+.
T Consensus       220 ~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence            32  3         37899999999865  67889999999864   2         25788888886 78999999998


Q ss_pred             HHHHH
Q 011316          392 EGLEN  396 (488)
Q Consensus       392 ~~L~~  396 (488)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88753

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=9.1e-15  Score=148.49  Aligned_cols=326  Identities=18%  Similarity=0.191  Sum_probs=248.0

Q ss_pred             ccHHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHH-------hhcCC------CChhHH
Q 011316           30 ESLPAMVAGVWS---DDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIE-------FLSRD------DFPQLQ   91 (488)
Q Consensus        30 ~~i~~l~~~L~s---~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~-------lL~~~------~~~~v~   91 (488)
                      |.+|.+++.|.-   ++.+.+..|-.+|.+++...+.+.  .+.+.--.+++.+..       .++..      ...+-+
T Consensus       235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~  314 (2195)
T KOG2122|consen  235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ  314 (2195)
T ss_pred             cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence            899999999973   457889999999999987653222  122111112222221       12211      113445


Q ss_pred             H-HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHhhhhCCCchhHHH-HHhc
Q 011316           92 F-EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------------PTDDVREQAVWALGNVAGDSPKCRDL-VLSN  157 (488)
Q Consensus        92 ~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~  157 (488)
                      . .|+..|..++. ++++|..+.+.|+++++-.++.-            ....+|+.+..+|.||..++...+.. +-..
T Consensus       315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r  393 (2195)
T KOG2122|consen  315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR  393 (2195)
T ss_pred             hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence            5 56666777777 89999999999999999887742            23578999999999999877655544 4556


Q ss_pred             CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCchh
Q 011316          158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDK  234 (488)
Q Consensus       158 ~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~l-l~~~~~~v~~~al~~L~~l~~~~~~~  234 (488)
                      |++..++..| .+...++......+|.||+....  .+......|-+..|+.. ++.........++.+|+||+.+..++
T Consensus       394 gfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN  472 (2195)
T KOG2122|consen  394 GFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN  472 (2195)
T ss_pred             hHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence            8899999999 66666788888899999987652  22333345656666654 55667788999999999999887766


Q ss_pred             HHHHHHh-CCHHHHHHhcCCCC----cchHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHH
Q 011316          235 IQAVIEA-GVCPRLVELLRHPS----PSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  306 (488)
Q Consensus       235 ~~~~~~~-~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~  306 (488)
                      ...++.. |.+..|+.+|....    -.+.+.+-.+|.|.+.   .++..++.+.+++++..|+..|++. +..+...+|
T Consensus       473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaC  551 (2195)
T KOG2122|consen  473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNAC  551 (2195)
T ss_pred             chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecch
Confidence            6666654 88999999997752    4577777777777654   4566778888999999999999999 899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316          307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      .+|+||+..+++..+.+++.|.++.|..++.+++..+..-++.+|.|+...-
T Consensus       552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999998999999999999999999999999999999999999998654

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=3.5e-14  Score=128.41  Aligned_cols=255  Identities=16%  Similarity=0.123  Sum_probs=200.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      -.++.|...|.+++..+|..+++.|..+-.            ..+++.+.+++++++ +.+|..|+++|+.+-... .. 
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~-   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC-   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-
Confidence            578889999999999999999999988532            136778888899998 999999999999987522 11 


Q ss_pred             HHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          110 RVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                          ....++.|..+ ++++++.+|..++.+|++++......     ...++..+...+ .+.+..|+..++++|..+..
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence                11346777776 67789999999999999996443211     011344455556 66789999999999976643


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                                ...++.|+.++.++++.|+..++.+|+.+....+         ..++.|+..|.+.++.||..|++.|+.
T Consensus       158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence                      3588999999999999999999999999843322         456778999999999999999999988


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEA  347 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a  347 (488)
                      +-.  +         .+++.|++.++++ +  ++..++.+|+++..  +.         .+|.|..++. .+|..++..|
T Consensus       219 ~~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a  273 (280)
T PRK09687        219 RKD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKA  273 (280)
T ss_pred             cCC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence            533  2         4688999999887 4  67889999998854  22         7899999997 6699999999


Q ss_pred             HHHHHH
Q 011316          348 AWAISN  353 (488)
Q Consensus       348 ~~aL~~  353 (488)
                      .++|..
T Consensus       274 ~~a~~~  279 (280)
T PRK09687        274 IDKLKR  279 (280)
T ss_pred             HHHHhc
Confidence            998853

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.64  E-value=2e-13  Score=144.30  Aligned_cols=276  Identities=16%  Similarity=0.193  Sum_probs=221.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.|+..|.++++.+|..|+..|..+..            ...++.|+.+|.+++ +.+|..|+..|..+....+   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence            567889999999999999999999998532            246889999999988 8999999999988854111   


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                             ..+.|...|.++++.+|..++.+|..+....            ...++..+ .+.++.++..|+.+|..+-. 
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                   2357778888999999999999999874221            23456677 88899999999999997521 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                                  .+.+..++.++++.|+..++.+|..+.....         ..++.|..++.++++.+|..|+..|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        2346788999999999999999998865432         2367788999999999999999999998


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011316          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~  349 (488)
                      ... +         .....+...|.++ ++.||..|+.+|+.+...           ..++.|..++.+++..||..|++
T Consensus       803 g~~-~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCP-P---------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCc-c---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence            542 1         1235688889888 899999999999987432           25688999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011316          350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  396 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  396 (488)
                      +|..+.  .++.         ..+.|...+++++..|+..+..+|..
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999972  2332         35667789999999999999988863

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.58  E-value=5.9e-13  Score=117.55  Aligned_cols=238  Identities=19%  Similarity=0.213  Sum_probs=182.6

Q ss_pred             hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316          197 QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      ...+-++.++.+|+. .|+.+++.++.++++.+..+. ....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            446778899999985 589999999999999876654 447788889999999999999999999999999999885443


Q ss_pred             hhHHHhhCCChHHHHHH-hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316          276 QTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      . .. ++. .++.+.+. ...+.+..++..++.+|.|++..+..  ..++. +.++.+++++..++..+|..++++|.|+
T Consensus        88 ~-~~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   88 Q-EQ-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             H-HH-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3 22 332 35555553 44444778999999999999875222  22332 3799999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh---hccCCCCccchHHHHHHhhc-cHHHH
Q 011316          355 TSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAE---KNMGNTGGVNLFAQAIDDAE-GLEKI  429 (488)
Q Consensus       355 ~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~g-~~~~l  429 (488)
                      +.  ++...+.++..+++..++.+++.+ +.++...++..+.|+-..-.+.   .....+ ..+.....|.+.+ .-++|
T Consensus       162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~-~~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDF-SEDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             cc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccC-CchhHHHHHccHHHHHHHH
Confidence            97  458889999999999999999975 5788888999998885433222   111111 1233446676666 68889


Q ss_pred             HHhhcCCCHHHHHHH
Q 011316          430 ENLQSHDNTEIYEKA  444 (488)
Q Consensus       430 ~~l~~~~~~~v~~~a  444 (488)
                      ..+..|++++|+++.
T Consensus       239 ~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  239 QALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHcCCCHHHhhhc
Confidence            999999999999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.58  E-value=1.5e-12  Score=137.79  Aligned_cols=277  Identities=16%  Similarity=0.188  Sum_probs=218.8

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (488)
                      ...++.|+..|++++ +.+|..|+..|+.+..           .+.++.|...|+++++.+|..|+.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            346789999999999 9999999999998753           2458999999999999999999999988853222   


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                             ..+.+...| ++.++.++..++.+|..+....           ...++..+.++++.++..++.+|..+..  
T Consensus       685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                   124566777 6789999999999998865321           2357788999999999999999997621  


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                                  .+.|...+.++++.+|..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|++
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence                        2346678899999999999999998865321         2367788999998 89999999999998


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011316          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al  391 (488)
                      +... +.         ..+.+...+.++++.||..|+.+|..+...            ..++.|..+|+++++.||..+.
T Consensus       802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~  859 (897)
T PRK13800        802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV  859 (897)
T ss_pred             cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence            8543 11         335678889999999999999999987431            2468889999999999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316          392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      .+|..+ ...+                     ...+.|...+++++.+|+..|...|+.
T Consensus       860 ~aL~~~-~~~~---------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        860 LALTRW-PGDP---------------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHhcc-CCCH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999885 1111                     114557788889999999999988763

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.55  E-value=4.8e-13  Score=135.27  Aligned_cols=361  Identities=17%  Similarity=0.218  Sum_probs=252.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+.+.|.++++.++-.|++++.++...   +..     ..+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~-----~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA-----EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH-----HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh-----hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            567788889999999999999999997632   222     236788899999999 99999999999999886655432


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhh
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~  187 (488)
                         .. .++.+.+++.+.++.++..|+.++..+ ..++....     ..++.++..+.   ...++-.+..++.++..++
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence               12 589999999889999999999999999 22222101     23444444432   5678888888888888777


Q ss_pred             cCCCCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316          188 RGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      ...+    ...  ..+++.+..++++.++.+...++.++..+.....      .-..+++.+..++.++++.++..++..
T Consensus       221 ~~~~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  221 PMEP----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             cCCh----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence            5531    222  5688888888988899999999999998876543      222677889999999899999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhH
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEI  343 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v  343 (488)
                      |..++...+..   + .  .....+..+. ++ +..+|..++.++..++.  +.+...     +++.|...+.+ ++.++
T Consensus       291 L~~l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~  356 (526)
T PF01602_consen  291 LSQLAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF  356 (526)
T ss_dssp             HHHHCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred             HHHhhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence            99999865222   2 1  2233344555 55 88999999999999975  333333     56778888844 47889


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      +..++.+++.++....+....      .++.+++++...+..+...+...+.+++...+..+           ...    
T Consensus       357 ~~~~i~~I~~la~~~~~~~~~------~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~----  415 (526)
T PF01602_consen  357 RRELIKAIGDLAEKFPPDAEW------YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI----  415 (526)
T ss_dssp             HHHHHHHHHHHHHHHGSSHHH------HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH----
T ss_pred             hhhHHHHHHHHHhccCchHHH------HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH----
Confidence            999999999988543211111      36777778877777777777777777775544321           111    


Q ss_pred             ccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316          424 EGLEKIENL-QSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       424 g~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                        ++.+.++ .+-.++++...+.|++.+|-+..++
T Consensus       416 --l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~  448 (526)
T PF01602_consen  416 --LKKLIELLEDISSPEALAAAIWILGEYGELIEN  448 (526)
T ss_dssp             --HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred             --HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence              2333333 3356777888888888887665433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=9.4e-13  Score=116.29  Aligned_cols=196  Identities=19%  Similarity=0.238  Sum_probs=162.6

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      .+.+-++.|+.+|+..++|.+++.++.++++.+. .+.+++.+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4556789999999977669999999999999887 889999999999999999999999999999999999999877654


Q ss_pred             hHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          150 CRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                       +..+..  .+..+++.... ..+..++..++.+|.+++.......  ...+.++.++.++.+++..++..++++|.|++
T Consensus        88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~--~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH--MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh--hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             444332  46666665433 3478899999999999987653322  23568999999999999999999999999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcC
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~  272 (488)
                      .+.. ..+.++..+++..++.++... ..++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            8875 446688889999999999875 577889999999999764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.50  E-value=6.9e-11  Score=119.60  Aligned_cols=358  Identities=18%  Similarity=0.211  Sum_probs=253.3

Q ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           34 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        34 ~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .+.+.+.+.  +...+..++..+..+.... .+.      .-+.+..++++.+++ ...+.-+-..+..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            455666655  7777887877777765543 221      257888899999877 899999888899998866663222


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                           +++.+.+-+.++++.++..|++++++++  .++..+.     .++.+.+++ .++++.||+.|+.++..+....+
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 3688888899999999999999999997  3333222     466777777 78899999999999999988753


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ..  .... +++.+..++.++++.++..|+.++..+ ..++.....+. ...+..+.+++...+|..+..+++++..++.
T Consensus       147 ~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            32  1112 689999999999999999999999999 33322211112 2455666677788899999999999999988


Q ss_pred             CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011316          272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  351 (488)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL  351 (488)
                      ..+.....   ..+++.+..++++. ++.+..+++.++..+... +.     .-..+++.|.+++.++++.++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            66554421   35678888899888 999999999999988765 33     2234788899999998999999999999


Q ss_pred             HHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHH
Q 011316          352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE  430 (488)
Q Consensus       352 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~  430 (488)
                      ..++... +   ..+ .  ........+. +++..++..++..|..++....             +...      ++.|.
T Consensus       292 ~~l~~~~-~---~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-------------~~~I------l~eL~  345 (526)
T PF01602_consen  292 SQLAQSN-P---PAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN-------------VKEI------LDELL  345 (526)
T ss_dssp             HHHCCHC-H---HHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-------------HHHH------HHHHH
T ss_pred             HHhhccc-c---hhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccccc-------------hhhH------HHHHH
Confidence            9998754 1   121 1  2222333444 7889999999999998876543             1222      33344


Q ss_pred             Hhh-cCCCHHHHHHHHHHHHHhcC
Q 011316          431 NLQ-SHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       431 ~l~-~~~~~~v~~~a~~~l~~~~~  453 (488)
                      ... ...+++++..+...+..+..
T Consensus       346 ~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  346 KYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhhhhhHHHHHHHHHh
Confidence            444 44466677776666655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=8.5e-13  Score=125.16  Aligned_cols=314  Identities=18%  Similarity=0.216  Sum_probs=218.0

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC----ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG----ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~----~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      .+++.|..+|.+++....+.|..+|..+|+++...-+.-....    .++.++++. ++.++.+|..|+.++..+.....
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            3689999999999999999999999999999876433322122    366677777 78899999999999988877655


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ..-......++..+..+-.+++++||...|.++..+....+++...-.. ++++.++...++.+++|...||.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            5555566788888888888899999999999999999766554433333 778888888888899999999999999987


Q ss_pred             CCchhhHHHhh--CCChHHHHHHhcccc----------------------------------------------------
Q 011316          272 GDDMQTQCIIN--HQALPCLLDLLTQNY----------------------------------------------------  297 (488)
Q Consensus       272 ~~~~~~~~~~~--~~~~~~L~~lL~~~~----------------------------------------------------  297 (488)
                      .. -....+..  ..++|.|+.-+...+                                                    
T Consensus       286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            44 22222211  134444443321110                                                    


Q ss_pred             ---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcC----ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316          298 ---KKSIKKEACWTISNITAGNVNQIQAIIEAG----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       298 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~----~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                         ++.+|+-.+.+|.-++        .++...    ++|.|-+.|.++++.+|+.+.-||+.++.++-....+.|-+  
T Consensus       365 ~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--  434 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--  434 (885)
T ss_pred             ccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--
Confidence               0223433333333222        222223    45555555666789999999999999999876555566543  


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      +++.|+.+|.++.+-||...+|.|++....--..+...      -+...+.      -+..-.-+.|.+||++|......
T Consensus       435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~------~f~pvL~------~ll~~llD~NK~VQEAAcsAfAt  502 (885)
T KOG2023|consen  435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE------YFKPVLE------GLLRRLLDSNKKVQEAACSAFAT  502 (885)
T ss_pred             HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh------hhHHHHH------HHHHHHhcccHHHHHHHHHHHHH
Confidence            78999999999999999999999998865433322100      0233332      23333445689999999998887


Q ss_pred             hcCC
Q 011316          451 YWVE  454 (488)
Q Consensus       451 ~~~~  454 (488)
                      +-++
T Consensus       503 leE~  506 (885)
T KOG2023|consen  503 LEEE  506 (885)
T ss_pred             HHHh
Confidence            6543

>PTZ00429 beta-adaptin; Provisional

Probab=99.49  E-value=1.6e-10  Score=117.22  Aligned_cols=370  Identities=13%  Similarity=0.113  Sum_probs=221.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .+.+++++.+++..++....-.+.+.+... ++..  +   -++..|.+=+++++ +.+|..|+++++++-.  ++..+.
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~  140 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY  140 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence            444566666666666666666666654432 2211  1   13566777777887 8889888888888765  333333


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      +     ++.+.+.+.+.++-+|..|+.++..+...+++   .+.+.+.++.+.+++ .+.|+.|+.+|+.+|..+....+
T Consensus       141 l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        141 T-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             H-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence            3     56777888889999999999999998776553   344556777888877 78899999999999999987654


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      . ......+.+..++..+..-++..+...+.+|......++...     ..++..+...|.+.++.|...|+.++.++..
T Consensus       212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            2 233445666677777766677778888888765433222221     2567788888999999999999999998876


Q ss_pred             CC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------
Q 011316          272 GD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-------------------------  325 (488)
Q Consensus       272 ~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------------------------  325 (488)
                      .. +.....+.. .+...++.++ ++ ++.+|..++..+.-++...+.....-++                         
T Consensus       286 ~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan  362 (746)
T PTZ00429        286 RCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT  362 (746)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence            42 222222211 2234455554 34 5677877777776665543432211100                         


Q ss_pred             ----cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          326 ----AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       326 ----~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                          ..++..|.....+.+.+++..++.+++.++..-. ....     .++..|.++++.... +...++.++.+++...
T Consensus       363 e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky  435 (746)
T PTZ00429        363 PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRKY  435 (746)
T ss_pred             cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHHC
Confidence                0123333333444455566666666666654321 1111     245566665554332 2334455555554432


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHh---hcCCCHHHHHHHHHHHHHhcCC
Q 011316          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENL---QSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      +.             ..      .+..|...   ..-.+++.+....|++.+|-+.
T Consensus       436 P~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~  472 (746)
T PTZ00429        436 PE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF  472 (746)
T ss_pred             cc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence            21             00      12222221   1234566777778888888653

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.46  E-value=2e-10  Score=108.27  Aligned_cols=322  Identities=14%  Similarity=0.184  Sum_probs=229.6

Q ss_pred             CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          116 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       116 g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+..++.++.. ..+++.+..+..+..+....+.....+.+.     ....+++.++ ...|..+...++..+..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            456777777765 678899999999999988877665555553     4567788888 567888999999999998876


Q ss_pred             CCCCCh-hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011316          190 KPQPLF-EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~-~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~  265 (488)
                      .+.... ......++.+...++++ +...+..++.++..+...+..+ ..+.+.++++.|+.+|+..  ..+.+..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            532211 12233455666666654 4677778889999998877644 6677888999999999763  45788999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhcC
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA  339 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~l~~L~~ll~~~  339 (488)
                      ++-++...+ ........++++.++++++....+++-+-++.++.|+...+      ......+++.|+.+.+-.+-..+
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            999998544 44555577999999999988778899999999999999842      22334566766666554444333


Q ss_pred             --ChhHHHHHHH-------HHHHhccCC------------------C----HHHHHHHHHC--CChHHHHhhcC-CCCHH
Q 011316          340 --EFEIKKEAAW-------AISNATSGG------------------S----NEQIKFLVSQ--GCIKPLCDLLN-CPDPR  385 (488)
Q Consensus       340 --~~~v~~~a~~-------aL~~l~~~~------------------~----~~~~~~l~~~--~~~~~L~~ll~-~~~~~  385 (488)
                        |+++....-.       -+..+++..                  +    .++...+-+.  .++..|.++|+ +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              5554322111       111122100                  1    1223334343  34788888885 56777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      +...|+.=++.+++.-+..            +..+...|+-+.+.++++|+|++|+..|..+++++.
T Consensus       370 ~laVAc~Dige~vr~~P~g------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         370 ILAVACHDIGEYVRHYPRG------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eeehhhhhHHHHHHHCccH------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8888888888888876543            677889999999999999999999999999998864

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.46  E-value=6.4e-10  Score=112.89  Aligned_cols=294  Identities=14%  Similarity=0.093  Sum_probs=207.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      |-+..|-+.|.+.+...+..+++.+....... .+..      .+++..++++.+++ .++|..+...+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            56777888899988888888888777665543 3322      35677788888888 8999999989999988666543


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      -.     .++.+.+-+.++++.+|..|+++++++-.  +...+.     .+..+.+.+ .+.++-||+.|+.++.++...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     37888888999999999999999999843  222222     345666667 788999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .+  ......++++.+.+++.+.++.|...|+.+|..+....++...  ...+.+..++..+..-++..+...+.+|...
T Consensus       171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            54  2334457888999999999999999999999999876554322  2235567777777776777777777777553


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      .-.++...     ..++..+...|++. ++.|...|+.++.++... +++....... .+-+.++.+ .+++++++..++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence            32222111     24677888889998 899999999999988763 2333333222 123444544 334566666666


Q ss_pred             HHHHHhcc
Q 011316          349 WAISNATS  356 (488)
Q Consensus       349 ~aL~~l~~  356 (488)
                      ..+.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            66655544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.45  E-value=2.6e-12  Score=102.11  Aligned_cols=119  Identities=35%  Similarity=0.621  Sum_probs=110.1

Q ss_pred             HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011316           68 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        68 ~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~  147 (488)
                      .+++.|+++.++++|++++ ++++..++++|.+++...++.+..+.+.|+++.++.++.++++.++..++++|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999998 899999999999999977999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       148 ~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +.....+.+.|.++.+++.+ .+.+..++..++++|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888899999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.44  E-value=8.9e-11  Score=111.98  Aligned_cols=360  Identities=17%  Similarity=0.163  Sum_probs=240.1

Q ss_pred             hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011316           82 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        82 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      +.+.+ |+....|..-..|.+.+.++.+..+++.|.++.++.++..  +.++.......++..++.........+.+.+.
T Consensus        18 L~~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~   96 (678)
T KOG1293|consen   18 LLHLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE   96 (678)
T ss_pred             hhcCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence            34455 6777788888888888888888889999999999999876  56777777788888888777777788889999


Q ss_pred             hHHHHHHhccccc-HhHHHHHHHHHHHhhcCCCCC---ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316          160 LMPLLAQFNEHAK-LSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       160 i~~l~~~l~~~~~-~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      ++.+++++ .++| ..++.....++.++....+..   .......+++.+..++..+...+...-+....+++... +..
T Consensus        97 ll~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq  174 (678)
T KOG1293|consen   97 LLKLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQ  174 (678)
T ss_pred             HHHHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhh
Confidence            99999999 5555 789999999999998876333   33334556666665555344444444555555555444 333


Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh---HhhcCCchhhHHHh----hCCChH--HHHHHhcccc---------
Q 011316          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVG---NIVTGDDMQTQCII----NHQALP--CLLDLLTQNY---------  297 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~~----~~~~~~--~L~~lL~~~~---------  297 (488)
                      ....+.|+.+.+.-++..-+...|..|+.+++   ++...++.....+.    +.++.+  .+.+++++++         
T Consensus       175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~  254 (678)
T KOG1293|consen  175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE  254 (678)
T ss_pred             heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence            44566677777777766666677777777777   55544332222111    112211  1111111110         


Q ss_pred             --------------------------------------------------------------------------------
Q 011316          298 --------------------------------------------------------------------------------  297 (488)
Q Consensus       298 --------------------------------------------------------------------------------  297 (488)
                                                                                                      
T Consensus       255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell  334 (678)
T KOG1293|consen  255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL  334 (678)
T ss_pred             HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------hhhHHHHHHHHHHHHhcCCHHHHHH
Q 011316          298 -------------------------------------------------------KKSIKKEACWTISNITAGNVNQIQA  322 (488)
Q Consensus       298 -------------------------------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~  322 (488)
                                                                             +...+..|+.++.++++.-...+..
T Consensus       335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg  414 (678)
T KOG1293|consen  335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG  414 (678)
T ss_pred             HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                                   0111111122222221110000001


Q ss_pred             HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          323 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       323 l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      +-...+...|++++..++..++..++.+++|+.-.-+ .....+++.|+++.+..++.+++..++..++|+|++++-.++
T Consensus       415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d  493 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD  493 (678)
T ss_pred             CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence            1124578889999988899999999999999986543 456778899999999999999999999999999999976555


Q ss_pred             hhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011316          403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       403 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  456 (488)
                      ...           ...+-.-=+...|..+.++++..|++.+..+++++.-..+
T Consensus       494 e~~-----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  494 EEE-----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHH-----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            432           2222222235778999999999999999999999877633

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.44  E-value=6.4e-11  Score=111.48  Aligned_cols=323  Identities=11%  Similarity=0.073  Sum_probs=228.2

Q ss_pred             cHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHH-----cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011316           31 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  104 (488)
Q Consensus        31 ~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~  104 (488)
                      ....++.+|+ ...+++....+..+..++... +.....+.+     .+....++++|+.++ .-+...|+.+++.+...
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            3455677776 466888888899999988865 444555554     356778888998887 79999999999999874


Q ss_pred             CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-cHhHHHHHHHH
Q 011316          105 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT  182 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~v~~~a~~~  182 (488)
                      .+.........-.++.+...+++ .+...+..++.++..+....+ +|..+.+.++++.|+..+.... +.+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            44322211111123445555554 357888889999999987655 7888888889999999996544 67899999999


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCC--
Q 011316          183 LSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRH--  253 (488)
Q Consensus       183 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~--  253 (488)
                      ++-++...+........+.++.++++++. ..+++..-++.++.|+...+.      .....++..|+++.+-.+...  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            99998886544444457899999999985 578999999999999997531      223445665665545444433  


Q ss_pred             CCcchHhHHHH-------HHhHhhcC--------------Cch---------hhHHHhh--CCChHHHHHHhcccchhhH
Q 011316          254 PSPSVLIPALR-------TVGNIVTG--------------DDM---------QTQCIIN--HQALPCLLDLLTQNYKKSI  301 (488)
Q Consensus       254 ~~~~v~~~a~~-------~L~~l~~~--------------~~~---------~~~~~~~--~~~~~~L~~lL~~~~~~~v  301 (488)
                      .++++....-.       .+..++..              +|.         ....+-+  ..++..|.++|..+.++.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence            34444322111       11112110              111         1122222  2357888999965547888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ..-||.-++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999878878777788999999999999999999999999998864

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=4.6e-11  Score=115.43  Aligned_cols=360  Identities=15%  Similarity=0.110  Sum_probs=238.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVV  112 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~  112 (488)
                      .+++.|++..|...-.|+.++..++.-+ -+.-   ...++++.|+....++....+++.++.+++-+|.+- |+ ...-
T Consensus        94 ~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~  168 (859)
T KOG1241|consen   94 NILRTLGSPEPRRPSSAAQCVAAIACIE-LPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQ  168 (859)
T ss_pred             HHHHHcCCCCCCccchHHHHHHHHHHhh-Cchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHH
Confidence            4677777777877778888888887765 1111   123455666666655553469999999999999843 33 2222


Q ss_pred             HhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          113 IDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       113 ~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ..+.++..++.-.+.  ++..+|-.|+.+|.|-.+.....-..-.+.+.+-..+--.-+++|.+++..|..+|..+..-.
T Consensus       169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly  248 (859)
T KOG1241|consen  169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY  248 (859)
T ss_pred             HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence            234677777776665  788999999999998654322121222233333333322337789999999999999987654


Q ss_pred             CCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch---------------hHHHHHH---hCCHHHHHHhc
Q 011316          191 PQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTND---------------KIQAVIE---AGVCPRLVELL  251 (488)
Q Consensus       191 ~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~---------------~~~~~~~---~~~l~~L~~lL  251 (488)
                      ...-...+ ...+..-+..+++++++|...++..-++++...-+               ....+.+   .+++|.|+++|
T Consensus       249 Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L  328 (859)
T KOG1241|consen  249 YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL  328 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence            11111222 33555566677899999999999999988853221               0011111   15678888888


Q ss_pred             CC-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316          252 RH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       252 ~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      .+       .++.....|-.||.-++......   ++. .+++.+-.-++++ +++-|..|+.+++.+..+.......-+
T Consensus       329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~i  403 (859)
T KOG1241|consen  329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPI  403 (859)
T ss_pred             HhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHH
Confidence            54       23567777777777766532221   222 4555555667788 999999999999999986444444444


Q ss_pred             HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011316          325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      ..+.+|.++.++.++...++..+.|+|+.++................+..+.+-+. +.|.+..+++|++.++.+...+.
T Consensus       404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHh
Confidence            55799999999998888899999999999997654333333333455666666555 46788899999999998655443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.41  E-value=5.9e-12  Score=100.06  Aligned_cols=118  Identities=34%  Similarity=0.507  Sum_probs=109.9

Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011316          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  317 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  317 (488)
                      +.+.|+++.+++++.+.++.++..++++|++++...+.....+.+.++++.+.+++.++ ++.++..++++|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998888888888999999999999998 99999999999999999877


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .....+.+.|+++.+++++...+..+++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            778888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=3.4e-10  Score=110.64  Aligned_cols=343  Identities=14%  Similarity=0.168  Sum_probs=248.6

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+|.|+.+|+. .+.++...|+++|..+..-- +.....+++.++||.|+.-|..-.+-++.++++.+|-.|+...   
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---  286 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---  286 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---
Confidence            457889999986 57999999999999987765 5667788899999999998888777899999999999998833   


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      -..+.+.|.+...+.++.--+...++.|+.+..|.|..- ++--..+++  .++.|..+| ...|....+.++.++..++
T Consensus       287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence            356778899999999998888999999999999998532 122234444  788888888 7778888999999999988


Q ss_pred             cCC-CCC---ChhhhhchHHHHHHhhccC----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC----
Q 011316          188 RGK-PQP---LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----  255 (488)
Q Consensus       188 ~~~-~~~---~~~~~~~~~~~L~~ll~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----  255 (488)
                      ... +..   ......+.+..+.+++.-.    +..+....++.+..++.+.+.....+.+.++...+..+|...+    
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n  443 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN  443 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence            765 222   2233467888888887643    3455667777888888887777777777787777777764311    


Q ss_pred             ----------cchHhHHHHHHhHh------------------------------------------------hc------
Q 011316          256 ----------PSVLIPALRTVGNI------------------------------------------------VT------  271 (488)
Q Consensus       256 ----------~~v~~~a~~~L~~l------------------------------------------------~~------  271 (488)
                                |.-.......+..+                                                ..      
T Consensus       444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~  523 (1051)
T KOG0168|consen  444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT  523 (1051)
T ss_pred             cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence                      00000000000000                                                00      


Q ss_pred             --------------------CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC-Ch
Q 011316          272 --------------------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG-II  329 (488)
Q Consensus       272 --------------------~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~-~l  329 (488)
                                          ..++..+.+.. .+++.|+++..+..++.||+.++.+|..+.. .+.+.+..++... +-
T Consensus       524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS  602 (1051)
T KOG0168|consen  524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS  602 (1051)
T ss_pred             ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence                                00111111111 4678888888887799999999999999988 6788888887644 44


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316          330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  380 (488)
                      ..+-.+|.+++..+..-|+...--++..-..-+...+...|++..+-++..
T Consensus       603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            566678888888887777777777776555556677778888888888766

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.4e-09  Score=105.49  Aligned_cols=329  Identities=14%  Similarity=0.144  Sum_probs=220.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+|.+-+.++++|-.-+..|+.++..++.+. .+....-+..+++|.+++++.++. .-++..++|+|+.++...++.+.
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence            4566666888999999999999999998875 444555556789999999999887 78999999999999997765443


Q ss_pred             H-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh-----HHHHHhcCChHHHHHHhc------ccccHhHHHH
Q 011316          111 V-VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFN------EHAKLSMLRN  178 (488)
Q Consensus       111 ~-~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~------~~~~~~v~~~  178 (488)
                      - ....+.++.++.-|. +.|.+..+++|++.+|+..-++.     ...... ...+.++.-|.      +.....+|..
T Consensus       443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence            2 223344555555554 46899999999999998321110     000111 23334443332      2235578899


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhh----c-----cCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316          179 ATWTLSNFCRGKPQPLFEQTRPALPALERLI----H-----SND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       179 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~-----~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      +..+|..+....+........+....+..-|    +     ..+    .+++...+.+|..+.+.....+..+.+ .++.
T Consensus       521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~  599 (859)
T KOG1241|consen  521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG  599 (859)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence            9999999998886666555555555444422    1     111    356667777777776544433343443 5778


Q ss_pred             HHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316          246 RLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       246 ~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      .+++++.+ .+..+.+.|+.+++.++..-.......+. .+.|.|..-|++..+..|...|...++.+++.-.+.+....
T Consensus       600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~  678 (859)
T KOG1241|consen  600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC  678 (859)
T ss_pred             HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            88888887 45567888888888888754443333333 57788888886655888999999999999885344444433


Q ss_pred             HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011316          325 EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFL  366 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l  366 (488)
                      + +++..|+..|+++  +.+||-..+.+++.++.....+..+++
T Consensus       679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl  721 (859)
T KOG1241|consen  679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL  721 (859)
T ss_pred             H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence            3 4788888888887  566777777777777765444444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.28  E-value=1.5e-09  Score=104.77  Aligned_cols=388  Identities=14%  Similarity=0.165  Sum_probs=249.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+.+++..++++.+..+..++....++...-+....+.-.++-.+..++..++..+. ..+-......+.+-...    
T Consensus       716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----  791 (1172)
T KOG0213|consen  716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----  791 (1172)
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----
Confidence            3466778888899999999999998888776544444554555667777777766542 22333333333332221    


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH--HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD--LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      |-+-.-.-++..++..|++.++.+|..++..++.++..-..+.+  .+-..|.  .|...| ....+++.-..+.++..+
T Consensus       792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence            11111123467778889999999999999999998743222211  2222222  355666 677888888888888877


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316          187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      .... -.....-..+++|.|..+|++...+++++++..++.++...++....---..+.--|+.+|...+.++|++|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7654 222333457899999999999999999999999999998776543321112334446677777778899999998


Q ss_pred             HhHhhcCCc--hhhHH---------------------Hh-h-C---CChHHHHHHhcccchhhHHHHHHHHHHHHhcC-C
Q 011316          266 VGNIVTGDD--MQTQC---------------------II-N-H---QALPCLLDLLTQNYKKSIKKEACWTISNITAG-N  316 (488)
Q Consensus       266 L~~l~~~~~--~~~~~---------------------~~-~-~---~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~  316 (488)
                      ++.++..-.  +....                     ++ + +   .++|.|+.=-..+ +..|+...+.+++.+... .
T Consensus       949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen  949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred             hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence            888875311  00000                     00 1 1   2345555545566 777888888888877652 1


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-------CCCHHHHHH
Q 011316          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-------CPDPRIVTV  389 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-------~~~~~v~~~  389 (488)
                      ....+++..  +.|.|-..|.+.|..-|+.|+.++.+++.+..-        .|..+.++.+|+       ++.|.++..
T Consensus      1028 emskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g--------~g~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1028 EMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG--------TGCEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred             HHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC--------cCcHHHHHHHHHHhhhhhcCCChHHHHH
Confidence            222333333  688888888888999999999999999876421        244444444443       456777777


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ..+++..+-..                   +...-.++.+.+-+=|+...|++....+.+.++-.
T Consensus      1098 ~~e~~eg~r~~-------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1098 FDEAMEGLRVA-------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred             HHHHHHHHHHH-------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhc
Confidence            76666655322                   22222355666667788889998888888776544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=3.7e-08  Score=95.17  Aligned_cols=220  Identities=15%  Similarity=0.172  Sum_probs=163.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.-+.++.+|.+.-+-+|..|+-.+.++.-.- ++..+     ..+|.|++-|.+++ |.++-.|+.+++.++..+|.+.
T Consensus       144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence            55667889999999999999999999876554 22222     46899999999999 9999999999999999888765


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      -.+     -|.+.++|.. .+.=+.-..+..+++|+.-.|...+.     .++++..++....-.++...++.++.....
T Consensus       217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            543     4777887765 34444455778888888777765444     578999999544445566666655543322


Q ss_pred             CCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          189 GKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ... ........-+++.|-.++.+.|+.++.-.+.+++.+....+...+     ..-+.++++|.+.++++|..|+..+.
T Consensus       287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHH
Confidence            111 133344456777888888899999999999999999977665544     33477899999999999999999998


Q ss_pred             Hhhc
Q 011316          268 NIVT  271 (488)
Q Consensus       268 ~l~~  271 (488)
                      .+..
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            8875

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.19  E-value=7e-08  Score=87.99  Aligned_cols=322  Identities=15%  Similarity=0.175  Sum_probs=219.4

Q ss_pred             CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHH------HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       117 ~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .+..++.+++. ..++....++..+..+-..++.....+      .....-...+.++ ...+.-+.....+.++.++..
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence            45677777776 456666777777776655443221111      1122355677777 566677777788999888876


Q ss_pred             CCCCChh-hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-C-CCcchHhHHHHH
Q 011316          190 KPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H-PSPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~~-~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~-~~~~v~~~a~~~  265 (488)
                      ....... ...-....+...+.+ .+......+.+||..+...++.+. .++..+++..++..+. + .+-.++...+.|
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~-~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY-AFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh-eeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            6322222 223344455556655 577788889999999998876554 4555677788888773 3 456888999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhcC
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV------NQIQAIIEAGIIGPLVNLLLNA  339 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~l~~L~~ll~~~  339 (488)
                      ++.|+. ++...+.+...+.++.|..++++...++|-+-.+.++.|+....+      +....++..++.+.+-.+-+.+
T Consensus       224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            999988 455556667789999999999988788899999999999998653      4445566777777665555544


Q ss_pred             --ChhHHHHHHH-------HHHHhccCC-------------C---------HHHHHHHHHC--CChHHHHhhcCCCC-HH
Q 011316          340 --EFEIKKEAAW-------AISNATSGG-------------S---------NEQIKFLVSQ--GCIKPLCDLLNCPD-PR  385 (488)
Q Consensus       340 --~~~v~~~a~~-------aL~~l~~~~-------------~---------~~~~~~l~~~--~~~~~L~~ll~~~~-~~  385 (488)
                        |+++....-.       ....+++..             +         .++...+.+.  .+++.|+.+|+.++ |.
T Consensus       303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~  382 (442)
T KOG2759|consen  303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI  382 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence              5544322221       112222110             0         1223333333  35888888888654 77


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +...|+.=++.++..-+..            +..+...||-+.+.++++++|++|+..|...+.++..
T Consensus       383 iL~VAc~DIge~Vr~yP~g------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  383 ILCVACHDIGEYVRHYPEG------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             eeehhhhhHHHHHHhCchH------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            7788888888888877643            7889999999999999999999999999998887643

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.18  E-value=4e-09  Score=95.89  Aligned_cols=280  Identities=13%  Similarity=0.091  Sum_probs=203.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .+..+..|...+.-+...+.+.+..+++.. +.........=....|...++++.+++...-|++||..+.. -++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            667888999999888888999999988765 22221111111234455566664447888889999999998 8999999


Q ss_pred             HHhCCCHHHHHHhh-CC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          112 VIDHGAVPIFVRLL-SS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       112 ~~~~g~i~~L~~lL-~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ++..+++..++..+ ++ .+..++-..+.+++.++.+++. .+.+...+.++.+...+..+..+.|.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99988899999988 33 6789999999999999877654 466677889999999998888999999999999999987


Q ss_pred             CCCCCh------hhhhchHHHHHHhhcc---CChhHHHHHHHHHH-------HhccC---------------Cch-----
Q 011316          190 KPQPLF------EQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSDG---------------TND-----  233 (488)
Q Consensus       190 ~~~~~~------~~~~~~~~~L~~ll~~---~~~~v~~~al~~L~-------~l~~~---------------~~~-----  233 (488)
                      .+....      .....-++..++.|..   .|+++....-..-.       .++.-               +..     
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            742221      1123334444455543   24544433222211       11111               111     


Q ss_pred             ---hHHHHHHh--CCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011316          234 ---KIQAVIEA--GVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       234 ---~~~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                         +...+.+.  .++..|+.+|+.+ +|.+..-|+.=++...++.|+....+.+.|+-+.++++++++ +++||.+|+.
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence               11112221  4788899999775 588889999999999999999999888999999999999999 9999999999


Q ss_pred             HHHHHhcC
Q 011316          308 TISNITAG  315 (488)
Q Consensus       308 ~L~nl~~~  315 (488)
                      ++..+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            98877653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.4e-08  Score=97.75  Aligned_cols=372  Identities=16%  Similarity=0.200  Sum_probs=218.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +..|.+.+.|++.++-+|..|+-+..++..+. ++..     +.+++...++|.+.+ +-+...++..+..+|..+++..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~-----e~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l  214 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLV-----EHFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDAL  214 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHH-----HHhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHH
Confidence            55667777777788888888887777776654 2222     235566667777777 6777777777777777666655


Q ss_pred             HHHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--c
Q 011316          110 RVVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--K  172 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~  172 (488)
                      ..+.+  .++.|+..|+.               ++|-++...++.|.-+-.+++...+.+-+  ++..+..--..+.  -
T Consensus       215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~G  290 (866)
T KOG1062|consen  215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAG  290 (866)
T ss_pred             HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccch
Confidence            55543  44444444421               46777888888888777776654444322  1111111110001  1


Q ss_pred             HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316          173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  252 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  252 (488)
                      ..+...++.++..+-.+.     ....-++..|-++|.+.|..++.-++..|..+...++...+.     .=..++++|+
T Consensus       291 nAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~  360 (866)
T KOG1062|consen  291 NAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLK  360 (866)
T ss_pred             hHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhc
Confidence            234444555554443322     122345666777777888888888888888888777654442     2256788899


Q ss_pred             CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHH------H-
Q 011316          253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAI------I-  324 (488)
Q Consensus       253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l------~-  324 (488)
                      +++..+++.|+..+..+...  ...+.     .+..++..|.+. +++.|...+.-+..++.. .++.+..+      + 
T Consensus       361 DpD~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~  432 (866)
T KOG1062|consen  361 DPDVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK  432 (866)
T ss_pred             CCcHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence            99999999999888777753  33332     355678888777 888888888888877762 23322221      1 


Q ss_pred             ------HcCChHHHHHHHhcC-------------------------ChhHHHHHHHHHHHhc----cCCCHHHHHHHHHC
Q 011316          325 ------EAGIIGPLVNLLLNA-------------------------EFEIKKEAAWAISNAT----SGGSNEQIKFLVSQ  369 (488)
Q Consensus       325 ------~~~~l~~L~~ll~~~-------------------------~~~v~~~a~~aL~~l~----~~~~~~~~~~l~~~  369 (488)
                            ...++..+++++.+.                         .+.+.+-|.|+++.-.    .+...+.-...-+.
T Consensus       433 ~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtes  512 (866)
T KOG1062|consen  433 TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTES  512 (866)
T ss_pred             hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHH
Confidence                  233566666666654                         1223444555554432    11000111112234


Q ss_pred             CChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 011316          370 GCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI  447 (488)
Q Consensus       370 ~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~  447 (488)
                      .++..|.+++.+  .+..++..++.++.++........            +.+     -+.+..+-.+-+-++|++|...
T Consensus       513 divd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~------------~ri-----~~lI~~~~~s~~~elQQRa~E~  575 (866)
T KOG1062|consen  513 DIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSS------------ERI-----KQLISSYKSSLDTELQQRAVEY  575 (866)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccH------------HHH-----HHHHHHhcccccHHHHHHHHHH
Confidence            567777777663  456778888888888765544211            111     1234445566677787777653

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=6.8e-08  Score=94.33  Aligned_cols=326  Identities=14%  Similarity=0.179  Sum_probs=240.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCc--
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP--  148 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~--  148 (488)
                      ..|+.|+.-..+..-.+-|..|++.|..+++   ++|..+...| +++|+..|+.  .++++...++.++.++..+.+  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            3578888888777667889999999999987   7888887766 8999999987  689999999999999986542  


Q ss_pred             ----h----------hHHH-HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhc
Q 011316          149 ----K----------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIH  210 (488)
Q Consensus       149 ----~----------~~~~-~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~ll~  210 (488)
                          .          +.+. +...+.+..++..+ ...|-.||..++..+.++....+....   .....++..++.+|+
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                1          1112 33445677777777 777889999999999999887743322   233678999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011316          211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQAL  286 (488)
Q Consensus       211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  286 (488)
                      +....+|..++..|..++..++...+.+.-.+++..|+.++..+.    .-|...++..|.|+...+......+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            999999999999999999988766565555689999999997632    3578889999999999888888888899999


Q ss_pred             HHHHHHhcccc--h-----h---hH--HHHHHHHHHHHhc-CCH-----HHHHHHHHcCChHHHHHHHhcC--ChhHHHH
Q 011316          287 PCLLDLLTQNY--K-----K---SI--KKEACWTISNITA-GNV-----NQIQAIIEAGIIGPLVNLLLNA--EFEIKKE  346 (488)
Q Consensus       287 ~~L~~lL~~~~--~-----~---~v--~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~  346 (488)
                      +.|.++|....  +     +   ++  ...++.++..++. +++     .+...+...+++..|+.++.++  ..+++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            99998874321  1     1   11  2356666676766 222     2224566789999999999887  5578899


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCC----------ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 011316          347 AAWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~----------~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      +..+++++..++. ..-..+....          ++-.++.+..+ .....|.+++.++..++..+...
T Consensus       337 siitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  337 SIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999988653 2233333211          12233333333 34578888888988887666544

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.4e-08  Score=91.23  Aligned_cols=188  Identities=20%  Similarity=0.232  Sum_probs=157.5

Q ss_pred             ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      +.+-+..++.-|..++..-++ ...+++.|++..++..+++.+..+|..|+++|+.++..++.....+++.++++.|+.+
T Consensus        96 ~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            566677888888888876654 3568888999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                      +.+..+..+|..|+++++++.++++.....+...+.+..|...++++  +..++..++..+..++.... .....+...+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~~  253 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSLG  253 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHhh
Confidence            98876788899999999999998888888888888899999999994  77788999999999987542 2333445557


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ....+..+....+.++.+.++.++..++..-.
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            77777778788888888888887777665433

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.8e-09  Score=94.88  Aligned_cols=184  Identities=18%  Similarity=0.212  Sum_probs=153.6

Q ss_pred             ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316           87 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        87 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  166 (488)
                      +.+-++.|+.-|..++. +-++...+...|++..++..+++.+..+|+.|+++|+..+.++|..+..+++.|+++.|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            37889999999999998 77888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011316          167 FNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  243 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  243 (488)
                      +..+.+..++..|+.+++.+.++. +........++...|...+.+  .+...+..++..+..+..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            977777889999999999999988 444444445669999999998  56788899999999998766544443444455


Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          244 CPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ...+..+....+.++.+.++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            5666666666777888888877766655

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.2e-07  Score=93.30  Aligned_cols=331  Identities=15%  Similarity=0.170  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHHHHhccCCCccHH----HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHH
Q 011316           45 NIQLDATTQFRKLLSIERSPPIN----EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI  120 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~----~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  120 (488)
                      .-...++.+|.++++.. ++...    +..--|.++.+..++.....+.++..|+.++..+.. +.++...++..|.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            34557899999998875 33322    222347788888888776558999999999988887 8899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhh
Q 011316          121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQ  197 (488)
Q Consensus       121 L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~  197 (488)
                      |+.+|++ -|..|+.++.+|+.+++... .....++.|++..+..++..+++++.+.+++..+..+..++   |...+..
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999977 57889999999999987654 56677788999999999888889999999999999998876   3333333


Q ss_pred             hhchHHHH-----------HHhhcc--CChh------HHHHHHHHHHHhccC-------Cc-------hh----------
Q 011316          198 TRPALPAL-----------ERLIHS--NDDE------VLTDACWALSYLSDG-------TN-------DK----------  234 (488)
Q Consensus       198 ~~~~~~~L-----------~~ll~~--~~~~------v~~~al~~L~~l~~~-------~~-------~~----------  234 (488)
                      +.-.-..+           +.++..  ++++      .+...-..+..+...       ++       ++          
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            32222233           333332  2222      223333333333210       00       00          


Q ss_pred             --------HHHH------------HHhCCHHHHHHhcCCCCcc--hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          235 --------IQAV------------IEAGVCPRLVELLRHPSPS--VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       235 --------~~~~------------~~~~~l~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                              ...+            +-.++++.+.+++..+.++  ....-..++..+.+..+....++-..|.++.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    0000            1113566666666654432  22223334445556677777777788999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011316          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  372 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~  372 (488)
                      +... +..+-..|+++|..++.+ .-..+.+.....+..++..+... .....-|+.+|..+......+...+....|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            8777 666778999999999875 55666676666677777776664 44556899999999887766777777888999


Q ss_pred             HHHHhhcCCC
Q 011316          373 KPLCDLLNCP  382 (488)
Q Consensus       373 ~~L~~ll~~~  382 (488)
                      +.|.++|+..
T Consensus      2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHhccc
Confidence            9999999853

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.10  E-value=2.5e-09  Score=101.27  Aligned_cols=400  Identities=13%  Similarity=0.106  Sum_probs=235.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+..+++.++.+.+..+..++.....+.+.-+....++-.++..+..++..++..+. .+. ..+.+++.+.. +.+.|-
T Consensus       522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~-t~~-~il~~f~tv~v-sl~~r~  598 (975)
T COG5181         522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT-TVG-LILPCFSTVLV-SLEFRG  598 (975)
T ss_pred             HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc-ccc-EEEecccceee-ehhhcc
Confidence            444555555666666666666666555543322223333334445555555554441 111 11222222222 222222


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH--HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +-.-.-++..++..|+++.+.+|..|+...+.++..-..|.  +.+...|.  .|.+.+ ....+++.-..+.+++.+..
T Consensus       599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~s  675 (975)
T COG5181         599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYS  675 (975)
T ss_pred             CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhh
Confidence            22222457788889999999999999999988863211111  12222222  345555 56788888888888887766


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          189 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..... -..-..+++|.+..+|++...++....+..++.++...++.+..---..+.--|+..|.+-+.++|++|..+++
T Consensus       676 v~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG  755 (975)
T COG5181         676 VHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG  755 (975)
T ss_pred             hhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence            54222 22245789999999999999999999999999999877654322111233445677777888899999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      .++..-.       ...++..|+.-|+.. +...|.....+++-.+..+..       -.++|.|+.=...++..|+.-.
T Consensus       756 ~Is~aiG-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGv  820 (975)
T COG5181         756 CISRAIG-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGV  820 (975)
T ss_pred             hHHhhcC-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhH
Confidence            8876322       223455566666555 444444444444444332111       1367888877777888999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh------------------------
Q 011316          348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA------------------------  403 (488)
Q Consensus       348 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~------------------------  403 (488)
                      +.+++.+..........++..  ..+.|.+.+.+.|+--+..+...+..+.-.+..                        
T Consensus       821 Lkam~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPh  898 (975)
T COG5181         821 LKAMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPH  898 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcH
Confidence            999999987655444555443  567777788877776666666666555322110                        


Q ss_pred             hhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          404 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       404 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .... ..++-..+...+...-.+..+.+-+-|++..|+.+.....+..+-.
T Consensus       899 vi~~-~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~  948 (975)
T COG5181         899 VIQS-FDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF  948 (975)
T ss_pred             HHHH-HHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence            0000 0000001122222112355566667788888988887777776654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.1e-07  Score=93.35  Aligned_cols=366  Identities=13%  Similarity=0.118  Sum_probs=227.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+.+.|++++.-++-.|+.+|.++.+.+   ..     .++.|.+.++|++.+ +.+|..|+.|...+....|+..+.+ 
T Consensus       111 slknDL~s~nq~vVglAL~alg~i~s~E---ma-----rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-  180 (866)
T KOG1062|consen  111 SLKNDLNSSNQYVVGLALCALGNICSPE---MA-----RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-  180 (866)
T ss_pred             HHHhhccCCCeeehHHHHHHhhccCCHH---Hh-----HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence            3445556777777777777777766532   22     245677778888877 8888888888888887677665544 


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhHHHHH
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSMLRNA  179 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~v~~~a  179 (488)
                          ++...++|.+.+..+....+..+..+|..+++.-..+.+  .++.++..|++              -++|-++..+
T Consensus       181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i  254 (866)
T KOG1062|consen  181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI  254 (866)
T ss_pred             ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence                566677777777777777777777777666544333333  44555555421              1356777777


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011316          180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       180 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      ++.|.-+.++++. ....+..++..+..-..+.   -..+...+..++..+-....-+ .     -++..|-++|.+.+.
T Consensus       255 LrlLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr-v-----lainiLgkFL~n~d~  327 (866)
T KOG1062|consen  255 LRLLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR-V-----LAINILGKFLLNRDN  327 (866)
T ss_pred             HHHHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH-H-----HHHHHHHHHhcCCcc
Confidence            8777777776522 2222222222222222111   1455666666666665443311 1     235667777777788


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011316          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  336 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll  336 (488)
                      .+|.-|+..|.......+...+.     --..+++.|+++ +..+|+.|+..+..+...  .++..     ++..|+.+|
T Consensus       328 NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL  394 (866)
T KOG1062|consen  328 NIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFL  394 (866)
T ss_pred             ceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHH
Confidence            88888888888888766654432     235688999999 999999999988888764  22222     466788999


Q ss_pred             hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh-hhhhccCCCCccch
Q 011316          337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG-EAEKNMGNTGGVNL  415 (488)
Q Consensus       337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~  415 (488)
                      ...+++++...+.-+..++..-.++.+-+      ++.+...++..-.-+...+...+..++..+ ...+..       .
T Consensus       395 ~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y-------~  461 (866)
T KOG1062|consen  395 ESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY-------A  461 (866)
T ss_pred             HhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH-------H
Confidence            98899999999999999987766655544      566667777665555555555555555443 211110       0


Q ss_pred             HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          416 FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       416 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      +.+.....    ....++.-..+.+.+-|.|+|.+|=
T Consensus       462 ~~rLy~a~----~~~~~~~is~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  462 VLRLYLAL----SEDTLLDISQEPLLQVASWCIGEYG  494 (866)
T ss_pred             HHHHHHHH----hhhhhhhhhhhhHHHHHHHHhhhhh
Confidence            11111100    0011233344556888999998876

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.08  E-value=2.9e-09  Score=99.15  Aligned_cols=226  Identities=18%  Similarity=0.267  Sum_probs=159.4

Q ss_pred             HHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHh------cCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          118 VPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       118 i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ...++.+|+  +.++++...++..+..+..+.+...+.+..      .....++++++ ..+|..++..++..+..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            444555554  368999999999999999888876666554      22577888877 677999999999999999988


Q ss_pred             CCCCChhhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc------CC-CCcch
Q 011316          190 KPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL------RH-PSPSV  258 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~-~~~~v  258 (488)
                      .+........+.++.++..+.+    ++.+++..++.++.++..... ....+.+.++++.+..++      .+ ....+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            7555555445666777766654    456678999999999987654 557788889999999999      22 34678


Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHh
Q 011316          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~ll~  337 (488)
                      +..++.+++.++. ++.....+.+.++++.+.++++....+++-+-++.++.|+.....+ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8999999999988 5566677778889999999998877889999999999999985443 6777888777776666555


Q ss_pred             cC--ChhHHHH
Q 011316          338 NA--EFEIKKE  346 (488)
Q Consensus       338 ~~--~~~v~~~  346 (488)
                      .+  |+++...
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            44  7776543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.1e-08  Score=100.04  Aligned_cols=382  Identities=16%  Similarity=0.191  Sum_probs=256.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...|.+++++...|-+++...--.+.+.+...+ +     ...+++..+++=..+++ +.+|..|++.++.+-.  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P-~-----~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKP-D-----LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCc-h-----HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            456778888888887777777777777666542 1     12356777888888888 8999998888877654  2222


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .     -+...+.+.+++.++.+|..+.-+..++-..++   +.+...|.+..|-.++ .++++.|..+|+.+|..+...
T Consensus       120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            2     236888999999999999999999999876554   4677788888888888 688999999999999999988


Q ss_pred             CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          190 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+. .........+..++..+..-+..-+...+.++.+-...++....     .++..+...|.+.++.+...+...+.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 33444456666666666655666666666666666555442223     456777788888888888888888888


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-------------------------
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-------------------------  323 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-------------------------  323 (488)
                      +......... .+-..+-+.++.++.+. . .++..+..-+.-+....++....-                         
T Consensus       266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            7765444222 22235566667777666 4 555555554444443333311100                         


Q ss_pred             HH-c---CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          324 IE-A---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       324 ~~-~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      .. .   .++..+...-..-|.+...++.+|+++++......       .+++..|.++++.....++..+...++.++.
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            00 0   13333344444457888899999999998754221       4789999999998888888888888888887


Q ss_pred             hhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011316          400 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP  460 (488)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~  460 (488)
                      +.+..           +.......     -..+-+-++|+.+....|++.+|-+.=++.++
T Consensus       416 kyP~~-----------~~~vv~~l-----~~~~~sl~epeak~amiWilg~y~~~i~~a~e  460 (734)
T KOG1061|consen  416 KYPNK-----------YESVVAIL-----CENLDSLQEPEAKAALIWILGEYAERIENALE  460 (734)
T ss_pred             cCCCc-----------hhhhhhhh-----cccccccCChHHHHHHHHHHhhhhhccCcHHH
Confidence            76643           22222111     11222335778888888888887776555444

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.02  E-value=1.4e-08  Score=94.70  Aligned_cols=227  Identities=14%  Similarity=0.188  Sum_probs=162.3

Q ss_pred             hHHHHHHhccc-ccHhHHHHHHHHHHHhhcCCCCCChhhh-------hchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          160 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       160 i~~l~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-------~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      ...++.++... ++.++..+++..+..+....+.......       ......+++++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            45566666555 7888999999999999888754433222       124667777888999999999999999999776


Q ss_pred             chhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhH
Q 011316          232 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI  301 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v  301 (488)
                      +....... .+.++.+++.+.+    ++..++..++.++.++.. .+..+..+.+.++++.+.+++      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            65544322 3556666666654    445677899999999987 667888888999999999999      45547889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316          302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  380 (488)
                      +++++.++.-++.. ++....+.+.++++.|.++++.. .+++.+-++.++.|++..........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            99999999999876 77788888888999999999876 77899999999999998876557888888888887777665


Q ss_pred             --CCCHHHHHH
Q 011316          381 --CPDPRIVTV  389 (488)
Q Consensus       381 --~~~~~v~~~  389 (488)
                        .+|+++.+.
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              367777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.02  E-value=9.9e-07  Score=85.84  Aligned_cols=407  Identities=14%  Similarity=0.115  Sum_probs=243.8

Q ss_pred             hhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC------
Q 011316           12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD------   85 (488)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~------   85 (488)
                      ..|..|...-..+-....+.+-.+++-..|+|++.+.-.+..+.+++..+  ......+....+|.++......      
T Consensus       618 igyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~dr  695 (1172)
T KOG0213|consen  618 IGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDR  695 (1172)
T ss_pred             HhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccc
Confidence            45555554333332233366777888888999999999999999987765  3334455667777777654321      


Q ss_pred             -CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHH
Q 011316           86 -DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMP  162 (488)
Q Consensus        86 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~  162 (488)
                       ++..+...+.           +....+.....+..++.-+.++++..|..++.++.++...-+  .+-... +...+..
T Consensus       696 r~ykqlv~ttv-----------~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidg  763 (1172)
T KOG0213|consen  696 RNYKQLVDTTV-----------EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDG  763 (1172)
T ss_pred             cchhhHHHHHH-----------HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHH
Confidence             1111222222           122222223346666667778888888888887777753321  111111 1223444


Q ss_pred             HHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh--HHHHH
Q 011316          163 LLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK--IQAVI  239 (488)
Q Consensus       163 l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~  239 (488)
                      ++..+. ++....+.-....++++-...   ........++..++..|++..+.++..++..++.++.--...  .+.+.
T Consensus       764 il~Afqeqtt~d~vml~gfg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~  840 (1172)
T KOG0213|consen  764 ILYAFQEQTTEDSVMLLGFGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMG  840 (1172)
T ss_pred             HHHHHHhcccchhhhhhhHHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            444442 233344544555555443322   223345667788889999999999999999999887321111  12222


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011316          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  319 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  319 (488)
                      ..|  -.|.+.|....+++.-..+.++..++..-.-....---.+++|.|..+|++. ..+++..++..++.++...++.
T Consensus       841 ~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~  917 (1172)
T KOG0213|consen  841 HLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEY  917 (1172)
T ss_pred             Hhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCccc
Confidence            223  3467778888899888877777776642111100001237899999999999 9999999999999999754442


Q ss_pred             HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHH-HHHHHHH-----------------------C---CCh
Q 011316          320 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVS-----------------------Q---GCI  372 (488)
Q Consensus       320 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~-----------------------~---~~~  372 (488)
                      ...--=..+--.|+++|...+.++|..|...++.++..-.+. ....|.+                       .   .++
T Consensus       918 v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVL  997 (1172)
T KOG0213|consen  918 VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVL  997 (1172)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhh
Confidence            110000113334777888888899999999999988654332 2222221                       1   235


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316          373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      +.|++=...++..++.-++.++..++.+-......        |...+     ...|++-+-+.+.--++.|..++..+
T Consensus       998 PalmneYrtPe~nVQnGVLkalsf~Feyigemskd--------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen  998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD--------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh--------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence            56666556777889999999999998875543321        22222     34455555555555566666655554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.98  E-value=2.1e-07  Score=92.71  Aligned_cols=352  Identities=14%  Similarity=0.130  Sum_probs=225.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .|++.+.++|.+.|..|+.-|.+-+.+. .-..+.--+..++..++++|.+.+ .++|..|.+|++-+++.-++.+-.- 
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~-   85 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLET-   85 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHH-
Confidence            6889999999999999999988877654 233333334567889999999999 9999999999999997555443322 


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh----cc-cccHhHHHHHHHHHHHhhc
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NE-HAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~-~~~~~v~~~a~~~L~~l~~  188 (488)
                         .++.|..-+-++....|..+.-.|.....+-+..........+.+.+...+    .. .....++..++..+.-+..
T Consensus        86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence               255565554444555555444433333222221222222333334444333    22 2334467777777766554


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~  267 (488)
                      ....--...-.+.+..++.-+.++...++..++.+|+.++...+..   .. .+++..+.+-|.. ..+...+.-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            4322222244566677777778888999999999999999654421   11 2556667766655 34555666778888


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----  339 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----  339 (488)
                      .+++........- -..+++.+.+..   ... +.++|+.+..++..+....+..+-..+. .++..+++.+..+     
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            8887544322211 125677777777   555 7889999999999988866655443332 2444444444310     


Q ss_pred             -----------------------------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316          340 -----------------------------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       340 -----------------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  390 (488)
                                                   ++.||+.|+.++..+... ..+....+.+ .+-+.++.-+++.++.|+.-.
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                         257999999999999874 3455555544 567788888888888888888


Q ss_pred             HHHHHHHHHh
Q 011316          391 LEGLENILKA  400 (488)
Q Consensus       391 l~~L~~l~~~  400 (488)
                      ..++..++..
T Consensus       394 f~~yi~ll~q  403 (1233)
T KOG1824|consen  394 FHAYIALLKQ  403 (1233)
T ss_pred             HHHHHHHHHc
Confidence            8777777653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.95  E-value=1.5e-07  Score=88.76  Aligned_cols=353  Identities=13%  Similarity=0.044  Sum_probs=213.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVV  112 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~  112 (488)
                      ..++.|++..|..-..|+..+..++.-+ -+..   ...|.+..++...-.+.....+..++.++++++... |+.....
T Consensus        98 ~al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~---~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~  173 (858)
T COG5215          98 MALRALKSPEPRFCTMAAQLLAAIARME-LPNS---LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM  173 (858)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHhh-Cccc---cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence            4677788888888888888888887655 1111   123445555555555554678899999999999832 3222222


Q ss_pred             HhCCCHHHHHH-hhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh-HHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          113 IDHGAVPIFVR-LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       113 ~~~g~i~~L~~-lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                       .+.++-.++. .++. ++..+|-.++.+|.+-+....+.-..-.+.+.+ +.....- +.++.+++..+..+|..+..-
T Consensus       174 -sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~kim~L  251 (858)
T COG5215         174 -SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKIMML  251 (858)
T ss_pred             -hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHHHHH
Confidence             2233334433 4444 678899999999988332111110111111222 2222222 778999999999999988654


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHH-------------HHH---HhCCHHHHHHhcC
Q 011316          190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ-------------AVI---EAGVCPRLVELLR  252 (488)
Q Consensus       190 ~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-------------~~~---~~~~l~~L~~lL~  252 (488)
                      . ...+.....-........+++++.++...+...-..++...-+..-             -+.   -.+++|.|+++|.
T Consensus       252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~  331 (858)
T COG5215         252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE  331 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence            3 1112222233444555677899999999998888777753211100             011   1257889999986


Q ss_pred             C-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316          253 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       253 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      .       .++.+...|..||.-++....   ..+++ .++..+-.-++++ ++.-|..|+.+++.+..+..+....-+-
T Consensus       332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V  406 (858)
T COG5215         332 KQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV  406 (858)
T ss_pred             hcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence            5       235677777777766654222   22222 2555555667778 8999999999999999864443333333


Q ss_pred             cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhh
Q 011316          326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ...+|.+...+.++...++..++|+++.++..-    ...+...+-+...+...-   .+.+.+..++.|...+++..-
T Consensus       407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~  481 (858)
T COG5215         407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI  481 (858)
T ss_pred             HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence            468999999888888889999999999998532    111111222222222111   234556666777777776543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.94  E-value=3.9e-07  Score=86.05  Aligned_cols=361  Identities=12%  Similarity=0.069  Sum_probs=222.1

Q ss_pred             hccHHHHHHHhc----CC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           29 LESLPAMVAGVW----SD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        29 ~~~i~~l~~~L~----s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      .+..|.+++.|.    .+ ....+..++.++..++....++.....-+.-.+......++.+.+..+|..|+.+|.+-+.
T Consensus       128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~  207 (858)
T COG5215         128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM  207 (858)
T ss_pred             cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence            355666666553    33 3577888899999887765332222222222233333445555557899999999887332


Q ss_pred             C------CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHH
Q 011316          104 G------TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR  177 (488)
Q Consensus       104 ~------~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~  177 (488)
                      .      .++.|+.     ++...+..-+.++.+++..+..+|..+..-...+.+..++.-......+.+ ++++.++..
T Consensus       208 fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~  281 (858)
T COG5215         208 FVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAI  281 (858)
T ss_pred             HHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHH
Confidence            1      1222222     345556667779999999999999998754433334444432233333444 788889998


Q ss_pred             HHHHHHHHhhcCCCCCC-----------------hhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCch
Q 011316          178 NATWTLSNFCRGKPQPL-----------------FEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTND  233 (488)
Q Consensus       178 ~a~~~L~~l~~~~~~~~-----------------~~~~~~~~~~L~~ll~~-------~~~~v~~~al~~L~~l~~~~~~  233 (488)
                      .+...-+.+|.......                 ......++|.++.+|..       +++.+-..|..||.-.+....+
T Consensus       282 qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd  361 (858)
T COG5215         282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD  361 (858)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence            89888878776431100                 01135688999999975       2456677777777766654432


Q ss_pred             hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316          234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       234 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                         .+++ .++..+-+-++++++.-|+.+..+++.+..+.......-+-...++.+...+.++ .-.++..++|+++.++
T Consensus       362 ---~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~ia  436 (858)
T COG5215         362 ---KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIA  436 (858)
T ss_pred             ---HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHH
Confidence               2333 2555556667888999999999999999987766555445557888888888877 8889999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhccCCCHHHH--HHHHHCCChHHHHhhcC-----CCC
Q 011316          314 AGNVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNEQI--KFLVSQGCIKPLCDLLN-----CPD  383 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~~~~~~L~~ll~-----~~~  383 (488)
                      .+-+..+.   ..|-++..++....   +.+.+..++.|...|++.+-.+...  ..+...-....+-.+++     ..+
T Consensus       437 d~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne  513 (858)
T COG5215         437 DHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE  513 (858)
T ss_pred             HHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence            65333222   12333333332222   2677888999999999875422110  11111111111111222     344


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 011316          384 PRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       384 ~~v~~~al~~L~~l~~~~~~  403 (488)
                      ...|..+..+|..++.+.+.
T Consensus       514 ~n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         514 SNLRVSLFSALGTLILICPD  533 (858)
T ss_pred             hhHHHHHHHHHHHHHhhcch
Confidence            56777888888888776553

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=2e-07  Score=91.43  Aligned_cols=301  Identities=19%  Similarity=0.175  Sum_probs=185.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.+++...++++.+|..|++.+..+--.       .+. .-....+.+.+++.+ +.+|..++.+..++-..+   .
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-------~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-------KIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-------HHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence            6678888888899999998888776664221       111 235678889999999 999999999998887643   4


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      +.....|+++.|..++.+.++.+..+|+.+|..+...++......+....+..++..+... ++   -.-+..|-.++..
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec-~E---W~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC-TE---WGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh-hh---hhHHHHHHHHHhc
Confidence            4566789999999999999999999999999999876653111111112233344444111 11   1223334444444


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .+... .....++..+...+.+.+..+...+...+..+...-..... ..-..+-+.++.++..+. +++..++.-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            44333 44456777888888888888888888888887765444222 222356677777777665 6666666666655


Q ss_pred             hcCCchhhHHHh--------------------------hCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316          270 VTGDDMQTQCII--------------------------NHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       270 ~~~~~~~~~~~~--------------------------~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      ....+.....-+                          +.++-+.+-++.   ..- +.+..+.+++++++++..-.+. 
T Consensus       307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-  384 (734)
T KOG1061|consen  307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-  384 (734)
T ss_pred             HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence            544332111100                          111111111111   222 5667788999999998742221 


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                           +++++.|++++.-+...+..++...+..+..
T Consensus       385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             -----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence                 3466666666665433444444555554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.9e-05  Score=77.72  Aligned_cols=350  Identities=12%  Similarity=0.107  Sum_probs=232.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.|.-++..+...|..+|..++..+..+++..+.+..+.+. ..-+|..++.+|.+.. +.+|..++..|..+..+++..
T Consensus       122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~~I  200 (970)
T KOG0946|consen  122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNSSI  200 (970)
T ss_pred             hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCchH
Confidence            67888888999999999999999999999987666666655 4678999999999999 899999999999999988888


Q ss_pred             hHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--cc--------Hh
Q 011316          109 TRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AK--------LS  174 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~--------~~  174 (488)
                      .+.++-.+++..|..+++.    +..-+.+-|+..|.||..++...+..+.+.+.++.+.++|.-.  .|        ..
T Consensus       201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr  280 (970)
T KOG0946|consen  201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR  280 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence            8888888899999999986    2346889999999999999888899999999999999887311  11        11


Q ss_pred             H--HHHHHHHHHHhhcCCCCC-------ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhC-
Q 011316          175 M--LRNATWTLSNFCRGKPQP-------LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAG-  242 (488)
Q Consensus       175 v--~~~a~~~L~~l~~~~~~~-------~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-  242 (488)
                      +  ...++.++..+.......       ..+...+++..|..++-++  ..+++..++.++.++.+++......+.+.. 
T Consensus       281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~  360 (970)
T KOG0946|consen  281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA  360 (970)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence            1  223444444444433111       1233367788888888776  467888899999998887765544444321 


Q ss_pred             ---------CHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhC-----------CC--hHHHHHHhcccchh
Q 011316          243 ---------VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QA--LPCLLDLLTQNYKK  299 (488)
Q Consensus       243 ---------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~--~~~L~~lL~~~~~~  299 (488)
                               ++-.++.+..+ ..+..|.++++++..+...+......++..           .+  -..++..+.+. ++
T Consensus       361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l~s~-d~  439 (970)
T KOG0946|consen  361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGLSST-DS  439 (970)
T ss_pred             CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHHhhccc-hH
Confidence                     12223333333 346788899999998888777655544310           01  11122222222 32


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHH--------cCChHHH---HHHHh---cCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316          300 SIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPL---VNLLL---NAEFEIKKEAAWAISNATSGGSNEQIKF  365 (488)
Q Consensus       300 ~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~l~~L---~~ll~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~  365 (488)
                      ---..++.++..+...+......+..        ..-...|   +..+.   ...+..+..-+..|+.+..++......+
T Consensus       440 ~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV~dF  519 (970)
T KOG0946|consen  440 LDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGCPDAVKDF  519 (970)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            22234444455554443433333332        1111122   11111   1233344446777778888777667777


Q ss_pred             HHHCCChHHHHhhcCC
Q 011316          366 LVSQGCIKPLCDLLNC  381 (488)
Q Consensus       366 l~~~~~~~~L~~ll~~  381 (488)
                      |.+++.++.|...+-+
T Consensus       520 Ls~~s~iq~Ltt~l~~  535 (970)
T KOG0946|consen  520 LSESSIIQYLTTQLMD  535 (970)
T ss_pred             HccccHHHHHHHHHhh
Confidence            7888889888876653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=2.5e-06  Score=82.10  Aligned_cols=362  Identities=16%  Similarity=0.121  Sum_probs=236.2

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      .++..++.-+..++ +.+|.....|+..+........    ...+.+.+.+++......-+..+.+.++.+..+..  ..
T Consensus        96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~  168 (569)
T KOG1242|consen   96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IE  168 (569)
T ss_pred             HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hh
Confidence            35677888888888 8999998888877665221111    11246777888888888889999999999987653  35


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                      .+.+.+.+..+...+.+..+..-++.+..+.-..+..-........-..+|.++.-+.+....++..+..+...+...-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            56677788888888844333333433444444444333333334445666777777777788898888887777654432


Q ss_pred             hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316          233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                      ...   ++ .+++.++.-+....+..+..++..++.++...+.+....+ ..+++.+.+.|.+. .+++|+.+..++..+
T Consensus       249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            221   11 2344444444444788899999999999987776655444 47999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316          313 TA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  390 (488)
                      ++  .+++ ++     .++|.|++.+.++.-.+ .++...|+.-......+- ..+.  -.++.|.+-+...+..+...+
T Consensus       323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~-psLa--lmvpiL~R~l~eRst~~kr~t  392 (569)
T KOG1242|consen  323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDA-PSLA--LMVPILKRGLAERSTSIKRKT  392 (569)
T ss_pred             HHhhccHH-HH-----HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecc-hhHH--HHHHHHHHHHhhccchhhhhH
Confidence            87  4454 22     26888999998875333 344555544432221100 1110  136666777777788888899


Q ss_pred             HHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC---CCCCCCCCCCC
Q 011316          391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED---EDEPLPPGDAT  467 (488)
Q Consensus       391 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~---~~~~~~~~~~~  467 (488)
                      ..++.|++..-+....         ....+.+.  ++.+.....+..|+++..+.+.+..+.+.-.   .++--|..+++
T Consensus       393 ~~IidNm~~LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~  461 (569)
T KOG1242|consen  393 AIIIDNMCKLVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSET  461 (569)
T ss_pred             HHHHHHHHHhhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence            9999999876532221         23333322  6778888888899999999998855554321   13335555544


Q ss_pred             C
Q 011316          468 Q  468 (488)
Q Consensus       468 ~  468 (488)
                      .
T Consensus       462 ~  462 (569)
T KOG1242|consen  462 L  462 (569)
T ss_pred             h
Confidence            3

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.89  E-value=3.5e-07  Score=87.12  Aligned_cols=302  Identities=13%  Similarity=0.122  Sum_probs=191.9

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh--hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (488)
                      ++...+++|++.. +.+|++|+...+.++.--..+  .+.+...|  ..|-..+....+++.-..+.+++.+.....--.
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            4667778899999 999999999888877511111  12222333  335556667888888887777777753221000


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      ..---.|+++.+...| ++....+..+....+..+|...+...-... ..+.--|+..|++.+.+++..|..+++.++..
T Consensus       682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            0011246788888898 778889999999999999998755332222 33444577888889999999999999998865


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      -..+       +++..|++-|+..+...|....-+++-.+..+.       ...++|.++.=-.++ +..++...+.+++
T Consensus       761 iGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam~  825 (975)
T COG5181         761 IGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAMC  825 (975)
T ss_pred             cCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHHH
Confidence            4332       556667776766554444433333333332211       124566666666777 8888888888888


Q ss_pred             HHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHHHHHCCChHHHHhhcCCCCHHHHH
Q 011316          311 NITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKFLVSQGCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       311 nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~~~~L~~ll~~~~~~v~~  388 (488)
                      .+... .....+++..  +.|.|-..+.+.|+.-|+.|...+.+++.++.--. ...++.  ++..|.--+-++.|.++.
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~  901 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQ  901 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHH
Confidence            77652 1233333433  68888889999999999999999999998763211 011110  122222222356677776


Q ss_pred             HHHHHHHHHH
Q 011316          389 VCLEGLENIL  398 (488)
Q Consensus       389 ~al~~L~~l~  398 (488)
                      ...+.+..+.
T Consensus       902 ~~~Eg~e~~~  911 (975)
T COG5181         902 SFDEGMESFA  911 (975)
T ss_pred             HHHHHHHHHH
Confidence            6666555553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.87  E-value=1.3e-07  Score=87.06  Aligned_cols=273  Identities=17%  Similarity=0.192  Sum_probs=193.0

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhh
Q 011316           66 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV  143 (488)
Q Consensus        66 ~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l  143 (488)
                      .+.+...|++..|+++++.++. ..+|.+|.+.|-.+..  .++++.++..| +..++.+-+. +.++..+..+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            4666778999999999999873 3469999999988875  68888888877 5555555543 6789999999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316          144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDAC  221 (488)
Q Consensus       144 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al  221 (488)
                      ..++.+....++..|++..++--. +..++.+.++++.+|.|++-..  .....+....+-+.|..+-.+.|.-.+.++|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999998888999999999888877 6678999999999999988765  4445556667777888887778888999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhH
Q 011316          222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  301 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v  301 (488)
                      .+.+.++.+.+ ....+.+.|.+..+-.++.+-+|..-..   --...+.+        -....++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcc-hhhh
Confidence            99999987754 3344666676666555555545432111   00011111        1124578899999877 5555


Q ss_pred             HHHHHHHHHHHhc-CCH-HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          302 KKEACWTISNITA-GNV-NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       302 ~~~a~~~L~nl~~-~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      +..+++-++-=+. .+. ...+.+.+.|.+..|-++..+++..-..-|-.+|.-+-
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            5555544443222 111 22234456788999999888776554455666665554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=1.6e-07  Score=88.44  Aligned_cols=321  Identities=17%  Similarity=0.112  Sum_probs=206.8

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      ...+.++..+..+.+++ ..+|..|+..+.|++.. ........-..+...+.++..+.+..++. ++..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            34578899999999999 79999999999999872 22222222334566666766666666654 44445444322110


Q ss_pred             hHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316          150 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  226 (488)
                      -+..   .--++.++.++.   ...++..|...+.-+..+-..++..-......+++.|..++.+++++++..+=.++.+
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            0010   012444444442   4457788887777777665554444444567889999999999999998776666665


Q ss_pred             hcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011316          227 LSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK  303 (488)
Q Consensus       227 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~  303 (488)
                      +..   +++..   +-....++.++..+.++++.++..|+.-+..+..-.+... ...-.|++..+++.+.+.+...++.
T Consensus       235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~  310 (675)
T KOG0212|consen  235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE  310 (675)
T ss_pred             HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence            542   22211   1122678889999999999999999888877776544332 2234577888888887772334555


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316          304 EACWTISNITA--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       304 ~a~~~L~nl~~--~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  380 (488)
                      .+...-..+..  +.+...+. ++ ..+++.+.+.+.++..+.|..++.-+..+-.....+....  .......|..-|.
T Consensus       311 ~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h--~~~if~tLL~tLs  387 (675)
T KOG0212|consen  311 YAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH--NDSIFLTLLKTLS  387 (675)
T ss_pred             HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh--ccHHHHHHHHhhc
Confidence            44433322222  11111111 22 2368888899999999999999988888876554333222  3357888888889


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhh
Q 011316          381 CPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       381 ~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      +++.+++..++..+.+++.....
T Consensus       388 d~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  388 DRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             CchhHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999876554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=3.4e-07  Score=92.12  Aligned_cols=277  Identities=17%  Similarity=0.217  Sum_probs=206.8

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  121 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  121 (488)
                      +....|+.|...-....+....+.-       -+|..++.|-+.   --|..|+..|+....-.+.....-..-|++|.+
T Consensus       448 ~FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV  517 (1387)
T KOG1517|consen  448 PFFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYV  517 (1387)
T ss_pred             chHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence            3446677777777776555433332       255566665553   346778999999988788888888889999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhcCCCCCChh-hh
Q 011316          122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFE-QT  198 (488)
Q Consensus       122 ~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~-~~  198 (488)
                      +++|+++..++|-..+.+.+.|...++.|+..+++.++-...++.+..+.  +++-+..++..|..++.+....+.. ..
T Consensus       518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~  597 (1387)
T KOG1517|consen  518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN  597 (1387)
T ss_pred             HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence            99999999999999999989988777889888888877777777774422  4567888999999999987444443 44


Q ss_pred             hchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----C
Q 011316          199 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----D  273 (488)
Q Consensus       199 ~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~  273 (488)
                      .+++..+...+.++ .+-++..++-+|+.|-++.+...=.-.+.+....|..+|.++-++||.+|+.+|+.+...    .
T Consensus       598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f  677 (1387)
T KOG1517|consen  598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF  677 (1387)
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence            67888888999885 688899999999999988765544455668889999999999999999999999999885    2


Q ss_pred             chhhHHH------------hhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011316          274 DMQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  329 (488)
Q Consensus       274 ~~~~~~~------------~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l  329 (488)
                      ++....+            ++..+.   ..++..++.. .+-+|.+..-++..++.+.........-+...
T Consensus       678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~  747 (1387)
T KOG1517|consen  678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL  747 (1387)
T ss_pred             chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence            3322222            122222   3566677777 89999999999999988756555444433333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=2.2e-06  Score=81.03  Aligned_cols=353  Identities=10%  Similarity=0.075  Sum_probs=221.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+++++.++...|..+|..|+..+.+++.....+...  .-+.+...+.++..+++ ..++. ++..+-.+..+-...+
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence            67899999999999999999999999987654322222  12345667777777776 55554 4555555444221111


Q ss_pred             H-HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH-HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          110 R-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       110 ~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      . .+-=.+++|.|-.-+...++..|...+.-|..+-..++ . +.+ .-...++.|+..| .+++.+++..+-.+++.+.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-L-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-H-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence            1 22222345555555555788888888877777744332 2 222 1123566777778 7778888887777777766


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-chHhHHHHH
Q 011316          188 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-SVLIPALRT  265 (488)
Q Consensus       188 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~  265 (488)
                      ..- .....+.....++.++..+.++++.++..|+.-+.....-.+...- ..-.|++..++.++.+..+ .++..+...
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            544 2222234567788899999999999999988888777765543322 3334778888888877655 344444332


Q ss_pred             ---HhHhhcCCchhhHHHhh-CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011316          266 ---VGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  341 (488)
Q Consensus       266 ---L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  341 (488)
                         +..++.. +...+. ++ ..+++.+.+.+.+. ..+.|..+..-+..+-...+... ......+++.|+.-+.+.+.
T Consensus       316 n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  316 NGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence               2233321 111111 22 24677888888888 88999988877777765434332 22345689999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      +|...++..+++++..........     .+..|.+++..+..-+...+--+++.++-
T Consensus       392 ~vvl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHHHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence            999999999999997653322211     23445555555444444444445555543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.80  E-value=2.8e-07  Score=85.03  Aligned_cols=267  Identities=14%  Similarity=0.099  Sum_probs=183.1

Q ss_pred             ccHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316           30 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      +++..|++.+++++.  .++.+|++.|.+++..+   +.+.+.+.| +..++.+-+....++.+...+.+|.++...+.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            788999999998774  56999999999998754   456666665 566666666555478899999999999998999


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      ....++..|++..++...+..++.+.++|+.+|+|++-+. ...+..+++..+-+.|+.+. .+.|.-.+.+||.+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999998543 44567777777777777776 666888899999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316          187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      +.+.+.......++.+..+-.++.+-|+.--          +....+..+ -...+-++.|+.+|++..-+.+..+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            9887655555556655555555555444321          111111111 11114567888888865544443333322


Q ss_pred             hHhhc-CCc-hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316          267 GNIVT-GDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       267 ~~l~~-~~~-~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      +.=+. .+. ...+.+-+-|.++.|-.+.+++ +.--.+.|..+|.-+.
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG  451 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG  451 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence            22111 111 1223344668888888888877 5544444444444443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=5.5e-06  Score=81.41  Aligned_cols=366  Identities=13%  Similarity=0.150  Sum_probs=229.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      ..|..+|.|.....++.|.+-+..+.... .+ .     ...+|..++...+.+ .+++.-.---|...++..++..-  
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL--  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL--  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee--
Confidence            46888899988888888888777776654 22 2     346888999999998 89998887778888875554321  


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC
Q 011316          113 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  192 (488)
Q Consensus       113 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~  192 (488)
                         =-|..+-+-|.++++.+|..|+++|+.+-.  +...      +++-.-++....+.++-||..|+.++-.+-.-.+.
T Consensus       108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e  176 (968)
T KOG1060|consen  108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE  176 (968)
T ss_pred             ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence               137889999999999999999999998731  1111      11111223333677889999999999998766533


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011316          193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       193 ~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  272 (488)
                      ..    ..++..+-.+|.+.++.|.-.|+.+...+|...-+.+.     +-...+..++.+-++.-+...+..|...|+.
T Consensus       177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence            32    25666677788888999999999999988865332222     4456677777765555565666666655542


Q ss_pred             C---chhhHH----------------------HhhCC---ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316          273 D---DMQTQC----------------------IINHQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       273 ~---~~~~~~----------------------~~~~~---~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      .   +.....                      ..+..   +++..-.+|.+. ++.+...++.+...++-.+..      
T Consensus       248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~~~------  320 (968)
T KOG1060|consen  248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKNQV------  320 (968)
T ss_pred             cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHHHH------
Confidence            1   100000                      00000   123334456666 778888888888877653211      


Q ss_pred             HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC----------------CHHHHHH--------HHHCC----ChHHHH
Q 011316          325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----------------SNEQIKF--------LVSQG----CIKPLC  376 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~~--------l~~~~----~~~~L~  376 (488)
                       ..++..|+++|.++ ..+|...+..+..++...                ++.+.+.        |....    +++-|.
T Consensus       321 -~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q  398 (968)
T KOG1060|consen  321 -TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ  398 (968)
T ss_pred             -HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence             23566777777664 445555555555554322                1111111        11111    233444


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          377 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       377 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++++.+..+...+..+|+..........                 .-.+.-|..++.+.+..|...|...|+++...
T Consensus       399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv~-----------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  399 TYIKSSDRSFAAAAVKAIGRCASRIGSVT-----------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHhhCchh-----------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            45566666777777788877765433221                 22356677777777777877777777776653

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=3.7e-06  Score=85.16  Aligned_cols=385  Identities=14%  Similarity=0.136  Sum_probs=243.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +..+..-+.-+.+++.++..++.-+.++++..    .......++++.+.++..+.. ..+|+.|...+.++.......-
T Consensus       237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~  311 (759)
T KOG0211|consen  237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD  311 (759)
T ss_pred             HHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch
Confidence            44444455556678999999999999887654    235667889999999999988 7999999998888876221111


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC--------------------Cchh-------------------
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--------------------SPKC-------------------  150 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~--------------------~~~~-------------------  150 (488)
                       . ....+.+.++....+++..++.........+...                    .+.-                   
T Consensus       312 -d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~  389 (759)
T KOG0211|consen  312 -D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS  389 (759)
T ss_pred             -h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence             1 1223467777777777777766655544444311                    0000                   


Q ss_pred             -HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316          151 -RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       151 -~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                       ...+.....++.+-.+. .+.+..++...+.....+..-.+  .........|.....+++..+.++....+.+..+-.
T Consensus       390 ~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~  466 (759)
T KOG0211|consen  390 CYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE  466 (759)
T ss_pred             cccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence             00001111112121222 33344444433333333222111  222335667777888888889999888877765554


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      ..+..-........++.+..+-....+.++.+.++.+..++....   ..+++...-+.+...+.+. ...++..|+..+
T Consensus       467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l  542 (759)
T KOG0211|consen  467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNL  542 (759)
T ss_pred             ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHh
Confidence            433322334445677778777777778899999999888886433   3344445556666667666 678999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011316          310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  389 (488)
                      ..++.......   .....++.++....+++...|...+.++..++...+.+.    ....+++.+.++..++.+.||..
T Consensus       543 ~~l~~~~G~~w---~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~n  615 (759)
T KOG0211|consen  543 PALVETFGSEW---ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRIN  615 (759)
T ss_pred             HHHHHHhCcch---hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhh
Confidence            98887322111   112367777777777778888888888887776544333    33357999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      ++..|..+...-...               ..+....+.++.+..+++.+++..|......
T Consensus       616 vak~L~~i~~~L~~~---------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  616 VAKHLPKILKLLDES---------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS  661 (759)
T ss_pred             HHHHHHHHHhhcchH---------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            999999887764432               1223335666777777777777776665543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=5.6e-06  Score=72.70  Aligned_cols=270  Identities=14%  Similarity=0.146  Sum_probs=179.4

Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011316          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  240 (488)
Q Consensus       161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  240 (488)
                      ..++.++ .+.++.++..|..-+..++..............++.+.+++...++  .+.+..++.|++....- .+.++.
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l-~~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL-RKKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH-HHHHHH
Confidence            4567777 7889999999999998888772222222335677888889887766  77889999999987643 355665


Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh------hCCChHHHHHHhcccchhhH-HHHHHHHHHHHh
Q 011316          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKKSI-KKEACWTISNIT  313 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~  313 (488)
                      . ++..++..+.++........+..++|++...........      +.+.+.......+++.+... -...+.+++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            5 888889999888888999999999999986554433222      24556666666665533222 235566778887


Q ss_pred             cCCHHHHHHHHHcCChH--HHHHHHhcCChhHH-HHHHHHHHHhccCCCHHHHHHHHH----------------------
Q 011316          314 AGNVNQIQAIIEAGIIG--PLVNLLLNAEFEIK-KEAAWAISNATSGGSNEQIKFLVS----------------------  368 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~--~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~----------------------  368 (488)
                      .. ...+..+.+...++  .+..+ .+.+..+| ...+..|.|.+...  ..-..+..                      
T Consensus       161 ~~-~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  161 QF-EAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             hh-hhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence            64 45556665544322  23332 23455555 44677777866533  11122211                      


Q ss_pred             --CCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-hcCCCHHH
Q 011316          369 --QGCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEI  440 (488)
Q Consensus       369 --~~~~~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-~~~~~~~v  440 (488)
                        .+...-| +++.     .+++.++...+++|..++....             .++.++..|+...+..+ ...+++++
T Consensus       237 dm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~  302 (353)
T KOG2973|consen  237 DMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDI  302 (353)
T ss_pred             HHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHH
Confidence              1122222 4443     4578899999999988875544             38889999999999999 45578999


Q ss_pred             HHHHHHHHHHhcC
Q 011316          441 YEKAVKILETYWV  453 (488)
Q Consensus       441 ~~~a~~~l~~~~~  453 (488)
                      ..+..++.+-+..
T Consensus       303 ~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  303 REACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHh
Confidence            9888888877766

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.2e-05  Score=69.64  Aligned_cols=344  Identities=14%  Similarity=0.147  Sum_probs=229.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc---HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      +.+|.|-..|..++..++..++..+..++.+.+...   +..+++.++++.++..+-.++ .++...|...+..++. .+
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fp  159 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FP  159 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cH
Confidence            345566666778999999999999999887653222   344568899999999999888 8999999999999998 78


Q ss_pred             hhhHHHHhCCCHHHHH--HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011316          107 ENTRVVIDHGAVPIFV--RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~--~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~  184 (488)
                      .....+++......+-  .+-...+.-.|...+..+..+.+-++.....+...|.+..+..-+....|.-++.+++....
T Consensus       160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt  239 (524)
T KOG4413|consen  160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT  239 (524)
T ss_pred             HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence            8888888777665543  23334566777788888999988888888888888999888888855577778889999989


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCc--h-hHHHHHHh--CCHHHHHHhcCCCCcc
Q 011316          185 NFCRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVCPRLVELLRHPSPS  257 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~--~-~~~~~~~~--~~l~~L~~lL~~~~~~  257 (488)
                      .++.......+....++++.+..++.-  .++--.-.++...+.+.....  + .-+.+++.  -.++..+......+++
T Consensus       240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpd  319 (524)
T KOG4413|consen  240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPD  319 (524)
T ss_pred             HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCch
Confidence            998877777777788999988888863  344333334444443332110  0 01122221  2344556667778999


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCC--hHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHHHH---------H-H
Q 011316          258 VLIPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQI---------Q-A  322 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~---------~-~  322 (488)
                      ....|+.+++.+-+. .+..+.+.+.|-  ...++.-.-+.....-+..+..+|.+++.   -.++++         . .
T Consensus       320 aieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl  398 (524)
T KOG4413|consen  320 AIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL  398 (524)
T ss_pred             HHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence            999999999998773 344455554443  23333322222123344566777777765   122211         1 1


Q ss_pred             HHH-------cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011316          323 IIE-------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       323 l~~-------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~  377 (488)
                      +++       ..-......+++.+.++++..++.++..++... =.....+...+.++...+
T Consensus       399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP-WalkeifakeefieiVtD  459 (524)
T KOG4413|consen  399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP-WALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc-HHHHHHhcCccceeeecc
Confidence            111       133556677788889999999999999997532 233344444455555544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=8.8e-06  Score=80.04  Aligned_cols=256  Identities=18%  Similarity=0.185  Sum_probs=142.6

Q ss_pred             hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011316           81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  160 (488)
Q Consensus        81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  160 (488)
                      ...+.. +.+|..|+.++-.+-.-+++...++     ++.+-.+|.+.++-+.-.|+.+.-.+|-+.-   +.+  .+-.
T Consensus       151 ~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkny  219 (968)
T KOG1060|consen  151 AVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNY  219 (968)
T ss_pred             HhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHH
Confidence            334445 6666666666666666555555433     3455556666677777777776666653321   111  1233


Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhchHHHHHHhhcc
Q 011316          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF----------------------------EQTRPALPALERLIHS  211 (488)
Q Consensus       161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~~~~L~~ll~~  211 (488)
                      ..+.+++ .+-++==+...+..|...|+.. +....                            .-..-+++..-.++.+
T Consensus       220 rklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S  298 (968)
T KOG1060|consen  220 RKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS  298 (968)
T ss_pred             HHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence            4444444 2222222333444444444332 11100                            0112234455567778


Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh----------
Q 011316          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII----------  281 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------  281 (488)
                      .++.+...++.+...++....  ..     .++..|+.+|.++ ..++...+..+..++...+......+          
T Consensus       299 ~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp  370 (968)
T KOG1060|consen  299 RNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP  370 (968)
T ss_pred             CCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH
Confidence            899999999999999986432  22     4567788877664 45777777777777754332211111          


Q ss_pred             ---------------hC-C---ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011316          282 ---------------NH-Q---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       282 ---------------~~-~---~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  342 (488)
                                     .. +   +++-+...+++. +..+...|+.+|+.++......     ...++..|+.++.+.+..
T Consensus       371 ~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~  444 (968)
T KOG1060|consen  371 TQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDEL  444 (968)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccch
Confidence                           11 1   222233333444 4456667777777776532221     223577788888888888


Q ss_pred             HHHHHHHHHHHhccCCCHHH
Q 011316          343 IKKEAAWAISNATSGGSNEQ  362 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~  362 (488)
                      |..++...+..|......+.
T Consensus       445 Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  445 VVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             hHHHHHHHHHHHHhhChHHH
Confidence            88888888888887654444

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.74  E-value=2.9e-06  Score=84.91  Aligned_cols=315  Identities=16%  Similarity=0.184  Sum_probs=189.9

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           32 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +...++.|.+  .|.+++..|+.++..+...-. +..... -...++.+++-|+.   +-.|..|+++++.++...-...
T Consensus       570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~  644 (1233)
T KOG1824|consen  570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDID  644 (1233)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceee
Confidence            3345566654  568999999999999877542 221111 12456667666665   4568889999999998433332


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ..-.-..+++.+..+++.....++...+.++-.+...... ......+ -++..+..++ ..++-.+...+..+|..+..
T Consensus       645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHh
Confidence            2222335678888888877777777777777666533211 1111111 1233444445 66777888899999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-----chHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIP  261 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~  261 (488)
                      ..+.........+++.++.+++++-  ......++.....+........      + ...++.++..+-+     .+...
T Consensus       723 ~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kq  795 (1233)
T KOG1824|consen  723 IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQ  795 (1233)
T ss_pred             cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHH
Confidence            8766666677889999999998863  2222333333323322221110      2 4445566655321     12333


Q ss_pred             H----HHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316          262 A----LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       262 a----~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      |    ..|.+.++...++....+    ....+.++.+...+..+|..|...++.+..+.+..    -..++...+++.++
T Consensus       796 a~~siA~cvA~Lt~~~~~~s~s~----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~  867 (1233)
T KOG1824|consen  796 AYYSIAKCVAALTCACPQKSKSL----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFN  867 (1233)
T ss_pred             HHHHHHHHHHHHHHhccccchhH----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcC
Confidence            3    444444444333222211    22334444444446788889999999998742211    11234557788899


Q ss_pred             cCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316          338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      +++.+++..|..||++++.+.-+.+.+.+.+
T Consensus       868 sp~edvksAAs~ALGsl~vgnl~~yLpfil~  898 (1233)
T KOG1824|consen  868 SPSEDVKSAASYALGSLAVGNLPKYLPFILE  898 (1233)
T ss_pred             CChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence            9999999999999999998766666655543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=5.1e-07  Score=90.94  Aligned_cols=247  Identities=16%  Similarity=0.203  Sum_probs=190.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+|..++.|-|.  --|+.|+..|..++.-. ...+..-..-|++|..+++|+++- .++|..-+.+-+.|..-++.+.
T Consensus       472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            4566666666552  34677999999988765 566777778899999999999999 8999999999999888789999


Q ss_pred             HHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          110 RVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      ..+++.++-..+++.|..   -+++-|..|+.+|+.++.+-+-.++.+.+.+.+...+..++.+..+-++.-++-+|+.|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            999988888888888876   34689999999999999887777888999899998899995545677888999999999


Q ss_pred             hcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC----chhHHHH------------HHhCCH---HH
Q 011316          187 CRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT----NDKIQAV------------IEAGVC---PR  246 (488)
Q Consensus       187 ~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~----~~~~~~~------------~~~~~l---~~  246 (488)
                      -.+.+.. ..-...++...|..++.++-++|+..|+.+|+.+..+.    ++....+            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            8887443 33455788999999999999999999999999988753    2222211            121112   24


Q ss_pred             HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHH
Q 011316          247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI  280 (488)
Q Consensus       247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  280 (488)
                      ++..++...+-++....-++..+..+.......+
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v  741 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV  741 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence            5566677777788887778888777655444433

>PF05536 Neurochondrin: Neurochondrin

Probab=98.72  E-value=5.1e-05  Score=75.60  Aligned_cols=382  Identities=15%  Similarity=0.109  Sum_probs=232.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNI  101 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~------~~~v~~~a~~~L~~l  101 (488)
                      ..+...++.|++.+.+-+..++-.+.+++...+...  .+.+.+.=+.+.+-++|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            457778899999888889999999999887653222  234667777888889998732      156778888899999


Q ss_pred             cCCCchhhHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316          102 ASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       102 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~  180 (488)
                      +. .|+....---.+-||.|++.+.+.+. .+...|+.+|..++.. +..++.+.+.|.++.|.+.+.+  .+.....++
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            98 55554222122569999999988666 9999999999999954 5568889999999999999844  556678888


Q ss_pred             HHHHHhhcCCCC----CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-HHHHHH----hCCHHHHHHhc
Q 011316          181 WTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVCPRLVELL  251 (488)
Q Consensus       181 ~~L~~l~~~~~~----~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~----~~~l~~L~~lL  251 (488)
                      .++.+++.....    ........+++.+...+.......+-.++..|..+....+.. ......    ..+...+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            888888765421    122233456677777777666777778888888887655311 111111    13334455555


Q ss_pred             CC-CCcchHhHHHHHHhHhhcCCchhhHHHh-hC-----CChHHHHHH---------------hcccchhh---------
Q 011316          252 RH-PSPSVLIPALRTVGNIVTGDDMQTQCII-NH-----QALPCLLDL---------------LTQNYKKS---------  300 (488)
Q Consensus       252 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~-----~~~~~L~~l---------------L~~~~~~~---------  300 (488)
                      .+ ..+.-|..++...+.+.....  .+.++ +.     .++-.++++               .+.+....         
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf  318 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF  318 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence            55 356677777777776665311  11111 00     122222221               11111111         


Q ss_pred             -HHHHHHHHHHHHhcC-----CHHHHHHHHH--cCChHHHHHHHhcC------ChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011316          301 -IKKEACWTISNITAG-----NVNQIQAIIE--AGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFL  366 (488)
Q Consensus       301 -v~~~a~~~L~nl~~~-----~~~~~~~l~~--~~~l~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l  366 (488)
                       +-...+..+.+-...     +++....+..  .+.+...+.+|++.      ++.....+.++|+......+...++.+
T Consensus       319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v  398 (543)
T PF05536_consen  319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV  398 (543)
T ss_pred             HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence             111111222221110     2333333332  34566666676653      333667788888888776555545554


Q ss_pred             HHCCChHHHHhhcCCCCHH----------HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011316          367 VSQGCIKPLCDLLNCPDPR----------IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  432 (488)
Q Consensus       367 ~~~~~~~~L~~ll~~~~~~----------v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l  432 (488)
                      .  ++++.++++.+.....          .+.-.+=+|..+..-..             .++.+...|+.+.+.+.
T Consensus       399 ~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~-------------gr~~l~~~~g~~~l~~~  459 (543)
T PF05536_consen  399 Y--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE-------------GRKILLSNGGWKLLCDD  459 (543)
T ss_pred             H--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH-------------HHHHHHhCCcHHHHHHH
Confidence            3  6889999888754332          33344444444432211             47777778886666653

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=2.3e-05  Score=76.41  Aligned_cols=255  Identities=15%  Similarity=0.173  Sum_probs=180.0

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      .-+-++.+|.++. |.+|..|+..+..+....|+...     ..+|.|..-|.++++.++..|..+++.|++.+|..  .
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence            4456778899998 89999999999999986666544     34799999999999999999999999999888753  1


Q ss_pred             HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHH--hccC
Q 011316          154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSY--LSDG  230 (488)
Q Consensus       154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~--l~~~  230 (488)
                      +   ..-|.+.++|-.+.+.=+....+..+.+|+.-.|    .....+++.+..++++. -..+...+..++..  ++.+
T Consensus       217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence            1   2355666777555555566667777777765432    23356788888998876 35666666666543  3333


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      .++....+ . -+++.|--++.+.++.++..++-+++.+....+...+.     .-+.+++.|.+. ++.+|..|+..+.
T Consensus       290 ~~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            32222211 1 34677777888999999999999999999876655442     356789999999 9999999999998


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC
Q 011316          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  358 (488)
                      -+...  +++..     ++..|+..+... ....|.+.+.-+..+++..
T Consensus       362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            88753  33333     344444444433 3466777777666666544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.65  E-value=1.3e-05  Score=75.67  Aligned_cols=335  Identities=16%  Similarity=0.062  Sum_probs=208.1

Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHH
Q 011316           98 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSML  176 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~v~  176 (488)
                      |..+....++.+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+.+.+.-..++..+.++ .+..-+
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence            4444444555555554444556666555555599999999999999877654 45555656555555666443 344568


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011316          177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       177 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      .+|+..+..+..-.. .....-.+++..++.+..+.++..+..++.+++.++-.++   +.+...|++..+.+.+.++..
T Consensus        86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH
Confidence            899999998887642 2223457889999999999999999999999999998776   457888999999999987655


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc------chh--hHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 011316          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIE-AG  327 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~  327 (488)
                      ++....+.++..+.. .+..++.+...--++.++.-+.+.      .+.  +.-..+..++..+.+.=+...-...+ ..
T Consensus       162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~  240 (371)
T PF14664_consen  162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR  240 (371)
T ss_pred             hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence            678888888888877 444555444433344454444322      022  23344555555555432221111111 14


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH------CCCh---HHHHhhcCCCC---HHHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS------QGCI---KPLCDLLNCPD---PRIVTVCLEGLE  395 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~~---~~L~~ll~~~~---~~v~~~al~~L~  395 (488)
                      .+..|+..+..+++++|+..+..+..+..-..+........      .+-.   ..+..-.....   +.....-...+.
T Consensus       241 ~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~  320 (371)
T PF14664_consen  241 GLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVN  320 (371)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHH
Confidence            68889999999999999999999999987554332222111      0111   00000000000   000000001111


Q ss_pred             HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q 011316          396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWV  453 (488)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~  453 (488)
                      +...               -....|.+.|.++.|.++..+. ++.+..+|.-++.+++.
T Consensus       321 ~y~a---------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  321 HYLA---------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHH---------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            1110               0355678899999999997665 88999999999987653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.2e-05  Score=77.55  Aligned_cols=346  Identities=17%  Similarity=0.188  Sum_probs=220.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+..+++.+..+.+.+|.....+|..+.........     ..+.+.+.+++...+ ..-+..+.+.+..+..+.  .-
T Consensus        96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i  167 (569)
T KOG1242|consen   96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GI  167 (569)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HH
Confidence            3456677777888889998888888876554322222     235677888888777 788888999998888733  33


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHH-HHHHHHhhhhCC-CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVRE-QAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~-~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..+.+.+++..+.....+.....++ .++.+....+.. .+.....+..  .++.++... .+....++..+..+...+.
T Consensus       168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~  244 (569)
T KOG1242|consen  168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIM  244 (569)
T ss_pred             hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHH
Confidence            4455678889999988875444433 233322222211 1111112221  344444444 4556778887777776665


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..-+.   ....-++|.++.-+....+.....++..++.++...+.+.. ..-..++|.+.+.|.+..++++..+..++.
T Consensus       245 ~~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~  320 (569)
T KOG1242|consen  245 RCLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLL  320 (569)
T ss_pred             HhcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence            44311   12233445555555445788889999999999988776655 444589999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-C--CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-G--NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      .++.--+.. .  +. ..++.+++.+.++ ...+ .++...|+.=.. +  .+...     .-++|.|.+-+...+...+
T Consensus       321 ~~~svidN~-d--I~-~~ip~Lld~l~dp-~~~~-~e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~k  389 (569)
T KOG1242|consen  321 KFGSVIDNP-D--IQ-KIIPTLLDALADP-SCYT-PECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIK  389 (569)
T ss_pred             HHHHhhccH-H--HH-HHHHHHHHHhcCc-ccch-HHHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhh
Confidence            888632211 0  11 3567788888777 3222 223333331111 0  11111     1146666677777788899


Q ss_pred             HHHHHHHHHhccCC-CHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316          345 KEAAWAISNATSGG-SNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       345 ~~a~~aL~~l~~~~-~~~-~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      +.++..+.|++.-- ++. ..+++-+  +++.|-..+.+..|++|..+..+|..+.+....
T Consensus       390 r~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  390 RKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             hhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            99999999998644 333 3344333  677777777888999999999999888776443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=2.8e-07  Score=86.36  Aligned_cols=310  Identities=13%  Similarity=0.104  Sum_probs=195.7

Q ss_pred             HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc
Q 011316          133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS  211 (488)
Q Consensus       133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~  211 (488)
                      ...++.+|..+++.....|.-+.+..+.+.|++.| ..++..+...+...++++.-.- +-.......+++..++.++.+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            34455566666665556677778888899999999 5555555666777777766544 444555668999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch---hhHHHhhC----
Q 011316          212 NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----  283 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~----  283 (488)
                      .|..++....|.++.+..+..+..+ ..+..-++..++...+++...++...+.++.|+.+.+..   .....++.    
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~  564 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR  564 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence            9999999999999999876553322 244446789999999999999999999999999984332   12222221    


Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC-----------ChhHHHHHHHHH
Q 011316          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA-----------EFEIKKEAAWAI  351 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~-----------~~~v~~~a~~aL  351 (488)
                      -+.+.+.+.+... ++-.-...++.|.+++..+......+.+ ..++..+..++...           ..++-..-....
T Consensus       565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~  643 (743)
T COG5369         565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI  643 (743)
T ss_pred             HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence            2456677777777 6666667789999888865554444443 34555555544321           111212222223


Q ss_pred             HHhccCCCHHHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316          352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       352 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      .++..+.+ ...+.....   +.+-..=+   .++.++-....|.+.++....+..+..   +..-...+.+.+.|.-+-
T Consensus       644 v~l~e~~d-~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~  716 (743)
T COG5369         644 VNLSENSD-KFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREW  716 (743)
T ss_pred             eccccccc-ccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHH
Confidence            33332211 110000000   11111111   234567677777777765433322211   111124677888999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHh
Q 011316          429 IENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       429 l~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      ++.++.++++.|++++..++.++
T Consensus       717 l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         717 LVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHhccCcHHHHHHHHHHHHhh
Confidence            99999999999999999988764

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=2e-07  Score=87.32  Aligned_cols=299  Identities=14%  Similarity=0.133  Sum_probs=202.9

Q ss_pred             HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc
Q 011316           92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus        92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~  171 (488)
                      .+++.+|..++.+-.-.|.-+.+..+.+.|+++|+.++..+...+...++|..-.-...+..+++.+++..++.++ .+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hcc
Confidence            4455567777775566778888899999999999998888888888889998866666888999999999999999 677


Q ss_pred             cHhHHHHHHHHHHHhhcCCC-CCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch---hHHHHHHh----C
Q 011316          172 KLSMLRNATWTLSNFCRGKP-QPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---KIQAVIEA----G  242 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~-~~~~~-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----~  242 (488)
                      |..++.+..|.+.++..+.. ..+.. ...-.+..++.+..++...++..++..+.|+..+...   .....++.    -
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            88999999999999988763 33333 3356788899999999999999999999999864332   11212221    1


Q ss_pred             CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHhccc---------c-hhhHHHHHHHHHHH
Q 011316          243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQN---------Y-KKSIKKEACWTISN  311 (488)
Q Consensus       243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~---------~-~~~v~~~a~~~L~n  311 (488)
                      +...+.+.+...+|-.....+.+|.+++..++.....+++ ...+..+..+|...         + ...+-..-..+..+
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            4456666677778877778899999999877766655553 34455555554221         0 11111112222233


Q ss_pred             HhcCCHHHHHHHHHcCCh--HHHHHHHhc----CChhHHHHHHHHHHHhccC--------CCHHHHHHHHHCCChHHHHh
Q 011316          312 ITAGNVNQIQAIIEAGII--GPLVNLLLN----AEFEIKKEAAWAISNATSG--------GSNEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l--~~L~~ll~~----~~~~v~~~a~~aL~~l~~~--------~~~~~~~~l~~~~~~~~L~~  377 (488)
                      +...+.+..     .+..  |.+= .++.    ++.+.-.+..|...|+.-.        .+.+.++.|.+.|.-+.+..
T Consensus       646 l~e~~d~f~-----r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k  719 (743)
T COG5369         646 LSENSDKFK-----RLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK  719 (743)
T ss_pred             ccccccccc-----cceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence            322111110     1111  1111 1122    1345666777777775421        13467788899999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHH
Q 011316          378 LLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       378 ll~~~~~~v~~~al~~L~~l  397 (488)
                      +..++.+.+++.+-.+|.++
T Consensus       720 ~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         720 IQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HhccCcHHHHHHHHHHHHhh
Confidence            99999999999998888765

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=2.2e-05  Score=76.93  Aligned_cols=318  Identities=15%  Similarity=0.073  Sum_probs=164.2

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011316           80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      +=|++++ +-+|-..++.|+.+=.  ++..+     ..+|.+...|++.++-+|++|..++..+-.....   .+  .++
T Consensus       106 kDLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDa  172 (948)
T KOG1058|consen  106 KDLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDA  172 (948)
T ss_pred             hhccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CCh
Confidence            3356666 6777777777766643  33333     3478888899999999999999999888644211   11  123


Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHH
Q 011316          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQ  236 (488)
Q Consensus       160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~  236 (488)
                      -+.+-..|....|+.-+++|...|...-..          .++..+...+.   +-++.++...+..+...+...+....
T Consensus       173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~  242 (948)
T KOG1058|consen  173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA  242 (948)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh
Confidence            334445555667777777777666543221          12222222221   12344444445555554443332222


Q ss_pred             HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-----------------hhhHHHh---------------hCC
Q 011316          237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-----------------MQTQCII---------------NHQ  284 (488)
Q Consensus       237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------~~~~~~~---------------~~~  284 (488)
                           ..+..+..+|.+.++.++..|..+|..++....                 .....++               =.+
T Consensus       243 -----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~  317 (948)
T KOG1058|consen  243 -----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQG  317 (948)
T ss_pred             -----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHH
Confidence                 334445555554444444444444444433111                 0000000               012


Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHH-hcC------ChhHHHHHHHHHHHhcc
Q 011316          285 ALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLL-LNA------EFEIKKEAAWAISNATS  356 (488)
Q Consensus       285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll-~~~------~~~v~~~a~~aL~~l~~  356 (488)
                      .+.-++++|+++ +-++|+.+......++.+ +-+   .     ++..|-.=+ +..      +.+.|+.-..++...+.
T Consensus       318 l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNve---d-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav  388 (948)
T KOG1058|consen  318 LIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVE---D-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV  388 (948)
T ss_pred             HHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHH---H-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence            333344455555 556666666555555542 111   1     122221111 111      12345555666666654


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011316          357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD  436 (488)
Q Consensus       357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~  436 (488)
                      .- ++...     .+++.|++.+.+.++.....++..++..+...+...            ..+.    -..++.+-.-.
T Consensus       389 ~F-p~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii----~~l~~~~~~ir  446 (948)
T KOG1058|consen  389 KF-PEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASII----EKLLETFPQIR  446 (948)
T ss_pred             cC-hHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHH----HHHHHhhhhhc
Confidence            43 23322     368888888888888777777777777776655432            2121    11223333334


Q ss_pred             CHHHHHHHHHHHHHhcCCCC
Q 011316          437 NTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~~~~~~  456 (488)
                      +.++..-|.|++..|.+.++
T Consensus       447 S~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  447 SSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             ccccchhHHHHHHHHHhhhH
Confidence            56777788888888777665

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.7e-05  Score=70.28  Aligned_cols=340  Identities=14%  Similarity=0.144  Sum_probs=213.3

Q ss_pred             hhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH--HHhhc
Q 011316            6 IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLS   83 (488)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L--~~lL~   83 (488)
                      +.|.+--+-++.+.++..  ....+.++.++.++..+|.++...|...+..++-.  +.....+.++.....+  .++-.
T Consensus       106 igcilEdcDtnaVseill--vvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaa  181 (524)
T KOG4413|consen  106 IGCILEDCDTNAVSEILL--VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAA  181 (524)
T ss_pred             hhHHHhcCchhhHHHHHH--HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHh
Confidence            445444444444433322  11237889999999999999999999999997654  3444555555444433  23333


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHH
Q 011316           84 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP  162 (488)
Q Consensus        84 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  162 (488)
                      ..+ .-.|...+..+..+.+-+++......+.|.+..|..-++. .+.-++.+++.....++...- .++.+.+.|.+..
T Consensus       182 kcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdl  259 (524)
T KOG4413|consen  182 KCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDL  259 (524)
T ss_pred             hhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHH
Confidence            334 4678888888999999899999999999999999988876 788889999999999985443 4667777788888


Q ss_pred             HHHHhc-ccccHhHHHHHHHHHHHhhcCCCCC------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316          163 LLAQFN-EHAKLSMLRNATWTLSNFCRGKPQP------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       163 l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      +...+. .++++--.-.++.....+.......      .......++....+++..+|+..+..+..+++.+.++.... 
T Consensus       260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa-  338 (524)
T KOG4413|consen  260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA-  338 (524)
T ss_pred             HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh-
Confidence            877773 2334443444555555554432111      11111334555567778899999999999999998765433 


Q ss_pred             HHHHHhCC--HHHH-HHhcCCCCcchHhHHHHHHhHhhcCC---chh----------hHHHh-------hCCChHHHHHH
Q 011316          236 QAVIEAGV--CPRL-VELLRHPSPSVLIPALRTVGNIVTGD---DMQ----------TQCII-------NHQALPCLLDL  292 (488)
Q Consensus       236 ~~~~~~~~--l~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~----------~~~~~-------~~~~~~~L~~l  292 (488)
                      +.+.+.|-  ...+ ......+...-+..++.+|.+++...   +++          +..++       +..-...+..+
T Consensus       339 dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgi  418 (524)
T KOG4413|consen  339 DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGI  418 (524)
T ss_pred             HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence            54555443  2222 23333333445667778888777531   111          11111       12345667778


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHHH
Q 011316          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISN  353 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~  353 (488)
                      ++.+ .++++..+..++..++...=....-+.+.+++..+.+.-...   ..+-+.+++.++.+
T Consensus       419 lqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  419 LQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             HcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence            8888 899999999999999876333333333456666555433222   22344555555543

>TIGR02270 conserved hypothetical protein

Probab=98.59  E-value=2.1e-05  Score=75.09  Aligned_cols=242  Identities=17%  Similarity=0.046  Sum_probs=162.9

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..++.++..|. .+++.+...++..+..   .+ ..        ..+..|++.|.+.+ +.++..++.+|+.+-.     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-----  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG-----  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----
Confidence            34666777774 4556666655554432   11 11        13778888888887 7888888888876543     


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                            ....+.|+.++.+.++.++..++.+++..-.            ...+.+...+ ++.++.++..++.+|..+..
T Consensus       116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPR  176 (410)
T ss_pred             ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence                  2446788888888888888888877766321            1345677777 68888899999999988765


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .          ..++.|...+.+.++.|+..++.++..+..  +         ..+..+..............+..++..
T Consensus       177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal  235 (410)
T TIGR02270       177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV  235 (410)
T ss_pred             c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence            4          356667778888899999999888876633  1         122334443333333333333333333


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      .  ..+         ..++.|..+++++ .  ++..++++++.+-..           ..++.|+..+.+.  .++..|.
T Consensus       236 ~--~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~  288 (410)
T TIGR02270       236 A--GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAG  288 (410)
T ss_pred             C--Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHH
Confidence            2  111         4677888888876 3  899999999977432           3688888887764  3999999


Q ss_pred             HHHHHhcc
Q 011316          349 WAISNATS  356 (488)
Q Consensus       349 ~aL~~l~~  356 (488)
                      .++..++-
T Consensus       289 eA~~~ItG  296 (410)
T TIGR02270       289 EAFSLITG  296 (410)
T ss_pred             HHHHHhhC
Confidence            99999985

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.9e-05  Score=69.50  Aligned_cols=272  Identities=14%  Similarity=0.191  Sum_probs=175.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +..++.++.+.+|.++..|...+..+...    ..+.+.  +.-.++.+.+++.... +  ...|+.++.|++. .++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            44689999999999999999999887654    122222  3346788889998877 5  6778999999999 78888


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccc-c-HhHHHHHHHH
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHA-K-LSMLRNATWT  182 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~-~-~~v~~~a~~~  182 (488)
                      +.+++. ++..+...+.++...+.+..+.+|+|++++...+.......     ..+..++....+.+ + ..-..+.+..
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            888876 77777777877777888889999999998887665544332     23444444432222 2 1334566777


Q ss_pred             HHHhhcCCCCCChhhhhch--HHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHh--CCHHHHH---------
Q 011316          183 LSNFCRGKPQPLFEQTRPA--LPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEA--GVCPRLV---------  248 (488)
Q Consensus       183 L~~l~~~~~~~~~~~~~~~--~~~L~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~---------  248 (488)
                      ++++++.............  .+.+..+- +.+..+ +...+.+|.|.|-..... ..+++.  .+++.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhccc-ccchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence            8888876644433333322  22233332 344444 345667777766543322 112211  1222221         


Q ss_pred             ------------HhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          249 ------------ELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       249 ------------~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                                  +.|.     .+++.+|..-+.+|..+|. ....++.+...|+.+.+-.+=+...+++++..+-.....
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                        3332     2567899999999999988 455677777778877777766665577777766666666


Q ss_pred             HhcC
Q 011316          312 ITAG  315 (488)
Q Consensus       312 l~~~  315 (488)
                      +...
T Consensus       313 Lv~~  316 (353)
T KOG2973|consen  313 LVRL  316 (353)
T ss_pred             HHhc
Confidence            6553

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=8.1e-05  Score=75.68  Aligned_cols=313  Identities=12%  Similarity=0.174  Sum_probs=203.4

Q ss_pred             ChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011316           19 DPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        19 ~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      .++|.+.....+.++-+...+.+ .++.++..|+..+..+.+.  .+....+...+.+..|+.+|++.  |..|..++.+
T Consensus      1760 asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1760 ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDV 1835 (2235)
T ss_pred             hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHH
Confidence            34455545556778888888875 7789999999998886653  58889999999999999999876  5789999999


Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCC---chhHHHHHh----------cCChHHH
Q 011316           98 LTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPL  163 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~l  163 (488)
                      |..+++ +++....-.+.|++..+..+ ..+.++..|..++..++.+..+.   |..+-.++.          .+.-+..
T Consensus      1836 LYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAa 1914 (2235)
T KOG1789|consen 1836 LYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAA 1914 (2235)
T ss_pred             HHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHH
Confidence            999999 77777777777777777664 45678999999999999987542   211111111          0111333


Q ss_pred             HHHhcc-cccH------hHHHHHHHHHHHhhc----CC---C--------------------------------------
Q 011316          164 LAQFNE-HAKL------SMLRNATWTLSNFCR----GK---P--------------------------------------  191 (488)
Q Consensus       164 ~~~l~~-~~~~------~v~~~a~~~L~~l~~----~~---~--------------------------------------  191 (488)
                      +..+.. ++++      ..+......+..+..    ..   +                                      
T Consensus      1915 VH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~L 1994 (2235)
T KOG1789|consen 1915 VHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNL 1994 (2235)
T ss_pred             HHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcc
Confidence            333321 1111      222222222222211    00   0                                      


Q ss_pred             CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          192 QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       192 ~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      ........+.+..+.+++..++  .....-...++..+.+..+.....+-..|.+|.++..+...+..+-..|+++|..+
T Consensus      1995 R~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~L 2074 (2235)
T KOG1789|consen 1995 RHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHEL 2074 (2235)
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHH
Confidence            0111223444555556665433  22223333344444555555555566669999999999887777779999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 011316          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA  339 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~  339 (488)
                      +. +..+.+.+.....+..+++.+...  ....--|+.+|..+.. ...+.....++.|.+|.|+.+|...
T Consensus      2075 se-n~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2075 SE-NQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             hh-ccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            87 555666676667777788877665  2334477788887776 3455666677899999999999875

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.54  E-value=1.6e-06  Score=66.24  Aligned_cols=154  Identities=10%  Similarity=0.059  Sum_probs=125.5

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      +.+..|+.-.+...+.+.+.....-|.|++.. |-+...+.+.++++..+..+...+..+++.++.+|+|++.  ++...
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHH
Confidence            34566777666665888999999999999876 7777888899999999999999999999999999999987  45778


Q ss_pred             HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316          364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       364 ~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  443 (488)
                      +.+.+.++++.++..++++...++..++.++..+...+..            .++.+-....++.++.+..+.+-+.+..
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999998888888888766544443            3666666667888888877777777888


Q ss_pred             HHHHHHHhc
Q 011316          444 AVKILETYW  452 (488)
Q Consensus       444 a~~~l~~~~  452 (488)
                      |...++++.
T Consensus       161 a~~fl~~~~  169 (173)
T KOG4646|consen  161 ASAFLDKHV  169 (173)
T ss_pred             HHHHHHhhc
Confidence            888777654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=4.4e-05  Score=73.86  Aligned_cols=221  Identities=14%  Similarity=0.137  Sum_probs=150.3

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-----hhHH
Q 011316          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-----DKIQ  236 (488)
Q Consensus       162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~  236 (488)
                      .++.+. .+.|..|+.+|+.+|..|..+.     ..-.-.....++++.+.+..|+..|+..+.......+     ...+
T Consensus       202 ~l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  202 GLIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            356666 7788999999999999888743     2223456678889999999999999777665543221     1111


Q ss_pred             HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH--hc
Q 011316          237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA  314 (488)
Q Consensus       237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl--~~  314 (488)
                      .=....++..+...+.+-+..+|..|...|+.+-.-+++...+.++..++..+-..=.      ..+......++-  ++
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSS  349 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCccc
Confidence            1122267788888999999999999999999987766665555554433332211110      011111112221  11


Q ss_pred             -----------CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011316          315 -----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       315 -----------~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~  383 (488)
                                 ...+.-..++.+|.--.++.-+.+.-.+||..|...++.++... +.....     .++.|++++.++.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHH
Confidence                       11223445777888888888888888899999999999999754 333333     5889999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 011316          384 PRIVTVCLEGLENILKA  400 (488)
Q Consensus       384 ~~v~~~al~~L~~l~~~  400 (488)
                      ..+|..++.+|..|...
T Consensus       424 ~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=0.00027  Score=69.06  Aligned_cols=290  Identities=16%  Similarity=0.161  Sum_probs=185.8

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      +..+.+=|.+.+ +....-|+.+++|+.+  .+.++.+.     +-+-++|.+  ...-++..|+-+|..|.+.+|+.  
T Consensus       113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl--  182 (938)
T KOG1077|consen  113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL--  182 (938)
T ss_pred             HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence            344555566777 7888999999999976  45555543     223355655  34678888888888888776653  


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-------------CChhHHHH
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------------NDDEVLTD  219 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-------------~~~~v~~~  219 (488)
                       +-..+...+++.+| ++.+-.+...+...+..++...+..........+..|..+...             +.+-++..
T Consensus       183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence             22234678899999 6666777788888888888877655555555555555555431             34677888


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC----C---cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----S---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      +++.|.+.-...+.-.. ..-..+++.++...+.+    +   ...+.+.+.-.-+++.+.+..-..+.  ..+..|-++
T Consensus       261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f  337 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF  337 (938)
T ss_pred             HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence            88888887432221111 11113445555444421    1   12333344444455544443333222  357788889


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCC
Q 011316          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC  371 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  371 (488)
                      |.+. ...+|.-|+...+.++.. ......+-.+  .+.++..|+ ..|..+|+.|+..|..++...   ..+.     .
T Consensus       338 ls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----I  405 (938)
T KOG1077|consen  338 LSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----I  405 (938)
T ss_pred             hhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----H
Confidence            9998 889999999999999875 2223333332  666777788 669999999999999998654   3444     4


Q ss_pred             hHHHHhhcCCCCHHHHHHHH
Q 011316          372 IKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       372 ~~~L~~ll~~~~~~v~~~al  391 (488)
                      +.-|.++|.+.+..+++...
T Consensus       406 V~elLqYL~tAd~sireeiv  425 (938)
T KOG1077|consen  406 VAELLQYLETADYSIREEIV  425 (938)
T ss_pred             HHHHHHHHhhcchHHHHHHH
Confidence            66777888888877776543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=0.00017  Score=70.41  Aligned_cols=338  Identities=15%  Similarity=0.128  Sum_probs=199.0

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316           77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      .-+++|+++.. .-+.-.-..+..+...+.+..+.     ++..+.+=|.+.++.....|+.+++|+-+.  +.++.+. 
T Consensus        78 EaV~LLss~ky-sEKqIGYl~is~L~n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-  148 (938)
T KOG1077|consen   78 EAVNLLSSNKY-SEKQIGYLFISLLLNENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-  148 (938)
T ss_pred             HHHHHhhcCCc-cHHHHhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-
Confidence            34567766653 22222333344444433332222     245555666678889999999999999532  2233322 


Q ss_pred             cCChHHHHHHhccc-ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316          157 NGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       157 ~~~i~~l~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  235 (488)
                          .-+-++|... ...-++..++.++..|.+..  .......+....++.+|.+.+..+...+...+..++...++..
T Consensus       149 ----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y  222 (938)
T KOG1077|consen  149 ----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY  222 (938)
T ss_pred             ----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence                2233555333 34457788888888888774  3334445788899999999999999999999999997776554


Q ss_pred             HHHHHhCCHHHHHHhcC-------------CCCcchHhHHHHHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccc----
Q 011316          236 QAVIEAGVCPRLVELLR-------------HPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNY----  297 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~-------------~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~----  297 (488)
                      ...+- ..+..|..+..             -+.|.++...++.|.++-...+.. +..+.  .+++.++...+.+.    
T Consensus       223 k~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~  299 (938)
T KOG1077|consen  223 KTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKK  299 (938)
T ss_pred             hhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccc
Confidence            42211 12222222221             145677888888888774432222 22221  23444444444211    


Q ss_pred             --hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHH
Q 011316          298 --KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL  375 (488)
Q Consensus       298 --~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L  375 (488)
                        ....+...++-..+++.+-+..-..+.  ..+..|.+++.+....+|--|+..++.++.....  ...+..  -.+.+
T Consensus       300 vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~--h~d~I  373 (938)
T KOG1077|consen  300 VQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKK--HQDTI  373 (938)
T ss_pred             hHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHH--HHHHH
Confidence              122333444445566553222112222  3678899999999999999999999999876422  122211  26777


Q ss_pred             HhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          376 CDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       376 ~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +..|+ ..|..+|..+++.|..++..+..             +...  .+.++.|.....+-.+++..+++.+-++|..
T Consensus       374 i~sLkterDvSirrravDLLY~mcD~~Na-------------k~IV--~elLqYL~tAd~sireeivlKvAILaEKyAt  437 (938)
T KOG1077|consen  374 INSLKTERDVSIRRRAVDLLYAMCDVSNA-------------KQIV--AELLQYLETADYSIREEIVLKVAILAEKYAT  437 (938)
T ss_pred             HHHhccccchHHHHHHHHHHHHHhchhhH-------------HHHH--HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence            88888 78999999999999999866542             2222  2334555554444455666666666666543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.50  E-value=1.8e-05  Score=74.63  Aligned_cols=314  Identities=18%  Similarity=0.168  Sum_probs=197.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+.+...+-+++.+++..+.++++.++.+  ....+.+.+.++--.++.-|..++ +..-|++|++.+..+.... +..+
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~  103 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK  103 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence            34455455566699999999999998875  466777777776666666665543 3567899999998888732 2222


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      . +..|++..++.+.++.+..++..|+.+|+.++-.+|+   .+...|++..+++.+.+ +..++....+.++..+...+
T Consensus       104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence            1 2557899999999999999999999999999988775   67889999999999854 44458888899999998887


Q ss_pred             CCCChhhhhchHHHHHHhhcc-------CCh--hHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHh
Q 011316          191 PQPLFEQTRPALPALERLIHS-------NDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLI  260 (488)
Q Consensus       191 ~~~~~~~~~~~~~~L~~ll~~-------~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~  260 (488)
                      ..........-++.++.-+.+       ++.  +....+..++..+.+.=+...-.-.+. ..+..++..|..+.+++|.
T Consensus       179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence            554443332233333333221       122  345555556665554433222211111 4678899999999999999


Q ss_pred             HHHHHHhHhhcCCch-hhHHHh------hCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCh
Q 011316          261 PALRTVGNIVTGDDM-QTQCII------NHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII  329 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~-~~~~~~------~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l  329 (488)
                      ..+..+..+..-... ......      ..+-.   ..+..-.... .. ....-..--.++..+. .-....+++.|++
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~-~~~~~~~~~~~l~~~y~aLll~ili~~gL~  336 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KS-ILPHRSSKRPNLVNHYLALLLAILIEAGLL  336 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-cc-ccCccccccccHHHHHHHHHHHHHHHcChH
Confidence            999999888764321 111111      11111   0000000000 00 0000000011221111 1122345689999


Q ss_pred             HHHHHHHhcC-ChhHHHHHHHHHHHhc
Q 011316          330 GPLVNLLLNA-EFEIKKEAAWAISNAT  355 (488)
Q Consensus       330 ~~L~~ll~~~-~~~v~~~a~~aL~~l~  355 (488)
                      +.|+++..+. +..+..+|...|+.+.
T Consensus       337 ~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  337 EALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            9999999998 8889999999888775

>TIGR02270 conserved hypothetical protein

Probab=98.49  E-value=6e-05  Score=72.06  Aligned_cols=244  Identities=18%  Similarity=0.061  Sum_probs=170.2

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.++..|.....++++..++.++.....  +         ..+..|+..|.+.++.++..+..+|+.+-.  +    
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h----
Confidence            4678888888543337777766655532211  1         137899999999999999999999987621  1    


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                           .....|+..+ .+.++.++..++.++.....           ...+.+..++++.++.++..++.+++.+...  
T Consensus       117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                 2456778888 78888999888877766221           2356788889999999999999999987543  


Q ss_pred             hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316          233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                               ..++.|...+.+.++.||..|+..++.+-.  +         .....+....... ....+..+..++...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     345667777999999999999999977633  2         1234455544443 333444444444333


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011316          313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  392 (488)
Q Consensus       313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~  392 (488)
                        +.+         ..++.|..+++++.  ++..++++++.+-..            ..++.|+..++++.  +...|-+
T Consensus       237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHH
Confidence              222         36778888888754  899999999988542            25778888877443  8888999


Q ss_pred             HHHHHHHh
Q 011316          393 GLENILKA  400 (488)
Q Consensus       393 ~L~~l~~~  400 (488)
                      ++..|.-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99888654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.46  E-value=0.00016  Score=68.60  Aligned_cols=251  Identities=27%  Similarity=0.318  Sum_probs=176.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++.+.+++..++..+++.+..+-..            ..++.+.+++.+.+ +.+|..|+.+|+.+-.  +   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence            4678899999999999999999997775432            37899999999999 8999999998887764  1   


Q ss_pred             HHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---------cH--hHHH
Q 011316          110 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---------KL--SMLR  177 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---------~~--~v~~  177 (488)
                            ..++.++.++. +++..+|..+.++|+.+-..           ..+.+++..+.+..         ..  .++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  34788999888 59999999999999998422           13666777773222         01  3556


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc
Q 011316          178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  257 (488)
Q Consensus       178 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  257 (488)
                      .+...+..+-..          ..++.+...+.+.+..++..+..+|+.+....         ..+.+.+...+.+++..
T Consensus       168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            666666655443          46677888888888888888888888877654         24457777888888888


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      ++..++..++.+-..           .....+...+... +..++..+...+...  ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            888888888776442           2345667777666 665555555444411  101         12344555556


Q ss_pred             cCChhHHHHHHHHHHHhccC
Q 011316          338 NAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~  357 (488)
                      +....++..+..++......
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            66677777777777777553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=3.6e-05  Score=74.43  Aligned_cols=227  Identities=16%  Similarity=0.158  Sum_probs=153.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC------CC
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK------PQ  192 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~------~~  192 (488)
                      ..+..+..+.+..+|..|+..|..|..+.. ..+.     .....++++ .+.+..|+..|+.+++-...-.      ..
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            336677777888888888888887765322 2222     234566677 7778889988866665544332      22


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-----------------------------------
Q 011316          193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-----------------------------------  237 (488)
Q Consensus       193 ~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-----------------------------------  237 (488)
                      ........++..+...+++....|+..|..+|+.+-..+.+.+..                                   
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence            233344567778888888888888888888887665444333222                                   


Q ss_pred             ---------------HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHH
Q 011316          238 ---------------VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  302 (488)
Q Consensus       238 ---------------~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~  302 (488)
                                     ++..|....++.-+.++-.+||.+|...++.|+...+....     ..+..|++++++. ...||
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VR  427 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVR  427 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHH
Confidence                           23333445555556666667999999999999998776544     4577899999998 88999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316          303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  365 (488)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  365 (488)
                      ..|..+|..++.+      -.+....++.++..|.+.+.++|+..-..|++.- ..+.+....
T Consensus       428 L~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m  483 (823)
T KOG2259|consen  428 LKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDM  483 (823)
T ss_pred             HHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence            9999999988764      1122335777888888888888887777776653 344444444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.41  E-value=1.6e-05  Score=70.12  Aligned_cols=235  Identities=14%  Similarity=0.159  Sum_probs=158.1

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-CCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      +.|-++++.-+ +-.+.-|++|+.++.. .++.|..... ...-..+...+++  +..+++.+.+.+++.++..+ .+.+
T Consensus       152 eyLgkl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aq  228 (432)
T COG5231         152 EYLGKLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQ  228 (432)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHH
Confidence            34445555555 6678889999999998 7888887764 3455667777776  67899999999999887553 3443


Q ss_pred             HHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhc-c--CChhHHHHHHHHHHH
Q 011316          153 LVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIH-S--NDDEVLTDACWALSY  226 (488)
Q Consensus       153 ~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L~~ll~-~--~~~~v~~~al~~L~~  226 (488)
                      .+-. -..+.-++.+......+.+.+-++..+.+++...+.....  ...+-+...++.|. .  .|++++...-..=..
T Consensus       229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~  308 (432)
T COG5231         229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR  308 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            2222 1346667777766667889999999999999854333222  22332333344443 2  244444333222221


Q ss_pred             hccCC----------------------c--------hhHHHHHHh--CCHHHHHHhcCCCCcc-hHhHHHHHHhHhhcCC
Q 011316          227 LSDGT----------------------N--------DKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGD  273 (488)
Q Consensus       227 l~~~~----------------------~--------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~  273 (488)
                      +..+.                      +        .....+.+.  .++..|.++++...+. ...-||.-++.+.+..
T Consensus       309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~  388 (432)
T COG5231         309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS  388 (432)
T ss_pred             HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence            21110                      0        011223322  4778888999887766 5667889999999999


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      |+....+.+.|+-+.++.+++++ +++||.+|..++..+..
T Consensus       389 PE~~~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         389 PEINAVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             chHHHHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            99999899999999999999999 99999999999877653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.40  E-value=8.6e-05  Score=70.79  Aligned_cols=350  Identities=13%  Similarity=0.110  Sum_probs=202.8

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      .++--|+.|+-.|.++-.++      .+.    .-.+++.+..+.+   ........++...+...+++.+.++     .
T Consensus       202 ~~~isqYHalGlLyq~kr~d------kma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTD------KMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhccc------HHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence            44566777777777643221      122    2234444443321   2223344556666666677776665     4


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      |.|-..+++.-.-+.-.+++.++.++..+-.  ....+ ..+..|-.+| .+.....+-.|..+|..++...|.......
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vcN  342 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVCN  342 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence            7777788887788888888888888754411  12211 1344555555 677778899999999999988765544333


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                          +-+-.++.+.+..+..+|+.+|..-  +.++.+..++  ..++.++.=+.++   .+.-++.++..|+-..+....
T Consensus       343 ----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv--~~I~sfvhD~SD~---FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         343 ----KEVESLISDENRTISTYAITTLLKT--GTEETIDRLV--NLIPSFVHDMSDG---FKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             ----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH--HHHHHHHHhhccC---ceEEeHHHHHHHHhhCcHHHH
Confidence                3345566777777777776666543  2333334333  2234444333333   344444444444443443332


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                           ..+..|...|......+.++.+..++.......|+....     ++..|+..+.+-.  .-+-+...|+-+...+
T Consensus       412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~Eg  479 (898)
T COG5240         412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREG  479 (898)
T ss_pred             -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccC
Confidence                 234556665544437788899999999888865554433     4556777777652  2244555555554433


Q ss_pred             CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011316          359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  438 (488)
Q Consensus       359 ~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~  438 (488)
                      ...-.+    ...+..+.+-+--.+..+|..|+.+|.++.-.....-          ..+.     ....+...+++.++
T Consensus       480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----------~~~s-----v~~~lkRclnD~Dd  540 (898)
T COG5240         480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----------SPQS-----VENALKRCLNDQDD  540 (898)
T ss_pred             CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----------cHHH-----HHHHHHHHhhcccH
Confidence            111000    0134455554445677889999999988743222111          0111     23457777899999


Q ss_pred             HHHHHHHHHHHHhc
Q 011316          439 EIYEKAVKILETYW  452 (488)
Q Consensus       439 ~v~~~a~~~l~~~~  452 (488)
                      +|+++|...++.+-
T Consensus       541 eVRdrAsf~l~~~~  554 (898)
T COG5240         541 EVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.36  E-value=2.6e-05  Score=80.36  Aligned_cols=268  Identities=15%  Similarity=0.144  Sum_probs=177.6

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC---Cch
Q 011316           32 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---TSE  107 (488)
Q Consensus        32 i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~---~~~  107 (488)
                      ++.+..++++ ...+.+..|+..|..+...-.    ++..-..++|.++.++.++. .++|..|+.+|+.+...   -+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4556666665 456778889888888765432    22233468999999999999 99999999998887652   233


Q ss_pred             hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhC------------------CCchh-----------HHHHHhc
Q 011316          108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG------------------DSPKC-----------RDLVLSN  157 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~------------------~~~~~-----------~~~~~~~  157 (488)
                      .-..+...-++|.|-.++.+ ....+|..-+..|+.|+.                  +.++.           ...+.  
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--  576 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH--  576 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH--
Confidence            33334445678888888877 445556555666665542                  11111           00010  


Q ss_pred             CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011316          158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       158 ~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      ..++..+.-|..++++-|++..+..|.-||....  +.....-+++.|+.+|.+.|+.+|..-...|.-++-.-..+   
T Consensus       577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---  651 (1431)
T KOG1240|consen  577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---  651 (1431)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---
Confidence            1133333222255566777777777777765421  11112346788999999999999988888777666432211   


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      -++..++|.|.+.|.+.++.|...|++++..|+...--....+.  .+++.+..+|-++ +.-+|+.++..|...+.
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            13447789999999999999999999999999874332222222  3667788888999 99999999999988776

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=5.3e-05  Score=79.94  Aligned_cols=338  Identities=13%  Similarity=0.129  Sum_probs=200.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHH
Q 011316           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRV  111 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~  111 (488)
                      ..+...+.|++|..|..++.-|..+...-....-.......+...+.++|.+.+ +-+|..|.+.++-+-+ ++...++.
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~  899 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS  899 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence            345556678999888876554444444322122222223345688889999888 7888888888776554 33344443


Q ss_pred             HHhCCCHHHHHHhhCC---------CCHHHH-------------HHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316          112 VIDHGAVPIFVRLLSS---------PTDDVR-------------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE  169 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~~---------~~~~~~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  169 (488)
                      +     +..|+.-|..         ++.++-             -....-|++|+.+-.       +...+-..+++.+.
T Consensus       900 L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh  967 (1702)
T KOG0915|consen  900 L-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANH  967 (1702)
T ss_pred             H-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhh
Confidence            3     4445444322         111111             111223444443211       00122334444433


Q ss_pred             cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316          170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      +-.-.-+.-|+.-+..++..............+|.|.++=.+++..|+..-..+-..+............+ .+++-|+.
T Consensus       968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen  968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred             hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence            33334455666677777766544444556778888888888899999887777777777765555554444 77888888


Q ss_pred             hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHH---HHHHHHhcC-----CHHHHH
Q 011316          250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC---WTISNITAG-----NVNQIQ  321 (488)
Q Consensus       250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~---~~L~nl~~~-----~~~~~~  321 (488)
                      -+.+..+.+|+++|-+|..+..+.+.....-.-..+...+.+.+++- .+.||..|-   .+++.++..     +...-+
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence            89999999999999999999997653211100113455556666665 667777654   445544431     111122


Q ss_pred             HHHHcCChHHHHH--HHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011316          322 AIIEAGIIGPLVN--LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       322 ~l~~~~~l~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  389 (488)
                      ..++ .++|.|+.  ++ +.-.++|..++.++..++..........+.  .+++.|++....-++.+...
T Consensus      1126 ~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1126 EALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred             HHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHH
Confidence            2222 25555543  22 446789999999999999877655555543  37888888887666655433

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.35  E-value=0.0014  Score=63.88  Aligned_cols=350  Identities=15%  Similarity=0.142  Sum_probs=201.7

Q ss_pred             HHHHHHHhcCCCH---HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           32 LPAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        32 i~~l~~~L~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +|.++..|.+.++   ......+.+|..+...  .+....+.. ..+..+...++.+.+.+....++.++..+.....+.
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            3677888876544   5566788888886653  233333322 455555555554444667777788888776633222


Q ss_pred             h-----HHHHhCCCHHHHHHhhCC-----C--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--------
Q 011316          109 T-----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--------  168 (488)
Q Consensus       109 ~-----~~~~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------  168 (488)
                      .     ....+..+++.+.+....     .  ++.+...+..++..+.+.-+.-+..-    .+..+..+..        
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~  153 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPF  153 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCC
Confidence            2     333344477777775532     2  25666666666666665443322211    1333333331        


Q ss_pred             -cccc--HhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCC--chhHHHHHHh
Q 011316          169 -EHAK--LSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT--NDKIQAVIEA  241 (488)
Q Consensus       169 -~~~~--~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~  241 (488)
                       ...+  ..........+.. ++.-++..........+..++.+..+ .++..+..++.+++.++..-  ++...     
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----  228 (415)
T PF12460_consen  154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----  228 (415)
T ss_pred             CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----
Confidence             0011  0112222222222 22222222322444577777777654 46888899999998888552  22222     


Q ss_pred             CCHHHHHHhc-CCCCcchHhHHHHHH----hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316          242 GVCPRLVELL-RHPSPSVLIPALRTV----GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       242 ~~l~~L~~lL-~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      +++..+.... ....+..+..++.++    ..+...+.....     ..++.++.++.+   +.+...++..+.-+....
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence            3333343333 233344444444444    444433333322     346678888876   467788888888777652


Q ss_pred             HH--------HHHHHHHc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 011316          317 VN--------QIQAIIEA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP  384 (488)
Q Consensus       317 ~~--------~~~~l~~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  384 (488)
                      ++        ..+.+.+.    .++|.|++-....+...|...+.||.++..+-+......=. ..+++.|.+.|+.++.
T Consensus       301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~  379 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDA  379 (415)
T ss_pred             HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCH
Confidence            22        22223322    36788888888777779999999999999876544333222 2589999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 011316          385 RIVTVCLEGLENILKAGE  402 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~  402 (488)
                      +++..++.+|..++...+
T Consensus       380 ~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  380 DVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHHcCH
Confidence            999999999999987654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.34  E-value=4.7e-05  Score=78.54  Aligned_cols=297  Identities=15%  Similarity=0.096  Sum_probs=191.3

Q ss_pred             CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC----C
Q 011316          117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----P  191 (488)
Q Consensus       117 ~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~----~  191 (488)
                      +++.+...+++ ...+.+..|+..|..++.....   ...-..+++.++.++ .++...||..|+.+|..+...-    +
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            34556666665 5678888999999998865432   111224788888888 8888999999999998776533    3


Q ss_pred             CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011316          192 QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       192 ~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      ........-++|.|..++.+ ....++..-+.+|..++...    ..+.+...-.....+++.++.+..         --
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nset~---------~~  565 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSETA---------PE  565 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccccc---------cc
Confidence            44555667888999988887 55667777777777776432    112222111122223444333300         00


Q ss_pred             cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011316          271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      .......+.+. ..+-+.+..++.++ ++-||+..+..|+-|+.-....   --+.-+++.|+..|++.|+.+|..-...
T Consensus       566 ~~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  566 QNYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             cccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhh
Confidence            11112222222 24556677788877 7889988888888777510000   0012368999999999999999776666


Q ss_pred             HHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHH
Q 011316          351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE  430 (488)
Q Consensus       351 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~  430 (488)
                      +.-++..-...    -.+...++.|.+-|.++++.|+..|+++|..+++.+--.+.              .-...++...
T Consensus       641 I~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------------~v~~i~~~v~  702 (1431)
T KOG1240|consen  641 IVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------------AVKDILQDVL  702 (1431)
T ss_pred             ccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------------HHHHHHHhhh
Confidence            66554322211    12335789999999999999999999999999987653321              1112245566


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcC
Q 011316          431 NLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       431 ~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      -++-++|.=|+..+..+|-...+
T Consensus       703 PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  703 PLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             hheeCchHHHHHHHHHHHHHHHh
Confidence            77889999999999888865444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00035  Score=74.06  Aligned_cols=316  Identities=17%  Similarity=0.146  Sum_probs=186.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      -.-+.-|+.-+..+++... +..+.. -...||.|.+.=-+++ +.+|.....+...+..+.....+...+ .++.-|+.
T Consensus       971 wnSk~GaAfGf~~i~~~a~-~kl~p~-l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQAG-EKLEPY-LKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred             hhcccchhhchHHHHHHHH-HhhhhH-HHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence            3445556777777666542 111111 2247888888877888 899988888888888755555555443 56788888


Q ss_pred             hhCCCCHHHHHHHHHHHhhhhCCCchh--HHHHHhcCChHHHHHHhcccccHhHHHHH---HHHHHHhhcCC-----CCC
Q 011316          124 LLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNA---TWTLSNFCRGK-----PQP  193 (488)
Q Consensus       124 lL~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~v~~~a---~~~L~~l~~~~-----~~~  193 (488)
                      -+.+....+|+.++.+|..|.++.|.-  .+.+.  .....+++.+ ++-.+.+|..+   +.+|+.+|-..     ...
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            888889999999999999999876532  12222  2344445555 55556666654   45555555332     122


Q ss_pred             ChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh-HHHHH------
Q 011316          194 LFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI-PALRT------  265 (488)
Q Consensus       194 ~~~~~~~~~~~L~~-ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~-~a~~~------  265 (488)
                      .......++|.++. -+-+.-.+++..++.++..++...+....... ..+++.|+.....-++.+.. .++++      
T Consensus      1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence            22233444554442 11255689999999999999987765444222 25667777766654443322 22222      


Q ss_pred             ----HhH-hhcCCch--hhHHHh-------hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011316          266 ----VGN-IVTGDDM--QTQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       266 ----L~~-l~~~~~~--~~~~~~-------~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  331 (488)
                          +.. .+.+++.  .....+       =...+|.+.++++.+-.-..|..++..++-++..-........ -..+..
T Consensus      1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRA 1281 (1702)
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHH
Confidence                111 1111110  000000       0134556666665554455566666666666542111111111 124666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316          332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++..+.+.++.+++..+.|.+.++....+++.+.+++
T Consensus      1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred             HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            7777777899999999999999999888888777654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.28  E-value=0.0002  Score=67.87  Aligned_cols=248  Identities=24%  Similarity=0.305  Sum_probs=169.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.+.+++.+++ ..+|..+.+.++.+..           ...++.+..++.+.++.+|..+..+|+.+-  .+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence            46888999999997 8999999999766654           235899999999999999999999888873  222   


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh------------hHHHHH
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA  220 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~------------~v~~~a  220 (488)
                            .++.++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  57888898855788999999999999876543          36667777766542            234444


Q ss_pred             HHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316          221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ...+..+..           ...++.+...+.+....++..+...|+.+...+         ..+...+...+.++ +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444443321           134566777777777788888888888877644         23456677777777 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  380 (488)
                      +|..++.+++.+-..           ...+.+...+.+.+..++..+..++...   ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGAL---DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhccc---Cch---------hhHHHHHHHhh
Confidence            888888888776432           1456667777777776666665555511   100         12334444555


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 011316          381 CPDPRIVTVCLEGLENI  397 (488)
Q Consensus       381 ~~~~~v~~~al~~L~~l  397 (488)
                      +....++..+..++..+
T Consensus       286 ~~~~~~~~~~~~~l~~~  302 (335)
T COG1413         286 DEANAVRLEAALALGQI  302 (335)
T ss_pred             cchhhHHHHHHHHHHhh
Confidence            55556665555555544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=0.00073  Score=68.97  Aligned_cols=352  Identities=16%  Similarity=0.135  Sum_probs=215.8

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      ++....+..-++.++.. +.++..++.-+++++..-+.   .....++++.+..+..++...+|..|...+.++...-..
T Consensus       234 vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~  309 (759)
T KOG0211|consen  234 VKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD  309 (759)
T ss_pred             HHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence            33344555556666666 89999999999988873333   566778899999999998999999999888887632211


Q ss_pred             hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-C-------------------------------------
Q 011316          150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-------------------------------------  191 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~-------------------------------------  191 (488)
                      -.  -......+.+++.. .+.+..++.........+...- +                                     
T Consensus       310 ~~--d~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l  386 (759)
T KOG0211|consen  310 DD--DVVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL  386 (759)
T ss_pred             ch--hhhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence            00  11122344555555 4444444433333333222111 0                                     


Q ss_pred             -CC--ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          192 -QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       192 -~~--~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                       ..  .......++|.+..++.+.+..++...+..+..+....+.  ..-+ ....+.+...+++..+.++....+.+..
T Consensus       387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~  463 (759)
T KOG0211|consen  387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSL  463 (759)
T ss_pred             CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHH
Confidence             00  0001123334444445555555555555555544432220  0001 1345666667777888888888877766


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      +-..++...........++.+..+-... .++++.+..+.+-.++....   ..++....-+.+...+.+....+++.|+
T Consensus       464 ~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa  539 (759)
T KOG0211|consen  464 LEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAA  539 (759)
T ss_pred             HHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence            6555554444445556777787777777 88999999998888876422   2233333445555566666788999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      ..+..++..-+.+..    ....++.+.....+++...|...+.++..+.......               +-....+..
T Consensus       540 ~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e---------------i~~~~Llp~  600 (759)
T KOG0211|consen  540 RNLPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE---------------ITCEDLLPV  600 (759)
T ss_pred             HHhHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH---------------HHHHHHhHH
Confidence            999888764332211    1134666666666667888888888888776654432               222334678


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          429 IENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       429 l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      +..+.+++.++|+-.+.+.+.++...
T Consensus       601 ~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  601 FLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             HHHhccCCchhhhhhHHHHHHHHHhh
Confidence            88899999999999999888876654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.21  E-value=1e-05  Score=61.93  Aligned_cols=134  Identities=13%  Similarity=0.112  Sum_probs=111.5

Q ss_pred             CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011316          158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       158 ~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      +.+..|+.-.....+.+.++....-|.|++.++.+........++...+..+..+|..+.+.++..|+|+|.... ..+.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence            346677777767789999999999999999988777777778899999999999999999999999999998764 4477


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      +.+.++++.++..+.++...+...++..+..++.+....+..+....++..+...
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            9999999999999999988899999999999998777777666654444444443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.21  E-value=0.00017  Score=63.92  Aligned_cols=237  Identities=17%  Similarity=0.158  Sum_probs=149.0

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      .+-++++.-++-.+.-|.+++.++......+.....+..+-..++.++++  ...+++..++.+++.++. ++...+.+-
T Consensus       153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~  231 (432)
T COG5231         153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDID  231 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHH
Confidence            33344455566678888899999887665554444444556677888876  356789999999999987 444442221


Q ss_pred             h-CCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHH-HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011316          282 N-HQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAII-EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS  356 (488)
Q Consensus       282 ~-~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~-~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~  356 (488)
                      + ...+..++.+.+......|-+-++.++.|++.. ..+.+..+. ..++.+....+...+  |.+++...-..=..+..
T Consensus       232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~  311 (432)
T COG5231         232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence            1 245666777776665677888899999999883 334444443 444555554444443  55554333222222211


Q ss_pred             CC---------------------C--------HHHHHHHHHC--CChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhh
Q 011316          357 GG---------------------S--------NEQIKFLVSQ--GCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       357 ~~---------------------~--------~~~~~~l~~~--~~~~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~  404 (488)
                      +.                     +        ......+.+.  ..+..|..+++..++. ....|+.-+..++...+. 
T Consensus       312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-  390 (432)
T COG5231         312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-  390 (432)
T ss_pred             hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence            10                     0        0112222221  2356666667665555 445566666777766554 


Q ss_pred             hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                                 ....+..-|+-+.+.+|++|++++|+-.|...+..+..
T Consensus       391 -----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         391 -----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             -----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence                       37888999999999999999999999999998877654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.20  E-value=0.0014  Score=66.36  Aligned_cols=140  Identities=16%  Similarity=0.135  Sum_probs=101.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .|.+++.+.+.|.+++...-..|...+...+    +..+  =.++.+.+=+++++ +.+|..|++.++.+=.  ++... 
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~l--LavNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-  126 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELAL--LAVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-  126 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHH--HHHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence            3445555555556665555555555555431    1111  14677778888999 9999999999987754  33322 


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                          .+++.+.+++.++++.+|+.|+-++..+-+-++   +.+.+.|.+..+..++ .++|+.+..+|+.+|..+...
T Consensus       127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                347899999999999999999999999986654   3566666777777777 899999999999999988765

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.00011  Score=72.07  Aligned_cols=135  Identities=20%  Similarity=0.246  Sum_probs=95.6

Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316          200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       200 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      .+=+.+-+++.+.|+-+|...+.++.---....+       .+++..|+.. .++.+.+||+.|.-+|+-++...++.  
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence            4455667778888888887766655432111111       1556677776 56788999999999999999876643  


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                             .+..+.+|....++.||..++.+|+-.|.+  +.+         .+..|-.+..++..-||+-|+-+++-+..
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e---------Ai~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE---------AINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                   467788888777999999999999988874  222         33444445556667789999999888876


Q ss_pred             CCC
Q 011316          357 GGS  359 (488)
Q Consensus       357 ~~~  359 (488)
                      ..+
T Consensus       654 Q~t  656 (929)
T KOG2062|consen  654 QQT  656 (929)
T ss_pred             hcc
Confidence            543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.0023  Score=66.66  Aligned_cols=237  Identities=14%  Similarity=0.066  Sum_probs=147.3

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011316          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  239 (488)
Q Consensus       162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  239 (488)
                      .+.....++.+..+|..+...|..++..++..  .......+...+.+-+++.....+...+.+|..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34444445668899999999999999884222  2223345556666666777788889999999888866552222233


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc-------CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                      ...+.+.++. ++..+...++.+..+|..++.       +++. ....++ .++..+..-+-.. ...++...+.++..+
T Consensus       737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            3233344444 477788889999888888873       1111 011111 2233333333233 333333334555555


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011316          313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  392 (488)
Q Consensus       313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~  392 (488)
                      ..........-.-.+++..+..++.++.++++..|+..+..++..-+........+ .+++.+..+.++...+++..+-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence            44322222222223467777888889999999999999999998766555444332 46778888888778889988888


Q ss_pred             HHHHHHHhhhh
Q 011316          393 GLENILKAGEA  403 (488)
Q Consensus       393 ~L~~l~~~~~~  403 (488)
                      .|..++.....
T Consensus       892 LlekLirkfg~  902 (1176)
T KOG1248|consen  892 LLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHhCH
Confidence            88888766443

>PF05536 Neurochondrin: Neurochondrin

Probab=98.14  E-value=0.00016  Score=72.10  Aligned_cols=235  Identities=16%  Similarity=0.149  Sum_probs=164.6

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh---hHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhh
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN---TRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNV  143 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~~l  143 (488)
                      .++.-+++|+..+ ++-|..++..+.+++..++..   ++.+.+.=+.+.+-++|++       +....+..++.+|..+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3566778899888 788999999999999855532   3456676667888899987       4577888999999999


Q ss_pred             hCCCchhH--HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316          144 AGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC  221 (488)
Q Consensus       144 ~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al  221 (488)
                      |.+. +..  ..+.  +-+|.+++.+..+++..+...+..+|..++..+.........+.++.+.+.+.+ .+...+.++
T Consensus        85 ~~~~-~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   85 CRDP-ELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             cCCh-hhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            9843 332  2222  368999999955555689999999999999777777778888999999999987 566788888


Q ss_pred             HHHHHhccCCchhH-H---HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHHh----hCCChHHHHHH
Q 011316          222 WALSYLSDGTNDKI-Q---AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCII----NHQALPCLLDL  292 (488)
Q Consensus       222 ~~L~~l~~~~~~~~-~---~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~----~~~~~~~L~~l  292 (488)
                      .++.+++....... .   ..+ ..+++.+...+.......+...+..|+.+....+.. .....    -..+...+..+
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            88888775443110 0   001 134455555555555667788899998888765321 11111    22345566677


Q ss_pred             hcccchhhHHHHHHHHHHHHhc
Q 011316          293 LTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      +++...+.-|..+....+.+..
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHH
Confidence            7776566667777666666654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.00024  Score=67.89  Aligned_cols=288  Identities=15%  Similarity=0.081  Sum_probs=156.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      .|.|-..|++.- +.+...+++.++.++..+  ....+++ ..+..|-.+|.+.....|-.|+++|..++...|..   +
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v  338 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V  338 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence            455555666666 789999999999988733  1122222 24678888899999999999999999999877642   1


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011316          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  234 (488)
Q Consensus       155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  234 (488)
                      ..  +-+.+-.++ .+.+..+-..   ++..|............-..++..+.=+.++-..+...+++.|+.....   .
T Consensus       339 ~v--cN~evEsLI-sd~Nr~Isty---AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~---k  409 (898)
T COG5240         339 SV--CNKEVESLI-SDENRTISTY---AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS---K  409 (898)
T ss_pred             ee--cChhHHHHh-hcccccchHH---HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH---H
Confidence            11  111222233 4444444444   4444444332222222223333333333333344455555555544322   2


Q ss_pred             HHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316          235 IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       235 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      ..     ..+..|...|. .+.-+.+..+..++..+....|+-.+.     .++.|...+.+.+   .-+.+..+|+-+.
T Consensus       410 ~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce---y~~I~vrIL~iLG  476 (898)
T COG5240         410 KL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE---YHQITVRILGILG  476 (898)
T ss_pred             HH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc---hhHHHHHHHHHhc
Confidence            22     22333444332 344566777777777777655544432     3445666665542   2334455555554


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 011316          314 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG  393 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~  393 (488)
                      ...|.....   ...+..+..-+--.+.-+|..|..||..++.+.+......    .+...|-+++++.|.++|..|..+
T Consensus       477 ~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~----sv~~~lkRclnD~DdeVRdrAsf~  549 (898)
T COG5240         477 REGPRAKTP---GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ----SVENALKRCLNDQDDEVRDRASFL  549 (898)
T ss_pred             ccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH----HHHHHHHHHhhcccHHHHHHHHHH
Confidence            421110000   0012222222222355688888888888877654322222    345667778888888888888888


Q ss_pred             HHHHH
Q 011316          394 LENIL  398 (488)
Q Consensus       394 L~~l~  398 (488)
                      +.++=
T Consensus       550 l~~~~  554 (898)
T COG5240         550 LRNMR  554 (898)
T ss_pred             HHhhh
Confidence            87774

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.11  E-value=0.00078  Score=65.79  Aligned_cols=255  Identities=16%  Similarity=0.140  Sum_probs=166.1

Q ss_pred             CccHHHHHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC-----
Q 011316           63 SPPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----  128 (488)
Q Consensus        63 ~~~~~~~~~~~~i~~L~~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----  128 (488)
                      ......+....++..|.++-         ....++.+...|++||+|+...++..|..+.+.|..+.++..++..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            34455555555666666654         2333389999999999999999999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHhhhhCCCchhHHHHHhc-CChHHHHHHhccc----------------ccHhHHHHHHHHHHHhhcCCC
Q 011316          129 TDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNEH----------------AKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       129 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      +.++.-...++|.-++...+..+..+.+. +++..+...+..+                .+......++..+.|+....+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            78888889998888887776666665554 6666666655210                134456778888888887764


Q ss_pred             CCChhhh----hchHHHHHHhh---cc--CChhHHHHHHHHHHHhccCCchh-----------HHHHHHhCCHHHHHHhc
Q 011316          192 QPLFEQT----RPALPALERLI---HS--NDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELL  251 (488)
Q Consensus       192 ~~~~~~~----~~~~~~L~~ll---~~--~~~~v~~~al~~L~~l~~~~~~~-----------~~~~~~~~~l~~L~~lL  251 (488)
                      .......    ..++..+..++   ..  +.......++.+|.|+--.....           .........+..|+.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            4333222    33444444442   11  23566788888888773211110           00011123455566665


Q ss_pred             CC-----C---CcchHhHHHHHHhHhhcCCchhhHHHh----------------hCCChHHHHHHhcccchhhHHHHHHH
Q 011316          252 RH-----P---SPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       252 ~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                      +.     .   -.+.....+.+|..++......++.+.                ...+-..|++++.++ .+.+|..+..
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            32     1   124566678888888876544443332                235678899999999 5999999999


Q ss_pred             HHHHHhcCCHH
Q 011316          308 TISNITAGNVN  318 (488)
Q Consensus       308 ~L~nl~~~~~~  318 (488)
                      .+-.++..+..
T Consensus       331 llf~Lc~~d~~  341 (446)
T PF10165_consen  331 LLFVLCKEDAS  341 (446)
T ss_pred             HHHHHHhhhHH
Confidence            88888765444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.11  E-value=6.3e-06  Score=50.69  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=38.2

Q ss_pred             CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC
Q 011316          105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG  145 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~  145 (488)
                      +++++..+++.|+++.|+++|+++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.07  E-value=7.6e-05  Score=66.48  Aligned_cols=186  Identities=17%  Similarity=0.230  Sum_probs=117.9

Q ss_pred             CCCCcchHhHHHHHHhHhhcCC--chhhHHHhh--CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316          252 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .+.+++.|..++.-|..++.++  ......+.+  ..++..+...+.+. ...+...|+.++..++...........+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            5578899999999999998876  222222221  14556777777777 7889999999999998742333444444 3


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      ++|.|+..+.++...++..|..+|..++...+  ....+    ..+.+....++.++.++..++..+..++.........
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            78999999999888999999999999998764  11111    1566777889999999999999999998765511110


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                              +.....-....+.+..+..+.+++|++.|..++..|+.
T Consensus       169 --------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  169 --------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             --------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence                    01100012346778889999999999999999887765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.07  E-value=8.1e-06  Score=50.18  Aligned_cols=41  Identities=46%  Similarity=0.690  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       316 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ++++++.+++.|++|.|++++.++++++++.|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0074  Score=61.86  Aligned_cols=341  Identities=14%  Similarity=0.141  Sum_probs=196.5

Q ss_pred             HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc------CC-CChhHHHHHHHHHHHhcCC--CchhhHHHHhCCCHH
Q 011316           49 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASG--TSENTRVVIDHGAVP  119 (488)
Q Consensus        49 ~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~  119 (488)
                      .|...+..+.++.+.+..     .+.++.+++.|.      .+ ++++-+..|++.++++++.  .+..-+-.++.=+++
T Consensus       391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~  465 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN  465 (1010)
T ss_pred             HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence            355666666655433333     256667777776      22 2367788899999988851  111112223333466


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC---Chh
Q 011316          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFE  196 (488)
Q Consensus       120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~  196 (488)
                      .+...++++.--+|..|+|+++.++.-.-  ++...-..++....+.+..+.+-.|+..|+.+|..+..+.+..   ...
T Consensus       466 hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~  543 (1010)
T KOG1991|consen  466 HVFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA  543 (1010)
T ss_pred             HhhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence            66777888889999999999999984321  1222222356667777756788899999999999998887322   333


Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHH-HHhccCCchhHHHHHHhCCHHHHHHhcCC---C---CcchHhHHHHHHhHh
Q 011316          197 QTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---P---SPSVLIPALRTVGNI  269 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~---~~~v~~~a~~~L~~l  269 (488)
                      ...+.++.++.+.+.-+.+....++..+ +..+..-......+.. .+...+.+++..   .   +.+-...|.++|..+
T Consensus       544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti  622 (1010)
T KOG1991|consen  544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTI  622 (1010)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence            4566666677776655544444444433 2233222222222222 445556666653   1   223334455555444


Q ss_pred             hc---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          270 VT---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       270 ~~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      ..   .  +....-.-++..+++.+-.+|++. -.++-.+++..+.++....++.--.+.  |+++.+.+.+.....+--
T Consensus       623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf  699 (1010)
T KOG1991|consen  623 STILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYF  699 (1010)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHH
Confidence            32   1  111122223455677777788777 677778888887777764333222233  367788888888777778


Q ss_pred             HHHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHh
Q 011316          345 KEAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKA  400 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l-~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~  400 (488)
                      ....-+|.|....+.+.....- .-+-.......++.+.+  ..=.+.|++.+..++-.
T Consensus       700 ~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~  758 (1010)
T KOG1991|consen  700 TDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILN  758 (1010)
T ss_pred             HHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence            8889999998877654221110 01112334444454422  23345567777666543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.00042  Score=64.86  Aligned_cols=357  Identities=15%  Similarity=0.128  Sum_probs=180.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHH----
Q 011316           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVI----  113 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~----  113 (488)
                      ...+.+..+.+++|.++.+..+.+....-.-..++..+..++++.+ +.++..++..+..+...+   |+....+-    
T Consensus       118 e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s  196 (728)
T KOG4535|consen  118 ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCS  196 (728)
T ss_pred             hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCc
Confidence            4557788899999999998765444443334456667777888888 899999999988887522   23222220    


Q ss_pred             -------------------hCC------------------CHHH-----------------HHHhhCC--CCHHHHHHHH
Q 011316          114 -------------------DHG------------------AVPI-----------------FVRLLSS--PTDDVREQAV  137 (488)
Q Consensus       114 -------------------~~g------------------~i~~-----------------L~~lL~~--~~~~~~~~a~  137 (488)
                                         ...                  ++..                 ..+.+.+  ....+|-.|+
T Consensus       197 ~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~  276 (728)
T KOG4535|consen  197 SSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEAL  276 (728)
T ss_pred             cccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHH
Confidence                               000                  0000                 0000000  1123333344


Q ss_pred             HHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-----CCCChhhh-hchHHHHH-----
Q 011316          138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----PQPLFEQT-RPALPALE-----  206 (488)
Q Consensus       138 ~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~-~~~~~~L~-----  206 (488)
                      .+|..++.+-.-.+...++   +...+..-..+.++.++..+..++..+..+-     |....... .+.+-.+.     
T Consensus       277 qvl~~~a~~~~~~~~~~~~---l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~  353 (728)
T KOG4535|consen  277 QVLTLLARYFSMTQAYLME---LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL  353 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence            4444443222111111111   1111111114567788888888877765432     22222211 11111111     


Q ss_pred             -H-hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC
Q 011316          207 -R-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ  284 (488)
Q Consensus       207 -~-ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  284 (488)
                       . .-.+..+......+.++.++..........-.+.-.+..+..+-++++.-++..|++.++-+.-+........+-.+
T Consensus       354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~  433 (728)
T KOG4535|consen  354 PRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVAD  433 (728)
T ss_pred             hhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHH
Confidence             0 11223456677778888877743221111000000111111111333444677788888777765544444444445


Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHHhcC------CHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhc
Q 011316          285 ALPCLLDLLTQNYKKSIKKEACWTISNITAG------NVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNAT  355 (488)
Q Consensus       285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~------~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~  355 (488)
                      ....+...+.+. ....|..++|+++|+...      +++....=+..-.+..+.+.-..   ...+|+.++..+|+|+.
T Consensus       434 aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  434 AANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            667777778777 778899999999999851      22222111111123333333322   26789999999999997


Q ss_pred             cCCCH--HHHHHHHHCCChHHHHhh-cCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          356 SGGSN--EQIKFLVSQGCIKPLCDL-LNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       356 ~~~~~--~~~~~l~~~~~~~~L~~l-l~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ..-.+  +........+.+..+... .-...-+++=+++.+++|+++...
T Consensus       513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a  562 (728)
T KOG4535|consen  513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA  562 (728)
T ss_pred             HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence            53211  001111111222222221 112345788888999999886543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.01  E-value=9e-05  Score=65.98  Aligned_cols=186  Identities=19%  Similarity=0.129  Sum_probs=120.8

Q ss_pred             ccCChhHHHHHHHHHHHhccCC--chhHHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316          210 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  285 (488)
Q Consensus       210 ~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  285 (488)
                      .+.+++.+..++..|..++...  ......+.+.  .++..+...+.+....+...|+.++..++...........+ .+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence            4578999999999999988655  2222222221  56677788888888889999999999999865555444433 57


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhccCCC---HH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGGS---NE  361 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~  361 (488)
                      ++.|++.+.++ ...++..|..+|..++...+-..      .+ ++.+.....+.++.+|..++..+..+.....   ..
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            88899998888 88899999999999998534100      12 5566677788899999999999999987654   11


Q ss_pred             HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316          362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       362 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      ......-..+++.+...+.++++++|..+-.++..+....+.
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            111111124688889999999999999999999988766543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.015  Score=59.15  Aligned_cols=169  Identities=17%  Similarity=0.192  Sum_probs=125.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316           39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      +.|.+...+..|.+.+....+.. .+ .     ...++.+++...+.+ .+++.-.-.-+.+.++..|+....     .+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            67778888888888666554433 22 1     124666777777666 899988888888888866633222     36


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      +.+.+=++++++.+|..|+++++.+-  .++.-.     .++.++.+++ .+.++.||+.|+.++..+-+-+  ......
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence            88888899999999999999999882  222211     2567778888 8889999999999999998653  233344


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      .|....+..++.+.++.+...|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            56777888888899999999999999988654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0021  Score=59.67  Aligned_cols=246  Identities=12%  Similarity=0.120  Sum_probs=175.3

Q ss_pred             HHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----CC----ccHHHHHHcCCHHHHHHhhcCCC-----ChhHH
Q 011316           25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RS----PPINEVIQSGVVPRFIEFLSRDD-----FPQLQ   91 (488)
Q Consensus        25 ~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~----~~----~~~~~~~~~~~i~~L~~lL~~~~-----~~~v~   91 (488)
                      +-.++++++.++.+|.+++.++....+..+..+...+    +.    ..++.+++.++++.|++-+..=+     ..+-.
T Consensus       120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv  199 (536)
T KOG2734|consen  120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV  199 (536)
T ss_pred             HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence            3455699999999999999999999999999875432    11    23577788999999998876433     12334


Q ss_pred             HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-
Q 011316           92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-  168 (488)
Q Consensus        92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-  168 (488)
                      ..++.++-|+..-.++....+++.|.+.-|+.-+..  .-..-...|..+++-+..++.+.+...-..+++..+++.+. 
T Consensus       200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~  279 (536)
T KOG2734|consen  200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence            566778888888889999999998888887774433  34555677888888888888877777777888888888773 


Q ss_pred             ---cc----ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc--hhHHHHH
Q 011316          169 ---EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVI  239 (488)
Q Consensus       169 ---~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~  239 (488)
                         ++    ...+...+...+|+.+.....+........++....-+++. ....+..++.+|-....+++  +....++
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfV  358 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFV  358 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHH
Confidence               11    13467788888888888877666666666677766555554 66678888999988887665  5556677


Q ss_pred             HhCCHHHHHHhcC-CCC---------cchHhHHHHHHhHhhc
Q 011316          240 EAGVCPRLVELLR-HPS---------PSVLIPALRTVGNIVT  271 (488)
Q Consensus       240 ~~~~l~~L~~lL~-~~~---------~~v~~~a~~~L~~l~~  271 (488)
                      +..++..++.... .+.         .+.-+..+.+|+.+..
T Consensus       359 e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  359 EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            7777777666543 222         2233445555655554

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.0067  Score=62.73  Aligned_cols=253  Identities=14%  Similarity=0.147  Sum_probs=146.8

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011316          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  195 (488)
Q Consensus       116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  195 (488)
                      ++++.|+..+++.+..+|-.|+..++.++...|.  ..  ...++...+.++...+++..-..++.+|..++... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            4567777777888999999999999999977762  22  12356777777766667788889999999999875 1122


Q ss_pred             hhhhchHHHHHHhhcc--------CChhHHHHHHHHHHHhccCCch-hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316          196 EQTRPALPALERLIHS--------NDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       196 ~~~~~~~~~L~~ll~~--------~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      .....++|.+++.+.-        .-..||..|+.+++.+++.... ..+.+...=.-..+...+-+.+-.+|++|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            2335677777766652        2357899999999998865442 223233321222334445667778888888777


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH-HhcCChhHHH
Q 011316          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIKK  345 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~  345 (488)
                      -.........      ..+++. +...+.- .-..|..+...++.-....+..+..+++.     |+.. +.+-|..+|+
T Consensus       496 qE~VGR~~n~------p~Gi~L-is~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ire  562 (1133)
T KOG1943|consen  496 QENVGRQGNF------PHGISL-ISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIRE  562 (1133)
T ss_pred             HHHhccCCCC------CCchhh-hhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHHH
Confidence            6655421111      011111 1111111 22233444444444444444444433331     2111 2333777888


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011316          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al  391 (488)
                      .++++|.+++...     ......+.++.+++.....+...+..+.
T Consensus       563 laa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~  603 (1133)
T KOG1943|consen  563 LAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVF  603 (1133)
T ss_pred             HHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhH
Confidence            8888888876432     2223345666676666666655544433

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.92  E-value=0.0023  Score=64.76  Aligned_cols=321  Identities=12%  Similarity=0.104  Sum_probs=192.4

Q ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           35 MVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        35 l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      +...+. ++.|....++.+.+....+.. .. ...+ ..-++...++.+.-...+-++..|+++++..++  +..... .
T Consensus       454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~-~~-~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~  527 (1005)
T KOG2274|consen  454 IDNGLVYQESPFLLLRAFLTISKFSSST-VI-NPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-L  527 (1005)
T ss_pred             HHhhcccccCHHHHHHHHHHHHHHHhhh-cc-chhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-c
Confidence            334443 566777778999988766542 11 1111 112444555666555547889999999888884  222111 2


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh-cccccHhHHHHHHHHHHHhhcCCCC
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQ  192 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~v~~~a~~~L~~l~~~~~~  192 (488)
                      ..+++..|.++....+.++....+.+|+..+..+|+.... .+..+.+..+.+. ..++|+.+...+-.++..++... .
T Consensus       528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~  605 (1005)
T KOG2274|consen  528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-A  605 (1005)
T ss_pred             chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-H
Confidence            3477888888888888999999999999999988875433 3444555444443 35567877777777777777643 1


Q ss_pred             CChhhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHh
Q 011316          193 PLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVG  267 (488)
Q Consensus       193 ~~~~~~~~~~~~L~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~  267 (488)
                      ..-......+|.++..+..++    .....-++..|..+.++.+.-....+-.-+++.+.++. .+.+..+...+-.||.
T Consensus       606 ~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr  685 (1005)
T KOG2274|consen  606 NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR  685 (1005)
T ss_pred             hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence            222234568899999998765    66677788888877765443223233335677777775 4467788889999999


Q ss_pred             HhhcCCchhhHHHhhCC------ChHHHHHHhcccchhhHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHHHHH-
Q 011316          268 NIVTGDDMQTQCIINHQ------ALPCLLDLLTQNYKKSIKKEACWTISNIT----AGNVNQIQAIIEAGIIGPLVNLL-  336 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~------~~~~L~~lL~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~l~~L~~ll-  336 (488)
                      .+.....++...--..+      ++..+-++|+.    +.-..++..++.+.    .+-.......++. ++..++.-| 
T Consensus       686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq  760 (1005)
T KOG2274|consen  686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQ  760 (1005)
T ss_pred             HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHH
Confidence            98876554433222222      22333344432    33333443444333    3222222222221 333333333 


Q ss_pred             hcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316          337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      +.....+.+.-..+++++...........|..
T Consensus       761 ~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S  792 (1005)
T KOG2274|consen  761 QAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS  792 (1005)
T ss_pred             HhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            34467888888999999987654444444443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.0068  Score=62.69  Aligned_cols=261  Identities=13%  Similarity=0.108  Sum_probs=158.1

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchh
Q 011316           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~  150 (488)
                      +.+++.|+..+++.+ ..++=.|+..++.++...|..   ++ ..++...+.++.. +++..-..++-+|+.++...--.
T Consensus       340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            367888888889998 799999999999999866622   11 1345666665554 44666668999999998654222


Q ss_pred             HHHHHhcCChHHHHHHhc-------ccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHH-HhhccCChhHHHHHH
Q 011316          151 RDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALE-RLIHSNDDEVLTDAC  221 (488)
Q Consensus       151 ~~~~~~~~~i~~l~~~l~-------~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~-~ll~~~~~~v~~~al  221 (488)
                      -..+.  .+++.+++-+.       ......+|..|+++++.+++..... .........+.|+ ..+-+++-..|..|.
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            22222  24555555552       1235679999999999999876222 2222233333322 334456777888888


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH-hcccchhh
Q 011316          222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKS  300 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~~  300 (488)
                      .++........+.-      .+++ ++...+.-....+.++...++.-....+..+..++     ..++.. +.+- +..
T Consensus       493 AAlqE~VGR~~n~p------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~  559 (1133)
T KOG1943|consen  493 AALQENVGRQGNFP------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVK  559 (1133)
T ss_pred             HHHHHHhccCCCCC------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHH
Confidence            88776653322110      1111 11222222223344444444444444444444333     233332 5666 889


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      +|..++++|.+++...++.    ...+.++.++......+...+.-+..+.+.++.
T Consensus       560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            9999999999987754543    344678888888888888877766666666654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.91  E-value=4.6e-05  Score=56.31  Aligned_cols=87  Identities=28%  Similarity=0.443  Sum_probs=69.5

Q ss_pred             HHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316           75 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        75 i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      +|.|++.| ++++ +.+|..++++|+.+..  +         ..++.|..+++++++.+|..++++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57889999 6666 9999999999995432  1         34899999999999999999999999883         


Q ss_pred             HHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011316          154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~  184 (488)
                        ....++.+.+.+.++.+..++..|..+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12368889998866667778888888874

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.89  E-value=4.4e-05  Score=56.38  Aligned_cols=86  Identities=31%  Similarity=0.497  Sum_probs=69.7

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           32 LPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ||.|++.| +++++.+|..++++|.++-.            ...++.|++++++++ +.+|..|+++|+.+-.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            57899999 78999999999999985321            135899999998888 9999999999998732       


Q ss_pred             HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHh
Q 011316          111 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALG  141 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~  141 (488)
                          ...++.|.+++.+ ++..+|..|+.+|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                2368999998887 45667899988875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.87  E-value=0.0077  Score=58.74  Aligned_cols=297  Identities=15%  Similarity=0.098  Sum_probs=168.3

Q ss_pred             CHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcCC----C--ChhHHHHHHHHHHHhcCCCc-hhhHH
Q 011316           43 DRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSRD----D--FPQLQFEAAWALTNIASGTS-ENTRV  111 (488)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~~----~--~~~v~~~a~~~L~~l~~~~~-~~~~~  111 (488)
                      +.+.....+..+..++.......    .....+..+++.+.++....    .  ++.+...+..++..+...-+ +..+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            56666777777777766542222    23333445788887776322    1  13555556666666665333 33333


Q ss_pred             HHhCCCHHHHHHhhC----------C------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011316          112 VIDHGAVPIFVRLLS----------S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM  175 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~----------~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v  175 (488)
                      +     +..+..++.          .      .......-...+++.+-.+..-  ..  ....+..++.......++..
T Consensus       136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~~--~~~ll~~l~~~~~~~~~~~~  206 (415)
T PF12460_consen  136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL--PD--LEELLQSLLNLALSSEDEFS  206 (415)
T ss_pred             H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc--cC--HHHHHHHHHHHHHcCCChHH
Confidence            3     233333222          1      1112222223333333222210  01  11256677777656667888


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH----HHhccCCchhHHHHHHhCCHHHHHHh
Q 011316          176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL----SYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L----~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      +..++.+++.+...-+...  ....++..+..-+ ...+...+..++..+    .-+.-.......     ..+..|+.+
T Consensus       207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l  279 (415)
T PF12460_consen  207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL  279 (415)
T ss_pred             HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence            8899999988876632222  3344555555444 233344444444444    333323322222     456678888


Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCch--------hhHHHhhCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011316          251 LRHPSPSVLIPALRTVGNIVTGDDM--------QTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~~~~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      +.+  +++...+...++-+....+.        ..+.+.+..    +++.+++..+.. +...|.....+|+++..+-|.
T Consensus       280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~  356 (415)
T PF12460_consen  280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK  356 (415)
T ss_pred             hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence            877  56778888888888876232        222233333    455566666665 555888889999999986454


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316          319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      ..-.---..++|.|++.|..++.+++..++.+|..+....
T Consensus       357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            3322222348999999999999999999999999998765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.85  E-value=3.6e-05  Score=50.94  Aligned_cols=55  Identities=22%  Similarity=0.552  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      +.+|..|+++|++++...++....... .+++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998876776666444 5999999999999999999999999875

...

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.84  E-value=0.00013  Score=54.21  Aligned_cols=95  Identities=18%  Similarity=0.304  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  380 (488)
                      .|+.++.+|..++.+-+......++ .+++.++..+.++++.||..|+.+|.|++.....+...++-  .+++.|.++..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence            3677888888887754444555554 38999999999999999999999999999776555555544  48899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 011316          381 CPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       381 ~~~~~v~~~al~~L~~l~~  399 (488)
                      ++++.|+..| +.|-++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999987655 67766653

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.019  Score=58.99  Aligned_cols=392  Identities=13%  Similarity=0.096  Sum_probs=207.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+.+...++|+.--+|-+|||.+..+.+-+ -..-  ..-..++....+.|. +.+ -.++..|+.+|..+....+....
T Consensus       464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~d-f~d~--~~l~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  464 VNHVFPEFQSPYGYLRARACWVLSQFSSID-FKDP--NNLSEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             HHHhhHhhcCchhHHHHHHHHHHHHHHhcc-CCCh--HHHHHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhhhh
Confidence            334455556777788999999999987543 1111  122235666667777 555 78999999999999885554444


Q ss_pred             HHHhC--CCHHHHHHhhCCCCHHHHHHHHH-HHhhhhCCCchhHHHHHhcCChHHHHHHhcc--cc---cHhHHHHHHHH
Q 011316          111 VVIDH--GAVPIFVRLLSSPTDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HA---KLSMLRNATWT  182 (488)
Q Consensus       111 ~~~~~--g~i~~L~~lL~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~---~~~v~~~a~~~  182 (488)
                      .+...  +.++.|+.+.+.-+.+....++. .++..+..-..+...+. .+......+++..  +.   +.+-...|..+
T Consensus       540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi  618 (1010)
T KOG1991|consen  540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGI  618 (1010)
T ss_pred             hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence            33321  45566666666643333333333 33444433222222222 2344455566632  11   22222333344


Q ss_pred             HHHhh---cCCCCC---ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011316          183 LSNFC---RGKPQP---LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       183 L~~l~---~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      |..+.   ..-+..   .......++|.+-.++++.-.++-+.++..+.++.....+....+.  ++++.+.+.+....-
T Consensus       619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~  696 (1010)
T KOG1991|consen  619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI  696 (1010)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence            43332   221111   1122245566666677777778888888888877755443333333  677888888887766


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhC-----CChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011316          257 SVLIPALRTVGNIVTGDDMQTQCIINH-----QALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  330 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  330 (488)
                      ..-....-.|.|.......   .+.+.     -+...+..++.+.. ...-...|+..+.-+........+..+.. ++.
T Consensus       697 dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~  772 (1010)
T KOG1991|consen  697 DYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLE  772 (1010)
T ss_pred             HHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHH
Confidence            6777778888877653321   12211     12334444554421 22234456666665554222222222111 222


Q ss_pred             HHHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhhhh
Q 011316          331 PLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-----PDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       331 ~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      ..+.-+..  .+...+..++.+..|............|-+.|....+..+.-+     ....-++.++-+|..++..++.
T Consensus       773 ~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~  852 (1010)
T KOG1991|consen  773 LALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQD  852 (1010)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc
Confidence            22223333  3567888888888888777766777777777776554443221     1112234455556666666432


Q ss_pred             hhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHH
Q 011316          404 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV  445 (488)
Q Consensus       404 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~  445 (488)
                      ...         ....+.  +..+.+..+...--..++.+|.
T Consensus       853 ~~~---------~~e~l~--~l~~~lv~L~~~Lp~ala~ra~  883 (1010)
T KOG1991|consen  853 PQL---------PSEVLG--QLGPALVELLLSLPEALAERAQ  883 (1010)
T ss_pred             CCc---------hHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            221         122222  5567777777665444554443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0036  Score=62.41  Aligned_cols=286  Identities=14%  Similarity=0.132  Sum_probs=157.6

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh
Q 011316          117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  196 (488)
Q Consensus       117 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  196 (488)
                      ..+.+-.++++....+...+++++.++....+.  ...   ..+..+--++ .+....+|-.|..+|..++...|.....
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~---pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELA---PAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcc---hHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            356666778888889999999999998755432  111   1344333344 7778889999999999999877544433


Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      ..    .-+-.++.+.+..+...|..+|..-..  +.....+.  .-+..++.=+.++..-+...|+.+   +|...+..
T Consensus       320 cN----~elE~lItd~NrsIat~AITtLLKTG~--e~sv~rLm--~qI~~fv~disDeFKivvvdai~s---Lc~~fp~k  388 (865)
T KOG1078|consen  320 CN----LDLESLITDSNRSIATLAITTLLKTGT--ESSVDRLM--KQISSFVSDISDEFKIVVVDAIRS---LCLKFPRK  388 (865)
T ss_pred             cc----hhHHhhhcccccchhHHHHHHHHHhcc--hhHHHHHH--HHHHHHHHhccccceEEeHHHHHH---HHhhccHH
Confidence            32    234455666666666666655554332  22223232  223334444444443444444444   44433322


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .     .+.+..|..+|......+.++....++..++..+++...     .++..|+..+.+.  +...-+...|.-+..
T Consensus       389 ~-----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~  456 (865)
T KOG1078|consen  389 H-----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK  456 (865)
T ss_pred             H-----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence            2     244566666666554667777778888777775454332     2455566666554  222334444444433


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011316          357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD  436 (488)
Q Consensus       357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~  436 (488)
                      .+..    .-.....+..+.+...-.+..++..|..+|.++....+..            .     ....-.+...+.+.
T Consensus       457 EgP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l------------~-----~sI~vllkRc~~D~  515 (865)
T KOG1078|consen  457 EGPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL------------L-----PSILVLLKRCLNDS  515 (865)
T ss_pred             cCCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc------------c-----ccHHHHHHHHhcCc
Confidence            2210    0011234555555555566677777777777765221111            1     11123455666777


Q ss_pred             CHHHHHHHHHHHHHhc
Q 011316          437 NTEIYEKAVKILETYW  452 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~~  452 (488)
                      +.+++++|...+..+-
T Consensus       516 DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  516 DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            7777777777776655

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.0032  Score=59.18  Aligned_cols=405  Identities=12%  Similarity=0.087  Sum_probs=204.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--------------HHHHHHcC---CHHHHHHhhcCCCChhHHHHHHHH
Q 011316           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPP--------------INEVIQSG---VVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--------------~~~~~~~~---~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +.-.|+..++..|..|+..+..++.+. ...              ...++...   .-..|+-.|..+.++.+..+++.|
T Consensus        52 ~~l~lkd~~~~~ra~alqv~~~~l~gs-k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kc  130 (728)
T KOG4535|consen   52 MTLTLKDPSPKTRACALQVLSAILEGS-KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKC  130 (728)
T ss_pred             eEEecCCCChhHHHHHHHHHHHHHHhh-HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            444567888999999999998887653 111              11122221   223344455555557888999999


Q ss_pred             HHHhcCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC------------------
Q 011316           98 LTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG------------------  158 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~------------------  158 (488)
                      |.++....|-.+-.+- -..++..+..++++.++.++..++..++.+...+...-+.....|                  
T Consensus       131 la~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~  210 (728)
T KOG4535|consen  131 LANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDW  210 (728)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHH
Confidence            9999987776655442 223455566678889999999999999888654321111100000                  


Q ss_pred             -----ChHHHHHHhccc---------------------------------------ccHhHHHHHHHHHHHhhcCCCCCC
Q 011316          159 -----ALMPLLAQFNEH---------------------------------------AKLSMLRNATWTLSNFCRGKPQPL  194 (488)
Q Consensus       159 -----~i~~l~~~l~~~---------------------------------------~~~~v~~~a~~~L~~l~~~~~~~~  194 (488)
                           .-+.+.+.-..+                                       ....++-.+...|..++... ...
T Consensus       211 ~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~  289 (728)
T KOG4535|consen  211 WKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMT  289 (728)
T ss_pred             HHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHH
Confidence                 000000000000                                       00112222222222222211 000


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-----CchhHHHHHHhCCHHHHHH-------hcCCCCcchHhHH
Q 011316          195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-----TNDKIQAVIEAGVCPRLVE-------LLRHPSPSVLIPA  262 (488)
Q Consensus       195 ~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~-----~~~~~~~~~~~~~l~~L~~-------lL~~~~~~v~~~a  262 (488)
                      ......+...+...+...++.++.++..++..+...     .++..+.-...+.+-.+.-       .-++..+..+..+
T Consensus       290 ~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~  369 (728)
T KOG4535|consen  290 QAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASA  369 (728)
T ss_pred             HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHH
Confidence            000111122222223355778888887777766532     1111111111121111111       1122345667777


Q ss_pred             HHHHhHhhcCCchhhHHHhhCCChHHHHHHh----cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316          263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      |..+.++....-+..    ..|--.....++    ++. +.-++.+|.++..-+.-+..-......-.+....+...+.+
T Consensus       370 Cdals~i~~~~f~~l----pn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d  444 (728)
T KOG4535|consen  370 CDALSSILPEAFSNL----PNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED  444 (728)
T ss_pred             HHHHhhcCchhhcCC----CCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh
Confidence            888877765321110    111111111111    333 55577788887776666533222223333466677777777


Q ss_pred             CChhHHHHHHHHHHHhccC---C--CHH-HHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011316          339 AEFEIKKEAAWAISNATSG---G--SNE-QIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGN  409 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~---~--~~~-~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~  409 (488)
                      +....|.++.|+++|++..   +  +++ ....+.. -.+..+.+.-.   ..+.+++.++.++|+++...-+..++.. 
T Consensus       445 ~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~-  522 (728)
T KOG4535|consen  445 KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT-  522 (728)
T ss_pred             HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc-
Confidence            7888999999999999742   1  111 1122111 12333333222   3456899999999999987655333221 


Q ss_pred             CCccchHHHHHHhhccHHHH-HHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011316          410 TGGVNLFAQAIDDAEGLEKI-ENLQSHDNTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       410 ~~~~~~~~~~l~~~g~~~~l-~~l~~~~~~~v~~~a~~~l~~~~~~~~  456 (488)
                            +...++  |.+.++ ....-..+-.|+=-|-..+.++|..+-
T Consensus       523 ------~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a  562 (728)
T KOG4535|consen  523 ------FAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA  562 (728)
T ss_pred             ------HHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence                  233222  222222 222344467788888888999887643

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0016  Score=64.53  Aligned_cols=327  Identities=13%  Similarity=0.105  Sum_probs=168.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      ..+-+.|+++++-+|-..++.|+++=.   .+    ++ ...+|.+...|.+.+ .-+|..|..++..+-...    +.+
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckLkE---~E----Ll-epl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L  168 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKLKE---PE----LL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHL  168 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhcCc---HH----Hh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhh
Confidence            455677788999999888888888422   12    22 357888999999999 899999999988887621    111


Q ss_pred             HhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCC----------------CchhHHHHH-------------hcCChHH
Q 011316          113 IDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGD----------------SPKCRDLVL-------------SNGALMP  162 (488)
Q Consensus       113 ~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~----------------~~~~~~~~~-------------~~~~i~~  162 (488)
                      +. .+-+.+-.+| ...++..+++|...|...-..                ++..+-.++             +...+..
T Consensus       169 ~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~  247 (948)
T KOG1058|consen  169 IP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRC  247 (948)
T ss_pred             cC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHH
Confidence            11 2222223333 335666666666555433110                000000000             0011222


Q ss_pred             HHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHh
Q 011316          163 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA  241 (488)
Q Consensus       163 l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  241 (488)
                      +..+| .++++.++..|+.+|..++..+     .........++.++.. .|..+..-.+.-|..+....    +.+++ 
T Consensus       248 i~~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~-  316 (948)
T KOG1058|consen  248 IYNLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQ-  316 (948)
T ss_pred             HHHHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHH-
Confidence            22233 2223333333333333332221     1111222223333221 12222222222222222111    11222 


Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHHhcC
Q 011316          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      |.+-.++..|.+++-+++..++.+...++....  ...     ++..|-+-+      .+..+...|.....++..++..
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence            455566777888999999999988887776432  111     112222211      1222456788889999999887


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHH
Q 011316          316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGL  394 (488)
Q Consensus       316 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~al~~L  394 (488)
                      .++..     ..+++.|++.+.+.++......+..+......- +..+.     ..++.|.+-+.. ...++...++|.+
T Consensus       390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~  458 (948)
T KOG1058|consen  390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLRA-----SIIEKLLETFPQIRSSKICRGALWIL  458 (948)
T ss_pred             ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHHH-----HHHHHHHHhhhhhcccccchhHHHHH
Confidence            67643     347889999999887765444444444443322 12222     234555554432 4556777788888


Q ss_pred             HHHHHhhh
Q 011316          395 ENILKAGE  402 (488)
Q Consensus       395 ~~l~~~~~  402 (488)
                      +..+....
T Consensus       459 GeYce~~~  466 (948)
T KOG1058|consen  459 GEYCEGLS  466 (948)
T ss_pred             HHHHhhhH
Confidence            77665443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.0028  Score=63.12  Aligned_cols=140  Identities=12%  Similarity=0.097  Sum_probs=83.1

Q ss_pred             chHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316          200 PALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       200 ~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      ..+..|..+|+. +.-+-..+...++..+....++...     .++..|...+.+.  +...-+.++|.-+....+.   
T Consensus       391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~---  460 (865)
T KOG1078|consen  391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK---  460 (865)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---
Confidence            344455555543 2344555666666666654444333     3344455544432  2334445555555443321   


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      .......+..+.....-. +..+|..|..++.++...++..     ...+...|.+++.+.|.++|..|..+|.++.
T Consensus       461 a~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  461 APNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CCCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            112334455555555445 7789999999999998643332     2245667888999999999999999999987

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.69  E-value=0.019  Score=53.42  Aligned_cols=225  Identities=11%  Similarity=0.113  Sum_probs=156.8

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-----HHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-----IQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .+.+..++..+..-+-+.+..+..+..++.....+.     .+.+.+.  .++..|+..-.  ++++...+-..|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence            578888888888889999999999999988654322     2223222  33444444433  55677777777777776


Q ss_pred             CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhcCChhHHHHHH
Q 011316          272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                       .+...+.++....+..+.+.++.+ +.++...|..++..+...++.....++..   .++.....++.+++.-+|..++
T Consensus       153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence             456677888888899999999999 99999999999999887667766666653   3577888889999999999999


Q ss_pred             HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--c
Q 011316          349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--E  424 (488)
Q Consensus       349 ~aL~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g  424 (488)
                      ..|+.+......  -..+++.+..-+..++.+|+++...++-.|..++.-++....+..         ++...+...  .
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~---------~I~~iL~~Nr~k  301 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP---------PIVDILIKNREK  301 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH---------HHHHHHHHTHHH
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh---------HHHHHHHHHHHH
Confidence            999999865422  234555566779999999999999999999988887766544332         256655533  3


Q ss_pred             cHHHHHHhhcCC
Q 011316          425 GLEKIENLQSHD  436 (488)
Q Consensus       425 ~~~~l~~l~~~~  436 (488)
                      .++.+.++..+.
T Consensus       302 Ll~fl~~f~~~~  313 (335)
T PF08569_consen  302 LLRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHHTTTTT-
T ss_pred             HHHHHHhCCCCC
Confidence            355555554443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.60  E-value=0.16  Score=54.93  Aligned_cols=394  Identities=10%  Similarity=0.016  Sum_probs=199.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      -+..++..|.++...+|-.|+++|..+...++.-..+..+..    .+-.-+.++. ..||+.|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            455688888888899999999999999886632223333333    3333445666 79999999999987775666555


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..     .-+..-..++...+|..++..+..+|...|.+...      ...+.+++.  .++...++.-++.++.++--
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            443     44555556678899999999999999888875332      233444443  33334488889999988876


Q ss_pred             CCCCC--ChhhhhchHHHHHHh-------hccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----
Q 011316          189 GKPQP--LFEQTRPALPALERL-------IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----  251 (488)
Q Consensus       189 ~~~~~--~~~~~~~~~~~L~~l-------l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----  251 (488)
                      .+...  .......-++..+..       .....+.+....+..=....  .....+.+...   -.+..+..++     
T Consensus       961 ~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ 1038 (1692)
T KOG1020|consen  961 TPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKIS 1038 (1692)
T ss_pred             cCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            65221  111111222222211       12222222222221111110  00111111111   1112222221     


Q ss_pred             -------CCCCcch-HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc---CC
Q 011316          252 -------RHPSPSV-LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA---GN  316 (488)
Q Consensus       252 -------~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~---~~  316 (488)
                             ..+...+ ....+.+|..++...|...    ....+..|...|.+.    ....+-...+.++-...-   ..
T Consensus      1039 ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Ll----t~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ 1114 (1692)
T KOG1020|consen 1039 EVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLL----TKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP 1114 (1692)
T ss_pred             hhhhHhhhcccchhHHHHHHHHHHHHHhcCchhc----cHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc
Confidence                   1122223 3345666666666555332    213344455555443    233333444444433322   21


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC--CCHHHHHHHHHCCChHHHHhhcCC--CC-----HHHH
Q 011316          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG--GSNEQIKFLVSQGCIKPLCDLLNC--PD-----PRIV  387 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~~~~L~~ll~~--~~-----~~v~  387 (488)
                      ++..-.-    +=..|+..+..........|..+++.++..  .+......... -....|-.+=++  ++     ....
T Consensus      1115 sesfL~s----LEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~-~~~k~le~~k~s~~en~~~~~~p~l 1189 (1692)
T KOG1020|consen 1115 SESFLAS----LEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFS-CYLKLLEVIKSSNNENADIVNFPKL 1189 (1692)
T ss_pred             hHHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHhccccccchhhhHHH
Confidence            2211111    223455555555566667777777777753  12222222111 111111111111  11     2344


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      ...+..++-++.+.................. ....+.+..|..+..+.+.+++.+|..-+..++
T Consensus      1190 ~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1190 QRSIFTLGLLSRYFDFPKPSNDGKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred             HHHHHHHHHHHHhccCCCccCCCccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            5666777777665544332221111111122 233456677777777778888888888776654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.066  Score=50.22  Aligned_cols=259  Identities=11%  Similarity=0.078  Sum_probs=179.6

Q ss_pred             HhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCC--------ChhhhhchHHHHHHhh
Q 011316          140 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQP--------LFEQTRPALPALERLI  209 (488)
Q Consensus       140 L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~--------~~~~~~~~~~~L~~ll  209 (488)
                      +.-++. .|..-..+++.++++.++.+| .+.+.++....+..+..++..+  +..        ......++++.|++-+
T Consensus       108 mhvlAt-~PdLYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv  185 (536)
T KOG2734|consen  108 MHVLAT-MPDLYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV  185 (536)
T ss_pred             HHhhhc-ChHHHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH
Confidence            333443 355667888999999999999 8888899999999999998765  111        1123367777888777


Q ss_pred             ccCCh------hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316          210 HSNDD------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       210 ~~~~~------~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      ..-|.      .-....+..+-|+..-.+.....+++.|.+..|+.-+..  +.......|..+++-+...+.+.+...-
T Consensus       186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~  265 (536)
T KOG2734|consen  186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG  265 (536)
T ss_pred             HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence            64333      335667788888888887777888888888888875543  3455677788888888887776666666


Q ss_pred             hCCChHHHHHHhc-----c---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011316          282 NHQALPCLLDLLT-----Q---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  353 (488)
Q Consensus       282 ~~~~~~~L~~lL~-----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~  353 (488)
                      ..+++..+++-+.     +   ....+.-.....+||.+... +.++..++....+..+.-+++. ....+..++.+|-.
T Consensus       266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~  343 (536)
T KOG2734|consen  266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDH  343 (536)
T ss_pred             CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence            7788888877662     2   11344556677777777666 6777777777777766555555 45677889999988


Q ss_pred             hccCCC-HHHHHHHHHCCChHHHHhhcC-C---------CCHHHHHHHHHHHHHHHHhhh
Q 011316          354 ATSGGS-NEQIKFLVSQGCIKPLCDLLN-C---------PDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       354 l~~~~~-~~~~~~l~~~~~~~~L~~ll~-~---------~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ...+.. .+.+..+.+..++..+..++- .         ...+.-++.+..|..++....
T Consensus       344 am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~  403 (536)
T KOG2734|consen  344 AMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD  403 (536)
T ss_pred             HHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence            877542 355666777777666666432 1         223566778888888877654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.55  E-value=0.0011  Score=66.99  Aligned_cols=189  Identities=20%  Similarity=0.165  Sum_probs=133.5

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH--------HHh----cCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL--------VLS----NGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~--------~~~----~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                      ...++.+|+.  +++-..+..++.-+..+++.+...        +.+    ...++.+++.. ...+...+.....+|++
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence            4455566644  455555666666666655433221        111    23567777777 45566778888899999


Q ss_pred             hhcCCCCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhH
Q 011316          186 FCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIP  261 (488)
Q Consensus       186 l~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~  261 (488)
                      ...+-|..... .....+|.|++.+.-+|..++..++.++..+....+.....-++ -+++.++.+-.+++   ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence            88865543332 34678899999999999999999999999887655444333332 56777777766654   579999


Q ss_pred             HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      |+.+|..+.+.-|...-......++..+.+.|+++ ..-+|++|..+=.+
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence            99999999997776666666778899999999999 88999999876443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.54  E-value=0.00051  Score=51.01  Aligned_cols=68  Identities=16%  Similarity=0.336  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316           90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSN  157 (488)
Q Consensus        90 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  157 (488)
                      .+...++++++++..++...+.+.+.|+++.++....  ..+|-+++.|++++.+++.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567789999999999999999999999999999754  4789999999999999999999887776553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.014  Score=61.26  Aligned_cols=243  Identities=12%  Similarity=0.099  Sum_probs=153.2

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHH
Q 011316           78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV  154 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  154 (488)
                      +.....+.++..+|..+.++|..++.. +.......+  ..+.+.|..-+++.....+...+.+|..|....+ +....+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444443489999999999999984 322221111  1344566666666777788888888888876554 222222


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh--cCC---C-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK---P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~--~~~---~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ..  .++.++-.+ ++.+...++.+..+|..++  ...   . .......+.+++.+...+-.....+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            21  344444444 7778888999999998888  222   1 1224455666666666654444444444355555555


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  308 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~  308 (488)
                      ....+......-.++++.+...|.+.+++++..|+..+..++...+...-......+++.+..+++.. ...+|...-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            43322222222235667777778899999999999999999987776544433445788888888776 78888888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 011316          309 ISNITA-GNVNQIQAIIE  325 (488)
Q Consensus       309 L~nl~~-~~~~~~~~l~~  325 (488)
                      +-.+++ ...+..+.+..
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888877 33555555544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.53  E-value=0.025  Score=55.42  Aligned_cols=238  Identities=15%  Similarity=0.133  Sum_probs=150.9

Q ss_pred             ccHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-----CChhHHHHH
Q 011316           30 ESLPAMVAGV----------WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEA   94 (488)
Q Consensus        30 ~~i~~l~~~L----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~v~~~a   94 (488)
                      +++..|.+.-          .+.++.+..+|+++|+|++-.. ....+.+.+.|..+.+++.|+..     + .++..-.
T Consensus        22 ~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~   99 (446)
T PF10165_consen   22 EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLD   99 (446)
T ss_pred             HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHH
Confidence            6666666665          2577899999999999988765 56677778999999999999876     4 7888999


Q ss_pred             HHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCC-----------------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316           95 AWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      .+.+.-++...++.+..+++. +++..+...+..                 .+......++.++.|+..+.+.... -..
T Consensus       100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~  178 (446)
T PF10165_consen  100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEF  178 (446)
T ss_pred             HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhh
Confidence            999988888788888887755 677777765532                 1345566788888998766544222 012


Q ss_pred             cCChHHHHHHhccc--------ccHhHHHHHHHHHHHhhcCC------------CCCChhhhhchHHHHHHhhc----cC
Q 011316          157 NGALMPLLAQFNEH--------AKLSMLRNATWTLSNFCRGK------------PQPLFEQTRPALPALERLIH----SN  212 (488)
Q Consensus       157 ~~~i~~l~~~l~~~--------~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~~~~~~~L~~ll~----~~  212 (488)
                      ...++.++..+...        .......+++.+|.++--..            ...........+..++.+|.    ..
T Consensus       179 ~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~  258 (446)
T PF10165_consen  179 SPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY  258 (446)
T ss_pred             hHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc
Confidence            23344444443211        23356677888888772111            00011122345566666654    21


Q ss_pred             ----ChhHHHHHHHHHHHhccCCchhHHHHHHhC-----------------CHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          213 ----DDEVLTDACWALSYLSDGTNDKIQAVIEAG-----------------VCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       213 ----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-----------------~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                          -.......+.+|..++.......+ .++..                 +-..|++++.++.+.++..+...+..+|.
T Consensus       259 ~~~~l~~~l~PlL~lL~~~~~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  259 EALKLDELLTPLLTLLTRLARAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             CcccchhhHhhHHHHHHHHHHhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence                135677788888888877644333 33333                 34455566655556666666666666554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.52  E-value=0.017  Score=56.97  Aligned_cols=295  Identities=12%  Similarity=0.099  Sum_probs=153.8

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316           77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      .++..-+ ++ +..+..|+..+......-|+..+..     +..++.++++++..+|..|++.|-.+|.++++....+  
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--   97 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--   97 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence            3444444 34 7899999999999999888887754     7899999999999999999999999999887654544  


Q ss_pred             cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhc-cCCc
Q 011316          157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLS-DGTN  232 (488)
Q Consensus       157 ~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~-~~~~  232 (488)
                         ...|+++| .+.++.-...+-.+|..+...+       ..+.+..+...+.   +++..+++.++..|..-. .-..
T Consensus        98 ---aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   98 ---ADVLVQLL-QTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             ---HHHHHHHT-T---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             ---HHHHHHHH-hcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence               45788888 6666666666667776665543       1344555555554   578889999998885422 2111


Q ss_pred             hhHH--HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----CchhhHHHhhCCChHHHHHHh------cccchhh
Q 011316          233 DKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDMQTQCIINHQALPCLLDLL------TQNYKKS  300 (488)
Q Consensus       233 ~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~~L~~lL------~~~~~~~  300 (488)
                      +...  .-.+.-++..+.+.|.+-..+--...+.+|..+-..    .....+.+     ++.+....      ... +++
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e  240 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE  240 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence            1111  112223445566667654433344455556555541    22222222     23333222      111 222


Q ss_pred             HHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH
Q 011316          301 IKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP  374 (488)
Q Consensus       301 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~  374 (488)
                      .-...+.++..    ++.  .+......+.+ .++|.+-.+    ..+.+..-+.+++.++..........+++ .++..
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence            22222222222    222  23444444444 477765555    45677788999999987764332333321 22333


Q ss_pred             HHhhcCCC--CH----HHHHHHHHHHHHHHHhhhh
Q 011316          375 LCDLLNCP--DP----RIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       375 L~~ll~~~--~~----~v~~~al~~L~~l~~~~~~  403 (488)
                      |...+-..  .+    ..++..+.+++.+....+.
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            33333322  22    3567777778877765543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.51  E-value=0.015  Score=50.73  Aligned_cols=256  Identities=18%  Similarity=0.230  Sum_probs=153.8

Q ss_pred             HHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316           75 VPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        75 i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      +..+.+.|...+. ..-+..|+..|.++...           +.+..+.+...+++...+...+.+|+.....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            3444455544321 23455666666666651           2256666666666666777777777765421       


Q ss_pred             HHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316          154 VLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       154 ~~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                          ..++.++..+. .+..+-++..|..+|..+...          ..++.+-++.+++-..+++.+..++..+-..+.
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                25677777764 234566777888888887632          456666677766667777766666665542211


Q ss_pred             hhH----HHH--------HHhCCHHHHHHhcCC-CCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccch
Q 011316          233 DKI----QAV--------IEAGVCPRLVELLRH-PSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK  298 (488)
Q Consensus       233 ~~~----~~~--------~~~~~l~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  298 (488)
                      ...    ...        ...+-+..+-..+.+ ..+ --|..+++.|.|+-.  +         ..+..+.+-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence            000    000        000112222222222 111 223455555555422  1         2244566667777 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH
Q 011316          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  376 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~  376 (488)
                      .-.|.+++++++.+-+.  .         .++.|.+.|.+.  ++-||..|+.||+.++.   ++         .++.|.
T Consensus       201 alfrhEvAfVfGQl~s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence            88999999999998542  2         577777777664  78899999999999974   23         466777


Q ss_pred             hhcCCCCHHHHHHHHHHHHHH
Q 011316          377 DLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       377 ~ll~~~~~~v~~~al~~L~~l  397 (488)
                      +.++++++-+++.|..+|..+
T Consensus       258 e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHH
Confidence            888988888888887777644

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.49  E-value=0.00022  Score=47.14  Aligned_cols=55  Identities=31%  Similarity=0.511  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      +.++..++++|++++...++..+... ..+++.|..+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999888776666544 48899999999999999999999999875

...

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.48  E-value=0.0027  Score=47.27  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      |..++.+|..++..-......++-  .+++++...+.++++.+|..|+++|.++.+.....           ....|.  
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~--   67 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFN--   67 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--
Confidence            566777887776655444444433  48999999999999999999999999998776532           233333  


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          424 EGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       424 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      ..++.|-++..++++.|+..| .++.++.
T Consensus        68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   68 EIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            347889999999999998776 5555543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.46  E-value=0.014  Score=54.41  Aligned_cols=203  Identities=12%  Similarity=0.082  Sum_probs=142.6

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-----hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      +.+...+.+..|+..|..-+-+.|..+..+.+++.+.....     ...+ .....+.+..++..-.++++-..+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl-~~~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYL-ERHRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHH-HT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHH-HhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence            44666789999999998888889999999999998864433     2222 22323334444433335566677777788


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHH
Q 011316          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIV  387 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~  387 (488)
                      .++.. +...+.++....+..+++.++.++.++...|..++..+.... +.....+...   ..+.....++.+++.-++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            77766 667778888889999999999999999999999999987654 3343333333   346778889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316          388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      .+++..|+.++........         ....+.+..-++.+..++.+++..++-.|-.+..-
T Consensus       227 rqslkLL~ellldr~n~~v---------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv  280 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNV---------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV  280 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHH---------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHH---------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence            9999999999866554332         34555566668888888999998898887776543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.46  E-value=0.023  Score=57.85  Aligned_cols=238  Identities=15%  Similarity=0.102  Sum_probs=154.3

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011316           77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVL  155 (488)
Q Consensus        77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  155 (488)
                      .+...+.....|..-..+.+.+...+...+.+...+ . .++...+..+. +..+-++..|+++++..+.... +..  .
T Consensus       453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~  527 (1005)
T KOG2274|consen  453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--L  527 (1005)
T ss_pred             HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--c
Confidence            333444444447777788888887666322222211 1 12334444443 4667788888888888873322 111  1


Q ss_pred             hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCch
Q 011316          156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND  233 (488)
Q Consensus       156 ~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~  233 (488)
                      ..+++..|+++. ...+.++......+|+..+..++.........+.|..+.++.  ++|+.+...+-.++..++.....
T Consensus       528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~  606 (1005)
T KOG2274|consen  528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN  606 (1005)
T ss_pred             chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence            123455666666 566778888899999999999887777777888888887764  46787777777777777653221


Q ss_pred             hHHHHHHhCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          234 KIQAVIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       234 ~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      . ..+. ...+|.+++.|..+.    +.....++.+|..+.+..+.-.-..+-.-+++.+.++.-+..+..+-..+.-+|
T Consensus       607 ~-g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL  684 (1005)
T KOG2274|consen  607 Y-GPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL  684 (1005)
T ss_pred             h-cchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence            1 2122 267899999998765    566677888888888766544333444456777877665554778888888899


Q ss_pred             HHHhcCCHHHHHH
Q 011316          310 SNITAGNVNQIQA  322 (488)
Q Consensus       310 ~nl~~~~~~~~~~  322 (488)
                      ..+.....++...
T Consensus       685 ra~Is~~~eq~~t  697 (1005)
T KOG2274|consen  685 RALISVTLEQLLT  697 (1005)
T ss_pred             HHHHhcCHHHHHh
Confidence            8888765555443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.018  Score=50.13  Aligned_cols=254  Identities=17%  Similarity=0.193  Sum_probs=156.0

Q ss_pred             HHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           33 PAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        33 ~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ..+.+.|..  ....-+.+|+..|+++....            .+..+.+...+++ .-.+...+.+|+....       
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-------   65 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-------   65 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-------
Confidence            344445543  34466777888888765432            2555556655554 5666777778777665       


Q ss_pred             HHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                          ...++.|+..+..  ..+-+|..|..+|+++. + +.         ..+.+-+.. +++-..++..+..++..+-.
T Consensus        66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~  129 (289)
T KOG0567|consen   66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEW  129 (289)
T ss_pred             ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHH
Confidence                3458888887765  56788889999999885 2 22         233344444 55556666666666666543


Q ss_pred             CCCCC------Chh-------hhhchHHHHHHhhccCC-hh-HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011316          189 GKPQP------LFE-------QTRPALPALERLIHSND-DE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  253 (488)
Q Consensus       189 ~~~~~------~~~-------~~~~~~~~L~~ll~~~~-~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  253 (488)
                      .....      ...       ...+-+..+-..+.+.+ +. -+..++..|+|+...           ..+..+..-+..
T Consensus       130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E-----------eaI~al~~~l~~  198 (289)
T KOG0567|consen  130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE-----------EAINALIDGLAD  198 (289)
T ss_pred             hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH-----------HHHHHHHHhccc
Confidence            22000      000       11222333443343332 22 245566666665321           224555666667


Q ss_pred             CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 011316          254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL  332 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L  332 (488)
                      ++.-.|..+..+++.+-.  +         ..++.+.+.|. ..+++.+|.+|+.+|+.++.  ++         .++.|
T Consensus       199 ~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL  256 (289)
T KOG0567|consen  199 DSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVL  256 (289)
T ss_pred             chHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHH
Confidence            777889999999998854  2         23566666553 34478999999999998864  33         56777


Q ss_pred             HHHHhcCChhHHHHHHHHHHHhc
Q 011316          333 VNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       333 ~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      .+.+.+.++-|++.+..+|.-.-
T Consensus       257 ~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  257 KEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHH
Confidence            88888888888888887776554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.39  E-value=0.0071  Score=51.27  Aligned_cols=93  Identities=24%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      ++.++..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|..|.....-..    +..++..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence            578899999999999977665444     667899999999999999999999999987432221    22344778888


Q ss_pred             hcccchhhHHHHHHHHHHHHhcC
Q 011316          293 LTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      +.++ ++.+|..|...+..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999875

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.38  E-value=0.0064  Score=49.18  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             hHHHHHhcCChHHHHHHhccccc-----HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHH
Q 011316          150 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACW  222 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~  222 (488)
                      +...++..+++..|++++..+..     .++...++.++..|.......+......++..++.++...  +..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34567788999999999955442     4778889999999988875666667778889999888754  6899999999


Q ss_pred             HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316          223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      .|-+++.+++.....+.+.=-++.|+.+|...+++++..++..+..+....++.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            999999988876676666566899999999999999999999888887755543

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.37  E-value=0.0084  Score=48.49  Aligned_cols=130  Identities=13%  Similarity=0.107  Sum_probs=102.0

Q ss_pred             HHHHHhCCHHHHHHhcCCCC------cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHH
Q 011316          236 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT  308 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~  308 (488)
                      ..+++.+++..|++++.++.      .++...++.++..|..+.. ..-..++..++..+......+. +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45777899999999998755      2566678888888877643 2233455677888888887653 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011316          309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL  366 (488)
Q Consensus       309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  366 (488)
                      |-+++..++.....+.+.=-++.|+..++..+.+++.+|...+..+...++...++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999998777777776666799999999999999999999999999888776655543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.34  E-value=0.00063  Score=41.66  Aligned_cols=39  Identities=38%  Similarity=0.753  Sum_probs=35.8

Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011316          106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~  144 (488)
                      ++.+..+.+.|+++.|++++.+++++++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.33  E-value=0.015  Score=49.21  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=75.1

Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN  334 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~  334 (488)
                      ++.+|..++-+++.++...+....     ..++.+...|+++ ++.||+.|+.++..|...+.-.    .+..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence            467899999999999987765444     4678899999999 9999999999999998742211    11224477788


Q ss_pred             HHhcCChhHHHHHHHHHHHhccC
Q 011316          335 LLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       335 ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                      ++.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999876

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.019  Score=55.37  Aligned_cols=208  Identities=16%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhh
Q 011316          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  197 (488)
Q Consensus       118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  197 (488)
                      .+.+..++..++.-.-+.|...++-+.-+....       .++..+...-.......+.+...-.+.-+..+.       
T Consensus       448 ye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~-------eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr-------  513 (926)
T COG5116         448 YEKLKELLKNDRALLGEAAVYGMGLLMLGTWSV-------EAIEDMRTYAGETQHERIKRGLGIGFALILYGR-------  513 (926)
T ss_pred             HHHHHHHHhcchhhhhhhhhhccceeeecCCCH-------HHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh-------
Confidence            456666666666666666655555443322210       023333333323333344332222222111111       


Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchh
Q 011316          198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      ...+-..+.+++.+.++-++.....++.---....+       .+++..++.. ..+.+.+||++|.-+|+-+|...+  
T Consensus       514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--  584 (926)
T COG5116         514 QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--  584 (926)
T ss_pred             HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCc--
Confidence            112233566777777777776665555432212111       2567777777 567788999999999999888544  


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                             ..+...+++|..+.++.||...+.+|+-.+.+.....       .+..|-.++.+...-||+.|+.+++-+..
T Consensus       585 -------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~  650 (926)
T COG5116         585 -------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILM  650 (926)
T ss_pred             -------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence                   4556677777777689999999999998877533221       35555566677777899999999988876


Q ss_pred             CCCHHH
Q 011316          357 GGSNEQ  362 (488)
Q Consensus       357 ~~~~~~  362 (488)
                      .++++.
T Consensus       651 Q~n~~L  656 (926)
T COG5116         651 QCNPEL  656 (926)
T ss_pred             hcCccc
Confidence            665443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.30  E-value=0.012  Score=54.41  Aligned_cols=200  Identities=16%  Similarity=0.202  Sum_probs=124.3

Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHH
Q 011316          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQI  320 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~  320 (488)
                      ...+..+.+.....|..++..+.++..... ....+.  ...+++.+.+.++.+ ..+-+..|+.+++-++.  +.....
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence            334445555668899999999888876432 112221  224677788888777 54556667676666654  222334


Q ss_pred             HHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC--CCHHHHHHHHHCCChHHH--HhhcC----------CCCH
Q 011316          321 QAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG--GSNEQIKFLVSQGCIKPL--CDLLN----------CPDP  384 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~~~~L--~~ll~----------~~~~  384 (488)
                      ..+++ .+.|.|.+.+.++  ...+|..++.+|+-++..  .+.+....+.+  .++.+  ....+          .+++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            45554 3788899998876  345666777677666543  22333321111  23311  11122          1235


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 011316          385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL  461 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  461 (488)
                      .+...|+.+..-++...+...          +...+.+  .++.|..++.+++.+|+..|...|.-+|+...+.+++
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~----------~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~  265 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSK----------LEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELARDHEED  265 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHH----------HHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            788999999888886655422          2333332  3889999999999999999999999998876655444

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.26  E-value=0.03  Score=51.89  Aligned_cols=197  Identities=13%  Similarity=0.118  Sum_probs=125.4

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC--Cchhh
Q 011316          202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQT  277 (488)
Q Consensus       202 ~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~  277 (488)
                      +...+..+.......|+.++..+.++.....- .+.+.+  ..++..+.+.++.+..+-+..|+.+++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            34445555666788999999999988754321 122221  24677788888887766677788877777664  22344


Q ss_pred             HHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHH--HHhc----------CCh
Q 011316          278 QCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVN--LLLN----------AEF  341 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~--ll~~----------~~~  341 (488)
                      ..+++ .+.+.|.+++.++. ...+|..++.+|+-++.   ...+......+  .+..+..  ..+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44554 57778888887652 34566666666665543   33443332222  2332211  1221          134


Q ss_pred             hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316          342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      .+...|+.+.+-++...+........+ ..++.|..+|++++.+||..|-++|.-+++....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            688888888888876665533444333 4689999999999999999999999988877664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.046  Score=54.61  Aligned_cols=298  Identities=15%  Similarity=0.087  Sum_probs=167.7

Q ss_pred             HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C---CChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCHH
Q 011316           49 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D---DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVP  119 (488)
Q Consensus        49 ~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~---~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~  119 (488)
                      .|+..+..+.++.+..+.     .|.++.+...|..    +   +++.-.+.|++.++++..  ..+....-+++.=+++
T Consensus       389 aal~fl~~~~sKrke~Tf-----qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~  463 (970)
T COG5656         389 AALFFLIISKSKRKEETF-----QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN  463 (970)
T ss_pred             HHHHHHHHHhcccchhhh-----hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence            356666665555422222     4788888888832    1   224566778888888765  3344444455556678


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC--Chhh
Q 011316          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQ  197 (488)
Q Consensus       120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~  197 (488)
                      .++..++++.--++..|+..++.+..+   +++...-..+.+...+.+ ++++-.++..|+.++..+..+....  -...
T Consensus       464 hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sah  539 (970)
T COG5656         464 HVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAH  539 (970)
T ss_pred             HhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence            888888999999999999999999544   233333334566666777 5578889999999999888775111  1112


Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHH-hccCCchhHHHHHH---hCCHHHHHHhcCCCC------cchHhHHHHHHh
Q 011316          198 TRPALPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIE---AGVCPRLVELLRHPS------PSVLIPALRTVG  267 (488)
Q Consensus       198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~------~~v~~~a~~~L~  267 (488)
                      ..+.++.++.+-+.-+.++...++..+.. .+..-......+..   ...+.....++.+++      ++-+..|.++|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            23344444444333355555555544432 22221111111211   022233333443331      233444555554


Q ss_pred             Hhhc---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh-
Q 011316          268 NIVT---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-  341 (488)
Q Consensus       268 ~l~~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-  341 (488)
                      .+..   .  +....-.-++....|.+--++++. -.+.-.+|+..+-++.....+..  -+.-|+++.+.+++.+... 
T Consensus       620 T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~  696 (970)
T COG5656         620 TIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITA  696 (970)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchh
Confidence            4432   1  111111222345666666677777 67777888888887765422211  1223455555555555543 


Q ss_pred             hHHHHHHHHHHHhccCC
Q 011316          342 EIKKEAAWAISNATSGG  358 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~  358 (488)
                      .-...+.-++.|+...+
T Consensus       697 ~y~ee~~~al~nfityG  713 (970)
T COG5656         697 VYSEEVADALDNFITYG  713 (970)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            55678888999988766

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.063  Score=53.58  Aligned_cols=131  Identities=21%  Similarity=0.261  Sum_probs=91.8

Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      +.+-+++.+.+|-+|...+.+++.--.+..       ..+++..|+..--+..+.+||+.|.-+|+-++..+++      
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------
Confidence            445566677788888887776654333222       2356667777743333999999999999999988777      


Q ss_pred             HcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          325 EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                         .++..+++|..+ ++.||--++.+|+-.+.+.....        .+..|..+.+++..-||+.|+-++.-++.
T Consensus       589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence               456667777665 89999999999998877543222        24444455567777889889888877654

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.24  E-value=0.00099  Score=40.75  Aligned_cols=39  Identities=46%  Similarity=0.640  Sum_probs=35.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ++....+.+.|+++.|+.++.+++++++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346777889999999999999889999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=0.019  Score=57.81  Aligned_cols=238  Identities=15%  Similarity=0.083  Sum_probs=152.6

Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 011316          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLS  228 (488)
Q Consensus       151 ~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~  228 (488)
                      +...+..|+...++++. ....+..+.....+|.. +.-.     .......++.+...+++. ...-...++.++.|++
T Consensus       497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            34456677888888887 55556666667777761 1111     111123444444444432 2233567888999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC-CChHHHHHHhcccchhhHHHHHHH
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                      ..+....+.+.+...++.+-..+..+++..+..++..+.||..+..-..+.+.+. ..++.....+... ......+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            8776666668887777777777888899999999999999998766555556663 3444444455554 7777777777


Q ss_pred             HHHHHhcCCHHHHHH-HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 011316          308 TISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI  386 (488)
Q Consensus       308 ~L~nl~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v  386 (488)
                      ++..+..-....+.. .--......+..++.+.+..++...+....|+. ....+....+.+...++.+...-.......
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~  728 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGLQKLNRAPK  728 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence            777665533333332 222347788889999999999999999999954 444566666666666666655444333333


Q ss_pred             HHHHHHHHHH
Q 011316          387 VTVCLEGLEN  396 (488)
Q Consensus       387 ~~~al~~L~~  396 (488)
                      +..+..+|..
T Consensus       729 ~~~~~~~l~~  738 (748)
T KOG4151|consen  729 REDAAPCLSA  738 (748)
T ss_pred             hhhhhhHHHH
Confidence            4444444433

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.059  Score=51.30  Aligned_cols=270  Identities=14%  Similarity=0.112  Sum_probs=147.9

Q ss_pred             CCCHHHHHHhh----CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          115 HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       115 ~g~i~~L~~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      .|.+..++..+    .+++..+|..|++.|+|.+...|.- ..-...-.+..++..|.+..+.+|+-.+..+|..+....
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k-v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK-VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH-HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            34444444433    4478899999999999999884431 122222356677777767778899999999988887654


Q ss_pred             CCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH-HHHHH--hCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316          191 PQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIE--AGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       191 ~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      ...... ..-.+.-.+..+..+.+++++..+...++.++....... ..+.+  .+....++-.+.+++|.+. .||+..
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~  410 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSE  410 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHH
Confidence            322222 234455566777888999999999999888874332221 22221  1333455555666766544 456666


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH-HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK-EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      ...+.-+- .++..  .++++   +.+ ...-...+. ..-| ...+....++.......     ....++++.-+.++.
T Consensus       411 ~~~c~p~l-~rke~--~~~~q---~~l-d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~  477 (533)
T KOG2032|consen  411 LRTCYPNL-VRKEL--YHLFQ---ESL-DTDMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVRE  477 (533)
T ss_pred             HHhcCchh-HHHHH--HHHHh---hhh-HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHH
Confidence            55554221 11111  01111   122 110111111 1111 11222223333322222     122233333335555


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      .+..--.++..+-.++...+..-..+...|..+...+-++++..+.+++..+..
T Consensus       478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            555555555554444444444333456667777788889999999999887653

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.0078  Score=60.75  Aligned_cols=223  Identities=13%  Similarity=0.099  Sum_probs=142.5

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316           78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  157 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  157 (488)
                      .+..+.++. +.+|..+++.+..+.+. .+....+...+++...+..+++.++-+--+|+..+..+|...|+        
T Consensus       732 ai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------  801 (982)
T KOG4653|consen  732 AISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------  801 (982)
T ss_pred             HHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------
Confidence            344456666 78999999999999983 35566666779999999999999999999999988888865443        


Q ss_pred             CChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011316          158 GALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  234 (488)
Q Consensus       158 ~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  234 (488)
                      ..++.+...-....   .++.+-.+-.++.++..............++...+..+++++...+..++..+++++......
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            34555555331111   123444455666666655433333444566777778888888888999999999998643322


Q ss_pred             HHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhh---CCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          235 IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       235 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      ....+- .++..++.+.. +.++-+|++|+..+..+..+.....-.+..   ......+........+..+|..|+.++-
T Consensus       882 vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            221111 34455555554 356789999999999998866543332221   1222333333333325556666655544


Q ss_pred             H
Q 011316          311 N  311 (488)
Q Consensus       311 n  311 (488)
                      .
T Consensus       961 e  961 (982)
T KOG4653|consen  961 E  961 (982)
T ss_pred             H
Confidence            3

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.11  E-value=0.027  Score=53.63  Aligned_cols=222  Identities=13%  Similarity=0.147  Sum_probs=135.8

Q ss_pred             HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc
Q 011316           93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus        93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~  171 (488)
                      .|++.|-.+....+..-..+.+.+++..++..++.+-....+.  .-...-.... ++.+.....       -..+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4667777777767777788888999999999886532222221  0000000000 000000000       0000 111


Q ss_pred             cHhHHHHHHHHHHHhhc-CC---CCCChhhh-hchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011316          172 KLSMLRNATWTLSNFCR-GK---PQPLFEQT-RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV  243 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~-~~---~~~~~~~~-~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  243 (488)
                      .....+..+.++..+.. +.   ....-... ..+...|..++++.   -+.+...++.++..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            12334445555555555 22   11122233 45677777777765   3788999999999999999988898999999


Q ss_pred             HHHHHHhcC-C---CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhH-HH-HHHH----HHHHHh
Q 011316          244 CPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI-KK-EACW----TISNIT  313 (488)
Q Consensus       244 l~~L~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v-~~-~a~~----~L~nl~  313 (488)
                      ++.+++.+. .   ++.++....-.+++.+|- +....+.+.+.+.++.+++++.++..... +. ..+.    .+-.|.
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~  231 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM  231 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999988 4   355677777788888888 56677788889999999999988732211 11 2333    344566


Q ss_pred             cCCHHHHHHHHH
Q 011316          314 AGNVNQIQAIIE  325 (488)
Q Consensus       314 ~~~~~~~~~l~~  325 (488)
                      ++.+..+..+++
T Consensus       232 RH~p~Lk~~i~~  243 (379)
T PF06025_consen  232 RHHPSLKPDIID  243 (379)
T ss_pred             ccCHHHHHHHHH
Confidence            676766555554

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.0071  Score=60.71  Aligned_cols=243  Identities=14%  Similarity=0.070  Sum_probs=159.9

Q ss_pred             CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHh-hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316          105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L  183 (488)
                      ...-+...++.|+...|+++.....+..+.....+|. .+......      ....++++...+..+....-.-.++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            4455666778899999999988877888888888887 33322211      1124555555553333222334677788


Q ss_pred             HHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHhH
Q 011316          184 SNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLIP  261 (488)
Q Consensus       184 ~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~  261 (488)
                      .||+..+ ...........++.+-.++..+++..+..++..+.||..++.-....+.+. ..++.....+.........+
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            8888766 333334445566666777778899999999999999998766555555553 34555555555555666666


Q ss_pred             HHHHHhHhhcCCchhhH-HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011316          262 ALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE  340 (488)
Q Consensus       262 a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~  340 (488)
                      ++.++..++......+. ..--......+..++.+. +..++......+.|+.....+....++....++.+..+-.-..
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            66666655554443333 222346788899999999 9999999999999976666676677777777777766655544


Q ss_pred             hhHHHHHHHHHHHh
Q 011316          341 FEIKKEAAWAISNA  354 (488)
Q Consensus       341 ~~v~~~a~~aL~~l  354 (488)
                      ...++.+..+|...
T Consensus       726 a~~~~~~~~~l~~a  739 (748)
T KOG4151|consen  726 APKREDAAPCLSAA  739 (748)
T ss_pred             hhhhhhhhhHHHHH
Confidence            45555555555444

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.07  E-value=0.043  Score=48.26  Aligned_cols=187  Identities=12%  Similarity=0.154  Sum_probs=119.3

Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCC--c---chHhHHHHHHhHhhcCCchhhH
Q 011316          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~--~---~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      .+++.++.|+.-|+.--+..++....+... |.+..|++=       +..+.  +   .-...|+..+..++. .++.+.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            357778888887777666555555545544 555555433       22221  1   122245555555666 566777


Q ss_pred             HHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011316          279 CIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  353 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~  353 (488)
                      .+++.++.-.+..+|+..    .-+.+|..+.++++.+.. ++++.+..+.+.+++|..++.++.++.-.|..|...+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            888989888888888543    246788999999999998 567888889999999999999999988888999999999


Q ss_pred             hccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          354 ATSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       354 l~~~~~~~~~~~l~~~--------~~~~~L~-~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +....  ....++.+.        .++..++ .+.+++++.+.++++.+..++....
T Consensus       166 IL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  166 ILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            88643  333333221        1222222 2344667777777777776665443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.06  E-value=0.0077  Score=61.23  Aligned_cols=189  Identities=17%  Similarity=0.162  Sum_probs=128.0

Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCC---------CCCh----hhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---------QPLF----EQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~---------~~~~----~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  226 (488)
                      ...++..|   +++++-..+..++.-+..+.+         ....    .....++|.+++.+.+.....+..-+.+|.+
T Consensus       817 a~klld~L---s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLL---SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhc---CCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            34556666   234444555566655544331         1111    2236788899998887777888888888888


Q ss_pred             hccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccch--hhHH
Q 011316          227 LSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK--KSIK  302 (488)
Q Consensus       227 l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--~~v~  302 (488)
                      +..+-+..  .+..  ..++|.|++.|.-++..+|..++.++..+....+.....-++ .+++.++.+=.+..+  ..+|
T Consensus       894 Vl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  894 VLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence            88766542  2222  267888999999999999999999999888766554433322 466677666665522  6789


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316          303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      ..|..++..+.+.-|...-......++..|...|.++..-||++|..+=.+.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            9999999999983233222333445888899999998888999998765544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.06  E-value=0.064  Score=49.73  Aligned_cols=171  Identities=16%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             CCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chh
Q 011316           73 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC  150 (488)
Q Consensus        73 ~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~  150 (488)
                      +.+..|+ ..+++++ +.+|..|+.||+-.+--+.+.....     ++.+...++.++..++..|+.++..+.... ...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3444444 6678888 8999999999999988665444433     677788787789999999999999886321 111


Q ss_pred             HHHH-------HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----CChhHHHH
Q 011316          151 RDLV-------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTD  219 (488)
Q Consensus       151 ~~~~-------~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~  219 (488)
                      .+..       .....+..+.+.+ .+.+++++..++..++.|.-......   ...++..|+-+.-+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1111       1123455666666 66688999999999999887652222   23344444433322    34667777


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011316          220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      ....+-..+...... +..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            766777777666655 4455556777777766553

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.04  E-value=0.18  Score=46.74  Aligned_cols=172  Identities=15%  Similarity=0.157  Sum_probs=114.4

Q ss_pred             hchHHHHH-HhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-
Q 011316          199 RPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-  276 (488)
Q Consensus       199 ~~~~~~L~-~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-  276 (488)
                      .+.+..++ +.+++.+..++..++.+++-.+--+.+...     ..++.+...+..+++.++..|+.++..+....+.. 
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            35555444 788999999999999999998866543333     34667777776678899999999999887643211 


Q ss_pred             hHH-------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----ChhHHH
Q 011316          277 TQC-------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----EFEIKK  345 (488)
Q Consensus       277 ~~~-------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~~v~~  345 (488)
                      ...       .....+.+.+.+.+.+. +++++..|+..++.+...+.-.-    ...++..|+-..-++    +..+|+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            111       11235778888899888 88999999999998876311100    112455555555443    456777


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~  382 (488)
                      .-...+-..+... ++. +.......++.+..+.+.+
T Consensus       175 ~L~~Ffp~y~~s~-~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASSS-PEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcCC-HHH-HHHHHHHHHHHHHHHHhCc
Confidence            6666677776643 333 3444557777777777643

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.028  Score=56.95  Aligned_cols=225  Identities=12%  Similarity=0.142  Sum_probs=144.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      ...+..+.++...++..++..|..+.+... ....+...+++...+..+ ++.|+-+.-+|...+..||.-.       .
T Consensus       730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~  800 (982)
T KOG4653|consen  730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------P  800 (982)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------c
Confidence            334445556778889999999999987543 345566677888888899 8888888889999888888753       2


Q ss_pred             hchHHHHHHhhcc-C---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011316          199 RPALPALERLIHS-N---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       199 ~~~~~~L~~ll~~-~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      ..++|.+.+.-.+ .   ..+.+-.+-.++.++...-.+....... -++..++...++++...|..++..++++|....
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence            4567777764332 1   1234444456666666544443333333 566778888888888889999999999997554


Q ss_pred             hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH---HcCChHHHHHHHhcC-ChhHHHHHHHH
Q 011316          275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII---EAGIIGPLVNLLLNA-EFEIKKEAAWA  350 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~l~~L~~ll~~~-~~~v~~~a~~a  350 (488)
                      ......+. .++..++.+.+.+.+..+|+.|+..+..+..+.....-.+.   ..+....+....... +..++..|..+
T Consensus       880 ~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            33332222 35566667776665889999999999999875333222222   112333344444333 44455555555


Q ss_pred             HHHh
Q 011316          351 ISNA  354 (488)
Q Consensus       351 L~~l  354 (488)
                      +-.+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            5444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.95  E-value=0.0052  Score=45.74  Aligned_cols=67  Identities=16%  Similarity=0.242  Sum_probs=57.4

Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      .+...+.+|+|++..++.....+.+.++++.++..-  +.. +|-+|+.|.+++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-NPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            466789999999999999989999999999998865  334 8999999999999999998988776654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.94  E-value=0.029  Score=58.89  Aligned_cols=147  Identities=19%  Similarity=0.186  Sum_probs=117.4

Q ss_pred             hhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhh
Q 011316          196 EQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       196 ~~~~~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~  270 (488)
                      .....+.|.+++..++    .++.++..|.-+|+.+..-+...    .+ .-++.|+..+. +++|.+|.++.-+++.++
T Consensus       915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCCCceeeecchheccchh
Confidence            3446678888888854    57999999999999987655433    22 55788999987 689999999999999999


Q ss_pred             cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011316          271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      ...+....     .+-+.+...|++. ++.+|+.|..++++|...+-     +--.|.++.+..++.+++..++.-|-..
T Consensus       990 v~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen  990 VRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred             hhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence            87775543     4567889999999 99999999999999987522     1236889999999999999999988877


Q ss_pred             HHHhccCC
Q 011316          351 ISNATSGG  358 (488)
Q Consensus       351 L~~l~~~~  358 (488)
                      ...++..+
T Consensus      1059 F~Els~k~ 1066 (1251)
T KOG0414|consen 1059 FKELSSKG 1066 (1251)
T ss_pred             HHHhhhcc
Confidence            77777655

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.13  Score=51.28  Aligned_cols=108  Identities=20%  Similarity=0.211  Sum_probs=81.0

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      ...+.+..+++...+++..|+..++..|..+.......-+.+. .++...+..-+.+..|.||..|+.+|+.+=......
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            5567777788888889999999999999999875443323333 367777888888888999999999999986422111


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                           +..+...+..++++.++++||+.|+..+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 23467778888888779999998775554

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.039  Score=52.46  Aligned_cols=150  Identities=13%  Similarity=0.161  Sum_probs=96.3

Q ss_pred             HHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCCCHHH-HHHHH
Q 011316          290 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQ-IKFLV  367 (488)
Q Consensus       290 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~  367 (488)
                      ..-..++ +..+|..|+..|+|.+.+.|+........ .+..++.-| ...+.+|..++..+|..+........ ..++.
T Consensus       264 a~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l  341 (533)
T KOG2032|consen  264 ANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL  341 (533)
T ss_pred             HHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence            3333556 77899999999999999755544443332 455555544 44478999999999998876443222 22332


Q ss_pred             HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh--hccHHHHHHhhcCCCHHHHHHHH
Q 011316          368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKAV  445 (488)
Q Consensus       368 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~l~~l~~~~~~~v~~~a~  445 (488)
                        ++.-.+..++++.+++++..+...++.+........           ...|.+  .+....+.--+.++++.+..+..
T Consensus       342 --~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~-----------e~~Fte~v~k~~~~lllhl~d~~p~va~ACr  408 (533)
T KOG2032|consen  342 --NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW-----------EEFFTEQVKKRLAPLLLHLQDPNPYVARACR  408 (533)
T ss_pred             --hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc-----------hhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence              356667778889999999999999998887655332           233321  22223333335677888777766


Q ss_pred             HHHHHhcCC
Q 011316          446 KILETYWVE  454 (488)
Q Consensus       446 ~~l~~~~~~  454 (488)
                      ..+..+++.
T Consensus       409 ~~~~~c~p~  417 (533)
T KOG2032|consen  409 SELRTCYPN  417 (533)
T ss_pred             HHHHhcCch
Confidence            666655543

>PRK14707 hypothetical protein; Provisional

Probab=96.86  E-value=0.79  Score=51.77  Aligned_cols=420  Identities=15%  Similarity=0.109  Sum_probs=220.4

Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCchh
Q 011316           32 LPAMVAGVW--SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        32 i~~l~~~L~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +..+++..+  .++.+.+..+...... ++.+ ....+.+ ..-.|-.+++.+.. +++++.+..+...-..++. .+..
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~-~~~~-d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAAL-VASD-DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHH-hcCC-hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            444555554  3555555544444444 4333 2333333 23344455555543 4445666555554455555 5555


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH-H
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-N  185 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~-~  185 (488)
                      +..+-..| +-..++.|.. ++ +..+..+..+-..++ +.+..++.+-. ..+...++-|.+-.+..+-..+...|. .
T Consensus       241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~r  317 (2710)
T PRK14707        241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAER  317 (2710)
T ss_pred             HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence            66555445 4445555544 44 455555555555555 33444444322 223444555546667777666555554 4


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHH
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~  264 (488)
                      |..+.......-..++-..|..+-+-++..+...+...|..=...++...+. ++...+...++.+.. ++..+-..+..
T Consensus       318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~  396 (2710)
T PRK14707        318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVLNALSKWPDTPVCAAAAS  396 (2710)
T ss_pred             HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHH
Confidence            5443322222222333334444444566666666666555433334333332 233445666666654 55555555555


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      .|..-.....+..+.+ +...+.-.+.-|..-.+..+...++..|.--..++.+.++.+--.++...|-.+-+-+|..+.
T Consensus       397 ~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c  475 (2710)
T PRK14707        397 ALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC  475 (2710)
T ss_pred             HHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence            6555555455555444 444455555555443377777777777776666667766655444555555555556787888


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH-HHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL-EGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      ..++..|..-... +++..+.+.-.++...|-.+-+.++......++ ++-..+. ....            ....|...
T Consensus       476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~~------------l~~~~~~~  541 (2710)
T PRK14707        476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DELQ------------LRKAFDAH  541 (2710)
T ss_pred             HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cchh------------hhhhhhhH
Confidence            7777777665543 345566665556666776676777755433333 2233332 1111            24445555


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 011316          424 EGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGF  485 (488)
Q Consensus       424 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (488)
                      +....+..|.+.++...-..+..-|...+..           .++..=.|++|+++.--|.|
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~-----------~~~~~~~L~aq~Vs~llNaL  592 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAERLAD-----------EPQLPKDLHRQGVVIVLNAL  592 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHhhc-----------chhhHHhhhhhHHHHHHHhh
Confidence            5566677777777666655555555544321           12333456777766554444

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.80  E-value=0.0059  Score=46.72  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=57.2

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~  449 (488)
                      ++..|+++|. +.|+.+...|+.=|+.++..-+..            +..+.+.|+-+.+.+|++++|++|+..|..+++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4778888884 457778888999999999886643            777899999999999999999999999999998


Q ss_pred             Hhc
Q 011316          450 TYW  452 (488)
Q Consensus       450 ~~~  452 (488)
                      ++.
T Consensus       112 klm  114 (119)
T PF11698_consen  112 KLM  114 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.71  E-value=0.6  Score=46.42  Aligned_cols=178  Identities=15%  Similarity=0.119  Sum_probs=109.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ....++..-+ +++..+..|+..+.+....- ++..     ..++..++.++.+.+ ..||..|++.|-.+|.++++...
T Consensus        24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~-----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~   95 (556)
T PF05918_consen   24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQ-----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS   95 (556)
T ss_dssp             HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGH-----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH
T ss_pred             HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh
Confidence            3445555555 56888999999999988764 3332     246789999999999 89999999999999998888877


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~v~~~a~~~L~~l~~  188 (488)
                      .+     ...|+++|.++++.-...+-.+|..+...++.        +.+..++..+.  ..+++.+++.++..|..=..
T Consensus        96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~  162 (556)
T PF05918_consen   96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLK  162 (556)
T ss_dssp             HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence            66     58999999998877777777777777654443        24556666663  25677899999887754333


Q ss_pred             CC--CCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316          189 GK--PQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       189 ~~--~~~~--~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      .-  ....  .....-++..+.+.|.+-...=-...+.+|..+-.
T Consensus       163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            22  1111  23344555666666655333333444455555544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.70  E-value=0.75  Score=45.64  Aligned_cols=254  Identities=13%  Similarity=0.075  Sum_probs=141.3

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  121 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  121 (488)
                      ...+.|..+...|..++.... .... ..+.    .+.+.+..+..++.-..-+.+|..|+.+..+.  ...+.++.+.|
T Consensus        41 ~p~e~R~~~~~ll~~~i~~~~-~~~~-~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L  112 (464)
T PF11864_consen   41 QPSEARRAALELLIACIKRQD-SSSG-LMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL  112 (464)
T ss_pred             CCHHHHHHHHHHHHHHHHccc-cccH-HHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence            346788899999998887652 2111 1121    22333343322333334455566666533333  22567778888


Q ss_pred             HHhhCCC---------------------------CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh
Q 011316          122 VRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  174 (488)
Q Consensus       122 ~~lL~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~  174 (488)
                      ..++..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+..+..++.
T Consensus       113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~  192 (464)
T PF11864_consen  113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED  192 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence            8777420                           2223334555566665544322221112234555555654555555


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-
Q 011316          175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-  253 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-  253 (488)
                      ....++..+-.+.... .........++..|.......  +....+-.++.||+......       ..+..|..+|.+ 
T Consensus       193 di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~  262 (464)
T PF11864_consen  193 DIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSP  262 (464)
T ss_pred             HHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHccc
Confidence            5667777776665543 222233344555555553322  66677788888888654322       345667777732 


Q ss_pred             -----CCcchHhHHHHHHhHhhcCCchhhHHHhhC---CChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          254 -----PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       254 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                           .+..+.+-|+..+..+..+..+....-+..   -+++.+...++.+ ++.+-.+....+.++..
T Consensus       263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence                 234566788888888887663332222221   2677888888877 77777777777777773

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.63  E-value=0.96  Score=47.34  Aligned_cols=210  Identities=14%  Similarity=0.179  Sum_probs=126.8

Q ss_pred             hCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---cccc----HhHHHHHHH
Q 011316          114 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW  181 (488)
Q Consensus       114 ~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~v~~~a~~  181 (488)
                      +.|++..++..+.+     ...++....+..|...+.- +.+|+.+++.++++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            56889999998876     3345666666766666654 567899999999999998874   2222    456666666


Q ss_pred             HHHHhhcCCCCCCh--------h-----hhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCH
Q 011316          182 TLSNFCRGKPQPLF--------E-----QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  244 (488)
Q Consensus       182 ~L~~l~~~~~~~~~--------~-----~~~~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l  244 (488)
                      ++-.+.........        .     ....-+..+++.+.+    .++.+....+++|-+++.+..+.++.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            66555433211100        0     123345566666654    368999999999999999988887766642  2


Q ss_pred             HHHHHh--cCCCCcchHhHHHHHHhHhhcCC------chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316          245 PRLVEL--LRHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       245 ~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      ...+++  ++.....--..-+.+++.++.+-      ...+..+++.|++...+..|... -+..           ....
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~  339 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD  339 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence            222222  11111111123355666665532      23566677888888888877655 3332           1113


Q ss_pred             HHHHHHHHHcCChHHHHHHHhc
Q 011316          317 VNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      .+.....++...+|..+++|..
T Consensus       340 s~eWk~~l~~psLp~iL~lL~G  361 (802)
T PF13764_consen  340 SPEWKEFLSRPSLPYILRLLRG  361 (802)
T ss_pred             CHHHHHHhcCCcHHHHHHHHHH
Confidence            3445566666677777777654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.60  E-value=0.12  Score=49.09  Aligned_cols=173  Identities=11%  Similarity=0.115  Sum_probs=111.5

Q ss_pred             HhHHHHHHHHH-HHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011316          173 LSMLRNATWTL-SNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       173 ~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      .+-+..|+.-| .-+|.+.-..+......++..+++.+.+ .+...+..|++.|..++.+.+.+...-.+ -.+..+++.
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea  379 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA  379 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence            34455555534 4444444444555566777788888887 68889999999999999877644322111 234555555


Q ss_pred             cCCCCcchHhHHHH-HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 011316          251 LRHPSPSVLIPALR-TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGI  328 (488)
Q Consensus       251 L~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~  328 (488)
                      -.+..+.+...|.. ++..++.+.+...        +..+..++.+. +...-..++..+..+... ..+....++. .+
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di  449 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DI  449 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence            55655555555544 4445555555332        33455555555 555666666677777763 3444444443 59


Q ss_pred             hHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          329 IGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       329 l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .|.+++...+.+..||+.|..+|..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            9999999999999999999999998864

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=0.032  Score=58.51  Aligned_cols=161  Identities=20%  Similarity=0.240  Sum_probs=123.9

Q ss_pred             CCHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCc
Q 011316           73 GVVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        73 ~~i~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~  148 (488)
                      .+.|.+++.++.+   ++|++|..|.-+|+.+..-+.+....     -++.|...+. ++++.+|.++.-+++.++..-|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3677777777432   23899999999999998866665553     3789999988 6999999999999999987666


Q ss_pred             hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ...+.     ..+.+...+ .+.++.+++.|..+|.+|..++    .+...|.++.+..++.+++..++.-|=.....++
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            53222     345677777 8889999999999999998764    4566899999999999999999888887777777


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCC
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      .... .   +.  +++|-++..|.+.
T Consensus      1064 ~k~n-~---iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGN-T---IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             hccc-c---hh--hhchHHHHhhccC
Confidence            5542 1   22  5667776666664

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.58  E-value=0.19  Score=44.37  Aligned_cols=196  Identities=13%  Similarity=0.048  Sum_probs=117.9

Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHh-------cccc-hhh--HH-HHHHHHHHHHhcCCHHHHHH
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLL-------TQNY-KKS--IK-KEACWTISNITAGNVNQIQA  322 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL-------~~~~-~~~--v~-~~a~~~L~nl~~~~~~~~~~  322 (488)
                      +++.|+.|+.-|+.--...+...-.+.. .|.+..+++=+       ..+. ...  -| ..|...+..+++ +++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            4556777766666544433433333332 34444444322       1110 111  12 233334445555 4888889


Q ss_pred             HHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316          323 IIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       323 l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                      +++..+.-.|..+++..     -+.+|..++.+++.++...+++...++.+.+.++...+.++.+++-.+..|..++.++
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99988877777777654     3568999999999999999999999999999999999999999888888899999999


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      +..+.....-.+.  ..+|.....-.  -.-+..+...+++++-+...++..++.+..
T Consensus       167 L~dd~GL~yiC~t--~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  167 LLDDVGLNYICQT--AERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHSHHHHHHHTSS--HHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HcchhHHHHHhcC--HHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            8765543322111  11122222111  122344567788888777777766665543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.57  E-value=0.0055  Score=46.88  Aligned_cols=73  Identities=21%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.++|++|+.+|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4678899999655488888899999999999768877777788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.53  E-value=0.19  Score=43.49  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011316          304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  378 (488)
Q Consensus       304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l  378 (488)
                      .|...+..++++ ++.+..+++..+--.+..+|...     .+.+|..++.+++.+...++.+...++...++++...+.
T Consensus        98 naL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   98 NALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            444444455545 78888888877766777777643     567999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc----H-HHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG----L-EKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       379 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~-~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      ++.+.+.-+..|..++.+++..+.-...         .+...++--.    + +-+..+.+.+++++-..+.++.-++-
T Consensus       177 me~GSelSKtvA~fIlqKIlldD~GL~Y---------iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs  246 (293)
T KOG3036|consen  177 MESGSELSKTVATFILQKILLDDVGLYY---------ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS  246 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHhhccccHHH---------HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            9999998888999999988765543321         1222222111    1 12333456667776666665555543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.47  E-value=0.019  Score=47.40  Aligned_cols=147  Identities=18%  Similarity=0.145  Sum_probs=97.1

Q ss_pred             ChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316          285 ALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       285 ~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      -++.++..|.. +..+.+|..+.-++..+..   ...+. ....+-+.+-..+..++.+-...+..++..+... .++..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence            34556665554 3377899999999998852   11122 2222334444455555566778889999998765 45555


Q ss_pred             HHH-HHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHH
Q 011316          364 KFL-VSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE  439 (488)
Q Consensus       364 ~~l-~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~  439 (488)
                      ..+ ...|.++.+..+..  .++..+...++++|..-+....              ++.+....+++.|.++. +++++.
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--------------~r~~I~~~~~~~L~~~~~~~~~~~  144 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--------------CRTFISKNYVSWLKELYKNSKDDS  144 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--------------HHHCCHHHCHHHHHHHTTTCC-HH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--------------HHHHHHHHHHHHHHHHHccccchH
Confidence            554 46688999998888  7788888888888875544333              44455566789999998 566666


Q ss_pred             -HHHHHHHHHHH
Q 011316          440 -IYEKAVKILET  450 (488)
Q Consensus       440 -v~~~a~~~l~~  450 (488)
                       ++.+|.-.|.+
T Consensus       145 ~ir~~A~v~L~K  156 (157)
T PF11701_consen  145 EIRVLAAVGLCK  156 (157)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence             78888877765

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.37  E-value=0.17  Score=50.60  Aligned_cols=257  Identities=13%  Similarity=0.153  Sum_probs=165.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      ++..+.-.+.+.+..-..-|.+.+..    ....++...+++.|+..+.-++. .++.. .+..++.... ..+     .
T Consensus       259 fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~lt-pl~k~~k~ld-~~e-----y  327 (690)
T KOG1243|consen  259 FLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLT-PLFKLGKDLD-EEE-----Y  327 (690)
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhh-HHHHhhhhcc-ccc-----c
Confidence            34444556666665555555553332    23445566677777777665541 22222 2222333333 222     5


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  193 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  193 (488)
                      +.++++.++++++..+..+|-..+.-+-.+..+   ..+.+++..+++.+...+ .++++.++..++.++..++..-...
T Consensus       328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh
Confidence            668899999999999999998766666665543   445566777788888888 8899999999999998887643111


Q ss_pred             ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                        ......+..+..+-.+.+..++....-|++.++......   ..+.-....+...++++-..-|..+...+.......
T Consensus       404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~  478 (690)
T KOG1243|consen  404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF  478 (690)
T ss_pred             --hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence              233445555555555667888888888888887664322   122223345555677777778888888877665543


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      +.   .-+...+++.+..+.-++ +..+|..|..++..+-..
T Consensus       479 ~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  479 DQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             ch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHhh
Confidence            32   223457888888888888 888888888888766543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.37  E-value=0.3  Score=46.55  Aligned_cols=275  Identities=18%  Similarity=0.159  Sum_probs=141.3

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHhhhhCCCchhHH
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRD  152 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a-~~~L~~l~~~~~~~~~  152 (488)
                      +..++.-+.++....+|..++--|+.-+. +++++..+...|..+.+.+.+.. ++..+...+ +.++.-++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            56677777755547889898888888888 89999999999999999999955 333244444 444444444443 233


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHH
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA  223 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~al~~  223 (488)
                      .+.+......+++++.-....++.....       ..............+..+.+.+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh-------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3334444555566663000000000000       00000000000111111111110         1112223334444


Q ss_pred             HHHhc--------------cCCchhHHHHHHhCCHHHHHHhcC----CC-------C-----cchHhHHHHHHhHhhcCC
Q 011316          224 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------S-----PSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       224 L~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~-----~~v~~~a~~~L~~l~~~~  273 (488)
                      +-.++              ...+...+.+.+.|+++.++..+.    ..       .     ......++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            44332              111223344566677888888764    11       1     124456788888888776


Q ss_pred             chhhHHHhh--CCChHHHHH-Hhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------c----
Q 011316          274 DMQTQCIIN--HQALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------N----  338 (488)
Q Consensus       274 ~~~~~~~~~--~~~~~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~----  338 (488)
                      .........  .+.+..+.. .+...  ....+...+++.+.|++.++++....+...++...+..+..      .    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            665555543  223333322 22222  03344567888999999888776666655433222211111      1    


Q ss_pred             ----CChhHHHHHHHHHHHhccCC
Q 011316          339 ----AEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       339 ----~~~~v~~~a~~aL~~l~~~~  358 (488)
                          ...+...-++.+|.|++...
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence                12356677788888887654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.35  E-value=0.28  Score=49.12  Aligned_cols=194  Identities=12%  Similarity=0.141  Sum_probs=135.9

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      +..+++|.++++++..|..+|...+.-+-.....-.   +.+++..+++.+...+.+.++.+|+.++.++..++..-...
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            567899999999999999999988877777665433   44777789999999999999999999999998887632211


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                         .+....+..+-+.-. .++..+|....-+++.++.......   .+.-...+..+.+.++-..-|..+.+++.....
T Consensus       404 ---~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             ---hhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence               223333444444333 3377888888888888876422211   122234455566777766778888888877654


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011316          357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      .-+...    +...+++.+.-+.-+++..++..+..++.......++.
T Consensus       477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            332211    23357888888888888899999999888887665554

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.28  E-value=2.4  Score=46.60  Aligned_cols=143  Identities=12%  Similarity=0.095  Sum_probs=99.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      +.+..++..|..+. ..+|..|++||..+...+|....   ...+-..+..-+.+....+|+.|+..++......++...
T Consensus       816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            45677777888777 89999999999999986665432   112234444455567899999999999988766554322


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhcc
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~  229 (488)
                      .     .-..+...+ .++...||..++..+.-+|...|.-.     .....+.++++   ++...++.-+..++.++.-
T Consensus       892 q-----yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 Q-----YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             H-----HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            2     233455555 56778999999999999998764332     23344455554   4455589999999988874


Q ss_pred             C
Q 011316          230 G  230 (488)
Q Consensus       230 ~  230 (488)
                      .
T Consensus       961 ~  961 (1692)
T KOG1020|consen  961 T  961 (1692)
T ss_pred             c
Confidence            3

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.23  E-value=0.66  Score=41.87  Aligned_cols=213  Identities=10%  Similarity=0.110  Sum_probs=145.2

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH----HHHH-HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI----QAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~----~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+.++.++..+...+-+.+..++.+..++....-+..    +.+. ...++..|+..-.. .+++...+-..+....+ .
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcir-h  155 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIR-H  155 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHh-h
Confidence            5778888888888888888888888888775432211    1111 12344445444111 24444444444444444 3


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHH-HHHHHhcCChhHHHHHHH
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGP-LVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~-L~~ll~~~~~~v~~~a~~  349 (488)
                      +...+.++...-+......++.+ ..++...|..+...+..........++..+   +++. --.++.+++.-.+..+..
T Consensus       156 e~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k  234 (342)
T KOG1566|consen  156 EFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK  234 (342)
T ss_pred             HHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence            45666777888888899999988 888999999999888775455555555433   2343 556777889999999999


Q ss_pred             HHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316          350 AISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       350 aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      +|+.+....  .....+++.+...+..++.+|.++...++..|......+.....+.+         ++...+...
T Consensus       235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q---------~V~~IL~~N  301 (342)
T KOG1566|consen  235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQ---------PVRDILVRN  301 (342)
T ss_pred             hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCc---------hHHHHHHhC
Confidence            999997644  33456777666789999999999999999999888877765554433         256666544

>PRK14707 hypothetical protein; Provisional

Probab=96.23  E-value=3.1  Score=47.43  Aligned_cols=401  Identities=12%  Similarity=0.069  Sum_probs=202.1

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .++...++.+.. ++...-..++..|..-+..+ .+....+-..|+-..|-.+-+=++ ..+-..++..|..-...+.+.
T Consensus       373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d-~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l  450 (2710)
T PRK14707        373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDD-LELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTEL  450 (2710)
T ss_pred             hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC-hhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHH
Confidence            567777888875 55566666667777666544 444554444444444433334455 566666666666655557787


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHH-HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH-hHHHHHHHHHHH
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PTDD-VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL-SMLRNATWTLSN  185 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~-~v~~~a~~~L~~  185 (488)
                      ++.+--.+ +...+..++. ++.. .++.+-.....|+.+ +..++.+--.++.. -+.-|.+-.+. .-...+.|.-..
T Consensus       451 ~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~-~~l~~a~~~q~~~~-~L~aLSK~Pd~~~c~~A~~~lA~r  527 (2710)
T PRK14707        451 CKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHE-RRLRKALKPQEVVI-ALHSLSKWPDTPICAEAASALAER  527 (2710)
T ss_pred             HhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhccc-HHHHhhcCHHHHHH-HHHHhhcCCCcHHHHHHHHHHHHH
Confidence            77765555 4444444544 4444 444444444555543 33444433322222 23333344443 334455555555


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHH
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPAL  263 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~  263 (488)
                      +.........+....+...+..+-+.++......+...|.......+.. ..-++.--+..+++.|+. ++ +..+..+.
T Consensus       528 l~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~  606 (2710)
T PRK14707        528 VVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVN  606 (2710)
T ss_pred             hccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHH
Confidence            5544322222233344444444445566666666666666554433333 223444456667777755 44 34444444


Q ss_pred             HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChh
Q 011316          264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFE  342 (488)
Q Consensus       264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~  342 (488)
                      ++-+.+.. .+..... ++..-+..++.-|+.-.+......+...|..-..........+- ..-+..++.-+.. ++.+
T Consensus       607 ~LA~~l~~-~~~lr~~-l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe~e  683 (2710)
T PRK14707        607 ALAERLVD-EPDLRKE-LDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPDTP  683 (2710)
T ss_pred             HHHHHhcc-Chhhhhh-ccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCCch
Confidence            44444443 3333222 23333444444443322445555555555443322233332222 2234444444443 5777


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011316          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  422 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  422 (488)
                      ....|+..|...... ++.....+-.+++-..|-.+-+.++......+...|..-+...+.            ....|..
T Consensus       684 ~Cr~Aa~~LA~rLa~-~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~------------l~~a~~a  750 (2710)
T PRK14707        684 VCAAAAGGMAERLAA-DPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARVVAEPR------------LRKAFDA  750 (2710)
T ss_pred             HHHHHHHHHHHHHhc-ChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChh------------hhhhcCH
Confidence            777888877655443 345555554444444444455567766665655555444432221            2344555


Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHH-HHhc
Q 011316          423 AEGLEKIENLQSHDNTEIYEKAVKIL-ETYW  452 (488)
Q Consensus       423 ~g~~~~l~~l~~~~~~~v~~~a~~~l-~~~~  452 (488)
                      .+.-..|..|..=++.+.-.+|...+ +++.
T Consensus       751 QevANaLNALSKWPd~~~C~~AA~aLA~rLa  781 (2710)
T PRK14707        751 QQVATALNALSKWPDNQACAAAANTLAERQL  781 (2710)
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHh
Confidence            55566677776666555444444444 4444

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.16  E-value=0.23  Score=51.81  Aligned_cols=190  Identities=15%  Similarity=0.134  Sum_probs=129.2

Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHH
Q 011316          201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       201 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      +-+.+-.-+.+.++.-+..++..+............ ....+.+..++... .+.+-.+...++.+|..++.........
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            334455556678899999999988887766541111 11113444444443 4566778888999999999876655333


Q ss_pred             HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011316          280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  359 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  359 (488)
                      . ..++++.+++-+... ...++..+..++-.++...+-       ..+.+.+...+.++++..+..+...+.......+
T Consensus       333 ~-~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~  403 (815)
T KOG1820|consen  333 Y-AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG  403 (815)
T ss_pred             H-HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence            3 336788888888887 777777766666655542221       1367788889999999999998888888776543


Q ss_pred             HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          360 NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       360 ~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +.....-.-.++++.++....+.+.+||.++++++..++..
T Consensus       404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            21111112235788888888899999999999999888755

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.13  E-value=0.81  Score=39.78  Aligned_cols=139  Identities=10%  Similarity=0.134  Sum_probs=99.6

Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc----cchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHH
Q 011316          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLV  333 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~  333 (488)
                      ...++..+..++++ ++.+..+++..+.-.+..+|..    ...+-.|..+.++++.+.. ++.+.+..+...+++|..+
T Consensus        96 VcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            34566666666664 5566777787877777777743    2267789999999999998 5677788888999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          334 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---------GCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       334 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---------~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +.+..++...|.-|...+..+....  ....++++.         -+-..+.++.+.+++.+..+++.+..++...
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999998654  233333221         1122333455667788888888777776543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.09  E-value=0.3  Score=46.46  Aligned_cols=176  Identities=14%  Similarity=0.182  Sum_probs=111.8

Q ss_pred             CHHHHHHHHH-HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011316          129 TDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  207 (488)
Q Consensus       129 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~  207 (488)
                      ..+-+..|+. +..-++.++-...+.... ..+..+++.+.++.+...+..|+..|..++.+.+..-.....-++..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            3444555555 444445444333222211 24556777786668889999999999999999866655555667777777


Q ss_pred             hhccCChhHHHHHHH-HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011316          208 LIHSNDDEVLTDACW-ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  286 (488)
Q Consensus       208 ll~~~~~~v~~~al~-~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  286 (488)
                      .-.+.++++...|.. ++..++...+..        .+..+..++...+......++..+..++..-....-..+-..+.
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia  450 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA  450 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence            766666655544444 444455554432        12333444444666667777778887776433222222234788


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          287 PCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       287 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      |.+++-.++. +..||+.|+++|..+..
T Consensus       451 P~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  451 PCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            8999999999 89999999999997765

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.98  E-value=0.13  Score=45.55  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316           89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus        89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  167 (488)
                      .....|+++|.-++--+|..+..+.....++.++.+|+. ..+.++..++.+|..+..++|.....+.+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            345668889988888899999999999999999999954 6799999999999999999999999999999999999999


Q ss_pred             cc-cccHhHHHHHHHHHHHhhcCC
Q 011316          168 NE-HAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       168 ~~-~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      .. +.+.+++..++..|.-.....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            53 447788888888887665543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.97  E-value=0.067  Score=44.13  Aligned_cols=145  Identities=16%  Similarity=0.155  Sum_probs=99.9

Q ss_pred             HHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011316          244 CPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  321 (488)
Q Consensus       244 l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  321 (488)
                      ++.++..|.  ...+++|..+.-++..+..    ..+.-....+-+.+...+..+ +.+-...++.++..+--..++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence            344454444  3567899999888888842    222222333445566666666 666788888999998888788777


Q ss_pred             HHH-HcCChHHHHHHHh--cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHH-HHHHHHHHHHH
Q 011316          322 AII-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPR-IVTVCLEGLEN  396 (488)
Q Consensus       322 ~l~-~~~~l~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~-v~~~al~~L~~  396 (488)
                      .++ ..|+++.+..++.  .++..++..++.+|..-+.+  ...+ ..+...+++.|.+.++. ++.. ++..|+-+|.+
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            766 5788999999999  66888999999999888763  3444 44555889999999964 4455 67777666554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.96  E-value=0.12  Score=50.01  Aligned_cols=250  Identities=12%  Similarity=0.055  Sum_probs=133.6

Q ss_pred             HHHHHHhcCCCch-hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH
Q 011316           95 AWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  173 (488)
Q Consensus        95 ~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~  173 (488)
                      -..|..+....+. .....+....+..|+.++.++++.-|.....+|.++...-...|..+.. .....+.+.+......
T Consensus       111 Y~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~  189 (409)
T PF01603_consen  111 YEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERH  189 (409)
T ss_dssp             HHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccc
Confidence            4445555442211 1333445567889999999999999999999999886544444444432 3444556666444555


Q ss_pred             hHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011316          174 SMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  251 (488)
                      .-...++..++.+..+-.. .......-....++.+.+.+.- ........++......++.....++     ..++..=
T Consensus       190 ~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~W  264 (409)
T PF01603_consen  190 NGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHW  264 (409)
T ss_dssp             STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhC
Confidence            5567788888888877532 2233334444566666665532 2345555555555555544433222     2222222


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCC
Q 011316          252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGI  328 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~  328 (488)
                      -..++.-...-+.-+..+....+...-.-+...+...+-..++++ +..|-..|+....|=     . ...++.   ..+
T Consensus       265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~i  337 (409)
T PF01603_consen  265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRVI  337 (409)
T ss_dssp             -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHHH
Confidence            222333333344555555543322211112224667777778888 888888877654321     1 111221   125


Q ss_pred             hHHHHHHHhc----C-ChhHHHHHHHHHHHhccC
Q 011316          329 IGPLVNLLLN----A-EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       329 l~~L~~ll~~----~-~~~v~~~a~~aL~~l~~~  357 (488)
                      +|.+...+..    . +..++..|..++.-+..-
T Consensus       338 ~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  338 LPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             HHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            6666665543    2 678999999888888764

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=2  Score=43.32  Aligned_cols=187  Identities=14%  Similarity=0.095  Sum_probs=121.6

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCc----hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      =|.|.+-|+-.+ ..+|..|+..+.+.-- .+|    +..+.+++.. ...+-.+|+++.+.+|..|...++.+...   
T Consensus       176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~---  250 (1005)
T KOG1949|consen  176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK---  250 (1005)
T ss_pred             hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH---
Confidence            355566677788 7999999999988764 223    3344455433 67888899999999999998877776532   


Q ss_pred             hHHHHHh---cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316          150 CRDLVLS---NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       150 ~~~~~~~---~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  226 (488)
                      +...+-.   ...+..++.-+..++..+|+......|..+..++  ........++|++-..+.+....|+..+...|..
T Consensus       251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            1111111   1133344444445666788989988888888774  3333445677777788888889999999888887


Q ss_pred             hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      +-....   -.+.+---++.++..|..++..+.+..+..|.+.+.
T Consensus       329 ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l  370 (1005)
T KOG1949|consen  329 IKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL  370 (1005)
T ss_pred             HHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence            643321   112222234556666776666666666666655554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.94  E-value=0.052  Score=46.47  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--------CCChhHHHHHHHHHHHh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--------DDFPQLQFEAAWALTNI  101 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~~v~~~a~~~L~~l  101 (488)
                      .....+++.+.+.....  ..+..|...+.+.+...++.+++.||+..|+++|..        .........+++|+..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34556788887755442  444455555555434557888889999999998752        12257889999999999


Q ss_pred             cCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011316          102 ASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus       102 ~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~  144 (488)
                      .. +...+..++ ..+.+..+...|.+++..++..++.+|+.+|
T Consensus       144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98 555555555 5689999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=2.3  Score=43.20  Aligned_cols=276  Identities=14%  Similarity=0.073  Sum_probs=150.7

Q ss_pred             ccHHHHHHHhc-C-------CCHHHHHHHHHHHHHHhc--cCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHH
Q 011316           30 ESLPAMVAGVW-S-------DDRNIQLDATTQFRKLLS--IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT   99 (488)
Q Consensus        30 ~~i~~l~~~L~-s-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~   99 (488)
                      |.++-+...|. +       +++.....|++.+.++.+  +. .....-+.+.=+++.++..++++. --++.+||..+.
T Consensus       408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is  485 (970)
T COG5656         408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFIS  485 (970)
T ss_pred             hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHH
Confidence            67777787773 1       334555567777777665  33 333444455555666667778887 689999999999


Q ss_pred             HhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHH
Q 011316          100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLR  177 (488)
Q Consensus       100 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~v~~  177 (488)
                      .+..+-+   +...-..+.+....++.+.+-.++-.|+-++.-+..+.. ....+. ..+.+.+-++|.  +.-+.++..
T Consensus       486 ~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~s-ahVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         486 TIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFS-AHVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHH-hhhhHHHHHHHHhcccccchHHH
Confidence            9954322   222223456677778888888888888888888876653 333332 222222222321  333444444


Q ss_pred             HHHHHHH-HhhcCCCCCChhhhhchHH----HHHHhhccCC------hhHHHHHHHHHHHhcc---CCchh--HHHHHHh
Q 011316          178 NATWTLS-NFCRGKPQPLFEQTRPALP----ALERLIHSND------DEVLTDACWALSYLSD---GTNDK--IQAVIEA  241 (488)
Q Consensus       178 ~a~~~L~-~l~~~~~~~~~~~~~~~~~----~L~~ll~~~~------~~v~~~al~~L~~l~~---~~~~~--~~~~~~~  241 (488)
                      .+...+. .++..-..-........+.    ....++.+++      .+-+..|...|..+..   .-++.  .-.-...
T Consensus       561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~  640 (970)
T COG5656         561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV  640 (970)
T ss_pred             HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            4443333 2222211111122222333    3333333321      1223344444443321   11111  1112223


Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ...|.+--.|++.-.+.-..|+.++-+.+....+..  -+.-|+.+.+.+++.+......-.+++-++.|+..
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit  711 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT  711 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            455555556677777788888888877765433222  12336777788888777333566788888999876

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.91  E-value=0.2  Score=52.17  Aligned_cols=195  Identities=13%  Similarity=0.099  Sum_probs=134.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhh
Q 011316          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR  199 (488)
Q Consensus       120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  199 (488)
                      .+..-+.+.+..-|..++..+........ .....-..+.+..++.....+.+..+...++.+|..++..-.....-+..
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~  335 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK  335 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            34444455777888888888887775544 11111122345566666667788888999999999998876444555667


Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhH
Q 011316          200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQ  278 (488)
Q Consensus       200 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~  278 (488)
                      .+.|.++.-+......++..+..++..++.....       ....+.+...+.+.+|.++..+...+.......+. ...
T Consensus       336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~  408 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE  408 (815)
T ss_pred             hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence            8889999999888888888888777776653221       14567888899999999999987777777665441 111


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHH
Q 011316          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAI  323 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l  323 (488)
                      .-.-.++++.++....+. +..||..|..+++-+.. ...+....+
T Consensus       409 ~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~  453 (815)
T KOG1820|consen  409 KETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL  453 (815)
T ss_pred             hhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            111235778888888888 89999999999988876 334434333

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.86  E-value=0.15  Score=45.14  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011316           45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  124 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  124 (488)
                      .....|++.|.-++--. ++....+.+...+..++++|.....+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus       106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34556778887766554 66677777899999999999665448999999999999999899999999999999999999


Q ss_pred             hCC--CCHHHHHHHHHHHhhhhCC
Q 011316          125 LSS--PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus       125 L~~--~~~~~~~~a~~~L~~l~~~  146 (488)
                      +++  .+.+++-.++..|.-+...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcc
Confidence            987  5688888888888776543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.81  E-value=0.013  Score=33.19  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                      ++|.+++++++++++||..|+.+|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.76  E-value=1.1  Score=40.33  Aligned_cols=219  Identities=15%  Similarity=0.148  Sum_probs=128.3

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316           77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus        77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      .|-..|.+++ +.+|..|+.+|+.+...-+...   ....-+..|+.++.+  .+......++.++..+.....-.....
T Consensus         3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA   78 (262)
T ss_pred             chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence            3446678888 8999999999999887444321   222235666665544  555666666777777764332111111


Q ss_pred             HhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCc
Q 011316          155 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       155 ~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~  232 (488)
                        ...+..+.+... +......|..+...+..+..............++..+++.+..+ ||.-...+...+..+...-+
T Consensus        79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence              112333333221 22244567777778877776642222223356777788888764 78877777777777765443


Q ss_pred             hhHHHHHHhCCHHHHHHhcCC----------CCc--chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316          233 DKIQAVIEAGVCPRLVELLRH----------PSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       233 ~~~~~~~~~~~l~~L~~lL~~----------~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      .  .     ...+.+.+.+..          ++|  -.++.--..|.+....++...     .-.++.+++-|.++ ...
T Consensus       157 ~--~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~  223 (262)
T PF14500_consen  157 I--S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPS  223 (262)
T ss_pred             c--c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcH
Confidence            1  1     223333333321          122  233333334444444344332     35788999999999 888


Q ss_pred             HHHHHHHHHHHHhc
Q 011316          301 IKKEACWTISNITA  314 (488)
Q Consensus       301 v~~~a~~~L~nl~~  314 (488)
                      +|..++.+|..++.
T Consensus       224 ~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  224 VKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998877

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.097  Score=50.74  Aligned_cols=151  Identities=23%  Similarity=0.330  Sum_probs=99.4

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC
Q 011316           80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  158 (488)
Q Consensus        80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  158 (488)
                      +++.+.+ +-+|...+..++.--.++.       +.|++..++.. .++.+.++|+.|..+|+-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 5555555544433222111       33567777776 6668999999999999999977664         


Q ss_pred             ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHH
Q 011316          159 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  238 (488)
Q Consensus       159 ~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~  238 (488)
                      .+...+++|.++.+..++...+.+|.-.|.+...      ..++..|-.++.+++.-|++.|+-+++.+.....+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            4667778887778899999999999988877521      2345666677788889999999999988774332221111


Q ss_pred             HHhCCHHHHHHhcCCC
Q 011316          239 IEAGVCPRLVELLRHP  254 (488)
Q Consensus       239 ~~~~~l~~L~~lL~~~  254 (488)
                      +. ++...+.+.+.+.
T Consensus       660 v~-~I~k~f~~vI~~K  674 (926)
T COG5116         660 VK-RIIKKFNRVIVDK  674 (926)
T ss_pred             HH-HHHHHHHHHHhhh
Confidence            11 4555666666544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.65  E-value=0.52  Score=47.13  Aligned_cols=144  Identities=17%  Similarity=0.148  Sum_probs=105.1

Q ss_pred             CHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCch
Q 011316           74 VVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        74 ~i~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      +-|...+...+.   +++.++..|..+|..+..-+.+....     -+|.|+..++ +++|.+|.+|.-.++.+.-.-..
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            344444555441   23889999998988877645554443     3799999988 69999999999999987643222


Q ss_pred             hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316          150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      ..+.     ....|.+.| .+.+..|++.++.++..+....    .....|-++.+..++.++|..+...|-..+..++.
T Consensus       968 ~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         968 TADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             hhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            2111     345677777 6788899999999999987654    24456888899999999999998888888888876


Q ss_pred             CCc
Q 011316          230 GTN  232 (488)
Q Consensus       230 ~~~  232 (488)
                      .+.
T Consensus      1038 KdN 1040 (1128)
T COG5098        1038 KDN 1040 (1128)
T ss_pred             ccc
Confidence            553

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.64  E-value=0.016  Score=32.75  Aligned_cols=28  Identities=29%  Similarity=0.478  Sum_probs=25.1

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +|.+++++++++ +++|..|+++|+.+++
T Consensus         2 lp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            789999999999 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.61  E-value=3  Score=42.19  Aligned_cols=205  Identities=17%  Similarity=0.181  Sum_probs=122.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+..+++...+.+..+|.+++..|..+.. + ...++..+-.+....+..-+.+.. |.+|.+|+.+|+.+-.+..+. 
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~-~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-E-NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhc-c-ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC-
Confidence            677788888889999999999999999764 3 344555555677778877788888 899999999999998522221 


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH-HHHHHhh
Q 011316          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT-WTLSNFC  187 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~-~~L~~l~  187 (488)
                          +..+...+..+++. +++++|+.|+..   ++-++.          ..+.++... ++-+...++-+- .++-.+ 
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLsn---I~vdns----------Tlp~IveRa-rDV~~anRrlvY~r~lpki-  221 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALSN---ISVDNS----------TLPCIVERA-RDVSGANRRLVYERCLPKI-  221 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHHh---hccCcc----------cchhHHHHh-hhhhHHHHHHHHHHhhhhh-
Confidence                23457788888876 889999986554   443322          233444443 333333333222 111111 


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHH
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTV  266 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L  266 (488)
                          ..........+..+-.-+.+.+..++..+...|..=.-      . ..+ |=+.-+++-|+- .+.+++..++.++
T Consensus       222 ----d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl------~-~~d-gni~ElL~~ldvsnss~vavk~leal  289 (892)
T KOG2025|consen  222 ----DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWL------R-FSD-GNILELLERLDVSNSSEVAVKALEAL  289 (892)
T ss_pred             ----hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh------h-hcc-ccHHHHHHHhccccchHHHHHHHHHH
Confidence                11111222333334444555566777776666654111      1 111 333444444543 4457888888877


Q ss_pred             hHh
Q 011316          267 GNI  269 (488)
Q Consensus       267 ~~l  269 (488)
                      -..
T Consensus       290 f~~  292 (892)
T KOG2025|consen  290 FSG  292 (892)
T ss_pred             HHH
Confidence            664

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.60  E-value=0.47  Score=45.37  Aligned_cols=135  Identities=13%  Similarity=0.205  Sum_probs=96.3

Q ss_pred             CccHHHHHH-cCCHHHHHHhhcCCCC--hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-C---CCHHHHHH
Q 011316           63 SPPINEVIQ-SGVVPRFIEFLSRDDF--PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S---PTDDVREQ  135 (488)
Q Consensus        63 ~~~~~~~~~-~~~i~~L~~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~~~~~  135 (488)
                      ....+.+++ ......|...+++...  +.+-..|+.++..+....|..-..+.+.|+++.++..+. .   ++.++...
T Consensus        95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~  174 (379)
T PF06025_consen   95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS  174 (379)
T ss_pred             ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence            344555666 5667777777776542  688899999999999988999999999999999999887 4   67888888


Q ss_pred             HHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH------hHHHHHHHHHHHhhcCCCCCChhhh
Q 011316          136 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       136 a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      .-.+++.||-+... .+.+.+.+.+..+++.+......      +.....-..+-.|.++.|.-+....
T Consensus       175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~  242 (379)
T PF06025_consen  175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII  242 (379)
T ss_pred             HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence            88999999988765 56777789999999888322111      2223333444455555544433333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.52  E-value=0.14  Score=35.52  Aligned_cols=66  Identities=24%  Similarity=0.358  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316          302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                      .+.|+|+++++++. +.....+.+.++++.++++.... ...+|..|..+|+-++.  +.+..+.|.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999875 55566666789999999998864 77899999999999986  456667766654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.51  E-value=2.8  Score=44.00  Aligned_cols=239  Identities=17%  Similarity=0.198  Sum_probs=141.8

Q ss_pred             chHHHHHHhhcc-----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC----CCC----cchHhHHHHHH
Q 011316          200 PALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRTV  266 (488)
Q Consensus       200 ~~~~~L~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~a~~~L  266 (488)
                      +++..++.++.+     .........+..|...+.-.. ..+.+++.+.++.|+..+.    .+.    +.+.+..+.++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~-NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKV-NRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHH-HHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence            667777777764     234566667777777776644 4467888999999888874    333    56777777777


Q ss_pred             hHhhcCCchhhH----HHh--------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011316          267 GNIVTGDDMQTQ----CII--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       267 ~~l~~~~~~~~~----~~~--------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  331 (488)
                      ..+.........    ...        ...-+..+++.+.++.   ++.+....+.+|-+|+.++.+..+.+++.  +..
T Consensus       196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p  273 (802)
T PF13764_consen  196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP  273 (802)
T ss_pred             HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence            666643221100    000        1122566666665542   57888999999999999988888887763  232


Q ss_pred             HHHHHhcC---ChhHHHHHHHHHHHhccCC-----CHHHHHHHHHCCChHHHHhhcCCC--------CHH--------HH
Q 011316          332 LVNLLLNA---EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCP--------DPR--------IV  387 (488)
Q Consensus       332 L~~ll~~~---~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~~~~L~~ll~~~--------~~~--------v~  387 (488)
                      .+++=.-+   ..+- ...+.+++.++.+-     ....+..+++.|++...++++...        .++        -.
T Consensus       274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            22321111   1111 22355555555432     245677888999999888876521        111        23


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCC
Q 011316          388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      ..++..|.-++..-..             .+.+...+++..+..|- .+....|-..|-.+|+.+-+.+
T Consensus       353 p~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  353 PYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            3455555555443221             22223455677777774 3336678888888888776633

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.46  E-value=1.7  Score=38.57  Aligned_cols=141  Identities=21%  Similarity=0.220  Sum_probs=94.1

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      ++.|+.-+....+++.+...+..|..++........     -++..+..+...+..+.+..+.+.+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            345555344444489999999999999984412222     235677777777777877788888888876555321   


Q ss_pred             HhcCChHHHHHHh---------cccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH
Q 011316          155 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL  224 (488)
Q Consensus       155 ~~~~~i~~l~~~l---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L  224 (488)
                         +.+..++..+         ..+...+.......++..+|...|.    .....++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2334343331         1122334445556778888887755    5567788888888 788899999999999


Q ss_pred             HHhccC
Q 011316          225 SYLSDG  230 (488)
Q Consensus       225 ~~l~~~  230 (488)
                      ..++..
T Consensus       147 ~~Lc~~  152 (234)
T PF12530_consen  147 APLCEA  152 (234)
T ss_pred             HHHHHH
Confidence            999943

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.42  E-value=0.69  Score=44.99  Aligned_cols=157  Identities=11%  Similarity=0.117  Sum_probs=113.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCch
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~  107 (488)
                      ....+.+.+.+++...+..+...|..+.. + ......++...++..|.+++.++..   .++...+++++..+....--
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSL-D-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccc-c-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            45678899999999999998888888543 3 5678899999999999999988751   45666666666666552221


Q ss_pred             hhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          108 NTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                      ..+ .+...++.....+..  ..+..+-..|+..|-++...++..+..+.+.--+..++..+ +..+..++..|...+..
T Consensus       162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            111 112233333333332  25667778899999999888887788888888899999999 77888888888888877


Q ss_pred             hhcCCC
Q 011316          186 FCRGKP  191 (488)
Q Consensus       186 l~~~~~  191 (488)
                      +....+
T Consensus       240 l~~~a~  245 (713)
T KOG2999|consen  240 LFRKAP  245 (713)
T ss_pred             HHhhCC
Confidence            766553

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.37  E-value=1.8  Score=39.05  Aligned_cols=225  Identities=14%  Similarity=0.061  Sum_probs=127.8

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--CCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--DDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      |=..|.++|+..|..|...|..++..-+.+..    ...-+..|++.+.+  .+ ......++.++..+... .......
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L----~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFL----SRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPES   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc----cHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhh
Confidence            44567899999999999999999886632221    11223444444322  23 33444446666666642 2211111


Q ss_pred             HhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          113 IDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       113 ~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                       ...++..+.+-.+  +.....|..+..++..+..+....- .-+..+.+..+++.+....||.-...+...+..+...-
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence             0112333333222  2446778888888888875532211 11223467788888867778988888888888777664


Q ss_pred             CCCChhhhhchHHHHHHhh----cc-C-Ch--hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHH
Q 011316          191 PQPLFEQTRPALPALERLI----HS-N-DD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA  262 (488)
Q Consensus       191 ~~~~~~~~~~~~~~L~~ll----~~-~-~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  262 (488)
                      +.  ..........+.-.+    +. + |+  -.++..-..|.+.....+..     ..-.++.|++-|.+..+.++..+
T Consensus       156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~  228 (262)
T PF14500_consen  156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDS  228 (262)
T ss_pred             cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHH
Confidence            31  112222233222221    11 1 21  13444444555544443322     23678999999999999999999


Q ss_pred             HHHHhHhhcCCc
Q 011316          263 LRTVGNIVTGDD  274 (488)
Q Consensus       263 ~~~L~~l~~~~~  274 (488)
                      +.+|..++...+
T Consensus       229 L~tL~~c~~~y~  240 (262)
T PF14500_consen  229 LQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHCC
Confidence            999988876443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.36  E-value=3.3  Score=41.16  Aligned_cols=291  Identities=12%  Similarity=0.064  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      -..|..|+..|...+..-+-..+..     +....-.++..+...+.|..++..+..+....... ......-....+  
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I--   75 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMRAEFFRDI--   75 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHH--
Confidence            3567788888888776543222222     34444566766655789999999999888743321 111111111122  


Q ss_pred             hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--------------------------cHhHHH
Q 011316          124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSMLR  177 (488)
Q Consensus       124 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~v~~  177 (488)
                       -....++-...-+.+|..|+.+..+.  ...+.+..+.+...+...-                          +.....
T Consensus        76 -~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   76 -SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             -hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence             22233444445566677776665544  2245555666655552111                          222333


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC
Q 011316          178 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS  255 (488)
Q Consensus       178 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  255 (488)
                      ..+..+.++.+.+ .........+.+..++.+... .+......++..+..+.....--...+.  .++..|.....  .
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~--~  228 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVN--S  228 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhc--c
Confidence            4444555555544 223334445555555555432 2344445555555554432210000000  22333333322  2


Q ss_pred             cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc--c---chhhHHHHHHHHHHHHhcCCHHHHHHHHH-c--C
Q 011316          256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--N---YKKSIKKEACWTISNITAGNVNQIQAIIE-A--G  327 (488)
Q Consensus       256 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~--~  327 (488)
                      .+....+-.++.||+...-..       ..+..|..+|.+  +   .+..+.+.|+..+..+..+..+....-+. .  -
T Consensus       229 ~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~  301 (464)
T PF11864_consen  229 VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS  301 (464)
T ss_pred             cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence            366777888888888633211       245667777732  1   14556678888888887754222221121 2  2


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      +++.+...++.++..+-.+.+..+.++..
T Consensus       302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  302 VLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            78888899998877777777777777773

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.36  E-value=5.6  Score=43.98  Aligned_cols=147  Identities=10%  Similarity=0.058  Sum_probs=85.1

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      +++|.|-.-|.+. +..+|..|...++.+......... =-....+...+.-+.+.+.+||.+++....++..+. +...
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~  335 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIA  335 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhh
Confidence            6888898888888 899999999999999875333222 001234566666677778999999999998887653 3322


Q ss_pred             HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316          364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       364 ~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  443 (488)
                      ...   +....+....  .|+.++....-++.. +....             +.-.+... .+..+.+-+.+...+|+..
T Consensus       336 ~~~---~~~~~l~~~~--~D~~~rir~~v~i~~-~~v~~-------------~~l~~~~~-ll~~~~eR~rDKk~~VR~~  395 (1266)
T KOG1525|consen  336 KAS---TILLALRERD--LDEDVRVRTQVVIVA-CDVMK-------------FKLVYIPL-LLKLVAERLRDKKIKVRKQ  395 (1266)
T ss_pred             hHH---HHHHHHHhhc--CChhhhheeeEEEEE-eehhH-------------hhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence            221   2233333333  333333222111111 11111             11111112 3455556666677788888


Q ss_pred             HHHHHHHhcC
Q 011316          444 AVKILETYWV  453 (488)
Q Consensus       444 a~~~l~~~~~  453 (488)
                      |..-+..+|.
T Consensus       396 Am~~LaqlYk  405 (1266)
T KOG1525|consen  396 AMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHH
Confidence            8777776666

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.28  E-value=0.22  Score=41.16  Aligned_cols=147  Identities=10%  Similarity=0.055  Sum_probs=88.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.|+++|+.+.+..+|..++++++.+-.-+|-..+.+....  +.-  .-...+......... ..+.....    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----H
Confidence            46788889998886699999999999999886665444322111  100  001111122221111 11111111    2


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ...-..++..|++.+.+.+-..-...++.++.++..............++|.++..+++.+...++..+.-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2222335778888884444444455677777777755545557778899999999999877788888777766653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=4.6  Score=41.48  Aligned_cols=343  Identities=12%  Similarity=0.094  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH--hCCCHHHH
Q 011316           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIF  121 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L  121 (488)
                      .-+|.+.++.+....+..-   ..+ ...-.-..++++|++.++--++..+++.+.-+..+-.-..+.+.  -......+
T Consensus       501 RiiRRRVa~ilg~Wvsvq~---~~e-~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l  576 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQ---KLE-LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL  576 (978)
T ss_pred             hHHHHHHHHHHhhhhheec---hHh-HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence            3556677777777665321   111 11224556788898885477889999999888763222222222  12344455


Q ss_pred             HHhhCC-CCHHHHHHHHHHHhhhhCCCchhH-HHHHhcCChHHHHHHh-ccc-ccHhHHHHHHHHHHHhhcCCCCCChhh
Q 011316          122 VRLLSS-PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQF-NEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ  197 (488)
Q Consensus       122 ~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~~l-~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~  197 (488)
                      .++++. +.-+.+...+.+++.+.....+.. ....   .+-.++..+ ..+ +.+-++...+.+|.++...-.......
T Consensus       577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~  653 (978)
T KOG1993|consen  577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF  653 (978)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence            555554 556777778888887764332211 1111   111222222 222 234456677788888876543333333


Q ss_pred             hhchHHHHHHhhccC----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          198 TRPALPALERLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       198 ~~~~~~~L~~ll~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      ..-.+|. +++-.++    ..-..+.++..-.....+.+.....+.  +++|.+..++....+. ...++.++....--.
T Consensus       654 ~~fL~pV-Iel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd  729 (978)
T KOG1993|consen  654 YPFLYPV-IELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLD  729 (978)
T ss_pred             hHHHHHH-HHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhc
Confidence            2333333 3332222    122344444433333333333323333  5677777777654433 334444444333211


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHH
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAI  351 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL  351 (488)
                      ....-.-...|+.+.+.+++.+- ..+-....+.++..+...++ ........++++.+..-+-.  +.+.+...-+..+
T Consensus       730 ~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vv  807 (978)
T KOG1993|consen  730 NTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVV  807 (978)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHH
Confidence            11111112346777777777665 44455566666666666544 55666677888888776543  3667778888888


Q ss_pred             HHhccCCCHHHHHHHH-HCCChHHHHh-h-------cC-CCCHHHHHHHHHHHHHHHHh
Q 011316          352 SNATSGGSNEQIKFLV-SQGCIKPLCD-L-------LN-CPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       352 ~~l~~~~~~~~~~~l~-~~~~~~~L~~-l-------l~-~~~~~v~~~al~~L~~l~~~  400 (488)
                      +.+.... ++....+. +..-.+.++. +       .. -.+++-++.-+-++..++..
T Consensus       808 aRi~l~n-~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t  865 (978)
T KOG1993|consen  808 ARISLRN-PSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT  865 (978)
T ss_pred             HHHHhcC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence            8887654 33333332 2222223331 1       11 13455555555566666654

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.13  E-value=3  Score=39.32  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-hHHHHHHHhcC-----C--------hhHHHHHHH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW  349 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-l~~L~~ll~~~-----~--------~~v~~~a~~  349 (488)
                      ++.+.+.|.+. ...+...++..+..++. .+......++.. ++ .+.+-+++...     +        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888888888 67778899999999998 666666666642 22 34455555321     1        289999999


Q ss_pred             HHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316          350 AISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      .+..+...+++..+..+.+ .+.+..+..-+..++++++...+..+..-+-.+....+.        .+..+=....+.+
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~fn~~~L~~  208 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLFNEWTLSQ  208 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhcCHHHHHH
Confidence            9999988888887777665 467888888888888999999999998655444443322        2333333446888


Q ss_pred             HHHhhcCCCH----HHHHHHHHHHHHhcC
Q 011316          429 IENLQSHDNT----EIYEKAVKILETYWV  453 (488)
Q Consensus       429 l~~l~~~~~~----~v~~~a~~~l~~~~~  453 (488)
                      |..+...+++    .+.+.+...+..+.-
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            9999888888    899999999988775

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.09  E-value=3  Score=43.51  Aligned_cols=193  Identities=18%  Similarity=0.198  Sum_probs=113.0

Q ss_pred             HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhccCCh-h
Q 011316          139 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E  215 (488)
Q Consensus       139 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~L~~ll~~~~~-~  215 (488)
                      ++.++....+...+.+.+.+++..+...+..-...+++..++..+.+++...+..........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            34466666677777888999999999999756778899999999999987663333322222222  22233333333 6


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHH-HHHHhc
Q 011316          216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-LLDLLT  294 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-L~~lL~  294 (488)
                      .-..++..+..+....++.......               +.+...-..++......   ....... ..+.. +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~---~~~~~~~-~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTS---EIRVIND-RSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCcc---ceeehhh-hhcchhHHHHhc
Confidence            6666777777666554321111111               11222222222222211   1111112 22233 666666


Q ss_pred             ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHH
Q 011316          295 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWA  350 (488)
Q Consensus       295 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~a  350 (488)
                      ....+....-|.|++.++...+++..+.+.+.++++.+...-... ..+++..+...
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV  691 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence            655778889999999999998788888888888888877654433 33444444433

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.07  E-value=2.6  Score=38.26  Aligned_cols=207  Identities=14%  Similarity=0.113  Sum_probs=139.1

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh---hHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHH
Q 011316          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISN  311 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~n  311 (488)
                      +.+.+.|.+..++..+..-+-+.+..++.+..++-...-..   ....+.. -.+.+..++..-.+ +++-..+...+..
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            45677799999999998888888888888888887632211   1111111 12223333333322 4555555556666


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCC----hHHHHhhcCCCCHHHH
Q 011316          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPRIV  387 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----~~~L~~ll~~~~~~v~  387 (488)
                      +.++ +...+.+....-+.....+++.+..++...|......+...........+.. +.    .+.-..++++.+.-++
T Consensus       152 cirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~-n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  152 CIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR-NYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh-ChhhhHHHHHHHHhcccceehH
Confidence            6555 5566667777888889999999988999999999988877654334444433 33    4446668888898889


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .+++.++..++....+...         ....+.+..-++.+..++.+++..+|-.|-.+-.-+.-.
T Consensus       230 rqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            9999999988765544332         355566556688888888888888888877766554443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.06  E-value=2.1  Score=41.08  Aligned_cols=134  Identities=14%  Similarity=0.171  Sum_probs=95.9

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhhhCC
Q 011316           77 RFIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus        77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~~l~~~  146 (488)
                      .+..++...+ ++-|..|+......++..   ..+++.+.+.-+.+.+-+++.+       ++.-.+..++.+|..+|++
T Consensus        15 ~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   15 DCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            3556666666 688999999999998843   3456667777778888888875       2345567778888888876


Q ss_pred             Cchh-HHHHHhcCChHHHHHHhcccccHh------HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC
Q 011316          147 SPKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND  213 (488)
Q Consensus       147 ~~~~-~~~~~~~~~i~~l~~~l~~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~  213 (488)
                      .+-. .+.++  +.|+.++..+.+..|++      +...+..+|..++...+........|.++.+.++-.-++
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~  165 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD  165 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence            4321 12233  35888888886554444      788889999999988777777788999999998766443

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.06  E-value=0.82  Score=44.41  Aligned_cols=237  Identities=14%  Similarity=0.072  Sum_probs=137.2

Q ss_pred             hhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHH
Q 011316           21 MFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN  100 (488)
Q Consensus        21 ~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~  100 (488)
                      .+..     .-+..|+..+.|+|+..|......|..+-.+-  ...+..+...+...+.+.+.....+.-....+++++.
T Consensus       129 ~i~~-----~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~--~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~s  201 (409)
T PF01603_consen  129 YIDQ-----KFIKKLLELFDSPDPRERDYLKTILHRIYGKF--PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGS  201 (409)
T ss_dssp             TS-H-----HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHH
T ss_pred             HcCH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH
Confidence            5666     77889999999999999999999999987653  3344555556777888888765546677888999999


Q ss_pred             hcCCCc-hhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHH
Q 011316          101 IASGTS-ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN  178 (488)
Q Consensus       101 l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~  178 (488)
                      +..+-. ..++.. ..=....++.+.+.+. ......-..++..++..++.....     .+..+++.- ..+++.-...
T Consensus       202 ii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~  274 (409)
T PF01603_consen  202 IINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVL  274 (409)
T ss_dssp             HHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHH
T ss_pred             HHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHH
Confidence            988532 111111 0011234444444432 333455555666665555543222     233444444 3344444444


Q ss_pred             HHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCC-
Q 011316          179 ATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-  253 (488)
Q Consensus       179 a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-  253 (488)
                      -+.-+..+...-+... ......+...+...+.+++..|.+.|+..+.|-      ....++..   .+++.+...+.. 
T Consensus       275 FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~------~~~~li~~~~~~i~p~i~~~L~~~  348 (409)
T PF01603_consen  275 FLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE------YFLSLISQNSRVILPIIFPALYRN  348 (409)
T ss_dssp             HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH------HHHHHHHCTHHHHHHHHHHHHSST
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH------HHHHHHHhChHHHHHHHHHHHHHH
Confidence            4444555554432222 223356777788888899999999888665431      11122222   355666666533 


Q ss_pred             ---C-CcchHhHHHHHHhHhhcCCchhh
Q 011316          254 ---P-SPSVLIPALRTVGNIVTGDDMQT  277 (488)
Q Consensus       254 ---~-~~~v~~~a~~~L~~l~~~~~~~~  277 (488)
                         . +..++..|..++..+...++...
T Consensus       349 ~~~HWn~~Vr~~a~~vl~~l~~~d~~lf  376 (409)
T PF01603_consen  349 SKNHWNQTVRNLAQNVLKILMEMDPKLF  376 (409)
T ss_dssp             TSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence               1 56799999999988887666443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.05  E-value=1.9  Score=42.52  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011316          195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       195 ~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      .....+.+..+++.+.+++..|+..++..|..++..-.+. ...+-.+++..|.+-+-+..+.||..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            4456777888888888999999999999999888654433 334444778888888877888999999999988764322


Q ss_pred             hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      ..     +..+...+..++++.++.+||+.|+.-+.
T Consensus       165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni~  195 (885)
T COG5218         165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNIS  195 (885)
T ss_pred             Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence            11     12344567778877768899988765443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.00  E-value=1.6  Score=41.73  Aligned_cols=275  Identities=17%  Similarity=0.160  Sum_probs=139.4

Q ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh-hcCCCCCCh
Q 011316          118 VPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF-CRGKPQPLF  195 (488)
Q Consensus       118 i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l-~~~~~~~~~  195 (488)
                      +..++.-+. +.+..+|..++--|+.-+.+ +.++..+...|....+++.+....+..+...++.++..+ +.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            455555554 35678888888888888765 558999999999999999995555443555555555444 444344444


Q ss_pred             hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc---------CCCCcchHhHHHHH
Q 011316          196 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRT  265 (488)
Q Consensus       196 ~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~v~~~a~~~  265 (488)
                      .........+..++... ...+....-      ... ........+ .....+...+         .....+.+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            34455666667776611 000000000      000 000011111 1112122222         01223445556666


Q ss_pred             HhHhhcC--------------CchhhHHHhhCCChHHHHHHhcc----cc-----------hhhHHHHHHHHHHHHhcCC
Q 011316          266 VGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY-----------KKSIKKEACWTISNITAGN  316 (488)
Q Consensus       266 L~~l~~~--------------~~~~~~~~~~~~~~~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~~~  316 (488)
                      +-.++..              .+.....+.+.|+++.++.++..    ..           +...-..+..+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            6666411              11223445566788888888752    10           1122345667777777655


Q ss_pred             HHHHHHHHH--cCChHHHHHH----HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc-------C---
Q 011316          317 VNQIQAIIE--AGIIGPLVNL----LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-------N---  380 (488)
Q Consensus       317 ~~~~~~l~~--~~~l~~L~~l----l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll-------~---  380 (488)
                      .++..+++.  .+.++.+...    ...........++..+.|++-+. +.....+...++...+..+.       .   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            555555543  2233333222    22223445678888999997654 33444444433322221111       1   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhh
Q 011316          381 ----CPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       381 ----~~~~~v~~~al~~L~~l~~~~~  402 (488)
                          ...-++...+++++.|+++..+
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                1123566677777777766544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.98  E-value=4.3  Score=42.39  Aligned_cols=175  Identities=15%  Similarity=0.188  Sum_probs=110.0

Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHhcCCh-
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEAGIIGPLVNLLLNAEF-  341 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~-  341 (488)
                      +++++...++...+.+++.+++..+...++.-....++..+...++|++...  .+......... ...+..++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence            7889999999999999999999999999986557789999999999999732  22111111111 1223333333333 


Q ss_pred             hHHHHHHHHHHHhccCCCH--------HHHHHHHH--------------CCChHH-HHhhcC-CCCHHHHHHHHHHHHHH
Q 011316          342 EIKKEAAWAISNATSGGSN--------EQIKFLVS--------------QGCIKP-LCDLLN-CPDPRIVTVCLEGLENI  397 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~~--------------~~~~~~-L~~ll~-~~~~~v~~~al~~L~~l  397 (488)
                      +.-..|+..|+.+..+++.        .....+.+              ...+.. +..++. ...+..+..|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6777888888888775321        00011110              111222 333343 23345667778888877


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 011316          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~  452 (488)
                      +.....            +.....+.|++..+.++. .+...+++..+..++....
T Consensus       653 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  653 LEQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HHcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            766553            467778888888888873 3336667777777776543

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=94.98  E-value=5.7  Score=41.78  Aligned_cols=132  Identities=13%  Similarity=0.121  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011316          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~  377 (488)
                      +.++..+..++++++.......     ...+|.|++-|... ...+|.+...+++.++..-+     .+.+ ..++.+..
T Consensus       945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTD-RYIPMIAA 1013 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHH-HhhHHHHH
Confidence            4577888888999987644432     23688888888765 56788888888888775321     1222 47899999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316          378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      .|.++++-+|.+++-.|.+++..+---           |+..+    .++-+.. +-+.+++++..|..++......++.
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vK-----------w~G~L----f~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVK-----------WNGEL----FIRFMLA-LLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhhhhh-----------cchhh----HHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCc
Confidence            999999999999999999998654311           11111    0122222 3445788999998888887776543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.93  E-value=0.18  Score=35.08  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .+.+++++++++. ++.....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            5689999999988 4555555667799999999998776889999999999999875 55455444443

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.92  Score=45.53  Aligned_cols=231  Identities=14%  Similarity=0.068  Sum_probs=134.6

Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      ++.++++.++..-.......+-...-..|+.+....   .....+...-.-|.+.+-|+-.|..|+..|+..+.+.-.-.
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            355667666655433232233333334444444432   11122222334456667788889999999999999877321


Q ss_pred             -c----hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC----ChHHHHHHhcccchhhHH
Q 011316          232 -N----DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIK  302 (488)
Q Consensus       232 -~----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~~~~L~~lL~~~~~~~v~  302 (488)
                       +    +.+..+++ +-...+.++|.++.|.+|..|..-++.+.+..    -.++...    ++..+..-+......+||
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence             1    22333444 44677899999999999999887776665522    1222222    233333333333256788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316          303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~  382 (488)
                      ......|..+... +. .-.+++ .++|.+-..+.++...||..+...|..+-...    ...+..--..+.++..|..+
T Consensus       281 ~svf~gl~~~l~n-p~-sh~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d  353 (1005)
T KOG1949|consen  281 CSVFKGLPMILDN-PL-SHPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD  353 (1005)
T ss_pred             hhHhcCcHHHHcC-cc-chhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence            8888888877764 22 112233 25677777888888999998888888774321    12222223456666667776


Q ss_pred             CHHHHHHHHHHHHHH
Q 011316          383 DPRIVTVCLEGLENI  397 (488)
Q Consensus       383 ~~~v~~~al~~L~~l  397 (488)
                      +.++....+..+-+.
T Consensus       354 ~~~v~rr~~~li~~s  368 (1005)
T KOG1949|consen  354 SRPVSRRLVSLIFNS  368 (1005)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            666655555554444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.63  E-value=0.9  Score=47.20  Aligned_cols=198  Identities=16%  Similarity=0.121  Sum_probs=107.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG----  145 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~----  145 (488)
                      .+..+.+++.+.. .. -..|...+..+.........     ..+..+..++++    .++.++..|+-+++.+..    
T Consensus       396 av~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK-LT-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT--S--HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CC-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3555666666644 11 22244445444432212222     235666666664    567888888888887752    


Q ss_pred             CC-----chhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---Ch
Q 011316          146 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD  214 (488)
Q Consensus       146 ~~-----~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~  214 (488)
                      ..     ............++.+...+.   ...+..-+..++.+|+|+...          ..++.+..++...   ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence            21     000011122235666666664   234557788899999998643          5778888888765   67


Q ss_pred             hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      .++..|++++..+....++..        .+.++.++.+  .++++|..|+..|...   +|..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            889999999998876655332        2556666654  4567888887666442   2322       235567777


Q ss_pred             hcccchhhHHHHHH
Q 011316          293 LTQNYKKSIKKEAC  306 (488)
Q Consensus       293 L~~~~~~~v~~~a~  306 (488)
                      +....+..|.....
T Consensus       601 l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  601 LWNEPSNQVASFVY  614 (618)
T ss_dssp             HTT-S-HHHHHHHH
T ss_pred             HhhCchHHHHHHHH
Confidence            76654566655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.50  E-value=8.5  Score=44.50  Aligned_cols=265  Identities=14%  Similarity=0.095  Sum_probs=141.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCC
Q 011316           40 WSDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA  117 (488)
Q Consensus        40 ~s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  117 (488)
                      .+.+..+...|+..|++++.+-  ..+....-.+..++..+..++.+..+.++++..++|+.++.....   . -+..| 
T Consensus      1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~-nIkSG- 1221 (1780)
T PLN03076       1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---N-NVKSG- 1221 (1780)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---h-hhhcC-
Confidence            3456788888999888876532  112122223456788888888766658999999999999876222   1 22333 


Q ss_pred             HHHHHHhhC----CCCHHHHHHHHHHHhhhhCCCch-h----HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh--
Q 011316          118 VPIFVRLLS----SPTDDVREQAVWALGNVAGDSPK-C----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF--  186 (488)
Q Consensus       118 i~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l--  186 (488)
                      .+.+..++.    +.++.+.+.|..++..++.+.-. .    ...+.  ..+..+.....+..+..+--.|+..|+.+  
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence            555555554    46788888999988887643211 0    01111  13334444443333344444455445433  


Q ss_pred             --hcCCC-----------------------C------CChhhhhchHHHHH---HhhccCChhHHHHHHHHHHHhccCCc
Q 011316          187 --CRGKP-----------------------Q------PLFEQTRPALPALE---RLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       187 --~~~~~-----------------------~------~~~~~~~~~~~~L~---~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                        +....                       .      .........+|.|.   .+..++..+||..|+.+|..+.....
T Consensus      1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence              11100                       0      00001122334333   44556789999999999987774322


Q ss_pred             h-----hHHHHHHhCCHHHHHHhcCCC------------------C-c----chHhH---HHHHHhHhhcCCchhhHHHh
Q 011316          233 D-----KIQAVIEAGVCPRLVELLRHP------------------S-P----SVLIP---ALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       233 ~-----~~~~~~~~~~l~~L~~lL~~~------------------~-~----~v~~~---a~~~L~~l~~~~~~~~~~~~  281 (488)
                      .     .-..+++ +++-.++..++..                  + .    .....   |+..+..+....-.....++
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1     2222333 3444444443210                  0 0    01233   33444444332222222222


Q ss_pred             hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      + +++..|...+..+ +..+-+.+..+|.++..
T Consensus      1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            2 4556666666666 78888888888888876

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.50  E-value=4.8  Score=38.77  Aligned_cols=132  Identities=12%  Similarity=0.091  Sum_probs=92.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCc--cHHHHHHcCCHHHHHHhhcCCC----Chh--HHHHHHHHHHHhcC
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP--PINEVIQSGVVPRFIEFLSRDD----FPQ--LQFEAAWALTNIAS  103 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~i~~L~~lL~~~~----~~~--v~~~a~~~L~~l~~  103 (488)
                      ......+++.++.+.|..|+-...++..+.+-.  ..+.+.+.-+++.+-++|.+.+    .|+  .+.-++.+|...|.
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            334667777788888999999999988765322  2344667778888888886543    233  45556677888887


Q ss_pred             CCchhh--HHHHhCCCHHHHHHhhCC-CCH------HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316          104 GTSENT--RVVIDHGAVPIFVRLLSS-PTD------DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus       104 ~~~~~~--~~~~~~g~i~~L~~lL~~-~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  167 (488)
                       .|+..  ..++  +-||.|+.+++. .++      .+.+.+..+|..++...+. ...++..|.++.+.+.-
T Consensus        93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMY  161 (698)
T ss_pred             -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHH
Confidence             55432  2333  458999998875 333      3788899999999988665 56667789999888654

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.39  E-value=3.3  Score=39.58  Aligned_cols=147  Identities=14%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             HHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc----c-cchhhHHHHHHHHHHH
Q 011316          238 VIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----Q-NYKKSIKKEACWTISN  311 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~----~-~~~~~v~~~a~~~L~n  311 (488)
                      +.+.+-.+.+-.-++.. ....|.+|+..+..++...+.....++    ...+..++.    + ..+++-|..|+..++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            55556556665555543 356777899999999875444333222    233344443    1 2267788899999999


Q ss_pred             HhcCCHH------------HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011316          312 ITAGNVN------------QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  379 (488)
Q Consensus       312 l~~~~~~------------~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll  379 (488)
                      ++.....            ....++...++|.|. --.+..+-++-.|++.+..+-..-+++....     +++.+++.|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence            9874211            345555666778776 2223367788999999999977665544333     799999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 011316          380 NCPDPRIVTVCLEGL  394 (488)
Q Consensus       380 ~~~~~~v~~~al~~L  394 (488)
                      .+++.-|...|..++
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            998888777766543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.36  E-value=1.2  Score=37.59  Aligned_cols=142  Identities=17%  Similarity=0.147  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhcCC-Cch----hhHHHHh------CCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316           90 LQFEAAWALTNIASG-TSE----NTRVVID------HGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  157 (488)
Q Consensus        90 v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i~~L-~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  157 (488)
                      +|..|+.+|..++.. ++.    +...++-      ...-+.| .-++.++++.+|..|+.++..+..+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            677888888888774 211    1111221      1123334 445677899999999999999876543221111111


Q ss_pred             C-------------------ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh--hhhhchHHHHHHhhccCChhH
Q 011316          158 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIHSNDDEV  216 (488)
Q Consensus       158 ~-------------------~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~v  216 (488)
                      .                   .-..|+..+....+..+....+.++..+....|....  .....++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   1223455555566788888999999999988754433  345667777778888999999


Q ss_pred             HHHHHHHHHHhccCC
Q 011316          217 LTDACWALSYLSDGT  231 (488)
Q Consensus       217 ~~~al~~L~~l~~~~  231 (488)
                      +..++.+++.+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999887654

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.34  E-value=0.62  Score=44.38  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=84.9

Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHH
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSY  226 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~  226 (488)
                      .+.+.+-.+.+=+-+..+...+-++.|+..+..+++...........   ..+..++.      +.++.-+..|+..++.
T Consensus       205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            34444555555555533334566778888999998653211111222   22333333      3467888889999999


Q ss_pred             hccCCch------------hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc
Q 011316          227 LSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT  294 (488)
Q Consensus       227 l~~~~~~------------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~  294 (488)
                      ++.....            ....+...-++|-|. --.+..|-++..|++.+..+-..-+.  ..+  .++++.++..|.
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~  356 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ  356 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence            8865421            123344444555554 22234577888888888777654332  112  258999999999


Q ss_pred             ccchhhHHHHHHHHH
Q 011316          295 QNYKKSIKKEACWTI  309 (488)
Q Consensus       295 ~~~~~~v~~~a~~~L  309 (488)
                      ++ +.-|+..|+.++
T Consensus       357 ~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  357 SS-SYVVHTYAAIAI  370 (370)
T ss_dssp             SS--HHHHHHHHHHH
T ss_pred             CC-CcchhhhhhhhC
Confidence            99 888998888765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.30  E-value=1.1  Score=37.66  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=90.0

Q ss_pred             hHhHHHHHHhHhhcCCchhh-----HHHh-h-----C-CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316          258 VLIPALRTVGNIVTGDDMQT-----QCII-N-----H-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~-----~~~~-~-----~-~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      +|..|+.+|..++...+...     ..++ +     . .-...+.-++.++ ++++|..|+.++..+..+.......--+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            67788888888887522110     0111 1     1 2334455566777 9999999999999998875443332221


Q ss_pred             c-------------------CChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316          326 A-------------------GIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       326 ~-------------------~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  385 (488)
                      .                   .+-..|+..++.+ +..+....+.++..+..+..-...+.=.-..++..+..++.+.|+.
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            1                   1234455556554 6778888999999998766433222100112455555567789999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 011316          386 IVTVCLEGLENILKAGE  402 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~  402 (488)
                      ++..++.+++.++....
T Consensus       161 v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999988876543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.19  E-value=5.1  Score=37.78  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=111.9

Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhc-CCchhhHHHhhC-C-ChHHHHHHhcccc----h--------hhHHHHHHHH
Q 011316          244 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT  308 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~~~~L~~lL~~~~----~--------~~v~~~a~~~  308 (488)
                      +..+...|.+..+.+...++..|..++. ......+.++.. + -.+.+.+++....    .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888988888888999999999999 555666666532 1 1234444442210    1        2788888877


Q ss_pred             HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHH-hccCC--CHHHHHHHHHCCChHHHHhhcCCCC
Q 011316          309 ISNITA-GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN-ATSGG--SNEQIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       309 L~nl~~-~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~  383 (488)
                      +..+.. +++..+..+++ .+.+..+.+-+..+++++....+.+|.. +....  .+...-.+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666665 66777777664 6678899999988888999999999985 44322  2344455556678899999888777


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 011316          384 P----RIVTVCLEGLENILKA  400 (488)
Q Consensus       384 ~----~v~~~al~~L~~l~~~  400 (488)
                      +    .+...+-+.|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    8888888888888753

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.17  E-value=3.9  Score=36.34  Aligned_cols=138  Identities=16%  Similarity=0.090  Sum_probs=91.0

Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011316          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  240 (488)
Q Consensus       161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  240 (488)
                      +.++..+.+..+++.+...+.+|..++..+   . .....++..+..+...+......-+.+.+..+...++...     
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence            445554667789999999999999999875   1 3445667777777777777776677777777776654322     


Q ss_pred             hCCHHHHHHh-----c---CC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHH
Q 011316          241 AGVCPRLVEL-----L---RH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTI  309 (488)
Q Consensus       241 ~~~l~~L~~l-----L---~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L  309 (488)
                       +.+..++..     .   .+  ...+.......++..+|...+....     .+++.+..++ ++. ++.++..++.++
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence             222322222     1   11  1233444445677788876665322     4577788888 666 788888888899


Q ss_pred             HHHhc
Q 011316          310 SNITA  314 (488)
Q Consensus       310 ~nl~~  314 (488)
                      ..++.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            88884

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.02  E-value=0.53  Score=40.09  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             cCChhHHHHHHHHHHHhccCCchhHHHHHH----------------hCCHHHHHHhcCC------CCcchHhHHHHHHhH
Q 011316          211 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGN  268 (488)
Q Consensus       211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~------~~~~v~~~a~~~L~~  268 (488)
                      +++......++..|.|++....... .+++                ...+..|+..+..      +...-......++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            3455566677777888876554332 1221                1345666666544      234455677889999


Q ss_pred             hhcCCchhhHHHhhC--CC--hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhcC
Q 011316          269 IVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLNA  339 (488)
Q Consensus       269 l~~~~~~~~~~~~~~--~~--~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~ll~~~  339 (488)
                      ++. .++.++.+++.  +.  +..|+..+.+. +..-|..++.+|.|++.....+ ..++.   .+++|.|+--+..+
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCC
Confidence            998 45566666643  33  77888888888 8777889999999999864443 33333   35677666665543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.95  E-value=1.6  Score=44.15  Aligned_cols=171  Identities=16%  Similarity=0.125  Sum_probs=108.8

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+|.|...++ +...+..+.-+..+--+..+.    -..-+.+.++|.|..-+++.+ ..+|..++..+..++..-+  
T Consensus       349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt----~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD--  421 (700)
T KOG2137|consen  349 KMLPALKPIYSASDPKQALLFILENMDLLKEKT----PPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESID--  421 (700)
T ss_pred             hhhHHHHHHhccCCcccchhhHHhhHHHHHhhC----ChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhcc--
Confidence            45566666665 334444433333333333322    223345678899999999988 8999999999999987222  


Q ss_pred             hHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                       -..++.-++|.+-.+ +.+.+..++.+++.+++.++..    .+...-...+.++.+.. +..++.+....+.+..++.
T Consensus       422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHH
Confidence             344555667888775 4457899999999999999722    12221112344555555 5667888777777777776


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCC
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSND  213 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~  213 (488)
                      ...+.........++|.++.+...+.
T Consensus       496 ~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  496 LIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhcccceeeehhhhhhhhhhhhhccc
Confidence            65543344555778888887776553

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=93.92  E-value=4  Score=41.67  Aligned_cols=117  Identities=13%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             CcchhhhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHH
Q 011316            1 MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE   80 (488)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~   80 (488)
                      |||+|=+|...+.+               +-|..|...-...=+.++.+++..+..+++.. ++.-     ...+..+++
T Consensus       290 l~WyfE~~LK~ly~---------------rfievLe~lS~D~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVN  348 (988)
T KOG2038|consen  290 LMWYFEHELKILYF---------------RFIEVLEELSKDPLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVN  348 (988)
T ss_pred             hHHHHHHHHHHHHH---------------HHHHHHHHHccccHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHH
Confidence            68999999775443               22333443334455789999999999999875 3332     345678889


Q ss_pred             hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC--HHHHHHHHHHHhhhh
Q 011316           81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--DDVREQAVWALGNVA  144 (488)
Q Consensus        81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~~~~~a~~~L~~l~  144 (488)
                      -|.+++ ..+...|...|.+|....|..+..+     +..+.+++-.++  ......|+..|..+.
T Consensus       349 KlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~  408 (988)
T KOG2038|consen  349 KLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDEIERLAFRPNVSERAHYYAVIFLNQMK  408 (988)
T ss_pred             hcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence            999998 6899999999999988788776654     455556554433  334445666666554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.91  E-value=1  Score=38.49  Aligned_cols=110  Identities=10%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHhhh
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGNV  143 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~~~~~a~~~L~~l  143 (488)
                      ....+++.+.+.....   ..+..|..... ........+++.|++..|+.+|..         .+......++.++..+
T Consensus        67 ~p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            4556677776665221   22333333222 234667788888999999998753         3457888999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       144 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      .....+....+...+.+..++..+ .+.+..++..++..|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            877666555555567788888888 7888999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.86  E-value=4.7  Score=40.95  Aligned_cols=175  Identities=13%  Similarity=0.105  Sum_probs=105.4

Q ss_pred             hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316          197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      .....+|.|...++.. ...+....+.-+.-|...-+   ..-+...+++.|...+++.+..++..++..+..++..-+ 
T Consensus       346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-  421 (700)
T KOG2137|consen  346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-  421 (700)
T ss_pred             hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence            3455667777777642 22222222222222222111   113334788889999999999999999999999887544 


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                        -..+...+++.+..+.....+..++..++.+++.++..    .+...-...+..+.+.++..++.+......+..++.
T Consensus       422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence              23345567788877654433788999999999988731    111111124555666677778888888777777776


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011316          356 SGGSNEQIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~  383 (488)
                      ..... . ..+....+++.++-+...+.
T Consensus       496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  496 LIIYS-G-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence            54321 1 22233356777776655444

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.86  E-value=1.9  Score=42.18  Aligned_cols=157  Identities=13%  Similarity=0.123  Sum_probs=115.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCC
Q 011316          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL  194 (488)
Q Consensus       118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~  194 (488)
                      ...+...+.+++..-+..++..+..++.+.. +...++....+..+.+++.+..   ..++....+.+++.+....-...
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3556677777777777778888888877654 6677888888999999885433   45677778888887776654334


Q ss_pred             hhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011316          195 FEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       195 ~~~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  272 (488)
                      ......++.....+...  .+..+...|+..+-++.-.++...+.+.+.--+..++..+...+..++..|+..+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            34444555555555532  3677888999999999888877777788878899999999998888888888888877765


Q ss_pred             Cch
Q 011316          273 DDM  275 (488)
Q Consensus       273 ~~~  275 (488)
                      .++
T Consensus       244 a~~  246 (713)
T KOG2999|consen  244 APD  246 (713)
T ss_pred             CCh
Confidence            443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=9.2  Score=39.42  Aligned_cols=319  Identities=12%  Similarity=0.083  Sum_probs=173.5

Q ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHHhccCC--CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           33 PAMVAGVWSD-DRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        33 ~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++++|+.. |..+++.+++.+.-.+.+-+  .+..... -++....+.++++.-..-+.|...+..++.+.....+..
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~-lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I  607 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY-LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI  607 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            3567777765 77888899999888776431  1111212 245666677777665435677777777777766333332


Q ss_pred             HHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCC----CchhHHHHHhcCChHHHHHHhcccccHh---HHHHHH
Q 011316          110 RVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGD----SPKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNAT  180 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~l~~~l~~~~~~~---v~~~a~  180 (488)
                      .... ..++..+-.+-+  ++.+-+|...+.+|.|+...    +..+.      .++-+++++-.+-++++   ..+.+.
T Consensus       608 ~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~EDgm  680 (978)
T KOG1993|consen  608 APYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLEDGM  680 (978)
T ss_pred             hHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhhHH
Confidence            2111 112222222222  25677888888888888631    22211      12334444442222222   233333


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh-ccCCchhHHHHHHhCCHHHHHHhcCCCCcchH
Q 011316          181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL-SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL  259 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l-~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~  259 (488)
                      ..-.....+. ..-....-+.+|.+...+......++ .++.++..- .-.+....+ -...|++..+..++.+-..+-.
T Consensus       681 eLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl  757 (978)
T KOG1993|consen  681 ELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGL  757 (978)
T ss_pred             HHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHH
Confidence            3333333332 22222335677777777765433332 233333322 222222222 2223788888888887666677


Q ss_pred             hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHH---
Q 011316          260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVN---  334 (488)
Q Consensus       260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~---  334 (488)
                      ...+.++..+...++ ........++++.+..-+ .....+.+...-..+++.++..+++....+++ ..-.+.++.   
T Consensus       758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li  836 (978)
T KOG1993|consen  758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLI  836 (978)
T ss_pred             HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHH
Confidence            788888888887655 333344557777766543 33336677777777888887777777666554 222333332   


Q ss_pred             -----HHhc-CChhHHHHHHHHHHHhccCCCHHHH
Q 011316          335 -----LLLN-AEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       335 -----ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                           +..+ .+++-|+--+-+++.+...+.+...
T Consensus       837 ~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~il  871 (978)
T KOG1993|consen  837 GNWILLFDHINHPKDRKLNTLALSSLLRTNNPDIL  871 (978)
T ss_pred             HHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence                 2211 2677777777788888776554443

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.72  E-value=3.9  Score=45.14  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011316          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  321 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  321 (488)
                      +++|.|..-|.+++..+|..|...++.+......+.. --...+....+.-+.+. +..+|.+++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889998889999999999999999999885543322 00123455566666677 889999999999888776555433


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      ...   ....+..  .+.|++++.....++....   -......+... .+..+.+.+.+....||..|+..|..+...
T Consensus       337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~---v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRE--RDLDEDVRVRTQVVIVACD---VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHh--hcCChhhhheeeEEEEEee---hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            221   1222222  2234444433322222111   11222222333 566666677788899999999988888763

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.69  E-value=0.29  Score=35.97  Aligned_cols=85  Identities=15%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+...+..+.++.+.+|-.++..|++++...+   ....-..+++..+...|++++ +-+-..|+.+|..++...++  
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~--   76 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD--   76 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH--
Confidence            345678889999999999999999999998753   122223567888889999999 89999999999999984443  


Q ss_pred             HHHHhCCCHHHHHHhhC
Q 011316          110 RVVIDHGAVPIFVRLLS  126 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~  126 (488)
                            .+++.|++...
T Consensus        77 ------~vl~~L~~~y~   87 (92)
T PF10363_consen   77 ------EVLPILLDEYA   87 (92)
T ss_pred             ------HHHHHHHHHHh
Confidence                  23555555443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.44  E-value=0.78  Score=39.22  Aligned_cols=99  Identities=15%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011316          304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  378 (488)
Q Consensus       304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l  378 (488)
                      .|...|..++++ ++....+++..+--.+...+...     ...+|..++.+++.+..++++...+++....+++.+.++
T Consensus       119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            444455555555 77777777765544445555432     456889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316          379 LNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       379 l~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      ++.+.+--+..++.++..++..+..
T Consensus       198 me~gSElSktvaifI~qkil~dDvG  222 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVG  222 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchh
Confidence            9988877777788888887765543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.34  E-value=5.3  Score=39.09  Aligned_cols=277  Identities=10%  Similarity=0.080  Sum_probs=125.8

Q ss_pred             CHHHHHHhhcC---CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCch
Q 011316           74 VVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        74 ~i~~L~~lL~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      .+..|+.++..   ..++.+-....+++..+-.........+++ ..+..+....++ .+|..-.....+++.+.+....
T Consensus        27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~  105 (435)
T PF03378_consen   27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE  105 (435)
T ss_dssp             HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence            34455555544   222556666666665555544444444432 233444444455 5677777777777766543221


Q ss_pred             hHH---HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011316          150 CRD---LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALS  225 (488)
Q Consensus       150 ~~~---~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~  225 (488)
                      ...   .-.+...++.+...| +..-.+..-++...++.+.+..+ ..........++.++.-.--....-.-...+.|.
T Consensus       106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~  184 (435)
T PF03378_consen  106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQ  184 (435)
T ss_dssp             GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHH
Confidence            111   123444566677777 44444566667777777766543 1111222333333332111111111223333344


Q ss_pred             HhccCCchhHHHHHHh----CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccchhh
Q 011316          226 YLSDGTNDKIQAVIEA----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       226 ~l~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ......+...   ...    +++..+-+++.+...  -..+...|..+...-+.. ....+. .++..++.-|++....+
T Consensus       185 a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~k  258 (435)
T PF03378_consen  185 AYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEK  258 (435)
T ss_dssp             HHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HH
T ss_pred             HHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHH
Confidence            3333322221   111    233444455555432  245667777776655432 222222 45666666666554666


Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHH--Hh---c-CChhHHHHHHHHHHHhccCC
Q 011316          301 IKKEACWTISNITA-GNVNQIQAIIE---AGIIGPLVNL--LL---N-AEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       301 v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~l~~L~~l--l~---~-~~~~v~~~a~~aL~~l~~~~  358 (488)
                      .++..+..++.++. .+++..-..++   .|++..++.-  +.   . ..+.=|+.++-++.++....
T Consensus       259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            66666666665554 34444444443   4444444442  11   1 12334566777777766433

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.18  E-value=6.6  Score=38.45  Aligned_cols=263  Identities=11%  Similarity=0.091  Sum_probs=121.4

Q ss_pred             CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC----CCCCChhhhhchHH
Q 011316          128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALP  203 (488)
Q Consensus       128 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~  203 (488)
                      +++-+-+..++++..+-..-......++.. .+..+.....+.+++..-.....+++.+.+.    ++.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            466677777777666554433333333221 2222222332334566555555555555443    23333356678889


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHH
Q 011316          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCI  280 (488)
Q Consensus       204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~  280 (488)
                      .+..+|+.+-.+..-++...++.+.+..+.  ..+-+ .....+-.++...-++   -.-...+.|..+....+...   
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p~-~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLPD-AYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S--T-TTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcH-HHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence            999999888788888888888888755430  10111 1112222222221111   11233445555444333222   


Q ss_pred             hhC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHh
Q 011316          281 INH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA  354 (488)
Q Consensus       281 ~~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l  354 (488)
                      ...    +++..+-+++.++ ..  -..+...|..+...- .+..+..+. .++..++.-|++. .++.++.-+..++.+
T Consensus       195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~  270 (435)
T PF03378_consen  195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLF  270 (435)
T ss_dssp             ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence            222    3444455666665 22  245677777776632 333333333 3566666666654 556666666666666


Q ss_pred             ccCCCHHHHHHHHH---CCChHHHHhhc------CCCCHHHHHHHHHHHHHHHHhh
Q 011316          355 TSGGSNEQIKFLVS---QGCIKPLCDLL------NCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       355 ~~~~~~~~~~~l~~---~~~~~~L~~ll------~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +...+++..-..++   .|....+..-+      +-..+.-++.+.-++.+++...
T Consensus       271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            54444444444333   23333333311      1122333555555666665433

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.13  E-value=3.3  Score=35.29  Aligned_cols=146  Identities=18%  Similarity=0.171  Sum_probs=92.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      =++.+++...+++..++..|+..+..++...--.+.      ..+|.++.+..+++ +.++..|...+..+.+..+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            467788888999999999999999998875411111      36899999999988 99999999999999886665544


Q ss_pred             HHHhCCCHHHHHHhh---CCCCH-HH---HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-------cHhHH
Q 011316          111 VVIDHGAVPIFVRLL---SSPTD-DV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSML  176 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL---~~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~v~  176 (488)
                      .-...| +..-..+-   ..+.. ..   ....+..+..+...+...|..+     +..+++.+..+.       .+.-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            443334 32222222   11111 11   4455666667766555555544     456666663221       23334


Q ss_pred             HHHHHHHHHhhcC
Q 011316          177 RNATWTLSNFCRG  189 (488)
Q Consensus       177 ~~a~~~L~~l~~~  189 (488)
                      ....++..+++.-
T Consensus       156 ~~~~Fla~nLA~l  168 (187)
T PF12830_consen  156 DFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHhcC
Confidence            4555555555544

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.03  E-value=11  Score=43.77  Aligned_cols=267  Identities=9%  Similarity=0.103  Sum_probs=146.1

Q ss_pred             CCCHHHHHHHHHHHhhhhCCC---chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011316          127 SPTDDVREQAVWALGNVAGDS---PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  203 (488)
Q Consensus       127 ~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  203 (488)
                      +.+..++..|+..|..++..-   ++....-.....+.++...+....+.++++.++.++.++......    ....+.+
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence            345678888888887776321   111111122346778888786777889999999999988765421    1122334


Q ss_pred             HHHHhh----ccCChhHHHHHHHHHHHhccCCchhHH----HHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCC-
Q 011316          204 ALERLI----HSNDDEVLTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGD-  273 (488)
Q Consensus       204 ~L~~ll----~~~~~~v~~~al~~L~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-  273 (488)
                      .+..++    ...++.+...+..++..+....-....    ..+ ..++..+..+.... +.++-..|+..|++++..- 
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence            444444    355788888888888876643111000    001 13445555555443 3566667777777552110 


Q ss_pred             --c------------------------hhhHH-----HhhCCChHHH---HHHhcccchhhHHHHHHHHHHHHhcC----
Q 011316          274 --D------------------------MQTQC-----IINHQALPCL---LDLLTQNYKKSIKKEACWTISNITAG----  315 (488)
Q Consensus       274 --~------------------------~~~~~-----~~~~~~~~~L---~~lL~~~~~~~v~~~a~~~L~nl~~~----  315 (488)
                        +                        .....     .....+++.|   .++..++ +.+||..|+.+|-.+...    
T Consensus      1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence              0                        00000     0001233333   3334555 899999999998877752    


Q ss_pred             -CHHHHHHHHHcCChHHHHHHHhcC------------------C-hh----HHHHHHHHHHHhccCCC--HHHHHHHHHC
Q 011316          316 -NVNQIQAIIEAGIIGPLVNLLLNA------------------E-FE----IKKEAAWAISNATSGGS--NEQIKFLVSQ  369 (488)
Q Consensus       316 -~~~~~~~l~~~~~l~~L~~ll~~~------------------~-~~----v~~~a~~aL~~l~~~~~--~~~~~~l~~~  369 (488)
                       +++....++. +++-.++..++..                  + .+    +...+..+|..++.--.  -+....++. 
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence             3445555555 4555555555421                  0 00    22333334444332110  011222222 


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          370 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       370 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +++..|..++..++..+......+|.+++...
T Consensus      1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            56777777778888888888888998887543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.02  E-value=0.47  Score=42.70  Aligned_cols=142  Identities=14%  Similarity=0.212  Sum_probs=96.6

Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011316          244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                      +...+..|.+.++.....++..+..++...++.....+. .++-.+++-+++. ...|-+.|+.+++.+...-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888888989999999888765544443333 3566677777888 88899999999999987433333332


Q ss_pred             HHcCChHHHHH-HHhcC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          324 IEAGIIGPLVN-LLLNA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       324 ~~~~~l~~L~~-ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                           +..++. ++...   +.-++..|-.+|..+..+..+..        ++..|...+.+.++.++..+.-++.+...
T Consensus       168 -----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 -----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             -----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccce
Confidence                 222332 33332   45688999999999987765532        46666777788888888777666555543


Q ss_pred             h
Q 011316          400 A  400 (488)
Q Consensus       400 ~  400 (488)
                      .
T Consensus       235 r  235 (334)
T KOG2933|consen  235 R  235 (334)
T ss_pred             e
Confidence            3

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=13  Score=38.56  Aligned_cols=295  Identities=13%  Similarity=0.118  Sum_probs=135.3

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  167 (488)
                      +.+...|+..|.+++. .+.....+...+++..+.+..--++-.+|..               -+.+.+.+.++.+=+.+
T Consensus       307 D~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e---------------DeElFED~pleYiRRDl  370 (960)
T KOG1992|consen  307 DYLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVVLPNLILREE---------------DEELFEDNPLEYIRRDL  370 (960)
T ss_pred             HHHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcccccccchh---------------hHHHhccCHHHHHHHhc
Confidence            4455666777777776 5555555555555555555432222222221               12333444455555555


Q ss_pred             cccccHhH-HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-c--CChhHHHHHHHHHHHhccCCchh---------
Q 011316          168 NEHAKLSM-LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTDACWALSYLSDGTNDK---------  234 (488)
Q Consensus       168 ~~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~--~~~~v~~~al~~L~~l~~~~~~~---------  234 (488)
                       .++|.+. |+.|+..+..|+...+..........+..++.-.. +  .++.-...++.....++......         
T Consensus       371 -EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~  449 (960)
T KOG1992|consen  371 -EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE  449 (960)
T ss_pred             -ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccc
Confidence             5555554 55677777888877644444344444444443222 2  23333333333333332110000         


Q ss_pred             ----HH------------------HHH-------------------HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          235 ----IQ------------------AVI-------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       235 ----~~------------------~~~-------------------~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                          ..                  .++                   -...++.++..|..++..+...|..++-.+..-.
T Consensus       450 lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr  529 (960)
T KOG1992|consen  450 LVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR  529 (960)
T ss_pred             cccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence                00                  000                   0125677777777777777777777776665433


Q ss_pred             chhhHHHhhC-CChH----HHH---HHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hcC-C
Q 011316          274 DMQTQCIINH-QALP----CLL---DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LNA-E  340 (488)
Q Consensus       274 ~~~~~~~~~~-~~~~----~L~---~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll----~~~-~  340 (488)
                      +.....++.. .+.+    .+.   +.++.+ ...--...+.++..+..-.++.+..... ..+..|.+++    +++ +
T Consensus       530 e~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~~~EneylmKaImRii~i~~~~i~p~~~-~~l~~Lteiv~~v~KNPs~  607 (960)
T KOG1992|consen  530 ENSNAKIFGAEDIAPFVEILLTNLFKALSLP-GKAENEYLMKAIMRIISILQSAIIPHAP-ELLRQLTEIVEEVSKNPSN  607 (960)
T ss_pred             cCccccccchhhcchHHHHHHHHHHHhccCC-cccccHHHHHHHHHHHHhCHHhhhhhhh-HHHHHHHHHHHHHhcCCCC
Confidence            3311122211 1221    122   222222 1111223344444433322332211111 1233333333    233 3


Q ss_pred             hhH---HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          341 FEI---KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       341 ~~v---~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      +..   --++..++.+.+...++.....+ +..+++.+..++..+-.+..-.++..+..++....
T Consensus       608 P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~  671 (960)
T KOG1992|consen  608 PQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS  671 (960)
T ss_pred             chhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            322   23344444444444444433333 33566777777776667777777777777766544

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.95  Score=40.83  Aligned_cols=145  Identities=18%  Similarity=0.196  Sum_probs=101.7

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      ...+...+..|.+.++......+..+..++...++.....+. .++-.+++-+++....|...|+.+++.+.........
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555677788889999999999999998766544443443 5677778888888889999999999999875554444


Q ss_pred             HHhhCCChHHHHH-Hhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          279 CIINHQALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       279 ~~~~~~~~~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ..     ++.++. ++...  .+.-++..|-.+|..+..+-...       .+++.|+..+++.++.++..++.+..+..
T Consensus       166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            32     233333 33221  14568888999998887742221       25777888888888889888887777665


Q ss_pred             c
Q 011316          356 S  356 (488)
Q Consensus       356 ~  356 (488)
                      .
T Consensus       234 ~  234 (334)
T KOG2933|consen  234 I  234 (334)
T ss_pred             e
Confidence            4

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=92.85  E-value=1.2  Score=36.88  Aligned_cols=146  Identities=10%  Similarity=0.069  Sum_probs=85.2

Q ss_pred             hchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh
Q 011316          199 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  277 (488)
Q Consensus       199 ~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  277 (488)
                      ...++.+..+++++ ++.++..++++++.+..-++...+.+....  +.-  .-...........+... .....+    
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~~-~~~~~~----   79 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPMM-GISPSS----   79 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhhc-cCCCch----
Confidence            56778888999876 699999999999999988776544222111  100  00111111222222111 111112    


Q ss_pred             HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ......-++..|+.+|+++.-..-...++.++.++... .......+ . .++|.+++.+...+...++....-|+.+.
T Consensus        80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~-~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-P-QVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-H-HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            22233346677888888774444455677777776642 12222222 2 38999999999877788888777777765

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.80  E-value=0.64  Score=39.60  Aligned_cols=77  Identities=10%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             CCHHHHHHhhcC-----CCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CC--HHHHHHhhCCCCHHHHHHHHHHHhhh
Q 011316           73 GVVPRFIEFLSR-----DDFPQLQFEAAWALTNIASGTSENTRVVIDH--GA--VPIFVRLLSSPTDDVREQAVWALGNV  143 (488)
Q Consensus        73 ~~i~~L~~lL~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~--i~~L~~lL~~~~~~~~~~a~~~L~~l  143 (488)
                      ..+..|++.+..     .+...-....+.+|.|++. .++.|..+.+.  +.  +..|+.++++.+..-|..++.+|.|+
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc  130 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC  130 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence            456677777654     1213455677889999999 89999999855  34  78888888888888899999999999


Q ss_pred             hCCCchh
Q 011316          144 AGDSPKC  150 (488)
Q Consensus       144 ~~~~~~~  150 (488)
                      |.+....
T Consensus       131 cFd~~~H  137 (192)
T PF04063_consen  131 CFDTDSH  137 (192)
T ss_pred             hccHhHH
Confidence            9887643

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.71  E-value=0.47  Score=34.91  Aligned_cols=77  Identities=10%  Similarity=0.086  Sum_probs=58.5

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  365 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  365 (488)
                      +...+..+.++ .+.+|..++..|..+.....  ....-..+++..+...++++|+-|-.+|..+|..++..........
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45567777888 88899999999999998544  1112224578888889999999999999999999997654434333

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=92.69  E-value=2  Score=50.40  Aligned_cols=268  Identities=14%  Similarity=0.164  Sum_probs=151.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCC--ccHHH-H-HHcCCHHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           39 VWSDDRNIQLDATTQFRKLLSIERS--PPINE-V-IQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        39 L~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~-~-~~~~~i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      +..++++++..+...+..++.....  +.... + .....+..+..+- .+++ +.++......+.      ...-....
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la  562 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA  562 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence            3468888888887777776654311  00000 0 0112233333332 2344 666655444443      23333455


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  193 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  193 (488)
                      +.+.+..+...++.+.-.++..+...+++++..+|...-..+....+..+-.+- .+.-..+...+..-+..+....+.-
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHH
Confidence            566677777778888889999999999999987663221111111111111111 1111111111111111111111112


Q ss_pred             ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcC
Q 011316          194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~  272 (488)
                      ........+..++..+.+++..+...++.+++.|+...........+ ..++.+.+.+.. .+..-+..++++++++...
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            22233455667777788888889999999999999776644554555 566666666644 4566788899999999885


Q ss_pred             CchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316          273 DDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       273 ~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      ......... ...++..+...+.......+|.++...++++...
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            543222222 2345666777777776778888888888877653

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.66  E-value=0.87  Score=37.92  Aligned_cols=115  Identities=19%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHH
Q 011316          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN  318 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~  318 (488)
                      .....+..+|.++++.-|..++..+...+..++...-.---...+..++.+|+.++...+++.++.++..+..   +.++
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5567788899998999999999999888876532111011235788899999888677889999999988875   4455


Q ss_pred             HHHHHHHc---CChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316          319 QIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       319 ~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      ..+.+...   ++++.++.+++.  ......++.+|..+....
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            55554432   345555555554  456677888888777543

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.52  E-value=0.65  Score=37.55  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=63.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~  449 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+.+.++.|..+... .+++|+++...++.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~  106 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR-----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK  106 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            5677777788899999999999999999877643           67777778888889998777 78999999999999


Q ss_pred             HhcCCCCC
Q 011316          450 TYWVEEDE  457 (488)
Q Consensus       450 ~~~~~~~~  457 (488)
                      .+......
T Consensus       107 ~W~~~f~~  114 (144)
T cd03568         107 QWADEFKN  114 (144)
T ss_pred             HHHHHhCC
Confidence            98776654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.30  E-value=2.1  Score=39.01  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=97.4

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC--CHHHHHHhhCC----CCHHHHHHHHHHHhhhhCCCc
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~  148 (488)
                      ...+.+.+.+-. ++.+.-++..+.-++. ++.....+...+  +...+..++..    ..+..+-.++++++|+..+..
T Consensus        65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~  142 (268)
T PF08324_consen   65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP  142 (268)
T ss_dssp             HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence            455556666554 4567778888877777 666666555443  24445544433    578889999999999987765


Q ss_pred             hhHHHHHhcC--ChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-c-CChhHHHH
Q 011316          149 KCRDLVLSNG--ALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH-S-NDDEVLTD  219 (488)
Q Consensus       149 ~~~~~~~~~~--~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~-~-~~~~v~~~  219 (488)
                      . +..+....  .+...+..+..+.   +..++..++..+.|++-..  ...........+..+.+.+. . .++++...
T Consensus       143 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  143 G-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             C-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             c-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            4 45544432  2333333332222   6788888888888887543  11122233345666777433 2 58999999


Q ss_pred             HHHHHHHhccCCchh
Q 011316          220 ACWALSYLSDGTNDK  234 (488)
Q Consensus       220 al~~L~~l~~~~~~~  234 (488)
                      ++-+++++...++..
T Consensus       222 ~LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  222 LLVALGTLLSSSDSA  236 (268)
T ss_dssp             HHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHhccChhH
Confidence            999999999665443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.29  E-value=5.8  Score=40.78  Aligned_cols=160  Identities=18%  Similarity=0.196  Sum_probs=95.1

Q ss_pred             CHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----CCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHHH
Q 011316          117 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSN  185 (488)
Q Consensus       117 ~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~v~~~a~~~L~~  185 (488)
                      .+..+..++.+    ..+.++..|+-+++.+..    +.+.+. .......++.+...+..   ..+...+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            35666677765    456788888888887752    222211 11112345566655532   2345556677888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhc-c--CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHh
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLI  260 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~-~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~  260 (488)
                      +...          ..++.+..++. +  ....++..|+++|..++...+...+        +.++.+..+  .++++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence            7654          35555666665 2  2467999999999988765543322        556666654  4577888


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHH
Q 011316          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  305 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a  305 (488)
                      .|+..|...   +|..       ..+..+...+....+..|+...
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv  569 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV  569 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence            887766442   2322       2355666666665456555443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.26  E-value=13  Score=36.97  Aligned_cols=106  Identities=20%  Similarity=0.294  Sum_probs=77.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+..+++.+.+++..+|..++..|+.+...  -..++...-+|.+..|.+-+-+.. +.+|..|+.+|+.+-.......
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChH
Confidence            6777888888999999999999999986543  344666677788888887777777 7999999999998876322221


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCC
Q 011316          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~  146 (488)
                      .     .+...|+..++. ++.++|+.|+   .|+..+
T Consensus       168 n-----~~~n~l~~~vqnDPS~EVRr~al---lni~vd  197 (885)
T COG5218         168 N-----RIVNLLKDIVQNDPSDEVRRLAL---LNISVD  197 (885)
T ss_pred             H-----HHHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence            1     224566666665 7889998754   455433

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=92.24  E-value=18  Score=38.45  Aligned_cols=118  Identities=14%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      +...+...+..++..+....+.++.++..-......+   ...-.+.-..-.+..-..+......+|.++....+..   
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~---  515 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH---  515 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence            4556666677777778888888888876432111000   0011111111111111234455556666665554433   


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316          408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                              ....+.+.+....+-.++=++++++++.|..++...|+.+...|
T Consensus       516 --------L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e  559 (727)
T PF12726_consen  516 --------LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLE  559 (727)
T ss_pred             --------HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHH
Confidence                    57888888999999999999999999999999999998666544

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=92.17  E-value=2.8  Score=32.58  Aligned_cols=97  Identities=13%  Similarity=0.195  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH
Q 011316          342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID  421 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~  421 (488)
                      ..-.....=|++++.. ++.....     +++.|.+-|++.++.|...+|.+|..++..+...           |+..+.
T Consensus        16 p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~   78 (122)
T cd03572          16 PTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQ   78 (122)
T ss_pred             CCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHH
Confidence            3334445555666654 2232333     5788888889889999999999999999887633           444443


Q ss_pred             -hhccHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC
Q 011316          422 -DAEGLEKIENLQSH--------DNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       422 -~~g~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~  455 (488)
                       ....++.+.++...        .+..|+..|..+++-+|+++
T Consensus        79 ~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          79 RNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence             44456667776552        35679999999999999875

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=92.14  E-value=14  Score=37.10  Aligned_cols=160  Identities=15%  Similarity=0.028  Sum_probs=93.4

Q ss_pred             ChHHHHHHhccc-chhhHHHHHHHHH---HHHhcC-CHHH---HHHHHHcCChHHHHH----HHhcCChhHHHHHHHHHH
Q 011316          285 ALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQ---IQAIIEAGIIGPLVN----LLLNAEFEIKKEAAWAIS  352 (488)
Q Consensus       285 ~~~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~---~~~l~~~~~l~~L~~----ll~~~~~~v~~~a~~aL~  352 (488)
                      ++..+..-+.+. .+.++|..++..+   .....+ .+..   ....+..++.+.+-.    --...+...|..+..+|+
T Consensus       320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG  399 (501)
T PF13001_consen  320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG  399 (501)
T ss_pred             HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence            333444444332 1456666666666   544442 2332   233444566665510    011236789999999999


Q ss_pred             HhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011316          353 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  432 (488)
Q Consensus       353 ~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l  432 (488)
                      .++.....-...   +-+++..|.+-|+.++++++..+-++|..+...-......         ...-........+...
T Consensus       400 ~L~~~~p~l~~~---d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---------~~~~~~~~~~~l~~~~  467 (501)
T PF13001_consen  400 LLAKRAPSLFSK---DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---------EDEQKRLLLELLLLSY  467 (501)
T ss_pred             HHHccCcccccc---cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHhh
Confidence            999865332211   2357888888888889999999999999887654432210         0000000001122233


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCC
Q 011316          433 QSHDNTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       433 ~~~~~~~v~~~a~~~l~~~~~~~~  456 (488)
                      ..+....++..|.+..+++|+.++
T Consensus       468 ~~~~~~~~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  468 IQSEVRSCRYAAVKYANACFPFSD  491 (501)
T ss_pred             ccchhHHHHHHHHHHHHHhCCccc
Confidence            345566789999999999998765

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.99  E-value=0.89  Score=36.67  Aligned_cols=77  Identities=17%  Similarity=0.302  Sum_probs=62.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~  449 (488)
                      ++..|..-+.++++.++..|+..|..+++.+...           |...+.+.+.++.+..+.. ..+++|++++..++.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~  110 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH-----------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ  110 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            5777778888899999999999999998875432           5677777888888888865 678999999999999


Q ss_pred             HhcCCCCCC
Q 011316          450 TYWVEEDED  458 (488)
Q Consensus       450 ~~~~~~~~~  458 (488)
                      .+...-..+
T Consensus       111 ~W~~~f~~~  119 (142)
T cd03569         111 AWALAFRNK  119 (142)
T ss_pred             HHHHHhCCC
Confidence            988765543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.90  E-value=20  Score=38.49  Aligned_cols=59  Identities=12%  Similarity=0.085  Sum_probs=39.3

Q ss_pred             hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316          124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       124 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L  183 (488)
                      +|++++.+++...+..+..+...+++.-..+-+...++.++..+ ......++...+..|
T Consensus       475 FLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkil  533 (2799)
T KOG1788|consen  475 FLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKIL  533 (2799)
T ss_pred             HHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHH
Confidence            46678888888888888888877777666666666677777666 333334444444433

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.86  E-value=0.66  Score=37.49  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|++++.....+.++..++..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999998877556677888889999999999884448999999999888765

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.83  E-value=0.66  Score=37.43  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+-|++.++.+++.|+..|-.++.+-+......+...+++..|++++.....+.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999988875555677777889999999999864448999999988887765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.81  E-value=9.6  Score=34.41  Aligned_cols=176  Identities=18%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-------CchhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHh
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-------TSENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALG  141 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~  141 (488)
                      |+-+.+.+-+.++.   ....++..+..++.-       ..+.|-.+.-.+.+|.++.-+.+++    ......++..|+
T Consensus        64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La  140 (262)
T PF14225_consen   64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA  140 (262)
T ss_pred             hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence            33344444455544   345566666666541       1223333333345677777776655    234456667888


Q ss_pred             hhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHH
Q 011316          142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT  218 (488)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  218 (488)
                      .+|.....        ..+..++....+..   ..+....++..|+.-..  |    ......+..++.++.++-..++.
T Consensus       141 ~~a~~~~~--------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~  206 (262)
T PF14225_consen  141 QVAEAQGL--------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRR  206 (262)
T ss_pred             HHHHhCCC--------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHH
Confidence            88743221        23444444442222   23344444444443221  1    12345677788999999899999


Q ss_pred             HHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011316          219 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       219 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      ..+.+|..+....+-...  ...+++..+.+++..+.   -..|+.+|-...
T Consensus       207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v  253 (262)
T PF14225_consen  207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV  253 (262)
T ss_pred             HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence            999999999876543322  44468888899987765   444555554443

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=91.61  E-value=13  Score=35.67  Aligned_cols=307  Identities=14%  Similarity=0.130  Sum_probs=157.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCc-cHHHHHHcCCHHHHHHhhc----C------CCChhHHHHHHHHHHHhcCCCchh
Q 011316           40 WSDDRNIQLDATTQFRKLLSIERSP-PINEVIQSGVVPRFIEFLS----R------DDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        40 ~s~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~i~~L~~lL~----~------~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+++..-|..|-..|.+.+...+.. ..+.+.  .-++.+.+.++    +      +.+.++..+|+++++.+.. +++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence            3455566666777777766544222 222222  23444444432    2      1125788999999999987 6665


Q ss_pred             hHHHHhCC---CHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---c-cccHhHHHHH
Q 011316          109 TRVVIDHG---AVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E-HAKLSMLRNA  179 (488)
Q Consensus       109 ~~~~~~~g---~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~v~~~a  179 (488)
                      ...+-..-   ++...+..+.+  .+..+....+|+|..=-..     ..++....+..++..+.   + -.+..+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            55443322   34555555544  4567777788877753222     12333344455555442   1 3456777888


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc---hhHHH---HHHh----C-----CH
Q 011316          180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN---DKIQA---VIEA----G-----VC  244 (488)
Q Consensus       180 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~---~~~~~---~~~~----~-----~l  244 (488)
                      +.++.++....+..-......-++.++..+-+....++..|..++..+...-+   ...+.   ..+.    +     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            88888888775443333344567777777767777777776665555442111   11111   1111    1     22


Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHHHHH
Q 011316          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQ  321 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~  321 (488)
                      +.+..++.+++......-+|...-+.-+++.....-.-...+...-..++++ ++.+|..|..+=..+..   .+.....
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~  313 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP  313 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence            3355555553333333333332222222221111111123455555566777 88899888876555544   2222222


Q ss_pred             HHHHcCChHHHHHHHhcC-Ch----hHHHHHHHHHHHhcc
Q 011316          322 AIIEAGIIGPLVNLLLNA-EF----EIKKEAAWAISNATS  356 (488)
Q Consensus       322 ~l~~~~~l~~L~~ll~~~-~~----~v~~~a~~aL~~l~~  356 (488)
                      ..+.. +..++...+... ..    +++..++..++++..
T Consensus       314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            22221 223333334333 23    566677777776653

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=91.48  E-value=0.97  Score=36.23  Aligned_cols=72  Identities=10%  Similarity=-0.001  Sum_probs=61.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK  399 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~  399 (488)
                      ++..+.+-++++++.++..|+..|-.++.++.......+.+.+++..|++++..      .+..|+..++..+..-..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            566777888899999999999999999999998888888888999999999853      567899998888776543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.23  E-value=2.3  Score=44.21  Aligned_cols=167  Identities=18%  Similarity=0.148  Sum_probs=88.6

Q ss_pred             chHHHHHHhhccCChhH--HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCC
Q 011316          200 PALPALERLIHSNDDEV--LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       200 ~~~~~L~~ll~~~~~~v--~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~  273 (488)
                      ..+..+.+++.+.+..-  ....+..+......+.   .     ..+..+..+++.    .++.++..|+-+++.+....
T Consensus       395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~  466 (618)
T PF01347_consen  395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY  466 (618)
T ss_dssp             HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence            45666777776643222  2222222222222221   1     334455555544    34567777877777776522


Q ss_pred             chh---------hHHHhhCCChHHHHHHhcc---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--
Q 011316          274 DMQ---------TQCIINHQALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--  339 (488)
Q Consensus       274 ~~~---------~~~~~~~~~~~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--  339 (488)
                      ...         ........+++.+...+..   ..+..-+..++.+|+|+...           ..++.|..++...  
T Consensus       467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~  535 (618)
T PF01347_consen  467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEE  535 (618)
T ss_dssp             HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-
T ss_pred             eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccc
Confidence            111         0112223566667766652   22557788899999999542           2566666666665  


Q ss_pred             -ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC--CCCHHHHHHHHHHH
Q 011316          340 -EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN--CPDPRIVTVCLEGL  394 (488)
Q Consensus       340 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~v~~~al~~L  394 (488)
                       ...+|..|+++|..++.......         .+.|..++.  ..+.++|..|...|
T Consensus       536 ~~~~~R~~Ai~Alr~~~~~~~~~v---------~~~l~~I~~n~~e~~EvRiaA~~~l  584 (618)
T PF01347_consen  536 VPHFIRVAAIQALRRLAKHCPEKV---------REILLPIFMNTTEDPEVRIAAYLIL  584 (618)
T ss_dssp             S-HHHHHHHHHTTTTGGGT-HHHH---------HHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhhcCcHHH---------HHHHHHHhcCCCCChhHHHHHHHHH
Confidence             67899999999999976543222         334444444  34678887776433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.69  E-value=1  Score=35.93  Aligned_cols=74  Identities=9%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh-HHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~-v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|.+++.+..... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            567788889999999999999999999888765556677778889999999998765434 88888888877665

Unpublished observations. Domain of unknown function.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.51  E-value=2  Score=36.89  Aligned_cols=146  Identities=12%  Similarity=0.196  Sum_probs=87.3

Q ss_pred             CCHHHHHH-HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC---C-CChhHHHHHHHHHHHhcC-CCchhhHHHHhC
Q 011316           42 DDRNIQLD-ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR---D-DFPQLQFEAAWALTNIAS-GTSENTRVVIDH  115 (488)
Q Consensus        42 ~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~---~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~  115 (488)
                      +...-|.. |+..|..+++ + ++....+.+..+--.+...|..   + ..+.+|..++.+++.+.. ++++....+...
T Consensus       111 ~~~snRvcnaL~lLQclaS-h-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT  188 (315)
T COG5209         111 ERESNRVCNALNLLQCLAS-H-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT  188 (315)
T ss_pred             chhhhHHHHHHHHHHHHhc-C-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence            33344444 4444444444 3 4544444444332223334432   2 125689999999999998 445666777788


Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-------CChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      .++|..++.++.+++--+..++.++..+..++...+......       ..+..++..+-......+...++.+-..++.
T Consensus       189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            999999999999999999999999999887776543322111       1122233333233444555666666555555


Q ss_pred             C
Q 011316          189 G  189 (488)
Q Consensus       189 ~  189 (488)
                      .
T Consensus       269 ~  269 (315)
T COG5209         269 K  269 (315)
T ss_pred             C
Confidence            4

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.45  E-value=6.2  Score=32.85  Aligned_cols=113  Identities=16%  Similarity=0.194  Sum_probs=71.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHHHHHhhCC-CCHHHHHHHHHHHhhhh---CC
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GD  146 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~---~~  146 (488)
                      ..+..+.++|++++ +.-|-.++..+..++..++  .+.+.+.  ..+..++..++. +++.+.+.++.++..+.   .+
T Consensus        25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35667788899988 7888888888888877432  2333333  367888888887 56778888888888875   44


Q ss_pred             CchhHHHHHhcC---ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316          147 SPKCRDLVLSNG---ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       147 ~~~~~~~~~~~~---~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      .|+....+....   +++.++.++ +  +......++.+|..+....+
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~-~--~~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLL-Q--DSSCPETALDALATLLPHHP  146 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHH-h--ccccHHHHHHHHHHHHHHCC
Confidence            455443333222   233344444 1  14566677777777666543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.05  E-value=41  Score=38.68  Aligned_cols=273  Identities=15%  Similarity=0.132  Sum_probs=140.3

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChh
Q 011316          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE  196 (488)
Q Consensus       118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~  196 (488)
                      +..+...+...++..+-.+..+++.++...+.. ..+  ....+..+..+....|+-.|.--..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            344455566678888888888888887544321 111  1245566667755566666666666677766655 334444


Q ss_pred             hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHH-------
Q 011316          197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT-------  265 (488)
Q Consensus       197 ~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~-------  265 (488)
                      .....+..+..+-++. .+.|+..++.++..+...........++ ..+..+..+|-+..   .++...--++       
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            5566677777777765 5699999999999988665544443333 33344444443321   1222111111       


Q ss_pred             ------HhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316          266 ------VGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       266 ------L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                            ++.=...+.. ....-.....+-...-++.++ ++.++.++..++.++-.-.+....   -.-+++.|+.++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence                  1111111111 000111111222222334445 788888888888877653222111   01246666666666


Q ss_pred             CChhHHHHHHHHHHHhccCCCHHH---HHHHH---------------HCCChHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 011316          339 AEFEIKKEAAWAISNATSGGSNEQ---IKFLV---------------SQGCIKPLCDLLN-CPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~~~~~~---~~~l~---------------~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~  398 (488)
                      ...-.|.....++..+......+.   ...+.               +.|+--.+..+++ ..|.+........+.+++
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            544444444444444443221110   11111               3344444555555 345566666666666643

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=89.96  E-value=8.2  Score=40.17  Aligned_cols=158  Identities=15%  Similarity=0.191  Sum_probs=109.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..|..|+..|.|.+..+...+-..+...+..+ .+.       -++..|+...-+.++    ..++.+|..+-  .|..+
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~--~P~~K   69 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQ--EPHDK   69 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcC--CccHH
Confidence            35677999999999888888888888876654 222       135556665433332    34555665443  23222


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .      ++..|-..+..  +..|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.-.
T Consensus        70 ~------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   70 H------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             H------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence            2      34556666654  577888999999999887777788888899999999998888999999999999988766


Q ss_pred             CCCCChhhhhchHHHHHHhh
Q 011316          190 KPQPLFEQTRPALPALERLI  209 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll  209 (488)
                      .+.........++.....++
T Consensus       142 ip~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  142 IPSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             ccchhhHHHHHHHHHHHHHH
Confidence            55544444555555555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.88  E-value=1.9  Score=34.44  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=59.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC--CChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+-|+++++.+++.|+..|-.+..+.+......+....++..|++++...  ..+.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999988876444556666668888899999763  337899999998887765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=89.67  E-value=3.1  Score=30.96  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 011316          368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI  447 (488)
Q Consensus       368 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~  447 (488)
                      ....+..|++.+..++......++..+..+++...             ....+.+.|+.+-+.++....+++.+.....+
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34567888888888888788899999999877665             36778889999999999988888888888777


Q ss_pred             HHH
Q 011316          448 LET  450 (488)
Q Consensus       448 l~~  450 (488)
                      ++.
T Consensus        95 l~~   97 (98)
T PF14726_consen   95 LDQ   97 (98)
T ss_pred             Hhc
Confidence            764

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.67  E-value=2.5  Score=33.93  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=60.0

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..|+..|..+++.+...           |...+.+.+.+..+..+...      .+++|+++.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ki  107 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER-----------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKI  107 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            5677778888999999999999999998876543           56777777778778888742      578999999


Q ss_pred             HHHHHHhcCCCC
Q 011316          445 VKILETYWVEED  456 (488)
Q Consensus       445 ~~~l~~~~~~~~  456 (488)
                      ..++..+-..-.
T Consensus       108 l~li~~W~~~f~  119 (139)
T cd03567         108 IELLYSWTLELP  119 (139)
T ss_pred             HHHHHHHHHHhc
Confidence            999998776544

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.21  E-value=22  Score=37.37  Aligned_cols=175  Identities=14%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             hHHHhhCCChHHHHHHhcccch-------hhHHHHHHHHHHHHhcCCHHHHHHHHH--------cCChHHHHHHHhc---
Q 011316          277 TQCIINHQALPCLLDLLTQNYK-------KSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLVNLLLN---  338 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~l~~L~~ll~~---  338 (488)
                      ...+.+.+.+..++.+.+.+.+       .+....|+.+|+-+..- ++....+..        ...+..++..-..   
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            4445567778888887765433       33455666666655543 333333332        1133333333222   


Q ss_pred             -CChhHHHHHHHHHHHhccCCC------------------------------HH----HHHHHHHCCChHHHHhhcCCCC
Q 011316          339 -AEFEIKKEAAWAISNATSGGS------------------------------NE----QIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       339 -~~~~v~~~a~~aL~~l~~~~~------------------------------~~----~~~~l~~~~~~~~L~~ll~~~~  383 (488)
                       .|+++++.|+.++.|+.....                              ..    ....+...+++..|+++|.-..
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~  752 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN  752 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence             278999999999999876430                              00    1112224688999999988544


Q ss_pred             -----HHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc--HHHHHHhhc------CC--CHHHHHHHHHHH
Q 011316          384 -----PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG--LEKIENLQS------HD--NTEIYEKAVKIL  448 (488)
Q Consensus       384 -----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~l~~l~~------~~--~~~v~~~a~~~l  448 (488)
                           ..++..|+.+|.-+.....             +++++...-.  -..++.++.      +.  +-..-..|..+|
T Consensus       753 P~t~aD~IRalAc~~L~GLaR~~t-------------VrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll  819 (1516)
T KOG1832|consen  753 PPTTADCIRALACRVLLGLARDDT-------------VRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALL  819 (1516)
T ss_pred             CCCcHHHHHHHHHHHHhccccCcH-------------HHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHH
Confidence                 3578888888877765544             2333332221  123344432      22  233446788889


Q ss_pred             HHhcCCCCCCCCCCCCC
Q 011316          449 ETYWVEEDEDEPLPPGD  465 (488)
Q Consensus       449 ~~~~~~~~~~~~~~~~~  465 (488)
                      ++.+...-++..-|++-
T Consensus       820 ~~~~g~~lp~~~g~~~~  836 (1516)
T KOG1832|consen  820 KEAQGTPLPSSAGPSSI  836 (1516)
T ss_pred             HHHhCCcCccccCcchh
Confidence            88888766666555543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.14  E-value=2.1  Score=34.10  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=60.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-C-HHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-N-TEIYEKAVKIL  448 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~-~~v~~~a~~~l  448 (488)
                      ++..|..-+.++++.++..|+..|..+++.+...           |...+.+.+.++.|..+..++ + +.|++++..++
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-----------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li  106 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-----------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI  106 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4667778888999999999999999998876532           677777888888888886553 3 44999999999


Q ss_pred             HHhcCCCCCC
Q 011316          449 ETYWVEEDED  458 (488)
Q Consensus       449 ~~~~~~~~~~  458 (488)
                      ..+...-..+
T Consensus       107 ~~W~~~f~~~  116 (133)
T smart00288      107 QEWADAFKND  116 (133)
T ss_pred             HHHHHHHcCC
Confidence            9888766553

Unpublished observations. Domain of unknown function.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.90  E-value=30  Score=35.42  Aligned_cols=113  Identities=11%  Similarity=0.053  Sum_probs=78.8

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcC---CHHHHHHHHH--cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  360 (488)
                      +..+..+|++. +...|.....+.+|+..+   +++.....-+  ...+..|.+-+.+..+-+|.+|+.++..+..-...
T Consensus       301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk  379 (1128)
T COG5098         301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK  379 (1128)
T ss_pred             HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence            56788899988 888998888899999873   2222111111  22566666666777899999999999988764321


Q ss_pred             HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          361 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       361 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      -..+   ...+.+...+.+.+....||..++..+..++..-+
T Consensus       380 ~~~~---r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         380 TVGR---RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             ccch---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            1111   11356677778888889999999999999987644

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.63  E-value=4  Score=32.50  Aligned_cols=74  Identities=8%  Similarity=-0.022  Sum_probs=61.7

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~v~~~al~~L~~l~~~~  401 (488)
                      ++..|..-++++++.++..|+..|-.++.++.......+.....+..|..++..   .++.|+..++..+.......
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            567778888899999999999999999999988788888777888889998875   46789999988887765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.33  E-value=35  Score=35.61  Aligned_cols=399  Identities=13%  Similarity=0.156  Sum_probs=195.6

Q ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHhccC---CCccHHHHHHc--CCH-HHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316           34 AMVAGVWSD--DRNIQLDATTQFRKLLSIE---RSPPINEVIQS--GVV-PRFIEFLSRDDFPQLQFEAAWALTNIASGT  105 (488)
Q Consensus        34 ~l~~~L~s~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~--~~i-~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~  105 (488)
                      .++..+.++  ++.+|..|+..+.+.+..+   ..+....+.+.  ..+ ..++.++-+.. ..+|.+--.+++-++..+
T Consensus        41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D  119 (960)
T KOG1992|consen   41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD  119 (960)
T ss_pred             HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence            456666553  6899999999999988743   11111222211  122 33455555555 689999889999998633


Q ss_pred             -chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC-CCchhHH--HHHh----c-CChHHHHHHhcc-------
Q 011316          106 -SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRD--LVLS----N-GALMPLLAQFNE-------  169 (488)
Q Consensus       106 -~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~--~~~~----~-~~i~~l~~~l~~-------  169 (488)
                       |+....+     ++.|+.-+++.|-......+.+-..+.. ..+.+|.  ...+    . ..-.++..++.+       
T Consensus       120 FP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~  194 (960)
T KOG1992|consen  120 FPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR  194 (960)
T ss_pred             cchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence             5554433     5777777777666655555554444431 1111111  0000    0 112233333311       


Q ss_pred             -cccHh-------HHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCC-------------hhHHHHHHHHHHHh
Q 011316          170 -HAKLS-------MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSND-------------DEVLTDACWALSYL  227 (488)
Q Consensus       170 -~~~~~-------v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~-------------~~v~~~al~~L~~l  227 (488)
                       .++..       +..-.+.....|...+ |.--.......++...++++.++             ..++...|..+.-.
T Consensus       195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY  274 (960)
T KOG1992|consen  195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY  274 (960)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence             11222       1112222233333322 22222233456666666665222             23455666666655


Q ss_pred             ccCCchhHHHHHHhCCHHHHHHhcCCCC-----cchHhHHHHHHhHhhcCCc--------------------------hh
Q 011316          228 SDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD--------------------------MQ  276 (488)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~--------------------------~~  276 (488)
                      +...++..+.++. .++...-.+|.+-.     +.....|+..|.+.+....                          ..
T Consensus       275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e  353 (960)
T KOG1992|consen  275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE  353 (960)
T ss_pred             HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence            5555555453333 33434444444322     2344456666666665211                          11


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhH-HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH-HHhc--CChhHHHHHHHHHH
Q 011316          277 TQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLN--AEFEIKKEAAWAIS  352 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~-ll~~--~~~~v~~~a~~aL~  352 (488)
                      -..+++.+.++.+-+-|... +.+. |+.|+..+..|+...+.....++.. -+..++. ...+  .++.-+..+.....
T Consensus       354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t  431 (960)
T KOG1992|consen  354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT  431 (960)
T ss_pred             hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence            12333455666676667666 5444 4567777778877654444444332 2232332 2222  26666777777777


Q ss_pred             HhccCCCHHHHHHHHH---CCChHHHH-----hhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH
Q 011316          353 NATSGGSNEQIKFLVS---QGCIKPLC-----DLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID  421 (488)
Q Consensus       353 ~l~~~~~~~~~~~l~~---~~~~~~L~-----~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~  421 (488)
                      .++..+..........   .++++.+.     ++..   .+.+-++..+++-   +...-...           -...+.
T Consensus       432 alaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy---~~~FR~ql-----------~~~~lm  497 (960)
T KOG1992|consen  432 ALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKY---IYTFRNQL-----------GKEHLM  497 (960)
T ss_pred             HHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccce---eeeecccC-----------ChHHHH
Confidence            7776542111000000   01111111     1112   1222233222222   21111110           022222


Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316          422 DAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       422 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                        ..+..+..++..++.-|...|+..+++++.-.+.
T Consensus       498 --~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  498 --ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             --HHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence              2367788888898999999999999999887666

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=88.04  E-value=5.3  Score=31.07  Aligned_cols=88  Identities=17%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCC--
Q 011316          307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD--  383 (488)
Q Consensus       307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~--  383 (488)
                      .=|++++..++.....     ++..|.+-|++.++.|+.+++.+|..++..+++.....+... ..+..+.+.-..+|  
T Consensus        23 ~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~   97 (122)
T cd03572          23 EEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL   97 (122)
T ss_pred             HHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc
Confidence            3445555554443332     567788888988999999999999999999987777776543 33444443322222  


Q ss_pred             ------HHHHHHHHHHHHHHHH
Q 011316          384 ------PRIVTVCLEGLENILK  399 (488)
Q Consensus       384 ------~~v~~~al~~L~~l~~  399 (488)
                            ..||..|-+++..++.
T Consensus        98 ~Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          98 KGDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             cCcchhHHHHHHHHHHHHHHhc
Confidence                  3577777777776654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=87.82  E-value=6.3  Score=36.16  Aligned_cols=140  Identities=11%  Similarity=0.146  Sum_probs=81.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhCCCHHHHHH----hhC--------CCCHHHHHHHHHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWA  139 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~~~~~a~~~  139 (488)
                      =++|.++.++.+.+ +.+|..++.+|..+....+... ..+...|..+.+-.    ++.        .++..+...+..+
T Consensus       119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            36899999999998 9999999999999998444333 23556665554443    333        2456677778888


Q ss_pred             HhhhhCC---C-chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC
Q 011316          140 LGNVAGD---S-PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN  212 (488)
Q Consensus       140 L~~l~~~---~-~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~  212 (488)
                      +..++..   . ...+......-.-+.++..+....   .+.++...+..+..+...-..........+++.+.+.++++
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            8777431   1 111111111111122333332222   36666666666666655433344445566777777766654


Q ss_pred             C
Q 011316          213 D  213 (488)
Q Consensus       213 ~  213 (488)
                      +
T Consensus       278 f  278 (282)
T PF10521_consen  278 F  278 (282)
T ss_pred             C
Confidence            3

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.24  E-value=3.5  Score=39.93  Aligned_cols=143  Identities=11%  Similarity=0.119  Sum_probs=79.9

Q ss_pred             CChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316          284 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       284 ~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  360 (488)
                      .+...|..+|....   ++.+|...+.+|.-|-..+.-     .-..++..++.++..++...|.-+..-+.....+.+.
T Consensus        16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i-----~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~   90 (616)
T KOG2229|consen   16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLI-----VAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK   90 (616)
T ss_pred             hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence            45566777775542   577888888777766442111     1123566677777777777776555444433332211


Q ss_pred             HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011316          361 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI  440 (488)
Q Consensus       361 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v  440 (488)
                      .....=....+-..+..+|+++++.--..++..+..+.+..-+..                 +..+..+..-.-|.++.|
T Consensus        91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~d-----------------~~tV~i~~~acf~~~~ki  153 (616)
T KOG2229|consen   91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWND-----------------SKTVNIITTACFSKVPKI  153 (616)
T ss_pred             hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccccc-----------------chhHHHHHHHHhccCcHH
Confidence            111111122345667788998888766667777777766655442                 222333333355667888


Q ss_pred             HHHHHHHH
Q 011316          441 YEKAVKIL  448 (488)
Q Consensus       441 ~~~a~~~l  448 (488)
                      .-.+...+
T Consensus       154 ~vs~l~Ff  161 (616)
T KOG2229|consen  154 LVSGLRFF  161 (616)
T ss_pred             HHhhhHHh
Confidence            76666543

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=87.17  E-value=34  Score=35.18  Aligned_cols=135  Identities=20%  Similarity=0.188  Sum_probs=83.0

Q ss_pred             chHHHHHHhhccC----ChhHHHHHHHHHHHhcc----CCchhHHHHHHhCCHHHHHHhc----CCCCcchHhHHHHHHh
Q 011316          200 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG  267 (488)
Q Consensus       200 ~~~~~L~~ll~~~----~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~L~  267 (488)
                      ..+..+..+++++    ...++..++-+++++..    ..+..-..+. ..+++.+...|    ...+...+...+.+|+
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            4566677777653    45677777777777663    1111101111 24455555544    3345566778899999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhc--ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEI  343 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v  343 (488)
                      |+...           ..+..+...+.  ...+..+|..|+++|..++...+..        +-+.++.++.+.  ++++
T Consensus       472 N~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            98652           22344444443  2225689999999999998644443        445566666664  7788


Q ss_pred             HHHHHHHHHHh
Q 011316          344 KKEAAWAISNA  354 (488)
Q Consensus       344 ~~~a~~aL~~l  354 (488)
                      |..|+.+|...
T Consensus       533 RiaA~~~lm~t  543 (574)
T smart00638      533 RMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHhc
Confidence            88888777655

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=87.03  E-value=12  Score=37.73  Aligned_cols=219  Identities=11%  Similarity=-0.023  Sum_probs=120.0

Q ss_pred             cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--c---------CChhHHHHHHHHHHHhccCCchhHHHH
Q 011316          170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAV  238 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~--~---------~~~~v~~~al~~L~~l~~~~~~~~~~~  238 (488)
                      +++.+|...|-..|..+...      .....++..|..+..  .         .++.++...+..|+.-....      -
T Consensus       248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~  315 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T  315 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence            34556777777777766654      233556666776665  2         24667777766666421110      0


Q ss_pred             HHhCCHHHHHHhcCCC--CcchHhHHHHHH---hHhhcCCchhhHHHhhCCChHHHHHHhc-------ccchhhHHHHHH
Q 011316          239 IEAGVCPRLVELLRHP--SPSVLIPALRTV---GNIVTGDDMQTQCIINHQALPCLLDLLT-------QNYKKSIKKEAC  306 (488)
Q Consensus       239 ~~~~~l~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~~~~L~~lL~-------~~~~~~v~~~a~  306 (488)
                      .....+..+...+.+.  +..++..++..+   .....+.....-..+...+...+.+.++       ...+...|..+.
T Consensus       316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY  395 (501)
T PF13001_consen  316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY  395 (501)
T ss_pred             CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence            1113344444455555  567777777777   5555544433222332233333333342       112678899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH-HHHHHCCChHHHHh-hcCCCCH
Q 011316          307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI-KFLVSQGCIKPLCD-LLNCPDP  384 (488)
Q Consensus       307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~~~~L~~-ll~~~~~  384 (488)
                      .+|+.++...+.....  +.+++..|++-|..++++++...-.||..++..-..... ...........+.. .......
T Consensus       396 e~lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~  473 (501)
T PF13001_consen  396 ETLGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR  473 (501)
T ss_pred             HHHHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence            9999999875654311  234688888888888899998888888888643211000 00000011222222 2223445


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 011316          385 RIVTVCLEGLENILKAGE  402 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~  402 (488)
                      .+|..|++....++...+
T Consensus       474 ~~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  474 SCRYAAVKYANACFPFSD  491 (501)
T ss_pred             HHHHHHHHHHHHhCCccc
Confidence            567777766666665444

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=86.96  E-value=5.1  Score=37.96  Aligned_cols=209  Identities=20%  Similarity=0.167  Sum_probs=108.8

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                      ...++..+..++..+.++.....++.++..-+..- .+.     ...++..+.+-+.+..+.+|+.-+..++......+.
T Consensus        20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            34456677777776654677777777776655411 111     223467777778777777999988888888751111


Q ss_pred             hHHHHHhcCChHHHHHHhccc---ccHhHH---HHHHHHHHHhhcCC-----------------CCCChhhhhchHHHHH
Q 011316          150 CRDLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-----------------PQPLFEQTRPALPALE  206 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~~---~~~~v~---~~a~~~L~~l~~~~-----------------~~~~~~~~~~~~~~L~  206 (488)
                      ......-...++.+++.+.+.   +-+..+   ..++.++..+....                 +........       
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------  167 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------  167 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------
Confidence            011111123566666666321   111111   11222222211111                 000101111       


Q ss_pred             Hhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011316          207 RLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINH  283 (488)
Q Consensus       207 ~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  283 (488)
                      +++.. .+++-....++++..+..........-.....-..++.++-+.  .+.+|..|+.++..+...++..    +..
T Consensus       168 kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~  243 (339)
T PF12074_consen  168 KVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSK  243 (339)
T ss_pred             HHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHH
Confidence            22222 3445555666666666644332211111224456777887776  7899999999999998877753    222


Q ss_pred             CChHHHHHHhcc
Q 011316          284 QALPCLLDLLTQ  295 (488)
Q Consensus       284 ~~~~~L~~lL~~  295 (488)
                      .++..+-+.+..
T Consensus       244 ~li~~l~~~l~~  255 (339)
T PF12074_consen  244 SLISGLWKWLSS  255 (339)
T ss_pred             HHHHHHHHHHHh
Confidence            345555555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=86.37  E-value=15  Score=29.62  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=57.0

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH-HHHhhcC---CCHHHHHHHH
Q 011316          371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSH---DNTEIYEKAV  445 (488)
Q Consensus       371 ~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~~---~~~~v~~~a~  445 (488)
                      ++..|..-+. +.++.++..++..|..+++.+...           |...+.+.+.++. |..+...   .+.+|+.+..
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~-----------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil  107 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR-----------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVL  107 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHH
Confidence            4555556555 468889999999999998877643           6677777778876 7777652   3568999999


Q ss_pred             HHHHHhcCCCCC
Q 011316          446 KILETYWVEEDE  457 (488)
Q Consensus       446 ~~l~~~~~~~~~  457 (488)
                      .++..+...-..
T Consensus       108 ~li~~W~~~f~~  119 (141)
T cd03565         108 ALIQAWADAFRG  119 (141)
T ss_pred             HHHHHHHHHhCC
Confidence            999998876554

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.29  E-value=25  Score=31.76  Aligned_cols=165  Identities=19%  Similarity=0.174  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhh
Q 011316          130 DDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTR  199 (488)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~  199 (488)
                      +...+.++..|..++...       ++.+-.+.-...+|.++..+.+..   .......++..|..+|......      
T Consensus        76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~------  149 (262)
T PF14225_consen   76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP------  149 (262)
T ss_pred             CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc------
Confidence            445556777777776432       111222222234566666663222   0234456777888888553211      


Q ss_pred             chHHHHHHhhc-c---CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316          200 PALPALERLIH-S---NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       200 ~~~~~L~~ll~-~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                       -+..++.... .   +..+....++..|+.-.-  ++.     +...+..++.+|.++-+.++..++.+|..+....+-
T Consensus       150 -~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~  221 (262)
T PF14225_consen  150 -NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM  221 (262)
T ss_pred             -cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence             2222222222 2   223444444444443211  111     125567788999998889999999999999886554


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ...  ...+++..+.++++++    ...+|..++-+...
T Consensus       222 ~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  222 RSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             CCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            432  5556889999999877    34567777666554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.26  E-value=2.7  Score=36.65  Aligned_cols=79  Identities=23%  Similarity=0.241  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHhcCCCchhhHHHHhCCC-------HHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhH-HHHHhcCC
Q 011316           89 QLQFEAAWALTNIASGTSENTRVVIDHGA-------VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGA  159 (488)
Q Consensus        89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~  159 (488)
                      .=|..|+.+|++++- .+.+.+.+...+-       +..|.+++.. +++-.|+.|+-.|.+++..+.... ....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            358889999999997 5566666655553       3444555543 789999999999999998776544 55667788


Q ss_pred             hHHHHHHhc
Q 011316          160 LMPLLAQFN  168 (488)
Q Consensus       160 i~~l~~~l~  168 (488)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999993

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.23  E-value=20  Score=30.54  Aligned_cols=71  Identities=20%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~  150 (488)
                      .++.++++..+++ ..++..|+.++..+....--+-.     ..+|.++.+..++++.++..|...+..+.+..+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            5677788888888 89999999999888873322211     24799999999999999999999999998665543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.06  E-value=73  Score=36.88  Aligned_cols=235  Identities=15%  Similarity=0.090  Sum_probs=124.4

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011316           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~  148 (488)
                      +..-.+..++..|..++ +..+-.+..+++.++...++..  ++ .+..+.++.-+.+ .++..|..-..+++.+-++..
T Consensus       873 v~~~~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg  948 (2067)
T KOG1822|consen  873 VRSSALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG  948 (2067)
T ss_pred             HHHHHHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence            33334556666677777 8888888888888886222111  11 1224455555544 666666666666666644332


Q ss_pred             hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC---hhHHHH------
Q 011316          149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTD------  219 (488)
Q Consensus       149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~------  219 (488)
                      .....-.....+..++.+..++.++.|+..++.++..+...............+..+..++.+..   .++...      
T Consensus       949 s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen  949 SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred             CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc
Confidence            22112222234666777776667779999999999988877633345555566666666665422   222211      


Q ss_pred             -------HHHHHHHhccCCch--hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011316          220 -------ACWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  290 (488)
Q Consensus       220 -------al~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  290 (488)
                             ...+++.=...+..  ... ..+...+....-++.++++-++..+..++-++-...+....   -.-++..+.
T Consensus      1029 ~~~~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1029 GDDDEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLC 1104 (2067)
T ss_pred             cchhHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHH
Confidence                   11122221111111  111 12222233333345667888899999999888765543211   112445555


Q ss_pred             HHhcccchhhHHHHHHHHHHHHh
Q 011316          291 DLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       291 ~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      .++.+. ..-.|.....++..+.
T Consensus      1105 ~~l~s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1105 SLLSSS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             HHhcch-hhhhhhhHHhhhhHHh
Confidence            555555 3334444444444443

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=86.05  E-value=8.9  Score=28.52  Aligned_cols=93  Identities=13%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316           45 NIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      ++|..|+..+..=+... --....+. ....+..|++.++.+. ...+..++..+..++. ++.....+.+-|....|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            45666665554433332 22223333 4567788888888888 5688899999999988 7888888888898888777


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 011316          124 LLSSPTDDVREQAVWAL  140 (488)
Q Consensus       124 lL~~~~~~~~~~a~~~L  140 (488)
                      +-...++..+...-.++
T Consensus        79 lr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            66666666665554444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.60  E-value=4  Score=35.68  Aligned_cols=84  Identities=20%  Similarity=0.234  Sum_probs=61.8

Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhC-------CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHcCC
Q 011316          257 SVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGI  328 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~  328 (488)
                      +-+..|+.+|+.++.. +.....++..       .++..|.+++....+...|+.|+..|.+++.++......+ .+.+.
T Consensus       139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            4678899999999873 2233333322       4566777778777688999999999999999766655443 46788


Q ss_pred             hHHHHHHHhcCCh
Q 011316          329 IGPLVNLLLNAEF  341 (488)
Q Consensus       329 l~~L~~ll~~~~~  341 (488)
                      +..|+.++.+.+.
T Consensus       218 i~~Li~FiE~a~~  230 (257)
T PF12031_consen  218 ISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=85.39  E-value=36  Score=32.73  Aligned_cols=220  Identities=15%  Similarity=0.155  Sum_probs=121.9

Q ss_pred             cHhHHHHHHHHHHHhhcCCCCC---ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011316          172 KLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  246 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~  246 (488)
                      +..+..+|+.+++.+..+..-.   ......-++...+..+.++  +..+....+++|..---..     .++....+..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~  133 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVER  133 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHH
Confidence            6678889999999888765211   1112223555566666543  4567777777776532211     1223333444


Q ss_pred             HHHhc---C--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--C-CHH
Q 011316          247 LVELL---R--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G-NVN  318 (488)
Q Consensus       247 L~~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~-~~~  318 (488)
                      ++..+   .  -++..+....+.++.++....+.....-.+ ..++.++..+-+. ...+|..|...+..+..  + +..
T Consensus       134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~  211 (372)
T PF12231_consen  134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE  211 (372)
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence            44433   2  245678888899999998866644322211 3677777776666 66677766655554443  2 122


Q ss_pred             HHH---HHHHc----C-----ChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316          319 QIQ---AIIEA----G-----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       319 ~~~---~l~~~----~-----~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~  385 (488)
                      ...   ...+.    +     +.+.|..++.+++....---+|...-+..... .+....+  +..+.....+++++++.
T Consensus       212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~  289 (372)
T PF12231_consen  212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ  289 (372)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence            111   12221    2     23346666666333222222333333333222 1222222  23566667788899999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011316          386 IVTVCLEGLENILKA  400 (488)
Q Consensus       386 v~~~al~~L~~l~~~  400 (488)
                      ++..|..+-..++..
T Consensus       290 ~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  290 VKIQAFKAWRRLIYA  304 (372)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998888763

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.03  E-value=48  Score=33.86  Aligned_cols=289  Identities=11%  Similarity=0.110  Sum_probs=141.7

Q ss_pred             cHHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hh
Q 011316           31 SLPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-EN  108 (488)
Q Consensus        31 ~i~~l~~~L-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~  108 (488)
                      .++.+.+.| .+.|+..|.+|-..|..+.. . ++.         +..-.-++..++.|--+..|..+|..+..+.. -.
T Consensus         6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-s-pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lp   74 (1082)
T KOG1410|consen    6 QLESLCKDLYESTDPTARHRAEKALAELSE-S-PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLP   74 (1082)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-C-HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCc
Confidence            345566666 47899999999999999643 2 232         22333355666657788888888888877432 11


Q ss_pred             hHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHH
Q 011316          109 TRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT  182 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~  182 (488)
                      ...  ..++-..++..+....    +-+....+..++.+..-..  ..++...=.+.+..+.+.+ +..+.+--.-++..
T Consensus        75 l~q--rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i  151 (1082)
T KOG1410|consen   75 LEQ--RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI  151 (1082)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence            111  1133456666666533    3344444555555542211  0011111223455666666 33333333344445


Q ss_pred             HHHhhcCC-------CCCChh---------hhhchHHHHHHhhccC-----Ch----hHHHHHHHHHHHhc------c--
Q 011316          183 LSNFCRGK-------PQPLFE---------QTRPALPALERLIHSN-----DD----EVLTDACWALSYLS------D--  229 (488)
Q Consensus       183 L~~l~~~~-------~~~~~~---------~~~~~~~~L~~ll~~~-----~~----~v~~~al~~L~~l~------~--  229 (488)
                      |..+...-       |.....         ....++..-..+++..     +.    .+...++..-.+..      .  
T Consensus       152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~  231 (1082)
T KOG1410|consen  152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSST  231 (1082)
T ss_pred             HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccc
Confidence            55444321       100000         0112222222333211     11    22222222221111      1  


Q ss_pred             -C----------CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-----CchhhHHHhhCCChHHHHHHh
Q 011316          230 -G----------TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----DDMQTQCIINHQALPCLLDLL  293 (488)
Q Consensus       230 -~----------~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L~~lL  293 (488)
                       .          +......+.+...++.+.++..+-.+.....++.||..++.-     +...+...+. ..++-..+++
T Consensus       232 DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il  310 (1082)
T KOG1410|consen  232 DESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRIL  310 (1082)
T ss_pred             ccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHH
Confidence             1          111233455667888888988887888899999999999862     2222222222 3445555666


Q ss_pred             cccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011316          294 TQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  336 (488)
Q Consensus       294 ~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll  336 (488)
                      .++.   ++.--.+-|+.|+.+-.+  -+...++.....+..++++
T Consensus       311 ~np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~~Y~e~irLi  354 (1082)
T KOG1410|consen  311 ENPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVECYPEVIRLI  354 (1082)
T ss_pred             hCCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccCCcHHHHHHH
Confidence            5542   344445566666655432  1222333333444444443

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.01  E-value=3  Score=33.59  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=58.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHH---HHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTE---IYEKAVK  446 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~---v~~~a~~  446 (488)
                      ++..|..-|.++++.++..|+..|..+++.+...           |...+.....++.+..+.. +....   |++++..
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~  111 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILE  111 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence            4677778888899999999999999999876533           6777777778888888743 44444   8999999


Q ss_pred             HHHHhcCCCCC
Q 011316          447 ILETYWVEEDE  457 (488)
Q Consensus       447 ~l~~~~~~~~~  457 (488)
                      ++..+......
T Consensus       112 ll~~W~~~f~~  122 (140)
T PF00790_consen  112 LLQEWAEAFKS  122 (140)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHCC
Confidence            99887665533

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=84.86  E-value=49  Score=33.77  Aligned_cols=288  Identities=14%  Similarity=0.160  Sum_probs=146.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ++..+=+.+-++++.++--|+-.+.-..++..++.      .-++-.|...+++++ ..+|..|+..|+-.-.+  ..++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaG--sq~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAG--SQRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcC--CchH
Confidence            45566666666666666555444433333221111      123445666777777 68888888777655442  2333


Q ss_pred             HHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      .+.     ..|..++.+.  ..++...+...|+.+..++.+  ..+ ....++.++..-.........+.....|.-+..
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            332     2556666653  356777777777777644322  111 111233333322111122222333333333332


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT  265 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~  265 (488)
                      +.        ...+.....-++.-...++..+-..+...+.......-.+-+    ..+...-....   ..-+..|+--
T Consensus       559 gk--------qe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GK--------QESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             cc--------cchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            22        122333333343333444443333333322211111110111    11222222211   1222244444


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      ++.++.+.+-..+.     .+..+-.+|.-+ ++.+|+..=.+++-++..+|..       ++++.|-++.++.+.++..
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            55555544433332     345566677778 8899999888999888877763       4788899998999999999


Q ss_pred             HHHHHHHHhccCCCH
Q 011316          346 EAAWAISNATSGGSN  360 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~  360 (488)
                      +++.+++-+-...+.
T Consensus       694 naIfamGLiGAGTnN  708 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNN  708 (878)
T ss_pred             HHHHHhccccCCcch
Confidence            999999888665433

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=84.85  E-value=19  Score=33.54  Aligned_cols=146  Identities=12%  Similarity=0.066  Sum_probs=85.4

Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhhC-----------CChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCCH
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLT------QNYKKSIKKEACWTISNITAGNV  317 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~  317 (488)
                      .-.+|.+|+.++.....++++....+++.           ....-+...|-      +. ++---..|+.++..+..+++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~  129 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP  129 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence            45789999999999999888776666621           11222444443      22 33334578888889988877


Q ss_pred             HHHHHHHHc------------CChHHHHHHHhc-----CChhHHHHHHHHHHHhccCCCHHHHHHHHH-CCChHHHHhhc
Q 011316          318 NQIQAIIEA------------GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLL  379 (488)
Q Consensus       318 ~~~~~l~~~------------~~l~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll  379 (488)
                      +.+.....-            ..+..+..+|..     .++.++..-+..|......+ +.....+.+ ...+..|++..
T Consensus       130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~-p~AV~~FL~~~s~l~~Li~~~  208 (312)
T PF04869_consen  130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC-PDAVNDFLSEGSNLQSLIEFS  208 (312)
T ss_dssp             HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred             HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC-HHHHHHHHcCcchHHHHHHHh
Confidence            776555421            125555555544     26777777788888887655 555555554 46788888865


Q ss_pred             CC---CCHHHHHHHHHHHHHHHHhhh
Q 011316          380 NC---PDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       380 ~~---~~~~v~~~al~~L~~l~~~~~  402 (488)
                      .+   .+.-++-.+.-.|+-....+.
T Consensus       209 ~~~~~~~~~VqGL~A~LLGicyef~~  234 (312)
T PF04869_consen  209 NQSSSEDVLVQGLCAFLLGICYEFST  234 (312)
T ss_dssp             S--TCCCHHHHHHHHHHHHHHHHT-S
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcC
Confidence            42   234455555555666666553

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.11  E-value=40  Score=32.17  Aligned_cols=156  Identities=13%  Similarity=0.070  Sum_probs=85.8

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC--C--------CCHHHHHHHHHHHhhhh
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--S--------PTDDVREQAVWALGNVA  144 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~--------~~~~~~~~a~~~L~~l~  144 (488)
                      -..++..|..+.....+..++..+.-++. +...-..+......+.|+.+-+  +        .+..+...++.+|+|+.
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv  125 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV  125 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence            34555666655434455666666666666 3333333332233444444321  1        34578888999999999


Q ss_pred             CCCchhHHHHHhcCChHHHHHHhcccc------cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC------
Q 011316          145 GDSPKCRDLVLSNGALMPLLAQFNEHA------KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN------  212 (488)
Q Consensus       145 ~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~------  212 (488)
                      .+++..++...+......+++.+....      +.+....=+..+...............-.+++.+.+.+.+.      
T Consensus       126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse  205 (532)
T KOG4464|consen  126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE  205 (532)
T ss_pred             hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence            999999999999888888877763221      11221111111112122112223334455666666666531      


Q ss_pred             ---------ChhHHHHHHHHHHHhccCC
Q 011316          213 ---------DDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       213 ---------~~~v~~~al~~L~~l~~~~  231 (488)
                               +......++.++.|+....
T Consensus       206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  206 INVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence                     1234556777777877543

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=83.91  E-value=29  Score=36.94  Aligned_cols=143  Identities=10%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316          246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      .+...+.++++......+.++.+++.-..-..+.  ...-.+.-..-.+.. -..+......+|..++.-+++....++.
T Consensus       445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~l~~  521 (727)
T PF12726_consen  445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKELLS  521 (727)
T ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence            3344444445555555555555554321111000  111222222223333 3456677888899998877888877774


Q ss_pred             -cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          326 -AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       326 -~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                       .+....+..++-+++.++.+.|...|.......+           -.+.+..++++.-.........+|.++.+...
T Consensus       522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~-----------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~  588 (727)
T PF12726_consen  522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG-----------RLEAIQALLQSNFSPTLSAINWSLRQLTKLKF  588 (727)
T ss_pred             CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence             7789999999999999999999999999875332           23444445554444444555566666655443

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=83.79  E-value=14  Score=31.17  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      --+|.+++.|...+...+..|...+..++.....+.+-.+ -...+..+.+.|++.+ +++...++.+|..++..++
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhh
Confidence            5688999999998888889999999998876222322222 3457788888999999 9999999999999966333

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.74  E-value=12  Score=34.30  Aligned_cols=138  Identities=12%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh-HHHhhCCChHHHHHHhcc-----------cchhhHHHHHHHHH
Q 011316          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQ-----------NYKKSIKKEACWTI  309 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~lL~~-----------~~~~~v~~~a~~~L  309 (488)
                      -++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+.+.+..           .++..+-..+.-++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            468999999999999999999999999998554332 224456655555444321           11445666666666


Q ss_pred             HHHhc-----C---CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC
Q 011316          310 SNITA-----G---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  381 (488)
Q Consensus       310 ~nl~~-----~---~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~  381 (488)
                      ..++.     +   .......++..+++..+...-....+.++...+..+..+...-+....+.+.+  .++.|.+.+++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~n  276 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILEN  276 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcC
Confidence            66633     1   11222222222333332222222235555555555555544333333333332  44555554443

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=83.67  E-value=36  Score=31.37  Aligned_cols=79  Identities=13%  Similarity=0.264  Sum_probs=62.9

Q ss_pred             cCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH-HHHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHH
Q 011316          326 AGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILK  399 (488)
Q Consensus       326 ~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~  399 (488)
                      .|.+..+++.+...  +...|-.-+.++-.+....+. ....++.+.|+++.++..+-++   +..+.+.+...|+.+++
T Consensus        94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK  173 (303)
T PF12463_consen   94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK  173 (303)
T ss_pred             ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence            56788888877765  667888899999999998877 4566889999999999966544   34688889999999998


Q ss_pred             hhhhh
Q 011316          400 AGEAE  404 (488)
Q Consensus       400 ~~~~~  404 (488)
                      .+...
T Consensus       174 ~n~~~  178 (303)
T PF12463_consen  174 FNRDA  178 (303)
T ss_pred             CCHHH
Confidence            76544

Proteins in this family are typically between 399 and 797 amino acids in length.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=83.49  E-value=14  Score=40.35  Aligned_cols=236  Identities=19%  Similarity=0.220  Sum_probs=132.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH--------HhhcCCCChhHHHHHHHHHHHh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI--------EFLSRDDFPQLQFEAAWALTNI  101 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~--------~lL~~~~~~~v~~~a~~~L~~l  101 (488)
                      +.+..|+..+-++..++|.-++.+++.+++...........+..++..+.        +...++--..+++.++++|..+
T Consensus        77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~  156 (1549)
T KOG0392|consen   77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY  156 (1549)
T ss_pred             HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence            44667888889999999999999999998765333222222222222221        1111111146899999999988


Q ss_pred             cCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh---cCChHHHHHHhcccccHhHHHH
Q 011316          102 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS---NGALMPLLAQFNEHAKLSMLRN  178 (488)
Q Consensus       102 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~l~~~l~~~~~~~v~~~  178 (488)
                      .....+....    ..++.+.+++..+..+++...+..+.....    .+...+.   ..++...+..+ .+++..++..
T Consensus       157 l~~~~~s~~~----~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~  227 (1549)
T KOG0392|consen  157 LKHMDESLIK----ETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSV  227 (1549)
T ss_pred             HHhhhhHhhH----HHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHH
Confidence            8733222111    236777788877777777665555543321    1111111   12345555666 6777888888


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh--hHHHHHHHHHHHhccCCc--hh-HHHHHHhCCHHHHHHhcCC
Q 011316          179 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLRH  253 (488)
Q Consensus       179 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~--~~-~~~~~~~~~l~~L~~lL~~  253 (488)
                      |..++..............+..++..+...+..-+.  .-.......+..++....  +. .+.-.+.|+++.+...+.+
T Consensus       228 aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~  307 (1549)
T KOG0392|consen  228 AAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH  307 (1549)
T ss_pred             HHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence            888887766654333333334444444444432221  011111122222222221  00 0111224788888888888


Q ss_pred             CCcchHhHHHHHHhHhhcCCc
Q 011316          254 PSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      .=..++..++..+..+....+
T Consensus       308 ~i~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  308 TISSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            777888889998888877543

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=83.35  E-value=43  Score=31.96  Aligned_cols=154  Identities=16%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 011316          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .++..+.+..-..-+..++.++..|+++...-.-......++.+..+-+          ..+..+...++.||+|+.-++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            4455553433445556666777777776543333344444555554432          234678999999999999888


Q ss_pred             chhHHHHHHhCCHHHHHHhcCC----CCc-chHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhccc---------
Q 011316          232 NDKIQAVIEAGVCPRLVELLRH----PSP-SVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQN---------  296 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~----~~~-~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~---------  296 (488)
                      ........+......+.+.+..    +.+ .+...-++.|.-+..-... ..+.+.+.++++.+.+++.++         
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            7776777777666666665532    111 2333334444333332233 334445778888888888542         


Q ss_pred             -----chhhHHHHHHHHHHHHhcC
Q 011316          297 -----YKKSIKKEACWTISNITAG  315 (488)
Q Consensus       297 -----~~~~v~~~a~~~L~nl~~~  315 (488)
                           ++...-.+++.++.|+..+
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheeec
Confidence                 1223445777888888874

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=83.34  E-value=30  Score=41.30  Aligned_cols=252  Identities=13%  Similarity=0.095  Sum_probs=140.4

Q ss_pred             HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC----CChhh--hhchHHHHH
Q 011316          133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLFEQ--TRPALPALE  206 (488)
Q Consensus       133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~--~~~~~~~L~  206 (488)
                      ...+.++++++-......      ...+...+.......+++++..+..+++.+......    .....  ....+..+.
T Consensus       461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll  534 (2341)
T KOG0891|consen  461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL  534 (2341)
T ss_pred             HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence            444666776664322111      012333333333667888998887777766655422    11111  233333333


Q ss_pred             Hhh-ccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316          207 RLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  285 (488)
Q Consensus       207 ~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  285 (488)
                      .+- .+++++++......+.      ...-......+.+..+...+..+.-.++..+...+++++..++.....-+....
T Consensus       535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~  608 (2341)
T KOG0891|consen  535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL  608 (2341)
T ss_pred             HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence            332 2456776666555544      122233455566677777788888889999999999999988855444444334


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  365 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  365 (488)
                      +..+-.+-.+. ...++.....-+..+....+..+....+ ..+..++..+.+.+..+...+..++..|+..+..+....
T Consensus       609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~  686 (2341)
T KOG0891|consen  609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKW  686 (2341)
T ss_pred             HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhc
Confidence            44444444444 3444444444444444443444433333 356777777788888888889999999987665332222


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 011316          366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       366 l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~  400 (488)
                       .. ..+..+.+.+. ..+..-+..+++.+.++...
T Consensus       687 -~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  687 -VD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             -cc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence             12 34444444443 33444556677777777653

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.30  E-value=65  Score=33.97  Aligned_cols=251  Identities=12%  Similarity=0.115  Sum_probs=145.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      ..+=+.|+++....+-.+...+.++-...+.+   .+++ ..+=.|......++ ..+|...+++...    +....+.+
T Consensus        27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~Pfp---ifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q----~g~hln~v   97 (970)
T KOG1988|consen   27 MELDKGLRSGKTSEQPEAVVRFPRLFEKYPFP---IFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQ----SGKHLNKV   97 (970)
T ss_pred             HHHhhcccccccccchHHHHHHHHHHhhCCch---hhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhh----ccccchhh
Confidence            34566777777777777888888876654222   2333 23345556677777 6788777776653    22222222


Q ss_pred             Hh-CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316          113 ID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       113 ~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      .. ..++..+....++.|+.-|..++++++.+..--|+       .+..+.+++.-..+.+.--.+.++.+..+++....
T Consensus        98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk  170 (970)
T KOG1988|consen   98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK  170 (970)
T ss_pred             hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence            21 12333444455678999999999999998754443       34455566554344444445667777777665431


Q ss_pred             CCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhH
Q 011316          192 QPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN  268 (488)
Q Consensus       192 ~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~  268 (488)
                          ..-.++...+..++...  ..+..-.++.++..+......      -..+....+.++.. +..+-...-+.++.+
T Consensus       171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~  240 (970)
T KOG1988|consen  171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN  240 (970)
T ss_pred             ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence                11123333444455433  345566677777777654321      11333445555543 444445566777777


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ++...-..     -.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus       241 Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  241 LASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            77632211     224567788888866466777778888777764

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=83.12  E-value=1.5  Score=35.30  Aligned_cols=74  Identities=16%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh---HHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ---LQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~---v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+-|++.++.+++.|+..|-.++.+.+......+....++..|.+++.+.....   ++..++..+...+.
T Consensus        42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            567788889999999999999999999888654455566667778999999887654344   88888887776654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=82.40  E-value=75  Score=34.10  Aligned_cols=130  Identities=11%  Similarity=0.168  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  166 (488)
                      +.++..+.-.++++|-.+....+.     .+|.|++-|+- +...+|.+..-+++.+|..-     ..+-...++.+...
T Consensus       945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHH
Confidence            357788888899988755444332     37888887764 66778888888888887432     22233467888888


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          167 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      | .++++-++++++..|.+|........   ...++-.++..+-+.+++++..+=.+++.+....
T Consensus      1015 L-~Dp~~iVRrqt~ilL~rLLq~~~vKw---~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 L-CDPSVIVRRQTIILLARLLQFGIVKW---NGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             h-cCchHHHHHHHHHHHHHHHhhhhhhc---chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence            8 88899999999999999987642221   1222222333333567889999888888877543

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=81.95  E-value=16  Score=34.30  Aligned_cols=72  Identities=8%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~  399 (488)
                      ++..+.+-+.+.++.|...|+..+..++.++....+..+....+...|..+++ ...+.|++..-..+.....
T Consensus        46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse  118 (462)
T KOG2199|consen   46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE  118 (462)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            57778888999999999999999999999998888899999999999999998 5667777666555555543

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=81.18  E-value=85  Score=38.86  Aligned_cols=306  Identities=12%  Similarity=0.047  Sum_probs=140.3

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC------Cc--hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG------TS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~------~~--~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~  144 (488)
                      -.++.|+..+...+ ..+...+..++..+...      ++  ..+..+ -.++++.+.++..++...-+...+..|..+.
T Consensus       984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen  984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred             HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence            35677777777666 56666666655544320      11  111111 1133444444554444444444444444444


Q ss_pred             CCCchhHHHHHhcCChHHHHHHhcccc------cHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCChh
Q 011316          145 GDSPKCRDLVLSNGALMPLLAQFNEHA------KLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDE  215 (488)
Q Consensus       145 ~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~  215 (488)
                      .+.+...-.-.....+..+...+.+..      ..+.....+.-+...+...   +........+++..++.-+.+++..
T Consensus      1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred             hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence            443311111111223444444442111      1112222222222222112   2333344567788888888899999


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHh--CC--HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-------hHHHh---
Q 011316          216 VLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------TQCII---  281 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~---  281 (488)
                      |++.+..+|.+++.........+.+.  ..  ++.+..-+....-..+...+.++..+..-.+..       .....   
T Consensus      1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Confidence            99999999999986553222222211  11  111111112222223333344443333322211       11000   


Q ss_pred             ------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011316          282 ------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       282 ------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                            +..... +.+......   ....|..+..+++......+-..  ..-...+++..++..+....+++...+..+
T Consensus      1222 ~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1222 ALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred             Hhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence                  001111 222221110   22345666666665554222111  111234578888888999899999999999


Q ss_pred             HHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316          351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       351 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~  382 (488)
                      +...... +...-+.+++.+.-+.|+++-+..
T Consensus      1301 l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~ 1331 (3550)
T KOG0889|consen 1301 LRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHN 1331 (3550)
T ss_pred             HHhhhhc-cccccHHHHHhhHHHHHHhhhHhh
Confidence            9888654 233444455545555555554433

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=80.87  E-value=12  Score=28.80  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=51.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-----h-cCCCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-----Q-SHDNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-----~-~~~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+...+..+..+     . ...+..|+.++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~-----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~  106 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER-----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA  106 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence            4667777778889999999999999999887643           56666665555444332     2 23478899999


Q ss_pred             HHHHHHhc
Q 011316          445 VKILETYW  452 (488)
Q Consensus       445 ~~~l~~~~  452 (488)
                      ..+++.+.
T Consensus       107 ~~l~~~w~  114 (115)
T cd00197         107 IELVQLWA  114 (115)
T ss_pred             HHHHHHHh
Confidence            99988764

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.30  E-value=1.1e+02  Score=34.46  Aligned_cols=270  Identities=13%  Similarity=0.109  Sum_probs=117.2

Q ss_pred             cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316          172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      ..+++.....++.++...........-..+++.+-.+....   ..++...+..++.-++...-.....=.-.++++.+.
T Consensus       855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~  934 (1610)
T KOG1848|consen  855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL  934 (1610)
T ss_pred             cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence            44566677777777766541111111122222222222222   345556666666655543211111011114555555


Q ss_pred             HhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHh----hCCChHHHHHHhcccchhhHHHHHHHHHH--HHhcCCHHHHH
Q 011316          249 ELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII----NHQALPCLLDLLTQNYKKSIKKEACWTIS--NITAGNVNQIQ  321 (488)
Q Consensus       249 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~L~~lL~~~~~~~v~~~a~~~L~--nl~~~~~~~~~  321 (488)
                      ..-+. .+-.+...|+..++++...-.......-    ....++.+..  ..+ ...+-.+++|.+.  +++....+.+ 
T Consensus       935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~~~dsr- 1010 (1610)
T KOG1848|consen  935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADLCEDSR- 1010 (1610)
T ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHHhccch-
Confidence            55433 4556777777777776542111000000    1223333333  222 3345556665532  3332111111 


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH----hhcCCCCHHHHHHHHHHHHHH
Q 011316          322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC----DLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~----~ll~~~~~~v~~~al~~L~~l  397 (488)
                      .-+.+|++..+++++.++...+.. ++|..+-.-      ....|.+..-....-    +.++....+.....+.++.++
T Consensus      1011 ~eVRngAvqtlfri~~Shg~~l~~-~aW~s~~w~------vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGT-NAWASCCWL------VIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred             HHHhhhHHHHHHHHHhhhcccCCh-hHHHHHHHH------HHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence            223456677777777665443332 222222110      001111100000000    001122234555666677766


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                      +....+.-.     ..|.+....++.  ++.+..+..+.++++.-.|.+.+++..-.--+.+
T Consensus      1084 f~e~fk~ll-----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell~sii~~~ 1138 (1610)
T KOG1848|consen 1084 FSENFKLLL-----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELLFSIIEFG 1138 (1610)
T ss_pred             HHHHHHHHH-----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhc
Confidence            643222111     112234434332  5667777788899999999998887655433333

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=80.18  E-value=52  Score=30.83  Aligned_cols=182  Identities=14%  Similarity=0.157  Sum_probs=102.4

Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhc---cc----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011316          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLT---QN----YKKSIKKEACWTISNITAGNVNQIQAIIEAGI  328 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  328 (488)
                      .++...+..+.......+.. .. +...+++.+++ +|.   ..    .++++-.-....+..+-....+....+.+. +
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v  118 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V  118 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence            35667777777777644422 22 33356666665 331   11    133444444444444433223334444443 6


Q ss_pred             hHHHHHHHhcC---ChhHHHHHHHHHHHhccCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316          329 IGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       329 l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                      +...+.++..+   -|+.|..-...|.++...+       +++..+.     ++..+.-.+++++.++...++.++..++
T Consensus       119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll  193 (319)
T PF08767_consen  119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL  193 (319)
T ss_dssp             HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            66777777764   4778877777777776543       2222222     4667777788999999999999999998


Q ss_pred             HhhhhhhccCCCCccchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcCC
Q 011316          399 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ....+...        .+...|-+.-.++.+..+    .++.+......-..++.+++.-
T Consensus       194 ~~~~~~~~--------~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~  245 (319)
T PF08767_consen  194 NNVSKTNP--------EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL  245 (319)
T ss_dssp             HHHHH-SH--------HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence            77665110        133444444444444443    4555555556666788888854

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	488
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-127
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-127
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-125
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-124
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-123
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-123
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-123
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-108
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-108
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-108
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-108
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-108
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-107
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-106
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-106
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-106
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-106
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-106
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-106
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-106
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-106
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-106
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-106
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-35
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-33
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		8e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-23
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		7e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		8e-20

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/455 (79%), Positives = 392/455 (86%), Gaps = 3/455 (0%)
Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +  +LESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R
Sbjct: 69  VDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR 128
Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVA
Sbjct: 129 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188
Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPA
Sbjct: 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 248
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
           TVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +      
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                 PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD 
Sbjct: 369 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 428
Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKA
Sbjct: 429 RIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487
Query: 445 VKILETYWVXXXXXXXXXXXXATQAG--FGFAGNG 477
           VKILE YW+            A   G  F F   G
Sbjct: 488 VKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 522

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/449 (80%), Positives = 388/449 (86%), Gaps = 3/449 (0%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
           RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +            
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390
           PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450
           LEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE 
Sbjct: 397 LEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 451 YWVXXXXXXXXXXXXATQAG--FGFAGNG 477
           YW+            A   G  F F   G
Sbjct: 456 YWMDEEDDTMGATTVAAPQGATFDFGQGG 484

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 332
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           +++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 381 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 332
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           +++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 384 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  444 bits (1142), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/433 (56%), Positives = 298/433 (68%), Gaps = 7/433 (1%)
Query: 23  FIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL 82
           F  QLQ E LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+
Sbjct: 81  FYSQLQQE-LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
Query: 83  SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 142
             +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGN
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPA 201
           VAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     A
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258
Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
           LP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  P
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318
Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 321
           ALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN     
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLL 379
                    PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE 439
              D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDK 496
Query: 440 IYEKAVKILETYW 452
           IYEKA KI+ETY+
Sbjct: 497 IYEKAYKIIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 449 ETYW 452
           ETY+
Sbjct: 418 ETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENI+K GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 449 ETYW 452
           ETY+
Sbjct: 418 ETYF 421

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  438 bits (1127), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 208
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 447 ILETYW 452
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 208
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 447 ILETYW 452
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 449 ETYW 452
           ETY+
Sbjct: 419 ETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 449 ETYW 452
           ETY+
Sbjct: 419 ETYF 422

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 426
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 427 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 403 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 456
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 457 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 421 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 290/462 (62%), Gaps = 16/462 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 486
            ++E Y+              T  GF F   +G P   G FN
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 77  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 136
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AG     
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 256
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 375
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +K AAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 435
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 436 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 489
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 490 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S +   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL R D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 151 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+  GA+ PLLA        S+    LRN TWTLSN CR K P P  +     LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LL      ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV++L  A+F+ +KEA WA++N TSGG+ EQI +LV  G I+PL +LL   D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ+H+N  +Y+ ++
Sbjct: 368 IILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKASL 421
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  G+ F   +G P   G FNF
Sbjct: 422 SLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 420 NLIEKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 420 NLIEKYF 426

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 421 NLIEKYF 427

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 421 NLIEKYF 427

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 401 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 454
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 455 NLIEKYF 461

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 416 NLIEKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 416 NLIEKYF 422

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 393 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 446
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 447 NLIEKYF 453

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 133/232 (57%), Gaps = 12/232 (5%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALE 206
             V+  GAL P L Q        +L+ A W LSN   G      EQ +      ALPAL 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
           +L+ S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 202 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
                      LV LL +   +I +EA WA+SN  SGG NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 441 YEKAVKILE 449
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILETY 451
             LEK+E LQSH+N +I ++A + LE  
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 210
             V+  GAL P L Q        +L+ A W LSN    G  Q    +   AL  LE+L  
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 211 SNDDEVLTDACWALSYL 227
             ++++  +A  AL  L
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 202 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
                      LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 381 CPDPRIVTVCLEGLENI 397
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
            P++ + L        + A R    I++  + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILE 449
             LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           LP MV  + S D   Q +  +  RKL  I    +  I  VI +G +P  ++ LS  +   
Sbjct: 14  LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +
Sbjct: 71  LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 208
               V+  GAL P L Q        +L+ A W LSN    G  Q    +   A PALE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 209 IHSNDDEVLTDACWALSYL 227
             S ++++  +A  AL  +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILE 449
                +E LQS  N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L +L+ S D E   +A   L+ ++ G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
            + NI +G D   + I++   +  L+ LLT +    ++KEA   ++NI +G         
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                  LV LL + + E++KEAA A++N  S G +E IK +V  G ++ L  LL   D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
            +       L NI          G T  +    +AI DA G+E ++ L +  ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 445 VKILE 449
            + LE
Sbjct: 233 QRALE 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-53
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-52
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-117
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-73
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-69
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-57
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-115
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-84
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-79
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-71
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-90
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-53
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-80
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-77
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-66
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-72
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-62
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-68
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-29
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-61
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-26
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-61
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-57
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-29
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-50
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-41
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-45
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-39
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-09
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-22
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-08
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	3e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	4e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  553 bits (1427), Expect = 0.0
 Identities = 258/431 (59%), Positives = 307/431 (71%), Gaps = 4/431 (0%)

Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQ 89
               M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 208
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           IVTGDD+QTQ I+N  AL  LL LL  + K+SIKKEACWTISNITAGN  QIQ +I+A I
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 329 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
              L+++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L GLENIL+ GE E       G+N +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNG-TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438

Query: 449 ETYWVEEDEDE 459
           E Y+  EDED 
Sbjct: 439 EHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  183 bits (466), Expect = 9e-53
 Identities = 60/351 (17%), Positives = 130/351 (37%), Gaps = 56/351 (15%)

Query: 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA--GDSPKCRDLVLSN 157
                   N  +          + ++ S + + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 217
           G +                                            +E L    +  + 
Sbjct: 64  GVVARF-----------------------------------------VEFLKRKENCTLQ 82

Query: 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277
            ++ W L+ ++ G + + + VI+AG  P  +ELL      V   A+  +GNI     M  
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142

Query: 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337
             +++   LP LL L ++  + ++ + A W +SN+  G     +    +  +  L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
            ++ ++  +A WA+S  +  G N++I+ ++  G  + L +LL   D ++V+  L  + NI
Sbjct: 203 VSDTDVLADACWALSYLSD-GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261

Query: 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           +   +               Q I +   L+ + +L S     I ++A   +
Sbjct: 262 VTGDDI------------QTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  544 bits (1402), Expect = 0.0
 Identities = 215/467 (46%), Positives = 298/467 (63%), Gaps = 14/467 (2%)

Query: 26  QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
                S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + 
Sbjct: 53  GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT 112

Query: 86  DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
           D   +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AG
Sbjct: 113 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172

Query: 146 DSPKCRDLVLSNGALMPLLAQFNEH----AKLSMLRNATWTLSNFCRGK-PQPLFEQTRP 200
           D    RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +    
Sbjct: 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LP L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ 
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
           PALR +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +QI
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI 351

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           Q ++  G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
             D +I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +
Sbjct: 412 AKDTKIIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESV 465

Query: 441 YEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           Y+ ++ ++E Y+  E+E++     + T  GF F         G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 510

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 16/196 (8%)

Query: 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319
            P L T  +     D+ +     + ++  ++  +  N  +  + +A      + +     
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLE-SQLQATQAARKLLSREKQP 91

Query: 320 -IQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377
            I  II AG+I   V+ L   +   I+ E+AWA++N  S G++EQ K +V  G I     
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFIS 150

Query: 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 437
           LL  P   I    +  L NI  AG+                 +     ++ +  L +  +
Sbjct: 151 LLASPHAHISEQAVWALGNI--AGDGSAF----------RDLVIKHGAIDPLLALLAVPD 198

Query: 438 TEIYEKAVKILETYWV 453
                       T+ +
Sbjct: 199 LSTLACGYLRNLTWTL 214

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 13/148 (8%)

Query: 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361
                 T  +  A              +  +V  + +   E + +A  A     S     
Sbjct: 32  DSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 362 QIKFLVSQGCIKPLCDLLNCPD-PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI 420
            I  ++  G I      L   D   I       L NI     A      T       +A+
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI-----ASGTSEQT-------KAV 139

Query: 421 DDAEGLEKIENLQSHDNTEIYEKAVKIL 448
            D   +    +L +  +  I E+AV  L
Sbjct: 140 VDGGAIPAFISLLASPHAHISEQAVWAL 167

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  540 bits (1393), Expect = 0.0
 Identities = 254/450 (56%), Positives = 316/450 (70%), Gaps = 11/450 (2%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 208
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265

Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325

Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           IVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN  QIQA+I+A +
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 329 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
           I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 445 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503

Query: 447 ILETYWVEEDE--DEPLPPGDATQAGFGFA 474
           I+ETY+ EE++  DE + P +   AG  F 
Sbjct: 504 IIETYFGEEEDAVDETMAPQN---AGNTFG 530

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  184 bits (467), Expect = 3e-52
 Identities = 81/370 (21%), Positives = 145/370 (39%), Gaps = 16/370 (4%)

Query: 81  FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 140
              R +F      A     + +S +++          +P   + L+S     +  A    
Sbjct: 52  LAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKF 111

Query: 141 GNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQT 198
             +     +   D+V+  G +  L+    E+    +   A W L+N   G   Q      
Sbjct: 112 RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 171

Query: 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
             A+P   +L+++   EV   A WAL  ++  + D    V++      ++ L     PS+
Sbjct: 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL 231

Query: 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318
           +  A  T+ N+  G   Q    +  QALP L  L+     +    +ACW IS ++ G   
Sbjct: 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQE 290

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378
            IQA+I+  I   LV LL +    ++  A  A+ N  + G++ Q + +++ G +  L  L
Sbjct: 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLL 349

Query: 379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438
           L+ P   I       + NI  AG  E             QA+ DA  +  +  L      
Sbjct: 350 LSSPKENIKKEACWTISNIT-AGNTE-----------QIQAVIDANLIPPLVKLLEVAEY 397

Query: 439 EIYEKAVKIL 448
           +  ++A   +
Sbjct: 398 KTKKEACWAI 407

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  356 bits (914), Expect = e-117
 Identities = 64/445 (14%), Positives = 130/445 (29%), Gaps = 19/445 (4%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           I    + + A+V  + + +       T      LS  R   +  + +SG +P  ++ L  
Sbjct: 51  IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGS 109

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
                + F A   L N+          V   G +   V LL+             L  +A
Sbjct: 110 PV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             + + + ++L++G    L+     +    +L   +  L                  + A
Sbjct: 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L   +      ++ +  W L  LSD    +       G+   LV+LL     +V+  A  
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAG 285

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QI 320
            + N+   +      +     +  L+  + +   ++ I + A   + ++T+ +       
Sbjct: 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
            A+     +  +V LL         +A   +    +         L  QG I  L  LL 
Sbjct: 346 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLV 404

Query: 381 CPDPRIVTVCLEGLENILKAGE---------AEKNMGNTGGVNLFAQAIDDAEGLEKIEN 431
                       G                      +            I     +     
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464

Query: 432 LQSHDNTEIYEKAVKILETYWVEED 456
           L       I   A  +L     +++
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  243 bits (622), Expect = 1e-73
 Identities = 80/419 (19%), Positives = 143/419 (34%), Gaps = 26/419 (6%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIH 210
             V   G L   +        +  L   T  L     G  +  L         AL  ++ 
Sbjct: 134 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 211 SNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269
           +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329
               D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 330 GPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPR 385
             LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P   
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
            +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 368 PLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 414

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  233 bits (595), Expect = 1e-69
 Identities = 61/384 (15%), Positives = 136/384 (35%), Gaps = 21/384 (5%)

Query: 66  INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 125
            +  + +  +P   + L+ +D   +  +AA  +  ++   +    ++     V   VR +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 126 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184
            +  D +        L N++    +    +  +G + P L +       S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 123

Query: 185 NFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 243
           N    +    +  +    L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
              LV ++R  +   L+     V  +++        I+    +  L   L  +  + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 242

Query: 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
              WT+ N++     Q       G++G LV LL + +  +   AA  +SN T   + +  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNK 298

Query: 364 KFLVSQGCIKPLCDLL--NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421
             +   G I+ L   +        I    +  L ++    +  +         +   A+ 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE---------MAQNAVR 349

Query: 422 DAEGLEKIENLQSHDNTEIYEKAV 445
              GL  +  L    +     KA 
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  221 bits (565), Expect = 3e-65
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 19/344 (5%)

Query: 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166
                 +   A+P   +LL+     V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 167 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226
                 +   R    TL N    +   L       +PAL +++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 286
           L         AV  AG   ++V LL   +   L      +  +  G+      I+     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 287 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346
             L++++     + +       +  ++  + N+  AI+EAG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 406
             W + N +   + +       +G +  L  LL   D  +VT     L N+       K 
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK- 298

Query: 407 MGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 448
                        +    G+E +     ++ D  +I E A+  L
Sbjct: 299 -----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  198 bits (505), Expect = 8e-57
 Identities = 79/473 (16%), Positives = 145/473 (30%), Gaps = 50/473 (10%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLHLTDPS-QRLV 241

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 152 DLVLSNGALMPLL-AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP----ALPALE 206
            +V   G +  L+        +  +   A   L +      +    Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 267 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 305
                 + ++                        I     +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 477

Query: 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365
              +  + A +    +AI   G   PL  LL +    +   AA  +   +     +  K 
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 366 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK-------NMGNTGGVNLFAQ 418
           L S      L             + L+        G  +        + G  G   L   
Sbjct: 537 L-SVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMD 595

Query: 419 AIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGF 471
            + + E            +                 +D  + LPPGD+ Q  +
Sbjct: 596 PMMEHEMGGHHPGADYPVDGLPDLGHA---------QDLMDGLPPGDSNQLAW 639

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  114 bits (287), Expect = 2e-27
 Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291
           N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351
            +         +    T+ N++        AI ++G I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 411
            N        ++  +   G ++ +  LLN  + + + +  + L+ +     A  N  +  
Sbjct: 123 HNLLLHQEGAKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-----AYGNQES-- 174

Query: 412 GVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKIL 448
                   I  + G +  +  ++++   ++     ++L
Sbjct: 175 -----KLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  349 bits (896), Expect = e-115
 Identities = 65/437 (14%), Positives = 127/437 (29%), Gaps = 19/437 (4%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           I    + + A+V  + + +       T      LS  R   +  + +SG +P  ++ L  
Sbjct: 54  IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGS 112

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
                + F A   L N+          V   G +   V LL+             L  +A
Sbjct: 113 PV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             + + + ++L++G    L+     +    +L   +  L                  + A
Sbjct: 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L   +      ++ +  W L  LSD    +       G+   LV+LL     +V+  A  
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QI 320
            + N+   +      +     +  L+  + +   ++ I + A   + ++T+ +       
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
            A+     +  +V LL         +A   +    +         L  QG I  L  LL 
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV 407

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA---------QAIDDAEGLEKIEN 431
                       G                 G                 I     +     
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467

Query: 432 LQSHDNTEIYEKAVKIL 448
           L       I   A  +L
Sbjct: 468 LLYSPIENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  268 bits (688), Expect = 2e-84
 Identities = 76/418 (18%), Positives = 138/418 (33%), Gaps = 24/418 (5%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 210
             V   G L   +        +  L   T  L     G     L         AL  ++ 
Sbjct: 137 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 330
              D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 331 PLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
            LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P    
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 372 LIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  255 bits (654), Expect = 2e-79
 Identities = 75/443 (16%), Positives = 141/443 (31%), Gaps = 46/443 (10%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 160

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 150
                 L  +A G  E+  +++  G     V ++ + T   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 220 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 276

Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI--PALRTVGN 268
           S+D  V+T A   LS L+         V + G    LV  +        I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 269 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQIKF 365
            G I  LV LL+ A  + ++  +   +                                 
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455

Query: 366 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425
           +     I     LL  P   I  V    L  + +  EA             A+AI+    
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 502

Query: 426 LEKIENLQSHDNTEIYEKAVKIL 448
              +  L    N  +   A  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  235 bits (600), Expect = 2e-71
 Identities = 61/354 (17%), Positives = 120/354 (33%), Gaps = 22/354 (6%)

Query: 97  ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156
           A+ N+ +         +   A+P   +LL+     V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEV 216
              +  ++        +   R    TL N    +   L       +PAL +++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 336
              I+       L++++     + +       +  + +   +   AI+EAG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396
            +    + +   W + N +   + +       +G +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 397 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 448
           +       K              +    G+E +     ++ D  +I E A+  L
Sbjct: 293 LTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  196 bits (501), Expect = 4e-57
 Identities = 67/371 (18%), Positives = 125/371 (33%), Gaps = 34/371 (9%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 244

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 152 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRGKPQP----LFEQTRPALPALE 206
            +V   G +  L+        +  +   A   L +      +        +    LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 326
                 + ++ + I+                      E C    +I A +V+    I   
Sbjct: 422 TQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRGL 459

Query: 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 386
             I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  +  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 387 VTVCLEGLENI 397
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  119 bits (300), Expect = 4e-29
 Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 28/286 (9%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 90
           L  +V  + SDD N+   A      L +         V Q G +   +  +    D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 91  QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
              A  AL ++ S   E       V  H  +P+ V+LL  P+     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           P     +   GA+ P L Q    A     R  +   +     +                 
Sbjct: 387 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 430

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
                 +E++     AL  L+   +++I  +      P  V+LL  P  ++   A   + 
Sbjct: 431 ----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313
            +    +   + I    A   L +LL  +  + +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 22/131 (16%), Positives = 34/131 (25%), Gaps = 6/131 (4%)

Query: 14  LLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG 73
           LL          +                   I    T     L     +     +    
Sbjct: 405 LLVRAHQD--TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLN 460

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
            +P F++ L       +Q  AA  L  +A    E    +   GA      LL S  + V 
Sbjct: 461 TIPLFVQLLYSPI-ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVA 518

Query: 134 EQAVWALGNVA 144
             A   L  ++
Sbjct: 519 TYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  293 bits (753), Expect = 1e-97
 Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 14/249 (5%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LP + + ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           QA+I+AG +  LV LL +   +I +EA WA+SN  S G NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238

Query: 441 YEKAVKILE 449
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  275 bits (705), Expect = 2e-90
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 4/245 (1%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
               LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  + 
Sbjct: 10  HGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN- 67

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
            Q+  EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A   
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALE 206
            +    V+  GAL P L Q        +L+ A W LSN   G   Q        ALPAL 
Sbjct: 128 NEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+ S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246

Query: 267 GNIVT 271
             + +
Sbjct: 247 EKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  193 bits (492), Expect = 1e-58
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 44/282 (15%)

Query: 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175
             +P   + L+S     +  A      +  D  +    V+  GAL               
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56

Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235
                                      PAL +L+ S ++++L +A WALS ++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295
           QAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q +I+  ALP L+ LL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148

Query: 296 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355
           +  + I +EA W +SNI +G   QIQA+I+AG +  LV LL +   +I +EA WA+SN  
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208

Query: 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           SG  NEQ + +   G ++ L  L +  + +I     E LE +
Sbjct: 209 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  269 bits (689), Expect = 1e-88
 Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           QA+I+AG +  LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 381 CPDPRIVTVCLEGLENI 397
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  177 bits (452), Expect = 2e-53
 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 11/209 (5%)

Query: 68  EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 127
                  +P+ ++ L+  D  Q    A   L+ IASG +E  + VID GA+P  V+LLSS
Sbjct: 7   HHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187
           P + + ++A+WAL N+A    +    V+  GAL  L+          +L+ A W LSN  
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIA 124

Query: 188 RGKPQPLFEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 242
            G      EQ +      ALPAL +L+ S ++++L +A WALS ++ G N++ QAV EAG
Sbjct: 125 SGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVT 271
              +L +L  H +  +   A   +  + +
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  265 bits (678), Expect = 1e-80
 Identities = 71/423 (16%), Positives = 136/423 (32%), Gaps = 26/423 (6%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFP 88
           +            D + Q   T   R      R+    E +  G+     +F  +     
Sbjct: 67  QGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNV 121

Query: 89  QLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           Q   E +  L +      +      +   A+P   +LL+     V  +A   +  ++   
Sbjct: 122 QRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE 181

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
                ++ S   +  ++        +   R  + TL N    +   L       +PAL  
Sbjct: 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVN 241

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           ++ S  D VL  A   L  L         AV  AG   ++V LL   +   L      + 
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
            +  G+      I+       L++++ + Y           +  + +   +   AI+EAG
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 360

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
            +  L   L +    + +   W + N +   + +       +G +  L  LL   D  +V
Sbjct: 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVV 416

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAV 445
           T     L N+       K              +    G+E +     ++ D  +I E A+
Sbjct: 417 TCAAGILSNLTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAI 464

Query: 446 KIL 448
             L
Sbjct: 465 CAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  257 bits (658), Expect = 1e-77
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 46/453 (10%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 293

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDSPKC 150
                 L  +A G  E+  +++  G     V ++ + T + +       L  ++      
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352

Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 353 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 409

Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 268
           S+D  V+T A   LS L+         V + G    LV  +        +  PA+  + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 269 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 528

Query: 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQIKF 365
            G I  LV LL+ A  + ++  +   +                                 
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588

Query: 366 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425
           +     I     LL  P   I  V    L  + +  EA             A+AI+    
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 635

Query: 426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDED 458
              +  L    N  +   A  +L     ++ +D
Sbjct: 636 TAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  225 bits (575), Expect = 7e-66
 Identities = 74/431 (17%), Positives = 142/431 (32%), Gaps = 43/431 (9%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
             A+V  + +      L  T++  K+LS+  S     ++++G +      L  D   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 377

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 152 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALPALE 206
            +V   G +  L+        +  +   A   L +        +      +    LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 326
                 + ++ + I+                      EAC    +I A +++    I   
Sbjct: 555 TQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIRGL 592

Query: 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 386
             I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  +  +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
            T     L  + +    +        V L          L + E +  ++  ++      
Sbjct: 651 ATYAAAVLFRMSEDKPQDYKKR--LSVELT-------SSLFRTEPMTWNETGDLGLDIGA 701

Query: 447 ILETYWVEEDE 457
             E     +D+
Sbjct: 702 QGEPLGYRQDD 712

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  233 bits (595), Expect = 1e-72
 Identities = 59/343 (17%), Positives = 111/343 (32%), Gaps = 34/343 (9%)

Query: 47  QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106
           Q+ A  +          P +++                         A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 107 ENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVWALGNVAGDSPKCRDLVL 155
           E+   + + G +     LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR--PALPALERL-IHSN 212
           S    M  L    +     + +     L N          +  R   ++ AL    +   
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 213 DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALR 264
            +  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
            V +++  ++   Q +  +  L  LL  L +++  +I   AC T+ N++A N    +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 367
           + G +  L NL+ +    I   +A A+ N  +    +     +
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  207 bits (528), Expect = 1e-62
 Identities = 55/325 (16%), Positives = 108/325 (33%), Gaps = 23/325 (7%)

Query: 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 165
           +           +      + +P +     AV  L  ++ D  + R  +   G L  +  
Sbjct: 22  TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80

Query: 166 ----------QFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSND 213
                       N+H  +++ R A   L+N   G           +  + AL   + S  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 214 DEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-V 270
           +++       L  LS   +   +  + E G    L+E        S L   L  + N+  
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 271 TGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAII 324
              + +        AL  L+  LT   Q    +I +     + N++   A N +  Q + 
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           E   +  L+  L +    I   A   + N ++  + +  + L   G +  L +L++    
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHK 319

Query: 385 RIVTVCLEGLENILKAGEAEKNMGN 409
            I       L N++    A+    N
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  111 bits (279), Expect = 3e-27
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           + A+VA + S+  ++Q    +  R L           + + G V   +E           
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 92  FEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSP----TDDVREQAVWALGNVAG- 145
                AL N+++  +EN   +    GA+   V  L+      T  + E     L NV+  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 146 --DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPA 201
              +   R ++  N  L   L Q  +   L+++ NA  TL N     P  Q        A
Sbjct: 249 IATNEDHRQILRENNCL-QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVC 244
           +  L+ LIHS    +   +  AL  L        K   ++  G  
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 262 ALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
            L  +  I    +        +   +    + +     +     A   +  ++    ++ 
Sbjct: 9   MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR- 66

Query: 321 QAIIEAGIIGPLVNLL-----------LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 369
            A+ E G +  +  LL            +    +++ A  A++N T G    +      +
Sbjct: 67  HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126

Query: 370 GCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           GC++ L   L      +  V    L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  224 bits (571), Expect = 5e-68
 Identities = 67/451 (14%), Positives = 134/451 (29%), Gaps = 71/451 (15%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 195 FEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 238
            E    ALP L   +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 239 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 298
             +G+   L+  +++   +           +    ++  +           L+   +N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 299 KSIKKEACWTISNITAGNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKK 345
                  C++  +    N N    +               +  I   +NL+  ++ +   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 346 EAA-WAISNATSGGSN----EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400
           EA   A+ N T+              + +  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 401 GEAEKNMGNTGGVNL----------------------------------FAQAIDDAEGL 426
               + MGN     +                                   A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 427 EKIENL-QSHDNTEIYEKAVKILETYWVEED 456
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  119 bits (298), Expect = 3e-29
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 72  SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 131
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 132 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------KLSMLR 177
            R      E  +  L N++                    A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 178 NATWTLSNFCRG-KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-- 234
           N    L       K       +      L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 235 ---IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 292 LLTQNYKKSIKKE-----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 345
           LLT +   +   E     AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 346 EAAWAISN 353
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =   99 bits (248), Expect = 8e-23
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 25/230 (10%)

Query: 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 259
             +P   + + S D++      + + +         Q V + G   +LV+LLR P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319
             A   + N+V               +   + LL +     I+K+    + N+++ +   
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL- 120

Query: 320 IQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNEQI 363
            +  + A  +  L + ++                  + E+   A   + N +S  +  + 
Sbjct: 121 -KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG-RQ 178

Query: 364 KFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNM 407
                 G I  L   +         D + V  C+  L N+    +AE   
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.3 bits (210), Expect = 6e-18
 Identities = 34/309 (11%), Positives = 85/309 (27%), Gaps = 25/309 (8%)

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 214
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQ 58

Query: 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 273
            V   A  AL  L   +                V LLR   +  +       + N+ + D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 274 DMQTQCIINHQALPCLLDLL---------------TQNYKKSIKKEACWTISNITAGNVN 318
           +++ +  +   ALP L D +                +     +   A   + N+++ +  
Sbjct: 119 ELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378
           +      +G+I  L+  + N     + +     +      +             + L   
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 379 LNCPDPRI-VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHD 436
                     T C     + +     +  +         +  +  ++ +   +  +    
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296

Query: 437 NTEIYEKAV 445
                E   
Sbjct: 297 KDATLEACA 305

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  209 bits (532), Expect = 3e-61
 Identities = 73/457 (15%), Positives = 147/457 (32%), Gaps = 66/457 (14%)

Query: 57  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116
           L S+ +  P     +   +P  I  L       ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175
            +P+ V LL  P  +V   A  AL N++ G     +  + +   +  L+    +   + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI------------------HSNDDEVL 217
               T TL N          E    AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH----------------------- 253
           T+    L  +S   ++  + + E  G+   L+ +++                        
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 254 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305
                    +      A     N  T      + +   + +   + LL ++   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 306 CWTISNITAGNVNQI----QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361
              I N+ AG          A+ +   +  + +LL N    + K A+ A+ N      + 
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA---VDA 386

Query: 362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421
           + K L+ +  I  L   L            E  + ++        +         A+ + 
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEV--IAENLEAAKKLR 442

Query: 422 DAEGLEKIENLQSHDNTE--IYEKAVKILETYWVEED 456
           + +G+EK+  +    N        A  +L+T W  ++
Sbjct: 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  110 bits (276), Expect = 4e-26
 Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 42/315 (13%)

Query: 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232
               R +  +L +  +G P P   + +P LP +  ++    D V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-IINHQALPCLLD 291
                V +    P LV LL HP   V + A   + NI  G D   +  I N   +P L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------------ 339
           LL +     + +    T+ N+++ +  +++ +  A  +  L + ++              
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNEDC 198

Query: 340 ------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL------NCPDPRIV 387
                    +    A  + N +S  S  + K     G +  L  ++         D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 388 TVCLEGLENILKAGEAEKNMGN-------------TGGVNLFAQAIDDAEGLEK-IENLQ 433
             C+  L N+      E                          + +   E +   I  L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 434 SHDNTEIYEKAVKIL 448
                 I E +   +
Sbjct: 319 ESKTPAILEASAGAI 333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  108 bits (271), Expect = 2e-25
 Identities = 57/387 (14%), Positives = 113/387 (29%), Gaps = 70/387 (18%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDFPQL 90
           +P +V  +    + + L A    +  +S  R       +     VP  +  L +     L
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------------TDDV 132
                  L N++S   ++ ++ I   A+      +  P                   + V
Sbjct: 151 TEVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208

Query: 133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNF 186
                  L NV+ +  + R  +     L+  L    +           ++ N    L N 
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268

Query: 187 CR---------------------------GKPQPLFEQTRPALPALERLIHSNDDEVLTD 219
                                         +   L  Q       +  L  S    +L  
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328

Query: 220 ACWALSYLSDGT----NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275
           +  A+  L  G          A+ +      + +LL +    V+  A   + N+      
Sbjct: 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-- 386

Query: 276 QTQCIINHQALPCLLDLLT-------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           + + +I   A+P L+  L         N+ +        TI+ + A N+   + + E   
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446

Query: 329 IGPLVNLLLNAEFEIK--KEAAWAISN 353
           I  LV +  +     K  + AA  +  
Sbjct: 447 IEKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 98.5 bits (244), Expect = 5e-22
 Identities = 58/379 (15%), Positives = 116/379 (30%), Gaps = 35/379 (9%)

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPAL 205
            K +  V     +  L+   +   K  +   A   L N   G+ Q   +  +    +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 206 ERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
            RL+  + D ++       L  LS   + K++ V  A     L + +  P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC--------WTISNITAGN 316
                           +      CL ++ ++  +   K   C        + +       
Sbjct: 197 DCKPRHIEW-----ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK 251

Query: 317 VNQIQAIIEAGIIGPLVNLLLNAEFEI-----KKEAAWAISNATSGGSNEQIKFLVSQGC 371
            +  + +     +  L NL      EI      +EAA  ++N T        + L     
Sbjct: 252 DSDSKLVENC--VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309

Query: 372 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 430
           ++    LL     P I+      ++N+                     A+   + L  I 
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY--------IRSALRQEKALSAIA 361

Query: 431 NLQSHDNTEIYEKAVKILE 449
           +L ++++  + + A   L 
Sbjct: 362 DLLTNEHERVVKAASGALR 380

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  205 bits (523), Expect = 6e-61
 Identities = 61/319 (19%), Positives = 110/319 (34%), Gaps = 27/319 (8%)

Query: 67  NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126
            +      + +    +           A   L  + S   E+   + + G +     LL 
Sbjct: 142 WQEAHEPGMDQDKNPMPAPV-EHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQ 199

Query: 127 -----------SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLS 174
                        +  +R  A  AL N+  GD      L    G +  L+AQ        
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESED 258

Query: 175 MLRNATWTLSNFCRGKPQPLFEQTR--PALPAL-ERLIHSNDDEVLTDACWALSYLS-DG 230
           + +     L N          +  R   ++ AL E  +    +  L     AL  LS   
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALRTVGNIVTGDDMQTQCIINH 283
           T +K       G    LV  L + S +  +         LR V +++  ++   Q +  +
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 343
             L  LL  L +++  +I   AC T+ N++A N    +A+ + G +  L NL+ +    I
Sbjct: 379 NCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437

Query: 344 KKEAAWAISNATSGGSNEQ 362
              +A A+ N  +    + 
Sbjct: 438 AMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  196 bits (500), Expect = 1e-57
 Identities = 73/427 (17%), Positives = 147/427 (34%), Gaps = 65/427 (15%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDD 86
           ++E + ++++ + + D   + D +   R LL++  S      + QSG +P  I+ L  +D
Sbjct: 30  KVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQSGCLPLLIQLLHGND 83

Query: 87  FPQ-----------LQFEAAWALTNIASGTSENTRVVIDHGAVPI--------------- 120
                          +  A+ AL NI     ++ R   +   + +               
Sbjct: 84  KDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQ 143

Query: 121 ---------FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL------- 164
                        + +P +     AV  L  ++ D  + R  +   G L  +        
Sbjct: 144 EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDC 202

Query: 165 ---AQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTD 219
                 N+H  +++ R A   L+N   G    +      +  + AL   + S  +++   
Sbjct: 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262

Query: 220 ACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-VTGDDMQ 276
               L  LS   +   +  + E G    L+E        S L   L  + N+     + +
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322

Query: 277 TQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAIIEAGIIG 330
                   AL  L+  LT   Q    +I +     + N++   A N +  Q + E   + 
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382

Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390
            L+  L +    I   A   + N ++  + +  + L   G +  L +L++     I    
Sbjct: 383 TLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 441

Query: 391 LEGLENI 397
              L N+
Sbjct: 442 AAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  185 bits (471), Expect = 2e-53
 Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 26/319 (8%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
            +     +      + +   +    A     KL   E       + + G +    E L  
Sbjct: 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQV 200

Query: 85  D----------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVR 133
           D              L+  A  ALTN+  G   N   +    G +   V  L S ++D++
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260

Query: 134 EQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT---WTLSNFCRG 189
           +     L N++       +  +   G++  L+    E  K S L++     W LS  C  
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320

Query: 190 KPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAG 242
               +      AL  L   +     +N   ++      L  +S       D  Q + E  
Sbjct: 321 NKADICAVD-GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302
               L++ L+  S +++  A  T+ N+   +    + + +  A+  L +L+  +  K I 
Sbjct: 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIA 438

Query: 303 KEACWTISNITAGNVNQIQ 321
             +   + N+ A    + +
Sbjct: 439 MGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  119 bits (299), Expect = 2e-29
 Identities = 52/329 (15%), Positives = 100/329 (30%), Gaps = 66/329 (20%)

Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD------------VREQAVW 138
           + + +  L  + S + ++   +   G +P+ ++LL     D             R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 139 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198
           AL N+    P  +        L  LL Q   +                C        E  
Sbjct: 105 ALHNIIHSQPDDKRGRREIRVL-HLLEQIRAY-------------CETCWE----WQEAH 146

Query: 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
            P +   +  + +  +  +  A   L  LS     +  A+ E G    + ELL+      
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEM- 204

Query: 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318
                                            L   +Y  ++++ A   ++N+T G+V 
Sbjct: 205 -------------------------------YGLTNDHYSITLRRYAGMALTNLTFGDVA 233

Query: 319 QIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377
               +    G +  LV  L +   ++++  A  + N +        K L   G +K L +
Sbjct: 234 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293

Query: 378 LL-NCPDPRIVTVCLEGLENILKAGEAEK 405
                     +   L  L N+       K
Sbjct: 294 CALEVKKESTLKSVLSALWNLSAHCTENK 322

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  172 bits (436), Expect = 4e-50
 Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 7/240 (2%)

Query: 70  IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSP 128
           + S  +P       +    Q +  A   L ++     +N        G   +  R L + 
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG 94

Query: 129 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188
              +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   A + +S   R
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 189 GKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 246
            +      F +       L R +     ++   + + L  L  G  +    +   G+  +
Sbjct: 155 EQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 306
           LV L+R          L  + ++VT      +     +    L +LL    +   + E  
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  147 bits (373), Expect = 5e-41
 Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 8/263 (3%)

Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257
           ++P  P       + D +    A   L+ L +  ++       +G+   +   L   +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317
           +   A + +G          + ++   AL  LL LL ++   +++ +A + IS +     
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377
             +   +       L+  +     ++K ++A+ + N    G  E    L S G ++ L  
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVA 216

Query: 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD- 436
           L+           L  L +++              + L  + +       + + LQ H+ 
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL-EELLR-----HRCQLLQQHEE 270

Query: 437 NTEIYEKAVKILETYWVEEDEDE 459
             E  E   K+L+T +    +D 
Sbjct: 271 YQEELEFCEKLLQTCFSSPADDS 293

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 92.0 bits (228), Expect = 6e-21
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 4/182 (2%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 99
           +    ++  A               I  +V+  G + + +  L RD    ++ +A +A++
Sbjct: 93  AGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159
            +           +      + +R +      ++ ++ + L N+    P+ +  + S G 
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 219
           +   L             +    L +     PQ + E   P L   E L H        +
Sbjct: 211 V-QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269

Query: 220 AC 221
             
Sbjct: 270 EY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  167 bits (423), Expect = 7e-45
 Identities = 61/447 (13%), Positives = 133/447 (29%), Gaps = 61/447 (13%)

Query: 45  NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104
           +    A+    ++                 +  +I+        + +     A+T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 105 TSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 163
             +   +VV   G + + + + ++  +  +  A   L   +         +   G  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDI 334

Query: 164 LAQFNEHAKLSMLRNATWTLSNFC-----RGKPQPLFEQTRPALPALER---LIHSNDDE 215
           L +        +   A   L             +P  +     L    R   +    D +
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275
           +   A   L+YL+     K + + +      L++L R  + S L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 276 QT--------------------------------QCIINHQALPCLLDLLTQNYKKSIKK 303
           Q                                   + N      L  L       + ++
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQE 513

Query: 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-Q 362
                ++ +  G       +++ G +  L+ + L    + K+ A  A++      + E  
Sbjct: 514 LIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 363 IKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421
                S   I+PL +LL            L  L N+    E+ +            Q I 
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR------------QRII 620

Query: 422 DAEGLEKIENLQSHDNTEIYEKAVKIL 448
             +G+ KIE     D+  +   A + L
Sbjct: 621 KEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  151 bits (381), Expect = 2e-39
 Identities = 65/474 (13%), Positives = 133/474 (28%), Gaps = 91/474 (19%)

Query: 27  LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD 86
           L+L             D++I+  A       L+++       +     +   ++     +
Sbjct: 376 LKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMDLARGGN 434

Query: 87  FPQLQFEAAWALTNIASGT--------------------------------SENTRVVID 114
                +       N+ +                                  ++   V+ +
Sbjct: 435 -QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493

Query: 115 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 174
            G       L  + + + +E     L  V G   + R  V+  G +  LL    E  +  
Sbjct: 494 EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKG 552

Query: 175 MLRNATWTLSNFCRGK-PQPLFEQTRP--ALPALERLIHSNDDEVLT-DACWALSYLSDG 230
             R+AT  L+       P+  F   R    +  L  L+  +   +   ++  AL+ L+  
Sbjct: 553 K-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290
                Q +I+     ++   L      +                                
Sbjct: 612 NESVRQRIIKEQGVSKIEYYLMEDHLYL-------------------------------- 639

Query: 291 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350
                       + A   + N+                +  L  L  + + E     A A
Sbjct: 640 -----------TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGA 688

Query: 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG-EAEKNMGN 409
           ++  TS       K L     +  L  L+  P P +    +  + N++ AG E  K +  
Sbjct: 689 LAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE 748

Query: 410 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP 463
           T  + L +       GL ++ +       E+  + +   E Y + E  D    P
Sbjct: 749 TDIMELLS-------GLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIP 795

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 84.9 bits (209), Expect = 2e-17
 Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 3/210 (1%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
                   ++      L S+  S     +I+   V +   +L  +D   L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASMNESV-RQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCN 649

Query: 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160
           +            ++  V     L     ++       AL  +   S KC + +L+  + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTD 219
           + +L     +   ++       + N      +   +      +  L  L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (353), Expect = 8e-39
 Identities = 38/214 (17%), Positives = 63/214 (29%), Gaps = 20/214 (9%)

Query: 75  VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
           + R +  L  D   P     AA  + +     SE  + V     +   ++LL    +DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 134 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193
                AL N+  +    +  V     +  LL    +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 194 LFEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 237
                  AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 238 VIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           +    G+   LV  +R           +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  100 bits (251), Expect = 1e-24
 Identities = 30/204 (14%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 200 PALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257
             L     ++ ++      ++ A   + +     ++  + V +     +L++LL+  +  
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317
           V       + N+V  D+     +     +P LL +L Q      KK+    + N+++ + 
Sbjct: 68  VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

Query: 318 NQIQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNE 361
            +   I EA  +  L   ++                  +F+I       + N +S G++ 
Sbjct: 128 LKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 362 QIKFLVSQGCIKPLCDLLNCPDPR 385
           +       G I  L   +      
Sbjct: 186 RKAMRRCDGLIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 29/210 (13%), Positives = 60/210 (28%), Gaps = 41/210 (19%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           QL  +  ++  +   + ++Q       R  L  E +    EV +   VPR ++ L +   
Sbjct: 50  QLRGILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRD 108

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
            + + +    L N++S   +  + ++   A+      +  P                   
Sbjct: 109 LETKKQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIP------------------- 147

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPAL 205
                    +G       + N      +  N T  L N             +    + +L
Sbjct: 148 --------FSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSL 199

Query: 206 ERLIHSNDDEVLTDA-------C--WALSY 226
              +     +   D        C    LSY
Sbjct: 200 VHYVRGTIADYQPDDKATENCVCILHNLSY 229

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 315 GNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 372
           G+   ++  +E       V++L   +        AA  I +      +E  K +     I
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54

Query: 373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IEN 431
             L  LL   +  +       L N+       ++  N          + +  G+ + ++ 
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNL-----VFEDNDNK-------LEVAELNGVPRLLQV 102

Query: 432 LQSHDNTEIYEKAVKIL 448
           L+   + E  ++   +L
Sbjct: 103 LKQTRDLETKKQITGLL 119

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 94.8 bits (235), Expect = 4e-22
 Identities = 40/253 (15%), Positives = 88/253 (34%), Gaps = 27/253 (10%)

Query: 18  MDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 77
           ++ +  + +     L  ++  +  D   +  +A +    +          E +   ++ +
Sbjct: 20  LEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT------REDLYEPMLKK 73

Query: 78  FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 137
               L + +   L  E A A   +A    E  + +I     P+         +  +    
Sbjct: 74  LFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVS 128

Query: 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 197
           +AL  +A  +P     ++ +   M +L+  N   KL+ L      +        + +   
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----NFIEAMGENSFKYV--- 179

Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257
             P LP +  L+H  D+ V   A  AL +L+   +   + VI      + +E L   S  
Sbjct: 180 -NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSL 232

Query: 258 VLIPALRTVGNIV 270
           V       +  ++
Sbjct: 233 VNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 77.8 bits (191), Expect = 2e-16
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
           V+ + IE L  DD   +   A   +  IA    +    ++      +F  L  S    + 
Sbjct: 33  VLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 134 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193
           ++   A G +A + P+         +++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
                   +     ++ S + E    A   +  + + +   +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 254 PSPSVLIPALRTVGNIVTGDD 274
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 76.8 bits (189), Expect = 7e-16
 Identities = 45/323 (13%), Positives = 87/323 (26%), Gaps = 69/323 (21%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
                   L  D     +  +A  L                  AV + +   S      R
Sbjct: 24  NDDELFRLL-DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71

Query: 134 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193
           +   + LG +     KC D V +      L           +   A  + +  C+  P  
Sbjct: 72  DIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIY 125

Query: 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
             +     +   +         V     +A+S ++D               P L+ LL+ 
Sbjct: 126 SPK----IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170

Query: 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313
           P+  V   A   +      +              C +++L     + ++ EA   +S   
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK 220

Query: 314 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 373
              V           +  L + L      +  +   A               L  +  + 
Sbjct: 221 DKRV-----------LSVLCDELKKN--TVYDDIIEAAGE------------LGDKTLLP 255

Query: 374 PLCDLL-NCPDPRIVTVCLEGLE 395
            L  +L    D  I+T  ++ L+
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 36/342 (10%), Positives = 89/342 (26%), Gaps = 81/342 (23%)

Query: 125 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184
           +S+     + +A    G          D       L  LL   + ++      ++   L 
Sbjct: 1   MSNT--YQKRKASKEYGLYNQCKKLNDD------ELFRLLD--DHNSLKR--ISSARVLQ 48

Query: 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 244
                         + A+          +        + L  +        +   +    
Sbjct: 49  LR----------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFN 93

Query: 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 304
                 L   S  V   A+ +       + + +      + +             ++++ 
Sbjct: 94  ILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKS-TNVRRA 147

Query: 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 364
             + IS I            +   I  L+NLL +   +++  AA+AI+            
Sbjct: 148 TAFAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYD------- 189

Query: 365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD-- 422
              +        ++L   +  +    + GL              +   +++    +    
Sbjct: 190 ---NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR----------KDKRVLSVLCDELKKNT 236

Query: 423 -----AEGLEKIEN----------LQSHDNTEIYEKAVKILE 449
                 E   ++ +          L   D+ EI   A+  L+
Sbjct: 237 VYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 46/212 (21%)

Query: 57  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116
           + S  +    N +    +V +       D    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 176
            +P+ + LL  P  DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 236
             A   LS            + +  L  L   +    + V  D   A   L D       
Sbjct: 210 IEAIIGLSYR----------KDKRVLSVLCDEL--KKNTVYDDIIEAAGELGD------- 250

Query: 237 AVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 267
                 + P L  +L       ++  A+  + 
Sbjct: 251 ----KTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 57/245 (23%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           V  +I+ L  D    ++  AA+AL  I            D  AV   ++ L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A  ALG +  +            A+ PL+    +     + ++A   L           
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 108

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L+  
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
              V   A   +G I  G +         +    +  L  +      +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203

Query: 315 GNVNQ 319
            N + 
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 56/249 (22%)

Query: 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 173
           D   V ++++ L   +  VR  A +ALG +     +  +       L+  L    +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKAL----KDEDA 64

Query: 174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 233
            + R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 293
             +  +E      L++ L+     V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 294 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353
            ++    +++ A   +  I               +   +  L        +K A   +  
Sbjct: 153 -KDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 354 ATSGGSNEQ 362
             S   +  
Sbjct: 201 HKSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 65/475 (13%), Positives = 142/475 (29%), Gaps = 136/475 (28%)

Query: 23  FIIQLQLESLPAMVAGVWS----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 78
           F+     + +  M   + S    D   +  DA +   +L     S          +V +F
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKF 82

Query: 79  IEFLSRDDFPQLQFEAAWALTNIAS---GTSENTRVVID-----HGAVPIFVRLLSSPTD 130
           +E + R ++        + ++ I +     S  TR+ I+     +    +F         
Sbjct: 83  VEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKY 129

Query: 131 DV-REQAVWALGNVA-GDSPKCRDLVLSNGALMP------LLAQ--FNEHAKLSMLRNAT 180
           +V R Q    L        P  +++++ +G  +       +      +   +  M     
Sbjct: 130 NVSRLQPYLKLRQALLELRPA-KNVLI-DG--VLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 181 W-TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 239
           W  L N C   P+ + E        L++L++  D           +  SD +   I+  I
Sbjct: 186 WLNLKN-CN-SPETVLEM-------LQKLLYQIDPN--------WTSRSDHS-SNIKLRI 227

Query: 240 EAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 298
            + +   L  LL+     + L+        ++   ++Q     N   L C + L T+   
Sbjct: 228 HS-IQAELRRLLKSKPYENCLL--------VL--LNVQNAKAWNAFNLSCKILLTTRF-- 274

Query: 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358
           K +          ++A     I           L +  +        E    +       
Sbjct: 275 KQV-------TDFLSAATTTHI----------SLDHHSMT--LT-PDEVKSLLLKYL--- 311

Query: 359 SNEQIKFLVSQGC-IKPL-CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT------ 410
            + + + L  +     P    ++                      E+ ++   T      
Sbjct: 312 -DCRPQDLPREVLTTNPRRLSII---------------------AESIRDGLATWDNWKH 349

Query: 411 GGVNLFAQAIDDA-EGLEKIENLQSHDNTEIYEKAVKI----LETYWVEEDEDEP 460
              +     I+ +   LE  E  +  D   ++  +  I    L   W +  + + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 91/576 (15%), Positives = 170/576 (29%), Gaps = 181/576 (31%)

Query: 1   MLWCW-------IDCFVCFSLLKPMDPMFFIIQLQLESL-PAMVAGVWSDDRNIQLDATT 52
           + W         +  FV   +L+  +  F +  ++ E   P+M+  ++ + R+   +   
Sbjct: 67  LFWTLLSKQEEMVQKFVE-EVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 53  QFRKLLSIERSPPIN------------------------------EVIQSGVVPRFIEF- 81
            F K  ++ R  P                                +V  S  V   ++F 
Sbjct: 125 VFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 82  -----LSRDDFPQLQFEAAWALTNIASG-------TSENTRVVIDHGAVPIFVRLLSSPT 129
                L   + P+   E    L              S N ++ I H       RLL S  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKP 242

Query: 130 --------DDVREQAVWALGNVAGDSPKCRDLVLSNGA---------------LMPLLAQ 166
                    +V+    W   N+      C+ L+ +                  L      
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 167 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALS 225
                  S+L             +PQ L  +     P    +I  S  D + T   W   
Sbjct: 298 LTPDEVKSLLLKYLDC-------RPQDLPREVLTTNPRRLSIIAESIRDGLAT---W--D 345

Query: 226 YLSDGTNDKIQAVIEAGV---CPRLVELLRH--------PSPSVLIPA--LRTV-GNIVT 271
                  DK+  +IE+ +    P      R         P PS  IP   L  +  +++ 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIK 401

Query: 272 GDDMQTQCIINHQALPCLLD-----------LLTQNYKKSIKKEA--------------C 306
            D M    ++N      L++            +    K  ++ E                
Sbjct: 402 SDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 307 WTISNITAGNVNQ---------IQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATS 356
           +   ++    ++Q         ++ I     +     + L+  F E K        NA+ 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 357 GGSN--EQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEGLENILKAGEAEKNMGNTGGV 413
              N  +Q+KF         +CD  N P   R+V      + + L   + E+N+  +   
Sbjct: 519 SILNTLQQLKFYKPY-----ICD--NDPKYERLV----NAILDFLP--KIEENLICSKYT 565

Query: 414 NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
           +L   A+               ++  I+E+A K ++
Sbjct: 566 DLLRIAL-------------MAEDEAIFEEAHKQVQ 588

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 63.5 bits (154), Expect = 7e-11
 Identities = 58/339 (17%), Positives = 117/339 (34%), Gaps = 24/339 (7%)

Query: 64  PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123
           P ++  +++ +   F   L  DD P ++  AA  L   A     +    +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183
           L S   D VR  AV A  N+A    +          +MP L Q  E     +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 184 SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 242
           +   +     + +     +PA + L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302
           + P + EL+   +  V       +  +          +     +  LL L     K    
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFLAQLKDECP 377

Query: 303 KEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361
           +     ISN+     V  I+ + ++ ++  +V L  +A++ ++      +         E
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQS-LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436

Query: 362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400
                ++  C+  L D        I       L+ +++ 
Sbjct: 437 FFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 42/287 (14%), Positives = 84/287 (29%), Gaps = 22/287 (7%)

Query: 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 177
           + + +  L +    +R  ++  L  +A        +  +   L+P L          +L 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIA----LALGVERTRSELLPFLTDTIYDED-EVLL 66

Query: 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237
                L  F      P +      LP LE L    +  V   A  +L  +S   +     
Sbjct: 67  ALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-- 122

Query: 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 297
            +EA   P +  L      +    A               +  +         +L   + 
Sbjct: 123 -LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLC-SDD 176

Query: 298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357
              +++ A   +              +++ II    NL  + +  ++  A  A  N    
Sbjct: 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233

Query: 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404
              E ++ LV    +  L         R+  +  +    + KA   E
Sbjct: 234 LPQEDLEALV----MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 16/200 (8%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LPA+V         ++L        L         +E +        + +L  D    ++
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL----NSLCMAWLV-DHVYAIR 458

Query: 92  FEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
             A   L  +      E     I    +P  + +   P    R   ++ +  ++    + 
Sbjct: 459 EAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514

Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
                    ++P + +       ++  N   +L            +      P LE+L  
Sbjct: 515 ITTKH----MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--VKPILEKLTQ 568

Query: 211 SNDDEVLTDACWALSYLSDG 230
             D +V   A  AL+ LS  
Sbjct: 569 DQDVDVKYFAQEALTVLSLA 588

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 14/324 (4%)

Query: 29  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERS-PPINEVIQSGVVPRFIEFLSRDDF 87
           +++L   +       R+I           L    S   +   +   +  R    +++ + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
             +Q EA   + ++ S       V      +   +  L+SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
             C ++V  +  +  LL++ +++  +S  R     ++   R     + E     +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
             + +DDE+      A          ++   +   +    ++ L +       P      
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTYD------PNYNYDD 315

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
                + M      +             +    +++ A   +  +     +++       
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV-VSTRHEMLPEFYKT 374

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAI 351
           +   L++     E  +K +   A 
Sbjct: 375 VSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 48.2 bits (113), Expect = 5e-06
 Identities = 34/247 (13%), Positives = 80/247 (32%), Gaps = 25/247 (10%)

Query: 67   NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126
             +   + V     +  +      ++  A  +L  +      + ++ +      + +   S
Sbjct: 811  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFS 866

Query: 127  SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185
            SP+++V+  A +ALG+++ G+ P+    VL      P       H+   ++ +A+     
Sbjct: 867  SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS----- 921

Query: 186  FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245
                    L          L +     ++         L         K+  +    + P
Sbjct: 922  -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLP 968

Query: 246  RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305
            RL   L   S       +  V   ++ D  Q    +    +   L  L      ++++ A
Sbjct: 969  RLKGYLISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVA 1026

Query: 306  CWTISNI 312
              T ++ 
Sbjct: 1027 LVTFNSA 1033

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 53/219 (24%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG---------------- 73
           E +   +  +  D   ++  A     K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 74  ---VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 130
               V   I+ L +D+   ++  AA AL  I            D  AV   ++ L     
Sbjct: 74  DERAVEPLIKAL-KDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 131 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190
            VR  A +ALG             + +   +  L +  +     + ++A   L       
Sbjct: 122 FVRIAAAFALGE------------IGDERAVEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229
                        A+E+L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 68/263 (25%)

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
           +      +                 +   +    +     + R A + L           
Sbjct: 2   RGSHHHHHHTDPE-----------KVEMYIKNL-QDDSYYVRRAAAYALGKI-------- 41

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254
                 A+  L + +   D  V   A  AL  + D      +  +E      L++ L+  
Sbjct: 42  --GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88

Query: 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDED-WFVRIAAAFALGEIGD 136

Query: 315 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 374
                         + PL+  L + +  +++ AA A+              +  +     
Sbjct: 137 -----------ERAVEPLIKALKDEDGWVRQSAADALGE------------IGGERVRAA 173

Query: 375 LCDLLNCPDPRIVTVCLEGLENI 397
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 59/424 (13%), Positives = 139/424 (32%), Gaps = 50/424 (11%)

Query: 6   IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 65
                  S L P            + L  +      +++++Q       ++LL +  S  
Sbjct: 230 SIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFT-----KELLRLLSSAC 284

Query: 66  INEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124
           I+E +++ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 125 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR-NATWTL 183
           +S       E +V AL  ++      + ++ SN +   +L    +  K++         +
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401

Query: 184 SNFCRGKPQPLFEQTRPALPALERLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAV 238
           +N      +                           E             D      + +
Sbjct: 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYI 453

Query: 239 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN 296
           +   +   L   + + SP+     +R + NI    +   Q +    A+  +L+ L   Q+
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQD 512

Query: 297 YKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK------- 345
             + I+   C  ++ +      G + +  + + A  I  L  LL  +             
Sbjct: 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA--IPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 346 -------EAAWAISNATSGGSNEQIK----FLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
                  EA  A++N  S  +++  +     + ++     + +L+   +  +    LE +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 395 ENIL 398
            N++
Sbjct: 631 SNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 53.6 bits (128), Expect = 9e-08
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 77/360 (21%)

Query: 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 164
              N + ++    +    R + + + + ++Q V  + N+          +   GA+  +L
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 165 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 224
                      L N                         AL R++   +  ++       
Sbjct: 505 ---------EYLANKQDIGE-----------PIRILGCRALTRMLIFTNPGLIF------ 538

Query: 225 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 284
                     + A+      P L ELL   +P    P           +D Q +   N++
Sbjct: 539 -----KKYSALNAI------PFLFELLPRSTPVDDNPLH---------NDEQIKLTDNYE 578

Query: 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344
           AL  L +L +     S  +E C  I             +        + NL+L+    ++
Sbjct: 579 ALLALTNLASSE--TSDGEEVCKHI-------------VSTKVYWSTIENLMLDENVPLQ 623

Query: 345 KEAAWAISNATSGGSNEQIKFL-----VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399
           +     ISN  S       KF       S      L  LL   D            NI  
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683

Query: 400 AGE--AEKNMGNTGGVN----LFAQAIDDAE----GLEKIENLQSHDNTEIYEKAVKILE 449
                A++ +     +     +FA  IDD E     L     L          +   +L+
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ 743

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 49/343 (14%), Positives = 94/343 (27%), Gaps = 31/343 (9%)

Query: 66  INEVIQSGVVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
           +  V +  ++P  +  L          ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 123 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 182
           + LS     VR    W L   A               +  LL +  +  K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 183 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 242
            +         L       L  L         + L     A+  L         +V    
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL-------ADSVGHHL 518

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302
             P  ++        +L+P L    N++  +D           L C L  +    +    
Sbjct: 519 NKPEYIQ--------MLMPPLIQKWNMLKDEDKD-----LFPLLEC-LSSVATALQSGFL 564

Query: 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 362
                         VN +Q  +   ++         A  +     A  + +  + G    
Sbjct: 565 PYCEPVYQRC----VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620

Query: 363 IKFLVSQGCIKP-LCDLLNCPDPRIVTVCLEGLENILKAGEAE 404
           I+ LV++  I   +   +    P +       L ++ KA    
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 663

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 57/464 (12%), Positives = 130/464 (28%), Gaps = 62/464 (13%)

Query: 6   IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 65
            +      +L  +     +  +    +  M+      D N+ L+A   +  L        
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291

Query: 66  INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 125
           +       ++P  +  +   D   +               + +                 
Sbjct: 292 VLVRHLPKLIPVLVNGMKYSDI-DIILLKGDVEGGSGGDDTISD---------------- 334

Query: 126 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185
                ++R+ +  AL  +A      RD +L    ++PLL +   H +  +  +    L  
Sbjct: 335 ----WNLRKCSAAALDVLAN---VYRDELLP--HILPLLKELLFHHEWVVKESGILVLGA 385

Query: 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245
              G  Q +       +P L + +      V +  CW LS  +     +        +  
Sbjct: 386 IAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445

Query: 246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKK 303
            L++ +   +  V   A      +    +     ++ +    L  L+      Y+     
Sbjct: 446 ELLKRILDSNKRVQEAACSAFATLE---EEACTELVPYLAYILDTLVFAF-SKYQHKNLL 501

Query: 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
                I  +     + +       ++ P +    N   +  K+    +   +S  +  Q 
Sbjct: 502 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS 561

Query: 364 KFL-----VSQGCIKPLCDLLN-------------CPDPRIVTVCLEGLENILKAGEAEK 405
            FL     V Q C+  +   L               PD   + V L+ L  + +      
Sbjct: 562 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN- 620

Query: 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
                       Q +  +  L  +         E+ + +  +L 
Sbjct: 621 ----------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
               I  +   D   L++  A+ +    +GT  N+ V        +    +S   DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            AV ALG V                +  ++   ++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
                 A+  L+ L     D V   A  ALS +     +K        + P++ ++ ++
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK--------LNPQVADINKN 692

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 50/349 (14%), Positives = 103/349 (29%), Gaps = 42/349 (12%)

Query: 54  FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113
              L+ + ++   +  I    +      +S D+  +++  +     ++ S   + T + I
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGS---QFTEIFI 118

Query: 114 -DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHA 171
                V + + LL      VR   V  L ++      + + ++L +   +  L      +
Sbjct: 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178

Query: 172 KLSMLRNATWTLSNFCRGKP--QPL--FEQTRPALPALERLIH----SNDDEVLTDACWA 223
           +  +  +    L    R     Q +  FE    A   L  +I     S+   V+ D    
Sbjct: 179 REVIRNDGVLLLQALTRSNGAIQKIVAFEN---AFERLLDIITEEGNSDGGIVVEDCLIL 235

Query: 224 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV---------------LIPALRTVGN 268
           L  L    N       E     R+         +                L+  L +  N
Sbjct: 236 LQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295

Query: 269 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGN-VNQIQ-AIIE 325
                    + +     L  L  + +       I  E   T+S +  G  VNQ   A + 
Sbjct: 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355

Query: 326 AGIIGPLVNLLLN--------AEFEIKKEAAWAISNATSGGSNEQIKFL 366
           A    P   +++           F ++    +            Q + +
Sbjct: 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +      +  D+   ++ + + AL+ +               A    +  LS+    +R 
Sbjct: 14  LVPRGSHM-ADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A W +GN              +   +  L +  E     +   A  +L           
Sbjct: 61  AAAWIIGN------------FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI-------- 100

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWAL 224
                    A+E+L  +        A   L
Sbjct: 101 --GGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 34/142 (23%)

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 176
            +      ++     VR     AL              + + A  PLL     +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 236
             A W + NF          Q   A+  L +L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 237 AVIEAGVCPRLVELLRHPSPSV 258
            V  A     + +L    +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 70  IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT 129
           +        +E L  ++  +++  AAW + N             D  AV   ++LL   +
Sbjct: 39  MGDEAFEPLLESL-SNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 130 DDVREQAVWALGNVAGDS 147
             VR  A  +L  + G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
            V   I+ L  DD   ++  AA +L  I                     +L  + T   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 134 EQAVWALG 141
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
              L      +   +  V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318
              A   +GN    D+         +A+  L+ LL ++    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GG-- 102

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351
                    +   +  L        +K A   +
Sbjct: 103 -------ERVRAAMEKLAETGTGFARKVAVNYL 128

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 55/350 (15%), Positives = 122/350 (34%), Gaps = 45/350 (12%)

Query: 66  INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
             +   + ++   +EF+      D  + +  A  A  +I  G  +  R    H A+P  +
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417

Query: 123 RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181
            L++  +  V+E   W +G +A   +          G +   L    +H K++   N +W
Sbjct: 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSW 475

Query: 182 TLSNFCRGKPQPLFEQTRPALPA-LERLIHS-----NDDEVLTDACWALSYLSDGTNDKI 235
           T+ N      +          PA ++ LI +     N+      A  AL+ + +   D +
Sbjct: 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535

Query: 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295
                + +   +++         L   +    N +T +D Q+   +    L  L      
Sbjct: 536 AETSAS-ISTFVMD--------KLGQTMSVDENQLTLEDAQSLQELQSNILTVL------ 580

Query: 296 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW-AISNA 354
                         + +   + + ++ + +  ++G    LL   +    ++  + AIS  
Sbjct: 581 --------------AAVIRKSPSSVEPVADM-LMGLFFRLLEKKDSAFIEDDVFYAISAL 625

Query: 355 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404
            +       K+L  +     L   LN  D  +    +  + +I  + E +
Sbjct: 626 AASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 24/343 (6%)

Query: 79  IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA---VPIFVRLLSSPTD-DVRE 134
           ++    +    ++  +  AL  +       ++ ++       + I     S+ T   VR 
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A+ AL +         +       LM ++ +  +   + +   A   L          +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259

Query: 195 FEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
                 AL AL    + S +D+V +      S + +   D    + +    P        
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319

Query: 254 PSPSVLIPALR---TVGNIVTGDDMQTQCIINHQAL------------PCLLDLLTQNYK 298
            S   ++P L    T  N    DD     +     L              +L+ + QN  
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379

Query: 299 KS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355
                 ++ A     +I  G     +       +  ++NL+ +   ++K+  AW I    
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIA 439

Query: 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398
              +          G ++     L    P++ T C   + N++
Sbjct: 440 DSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLV 481

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 25/229 (10%)

Query: 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 252
            L  + + AL  +  L   +D+     A  AL  +    +  ++ ++        +  L 
Sbjct: 26  SLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85

Query: 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL---------------LDLLTQNY 297
             +  V I ALR +G +V    M ++  +  +A   L               +D+L++  
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357
                K     I+ +        +    AG    L  L  +A+          I +    
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKV---AGFCLFLNMLNSSADSGHLTLILDEIPSLLQN 200

Query: 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 406
            +       + +  +  L   L+ P    V + L  +  I+      + 
Sbjct: 201 DN-----EFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG 244

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 14/250 (5%)

Query: 66  INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
           +    +  +VP  + F+    ++   + +  A  A   I  G   +    +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 123 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKLSMLRNAT 180
            L+  P+  VR+ A W +G +        +  +++  L PLL    E   A+  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 240
           W  S+      +   +            + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYEA-ADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 241 A-----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295
           +         +        +  V++  L+ V  + +     +  I  +     L   L  
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQN 590

Query: 296 NYKKSIKKEA 305
             +K   ++A
Sbjct: 591 VLRKVQHQDA 600

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.8
3grl_A	651	General vesicular transport factor P115; vesicle t	99.79
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.76
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.69
3grl_A	651	General vesicular transport factor P115; vesicle t	99.69
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.63
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.61
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.6
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.59
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.57
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.56
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.46
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.43
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.36
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.12
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.11
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.05
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.01
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.93
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.9
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.89
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.86
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.86
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.77
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.73
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.71
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.59
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.53
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.52
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.52
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.52
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.46
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.32
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.31
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.27
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.2
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.19
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.19
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.17
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.08
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.02
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.01
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.89
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.75
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.63
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.5
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.5
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.46
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.43
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.41
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.38
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.33
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.32
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.32
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.12
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.96
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.95
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.69
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.57
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.56
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.53
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.42
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.33
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.21
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.98
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.73
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.54
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.44
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.34
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.22
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.19
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.15
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.99
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.67
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	94.51
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.39
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.95
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.62
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	93.12
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	92.38
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.02
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	90.75
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.55
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	88.37
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	88.28
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	88.1
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	87.8
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	87.28
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	87.02
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	86.98
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	85.63
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	84.13
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	83.26
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	82.53
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	81.49
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.42

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.7e-58  Score=460.77  Aligned_cols=446  Identities=48%  Similarity=0.827  Sum_probs=388.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+++.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|++++++.+|..|+|+|+|++.++++.+.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48999999999999999999999999999988889999999999999999998776689999999999999998999999


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHHh
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNF  186 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~v~~~a~~~L~~l  186 (488)
                      .+++.|+++.|+.+|+++++++++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|++.++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995322    345788999999999


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316          187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +.+. +........+++|.|+.++.++++.++..++++|.+++....+..+.+.+.|+++.|+.+|.++++.++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 555666678999999999999999999999999999999888888888899999999999999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      |++++.+++.....+++.|+++.|+.+|+++ +..+++.|+|+|+|++.++++.++.+.+.|+++.|+.++.+++.+++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999998889999999999999999999 899999999999999999899999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011316          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  425 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~  425 (488)
                      +|+|+|.|++..++.++..++.+.|+++.|+++|+.+|++++..++++|.+++..+++..      ..+.+...+++.||
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~gg  450 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGG  450 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCc
Confidence            999999999998889999999999999999999999999999999999999998876532      34568899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316          426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF  487 (488)
Q Consensus       426 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (488)
                      +++|+.|++++|++|+++|..+|++||++|+|+|+  .|++  ++.+|.|+.+.  .|||+|||
T Consensus       451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~  510 (510)
T 3ul1_B          451 LDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPET--TSEGFAFQVQD--GAPGTFNF  510 (510)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCC--CccccccCCCC--CCCCCCCC
Confidence            99999999999999999999999999998777666  4544  45679998653  38899998

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.9e-57  Score=454.64  Aligned_cols=447  Identities=47%  Similarity=0.815  Sum_probs=388.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++.+.|+|++.++.|+..++++++.++++..+.+++.|++|.|+++|...+++.++..|+|+|++++.++++.+
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            46899999999999999999999999999988788899999999999999999877668999999999999999899999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHH
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN  185 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~v~~~a~~~L~~  185 (488)
                      ..+++.|+++.|+.++.++++++++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|++++
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995322    34578899999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011316          186 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  264 (488)
                      ++.+. +........+++|.|+.++.++++.++..++++|.+++....+..+.+.+.|+++.|+.+|.++++.++..++.
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            99987 55566677899999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      +|++++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99999999998889999999999999999999 99999999999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc
Q 011316          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE  424 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g  424 (488)
                      ..|+|+|+|++..+++++..++.+.|+++.|+++|+.+|++++..++++|.+++..++...      ..+.+...+++.|
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~g  468 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECG  468 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCC
Confidence            9999999999998889999999999999999999999999999999999999998776432      3455888999999


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316          425 GLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF  487 (488)
Q Consensus       425 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (488)
                      |+++|+.|++|+|++|+++|..+|++||++|+|+|+  +|++  ++.+|.|+++.  .+||||||
T Consensus       469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~f~f  529 (529)
T 3tpo_A          469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPET--TSEGFAFQVQD--GAPGTFNF  529 (529)
T ss_dssp             CHHHHTGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCC--CCcccccCCCC--CCCCCCCC
Confidence            999999999999999999999999999998766665  4544  45569998653  37899998

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=5.3e-49  Score=396.21  Aligned_cols=443  Identities=84%  Similarity=1.294  Sum_probs=391.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+|.+++.|.++++.++..|++.|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++.+
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            56999999999999999999999999998877557788999999999999999987658999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|+++.|+.+|.++++.+++.|+++|++++.+.+..+..+.+.|+++.|+.++..+.++.++..++|+|.+++..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998888999999999999999997778899999999999999998


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .+........++++.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+++
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            76777777899999999999999999999999999999988887778889999999999999999999999999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011316          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~  349 (488)
                      +.+++.....+++.++++.|+.+|.++.++.++..|+|+|+|++.++++....+++.|+++.|+.++.++++.++..|++
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  393 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW  393 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            99888888889999999999999987657899999999999999988888999999999999999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011316          350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  429 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  429 (488)
                      +|++++..++++...++.+.|+++.|+.++..++++++..++++|.+++...+....... ...+.+...+.+.|+++.+
T Consensus       394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l  472 (528)
T 4b8j_A          394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKI  472 (528)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHH
Confidence            999999987789999999999999999999999999999999999999988765332111 1345689999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 011316          430 ENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGF  473 (488)
Q Consensus       430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  473 (488)
                      ..++++++++++++|..++++||+.++++|..+..+..+.+|.|
T Consensus       473 ~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~~~~~~~~  516 (528)
T 4b8j_A          473 ENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATF  516 (528)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCcccccccccCCCcccccee
Confidence            99999999999999999999999988776665555555554444

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.2e-46  Score=374.97  Aligned_cols=426  Identities=58%  Similarity=0.894  Sum_probs=387.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.+++.|+++++.++..|++.|.++++..+.+....+++.|++|.|+++|.+++++.++..|+++|++++..+++.+
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            67999999999999999999999999998876456678889999999999999997338999999999999999888899


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|+++.|+.+|.++++.+++.|+++|++++.+.+..+..+...|+++.++.++ .+.++.++..++|+|.+++.+
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999888899999999999999999 568899999999999999988


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      . +........++++.|+.++.++++.++..++++|.+++...+...+.+++.|+++.|+.++.++++.++..|+++|++
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            7 666677778999999999999999999999999999998877777888888999999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      ++.+++...+.+++.++++.++.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  404 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  404 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888999999999999999 899999999999999998888888899999999999999999999999999


Q ss_pred             HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011316          349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL  426 (488)
Q Consensus       349 ~aL~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  426 (488)
                      ++|++++..+++  +....+.+.|+++.|+.++.+++++++..++++|.+++...+..... .....+.+...+.+.|++
T Consensus       405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~  483 (530)
T 1wa5_B          405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGM  483 (530)
T ss_dssp             HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcH
Confidence            999999987666  77888999999999999999999999999999999999877653210 001235588999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011316          427 EKIENLQSHDNTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       427 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      +.|..++++++++++++|..++++||+.++++
T Consensus       484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999999987764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.5e-44  Score=357.02  Aligned_cols=426  Identities=61%  Similarity=0.959  Sum_probs=380.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHc-CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ++.+++.|+++++.++..|+..|.++++....+..+.+++. |+++.|+++|++++++.++..|+++|.+++..+++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78899999999999999999999998875435556777777 99999999999983399999999999999998888888


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      .+++.|+++.|+.+++++++.+++.|+++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++++|.+++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88899999999999999999999999999999999988888889999999999999954578999999999999999876


Q ss_pred             -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          191 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       191 -~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                       +........++++.++.+++++++.++..++++|.+++...++....+.+.++++.|+.++.++++.++..++++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555555689999999999999999999999999999988777777788889999999999999999999999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011316          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~  349 (488)
                      +.+.+...+.+++.++++.++.+++++ ++.+|..|+++|+|++.++++..+.+++.|+++.|+.++.+++++++..|++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            998887777888889999999999998 8999999999999999988888888999999999999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011316          350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  429 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  429 (488)
                      +|++++..++++....+.+.|+++.|++++++++++++..++++|.+++...+..... +....+++...+.+.|+++.|
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~l  419 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYGLDKI  419 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHHHHHHHHcCcHHHH
Confidence            9999998767788888889999999999999999999999999999999876643221 011235689999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316          430 ENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                      ..++++++.+++++|..++++||+.|+++|
T Consensus       420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          420 EFLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            999999999999999999999998776644

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.1e-40  Score=328.19  Aligned_cols=377  Identities=26%  Similarity=0.407  Sum_probs=334.4

Q ss_pred             CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011316           16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA   94 (488)
Q Consensus        16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a   94 (488)
                      .|++.+++.     |++|.|+++|++ +++.+|..|+|+|.+++++. .+..+.+++.|++|.|+++|++++ +++++.|
T Consensus        91 ppi~~ii~~-----G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A  163 (510)
T 3ul1_B           91 PPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQA  163 (510)
T ss_dssp             CCHHHHHHT-----THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred             chHHHHHHC-----CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHH
Confidence            456777777     999999999975 66899999999999999875 678889999999999999999999 9999999


Q ss_pred             HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316           95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE  169 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  169 (488)
                      +++|++++.++++.|..+.+.|+++.|+.++.+++     ..+.+.+++++.+++.+...........++++.|++++ .
T Consensus       164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~  242 (510)
T 3ul1_B          164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-H  242 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-h
Confidence            99999999988999999999999999999998743     45788999999999987655555555567889999999 7


Q ss_pred             cccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316          170 HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      +.+++++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|+
T Consensus       243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~  322 (510)
T 3ul1_B          243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP  322 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred             cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence            88999999999999999987632 23345578999999999999999999999999999999888888899999999999


Q ss_pred             HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 011316          249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG  327 (488)
Q Consensus       249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~  327 (488)
                      .+|.++++.++..|+++|+|++.+++.....+.+.|+++.++.++.++ +..+|+.|+|+|+|++. ++.+.+..+++.|
T Consensus       323 ~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g  401 (510)
T 3ul1_B          323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCG  401 (510)
T ss_dssp             -CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999 99999999999999998 5788889999999


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +++.|+++|..++++++..++++|.|+...     ........+.+.|+++.|..+..+++.++.+.|..+|.+.+..+
T Consensus       402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999999999752     22344556678899999999999999999999999998887543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2e-39  Score=325.16  Aligned_cols=377  Identities=26%  Similarity=0.405  Sum_probs=333.5

Q ss_pred             CCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011316           16 KPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA   94 (488)
Q Consensus        16 ~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a   94 (488)
                      .|++.++..     |.+|.|+++|. ++++.++..|+++|.+++++. .+....+++.|++|.|+.+|.+++ ++++..|
T Consensus       110 ~~i~~ii~~-----G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A  182 (529)
T 3tpo_A          110 PPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQA  182 (529)
T ss_dssp             CCHHHHHHT-----THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred             chHHHHHHC-----CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHH
Confidence            345566666     99999999997 466999999999999998875 677788999999999999999999 9999999


Q ss_pred             HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316           95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE  169 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  169 (488)
                      +++|++++.++++.+..+.+.|+++.|+.++..++     ..+.+.++|++.+++.+...........++++.|+.++ .
T Consensus       183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~  261 (529)
T 3tpo_A          183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-H  261 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-c
Confidence            99999999988999999999999999999998643     45788999999999987655555555567889999999 7


Q ss_pred             cccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316          170 HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      +.++.++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|+
T Consensus       262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~  341 (529)
T 3tpo_A          262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP  341 (529)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH
Confidence            88999999999999999987632 33345579999999999999999999999999999998888888899999999999


Q ss_pred             HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 011316          249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG  327 (488)
Q Consensus       249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~  327 (488)
                      .+|.++++.++..|+++|++++.+++.....+++.|+++.++.++.++ +..++..|+|+|+|++. ++++.+..+++.|
T Consensus       342 ~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g  420 (529)
T 3tpo_A          342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCG  420 (529)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence            999999999999999999999999998999999999999999999999 99999999999999998 5788889999999


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +++.|+++|..+|++++..++++|.|+...     ........+.+.|+++.|..+..+++.++.+.|..+|.+.+..+
T Consensus       421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999999999742     22344556778899999999999999999999999998887543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.5e-36  Score=304.37  Aligned_cols=401  Identities=18%  Similarity=0.221  Sum_probs=342.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .|++|.|++.|+++++.++..|+++|.+++... ......+.+.|++|.|+++|.+++ ++++..++.+|.+++..+++.
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~  177 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  177 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            389999999999999999999999999998865 455777778999999999999988 899999999999999988999


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|+.++++ .+...+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.++..++|+|.+++
T Consensus       178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~  255 (529)
T 1jdh_A          178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHh
Confidence            9999999999999999987 4566777889999999975 45688888999999999999 6668999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHH
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~  265 (488)
                      ...+..  ....++++.++++++++++.++..++++|++++..+++....+.+.|+++.|+.++.+  .++.++..++++
T Consensus       256 ~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~  333 (529)
T 1jdh_A          256 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence            876332  2346899999999999999999999999999998877777889999999999999975  347899999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011316          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  342 (488)
                      |++++..++.   .+..+.+.++++.++.+|+++.++.++..++|+++|++.+ ++....+.+.|+++.|+.++.+++++
T Consensus       334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~  412 (529)
T 1jdh_A          334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence            9999986543   3557778899999999999883469999999999999986 44457888999999999999988888


Q ss_pred             HHHHHHHHHHH----------------------hccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          343 IKKEAAWAISN----------------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       343 v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +|..|+|++.|                      ++.  .++.+..+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus       413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~  490 (529)
T 1jdh_A          413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence            88877766665                      443  345667788999999999999999999999999999998643


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      .+             ++..+.+.|+++.|..++++++++|++.|.+++.++
T Consensus       491 ~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            22             578899999999999999999999999999999876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-37  Score=315.01  Aligned_cols=367  Identities=15%  Similarity=0.141  Sum_probs=316.7

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316           30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      +.++.++++|.++  +++++..|++.|..+...  .+....++ +.|++|.|+++|++++ +.++..|+++|+|++.+++
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence            4467788888887  899999999999997543  34455555 5799999999999988 8999999999999998542


Q ss_pred             h-----------------------------hh---HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316          107 E-----------------------------NT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus       107 ~-----------------------------~~---~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      +                             .+   +.+++.|+++.|+.+++++++.+++.|+|+|+|++.+ +.++..+
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            1                             12   6788999999999999999999999999999999975 5589999


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccC
Q 011316          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDG  230 (488)
Q Consensus       155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~  230 (488)
                      .+.|++++|+.++ .+.++..++.|+|+|.+++.+......   ....+++|.|+.+|.++ +...+..++++|.|++..
T Consensus       533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999 677788999999999999876421111   12356899999999865 334467899999999998


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      +++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+.+ ....+.+ .+.++.|+.+++++ +..+|..|+|+|
T Consensus       612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL  689 (810)
T 3now_A          612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGAL  689 (810)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence            87777889999999999999999999999999999999999655 4445554 78999999999998 999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC---CHH
Q 011316          310 SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPR  385 (488)
Q Consensus       310 ~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~---~~~  385 (488)
                      +|++.+++..++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.. +.+....+.+.|+++.|.++++.+   +.+
T Consensus       690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~  768 (810)
T 3now_A          690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK  768 (810)
T ss_dssp             HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred             HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence            9999977888999998 89999999999999999999999999999984 578899999999999999999765   689


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 011316          386 IVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~  404 (488)
                      +++.++++|.+++..+.-.
T Consensus       769 i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          769 AREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhCCCcc
Confidence            9999999999999887643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.8e-37  Score=300.79  Aligned_cols=365  Identities=18%  Similarity=0.209  Sum_probs=308.7

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      .+|.|+++|++++ ++++..|+++|.+++..++..+..+.+.|+++.|+++|+++++.++..|+++|.||+.++++.+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 899999999999999877888889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--------c--------CChhHH
Q 011316          154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL  217 (488)
Q Consensus       154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~--------~--------~~~~v~  217 (488)
                      +.+.|+++.|+++|..+.++++++.++|+|.+++........... |++|.|+.++.        +        .+..+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998544443445 99999999993        2        245677


Q ss_pred             HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC------------------
Q 011316          218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG------------------  272 (488)
Q Consensus       218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~------------------  272 (488)
                      ..++++|.|++.. ++..+.+.+. |+++.|+.++.+      .+..+.+.++.+|.+++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999987 6677778887 999999999975      4567888899999988732                  


Q ss_pred             --------------------------------CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH--
Q 011316          273 --------------------------------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--  318 (488)
Q Consensus       273 --------------------------------~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  318 (488)
                                                      .+...+.+++.++++.++.+|.+..++.++..|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1123344566778899999998776789999999999999985432  


Q ss_pred             -HH-HHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC------HHHHHH
Q 011316          319 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PRIVTV  389 (488)
Q Consensus       319 -~~-~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~------~~v~~~  389 (488)
                       .. +..+ +.|++|.|++++.+++.+++..|+|+|.|++.+.  + ...++..++++.|+++|..++      +++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3444 6899999999999999999999999999998743  3 344556689999999999764      368889


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 011316          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~  456 (488)
                      ++++|.+++..+..            +...+.+.|+++.|.+++.++ ++++++.|.++|++||..++
T Consensus       397 ~l~~l~ni~~~~~~------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999865442            477788999999999999999 99999999999999997654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.8e-37  Score=294.17  Aligned_cols=371  Identities=18%  Similarity=0.185  Sum_probs=295.7

Q ss_pred             HHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-----------hhHHHH
Q 011316           25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-----------PQLQFE   93 (488)
Q Consensus        25 ~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----------~~v~~~   93 (488)
                      +..+++.++.++..+.+.++..   ..+.|..+.. + .+.+..+++.|++|.|+++|+..+.           ++++..
T Consensus        27 ~~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~  101 (458)
T 3nmz_A           27 LGTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSS-S-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR  101 (458)
T ss_dssp             ------------------CCHH---HHHHHHHHHS-S-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred             cCchHHHHHHHHHHhcCCCHHH---HHHHHHHHHc-C-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence            3556678899999999887762   5566666443 2 4556888999999999999997542           699999


Q ss_pred             HHHHHHHhcCCCchhhHHHHhCCCH----------HHHHHhhCCCC--HH-----HHH-------HHHHHHhhhhCCCch
Q 011316           94 AAWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPK  149 (488)
Q Consensus        94 a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----~~~-------~a~~~L~~l~~~~~~  149 (488)
                      |+|+|.||+.+.++......+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ ++
T Consensus       102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e  180 (458)
T 3nmz_A          102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE  180 (458)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence            9999999999888888888787877          66777776632  22     444       999999999766 77


Q ss_pred             hHHHHHhcCChHHHHHHhcc----------cccHhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhccCChhHH
Q 011316          150 CRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVL  217 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~  217 (488)
                      +|+.+.+.|++++|+.++..          +.++.+++.|+|+|.+++.+.+......  ..|++|.|+.+|++++++++
T Consensus       181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~  260 (458)
T 3nmz_A          181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ  260 (458)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence            89999999999999999942          2457799999999999998864222222  46779999999999999999


Q ss_pred             HHHHHHHHHhccC-CchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhc
Q 011316          218 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLT  294 (488)
Q Consensus       218 ~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~  294 (488)
                      ..++++|++++.. ++.....+.+.|+++.|+.+| .+.++.++..++.+|+||+.+++.....+. ..|+++.|+.+|.
T Consensus       261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~  340 (458)
T 3nmz_A          261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT  340 (458)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence            9999999999985 455667788999999999975 557789999999999999986655555565 7899999999998


Q ss_pred             ccchh---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316          295 QNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       295 ~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++.+.   .++..|+|+|.|++.   ++++.++.+.+.|+++.|+.+|.+++..++++|+++|.|++.. ++++...+.+
T Consensus       341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~  419 (458)
T 3nmz_A          341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD  419 (458)
T ss_dssp             CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence            77222   499999999999997   6789999999999999999999999999999999999999864 5788899999


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          369 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       369 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      .|+++.|+++++++++.+++.|+++|.+|+...+
T Consensus       420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999987643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=304.47  Aligned_cols=405  Identities=19%  Similarity=0.224  Sum_probs=347.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ++++..++.+|.+++..+++.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~  174 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  174 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence            489999999999999999999999999998875 566777888999999999999998 899999999999999878999


Q ss_pred             hHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|+.++++. ...++..++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..++..++++|.+++
T Consensus       175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~  252 (644)
T 2z6h_A          175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  252 (644)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999874 477889999999999965 45788899999999999999 6678999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~  265 (488)
                      ...+..  ....++++.|+.+++++++.++..++++|.+++..++...+.+.+.|+++.|+.++.+.  .+.++..|+++
T Consensus       253 ~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          253 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            876332  33468999999999999999999999999999998777778889999999999999763  37899999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011316          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--  340 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~--  340 (488)
                      |++++...+.   ....+.+.++++.|+++|+++.++.+++.|+|+|+|++.+.. ....+.+.|+++.|++++.+++  
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~  409 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD  409 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchh
Confidence            9999975442   234467889999999999987447999999999999998644 4478889999999999998754  


Q ss_pred             --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                                          .+++..++.+|.+++..  ...+..+.+.|+++.|++++.+++++++..++++|.++...
T Consensus       410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence                                34566677777777753  36667888999999999999999999999999999998753


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCC
Q 011316          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK--------------------AVKILETYWVEE  455 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~--------------------a~~~l~~~~~~~  455 (488)
                      .+             ++..+.+.|+++.|..++++++++++..                    +..++.+||..+
T Consensus       488 ~~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          488 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HH-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            22             5788999999999999999999999553                    455777777654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.8e-36  Score=306.44  Aligned_cols=407  Identities=16%  Similarity=0.145  Sum_probs=335.6

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-h
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-E  107 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~  107 (488)
                      -|.++.++.++.|+++.++..|++++.+++++  ...++.+++.|+ +.|+.++++++ +.+|..|+.+|++++.... +
T Consensus       289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d  364 (810)
T 3now_A          289 EGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQD  364 (810)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTT
T ss_pred             cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccC
Confidence            38999999999999999999999999996554  567787888775 99999999888 8999999999999985221 2


Q ss_pred             hhHHHHhCCC----HHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHH
Q 011316          108 NTRVVIDHGA----VPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  181 (488)
Q Consensus       108 ~~~~~~~~g~----i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~  181 (488)
                      .....++.|.    ++.++++|.++  ++++++.|+|+|++++.+.+.......+.|+++.|+.++ .+.++.++..+++
T Consensus       365 ~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~  443 (810)
T 3now_A          365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVT  443 (810)
T ss_dssp             TSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHH
T ss_pred             ccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHH
Confidence            2222333343    56778888887  899999999999999987665444455679999999999 6788999999999


Q ss_pred             HHHHhhcCCCCC---------------------------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          182 TLSNFCRGKPQP---------------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       182 ~L~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      +|.|++.+.+..                                 ......|++|.|+.+++++++.+++.++|+|+|++
T Consensus       444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA  523 (810)
T 3now_A          444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC  523 (810)
T ss_dssp             HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            999999864211                                 22334689999999999999999999999999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHH--HhhCCChHHHHHHhcccchhhHHHHHH
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--IINHQALPCLLDLLTQNYKKSIKKEAC  306 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~lL~~~~~~~v~~~a~  306 (488)
                      .. ++....+++.|+++.|+.+|.++++..+..|+++|++++.+.+.....  ....++++.|+.+|.++.+...+..|+
T Consensus       524 ~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl  602 (810)
T 3now_A          524 GL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL  602 (810)
T ss_dssp             TS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred             CC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence            65 457788999999999999999999999999999999998754322110  011358999999998652344567899


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCHH
Q 011316          307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~  385 (488)
                      ++|.|++..+++.++.+++.|+++.|+.++.++++.++..|+++|+|++.+  ++....+.+ .|.++.|+.++.+++..
T Consensus       603 ~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~  680 (810)
T 3now_A          603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEE  680 (810)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence            999999998888899999999999999999999999999999999999974  355566665 68999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ++..|+++|.++....+..           ....+...|+++.|..++.+++.+++..|.+++.++...
T Consensus       681 vq~~Aa~ALanLt~~s~~~-----------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          681 TATACAGALAIITSVSVKC-----------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHHCHHH-----------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCHHH-----------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            9999999999998743322           134444389999999999999999999999999998764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=6.5e-36  Score=300.71  Aligned_cols=369  Identities=25%  Similarity=0.357  Sum_probs=327.9

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.+|.|++.|.++ ++.++..|+++|.+++... .+....++..|+++.|+++|.+++ +.++..|+++|++++..+++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            8999999999987 8999999999999988754 456777888999999999999988 999999999999999978899


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+...|+++.|+.++.+.++.++..++++|++++.+...........++++.|+.++ .+.++.++..++++|.+++.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999977622234555678999999999 67789999999999999998


Q ss_pred             CCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          189 GKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..+. .......++++.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7522 223334689999999999999999999999999999888777788888999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NV--NQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      +++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.. .+  +....+++.|+++.|+.++.++++.++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998888888888999999999999988 899999999999999983 45  778888999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ..++++|.+++.....          .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999864422          245678889999999999999999999999999999886543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.8e-36  Score=301.75  Aligned_cols=368  Identities=25%  Similarity=0.360  Sum_probs=328.7

Q ss_pred             ccHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.+|.|++.|.+++ +.++..|+++|.+++... .+....+++.|+++.|+++|.+++ +.++..|+++|++++...+..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            99999999999876 999999999999998764 567788889999999999999988 999999999999999978889


Q ss_pred             hHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.++.++..++++|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5688999999999999999876543 3344578999999999 7789999999999999999


Q ss_pred             cCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHH
Q 011316          188 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~  265 (488)
                      ...+.. ......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            775322 3344568999999999999999999999999999998888888889999999999999998 89999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      |++++.+++.....+++.++++.|+.+|.++ +..++..|+++|+|++.. +++....+++.|+++.|+.++..+++.++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888888999999999999998 999999999999999984 78888999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ..++++|.+++.....          .....+.+.|+++.+..+.++++++++..+..++.+++..++
T Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~  499 (528)
T 4b8j_A          432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE  499 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            9999999999864422          356777889999999999999999999999999999876543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=8.2e-36  Score=294.34  Aligned_cols=367  Identities=25%  Similarity=0.343  Sum_probs=324.2

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.+|.+++.|+++ ++.++..|+++|.+++... .+....+++.|+++.|+++|++++ +.+|..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            7899999999988 8999999999999998764 456677788999999999999988 999999999999999988889


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      +..+.+.|+++.|+.++.+ .+..++..++++|++++.+. +....... .++++.++.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 33222222 67899999999 677899999999999999


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316          187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +... +........++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            9865 222333446899999999999999999999999999999887777778888999999999999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      |++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999998 899999999999999984 67888888899999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.+++++++..+..+|.+++..+
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999875422          23466778899999999999999999999999999998543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.9e-36  Score=294.93  Aligned_cols=364  Identities=16%  Similarity=0.191  Sum_probs=303.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+|.+++.|+++++.++..|+++|.+++... ......+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5889999999999999999999999987543 445668889999999999999988 99999999999999997799999


Q ss_pred             HHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------ccHh
Q 011316          111 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS  174 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~  174 (488)
                      .+++.|+++.|+++|. ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++..        .       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78999999999999999988 567888888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcc------CChhHHHHHHHHHHHhccCC----------------
Q 011316          175 MLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHS------NDDEVLTDACWALSYLSDGT----------------  231 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~~----------------  231 (488)
                      +++.|+|+|.+++...+....+... |+++.|+.++++      .+..+++.++.+|.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999873323333334 999999999986      46678889999999886310                


Q ss_pred             ----------------------------------chhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchh
Q 011316          232 ----------------------------------NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       232 ----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                                                        +...+.+++.++++.++.+|.+ .++.+++.|+++|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              1122334455678888888865 46889999999999999876542


Q ss_pred             h----HHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh------hHHH
Q 011316          277 T----QCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF------EIKK  345 (488)
Q Consensus       277 ~----~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~v~~  345 (488)
                      .    +..+ +.++++.|+++|.++ +.++++.|+|+|+|++.+ ++ .+.++..++++.|+++|..+++      ++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2    3333 689999999999999 999999999999999885 33 3455566899999999998743      6888


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011316          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~  402 (488)
                      .++++|.++.... ++....+.+.|+++.|.+++.++ +++++..|.++|.+++...+
T Consensus       396 ~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9999999998754 57788888999999999999999 99999999999999885543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=8.1e-34  Score=295.91  Aligned_cols=400  Identities=20%  Similarity=0.223  Sum_probs=342.2

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|.+++ .+++..++.+|.+++..+++.
T Consensus       233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~  310 (780)
T 2z6g_A          233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  310 (780)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence            389999999999999999999999999998765 466677778999999999999988 899999999999999878999


Q ss_pred             hHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++++|.+++
T Consensus       311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~  388 (780)
T 2z6g_A          311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  388 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence            999999999999999998754 566778899999999754 4678888999999999999 6678899999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHHHH
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~~~  265 (488)
                      .....  .....++++.|+.++++.++.++..++++|++++..++.....+.+.|+++.|+.+|.+ .+ +.++..|+++
T Consensus       389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a  466 (780)
T 2z6g_A          389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  466 (780)
T ss_dssp             TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence            87633  22346899999999999999999999999999999887777888889999999999976 33 3899999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011316          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--  340 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~--  340 (488)
                      |++++...++   ....+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.+++  
T Consensus       467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~  545 (780)
T 2z6g_A          467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  545 (780)
T ss_dssp             HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchh
Confidence            9999875543   2346678899999999999883459999999999999986 555678889999999999998754  


Q ss_pred             --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                                          .+++..++.+|.+++.  ++.....+.+.|+++.|++++.++++.++..++.+|.++...
T Consensus       546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                                3456678888888875  456777788999999999999999999999999999999743


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      .+             ++..+.+.|+++.|..++++++++|+..|...|.+
T Consensus       624 ~~-------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~  660 (780)
T 2z6g_A          624 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR  660 (780)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            22             58889999999999999999999997665444433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.9e-35  Score=289.59  Aligned_cols=365  Identities=19%  Similarity=0.208  Sum_probs=302.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-Cchh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~  108 (488)
                      +.+|.+++.|.++++.++..|+++|.+++... .+....+++.|+||.|+++|.+++ ++++..|+++|.+|+.. ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            78999999999999999999999999987654 677888999999999999999998 99999999999999985 6899


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH  170 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~  170 (488)
                      +..+++.|+|+.|+.+|++ .+.++++.++++|++|+.+ +..+..+.+ ++++.|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6889999999999999985 456777775 57999999872                 12


Q ss_pred             ccHhHHHHHHHHHHHhhcCCCC-CChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccCCch---------
Q 011316          171 AKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDGTND---------  233 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~-~~~~~-~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~~~~---------  233 (488)
                      .++.++.+|+++|.||+...+. ...+. ..|+++.|+.++++      .+...++.++++|.||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3578999999999999987633 33333 36788899999874      4678999999999999865210         


Q ss_pred             ----------------hHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchh----hHHHhhCCChHHHHHH
Q 011316          234 ----------------KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQ----TQCIINHQALPCLLDL  292 (488)
Q Consensus       234 ----------------~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~~l  292 (488)
                                      -.+.+.+.++++.++.+|. +.++.+++.|+++|.||+.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                            0111223345677888885 467899999999999999865322    2234457889999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------ChhHHHHHHHHHHHhccCCCHHHHH
Q 011316          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIK  364 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~  364 (488)
                      |.++ +..++..|+|+|+|++.+.. .. ..+..|+++.|+++|.++        +.+++..|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 89999999999999998632 22 345778999999999886        357889999999999865 578899


Q ss_pred             HHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 011316          365 FLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       365 ~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~  402 (488)
                      .+.+.|+++.|++++++.  .+.+++.|.++|.+++...+
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            999999999999999986  78999999999999987655

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.3e-34  Score=284.84  Aligned_cols=367  Identities=18%  Similarity=0.217  Sum_probs=304.0

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC-Cch
Q 011316           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPK  149 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~  149 (488)
                      ..+.++.|+++|.+++ ++++..|+++|.+++..+++++..+++.|+|+.|+.+|+++++++++.|+++|.||+.+ +++
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4578999999999998 99999999999999988999999999999999999999999999999999999999985 578


Q ss_pred             hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------------------c
Q 011316          150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------------------S  211 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~------------------~  211 (488)
                      .+..+.+.|++++|+.+|....+..+++.++++|++|+.....+..+ ..++++.|++++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I-~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH-HHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH-HhccHHHHHHHHhccccccccccccccccccc
Confidence            89999999999999999955568889999999999999865333333 3678999999872                  2


Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCc----------
Q 011316          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDD----------  274 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~----------  274 (488)
                      .+..++..+.++|.|++..+++..+.+.+. |+++.|+.++.+      .+...++.|+++|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            357999999999999999887766777775 667899999864      456788999999999997521          


Q ss_pred             ---------------hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH---HHHH-HHHHcCChHHHHHH
Q 011316          275 ---------------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQ-AIIEAGIIGPLVNL  335 (488)
Q Consensus       275 ---------------~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~~~l~~L~~l  335 (488)
                                     .....+.+.++++.++.+|++..++.+++.|+++|.||+.+..   ...+ .+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           1122233445577889999755488999999999999988642   2223 34456789999999


Q ss_pred             HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316          336 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       336 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      |.+++..++..|+++|.|++....  ... .+..|+++.|+++|.++        ..+++..++++|.+++..+..    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            999999999999999999998653  223 34679999999999976        357888999999999866553    


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011316          408 GNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~  454 (488)
                              ....+.+.|+++.|..++.+.  ++++++.|..+|.++|..
T Consensus       437 --------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          437 --------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             --------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             --------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence                    266778999999999998775  899999999999999863

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.3e-35  Score=280.83  Aligned_cols=338  Identities=17%  Similarity=0.175  Sum_probs=282.6

Q ss_pred             hhcCCCC-ChhhHHHHhhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCH---
Q 011316           12 FSLLKPM-DPMFFIIQLQLESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV---   75 (488)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~i~~l~~~L~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i---   75 (488)
                      ++-..|+ ..+++.     |.+|.|+++|+..            +++++.+|+|+|.+++++. ++..+...+.+++   
T Consensus        56 ~~~~~~~~~~~~~~-----g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l  129 (458)
T 3nmz_A           56 MSSSQDSCISMRQS-----GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLL  129 (458)
T ss_dssp             HHSSTTHHHHHHHH-----TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHC-----CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence            3333443 335666     9999999999963            3799999999999999987 6777777777777   


Q ss_pred             -------HHHHHhhcCCC-Chh-----HHH-------HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--------
Q 011316           76 -------PRFIEFLSRDD-FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------  127 (488)
Q Consensus        76 -------~~L~~lL~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------  127 (488)
                             +.+++++.+.. +.+     +++       +|+|+|.|++. ++++|+.+.+.|+++.|+.++..        
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~  208 (458)
T 3nmz_A          130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT  208 (458)
T ss_dssp             HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence                   67777777652 122     444       99999999987 69999999999999999999942        


Q ss_pred             ---CCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhch
Q 011316          128 ---PTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPA  201 (488)
Q Consensus       128 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~  201 (488)
                         .++.+++.|+|+|.|++.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.+|+...  .........|+
T Consensus       209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga  287 (458)
T 3nmz_A          209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS  287 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence               34779999999999999988766666654 45699999999 7889999999999999999852  23344456799


Q ss_pred             HHHHHHhh-ccCChhHHHHHHHHHHHhccCCchhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---C
Q 011316          202 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---G  272 (488)
Q Consensus       202 ~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~  272 (488)
                      ++.|+++| ++.+..++..++.+|+|++...++....+. ..|+++.|+.+|.+.++    .++..|+++|.|++.   .
T Consensus       288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  367 (458)
T 3nmz_A          288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  367 (458)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence            99999975 567899999999999999984433334455 68999999999988654    389999999999996   6


Q ss_pred             CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011316          273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  352 (488)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~  352 (488)
                      +++.++.+.+.|+++.|+.+|.++ +..+++.|+|+|+|++.++++++..+.+.|+++.|+.++.+++..+++.|+++|.
T Consensus       368 ~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~  446 (458)
T 3nmz_A          368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  446 (458)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            788888899999999999999998 8899999999999999888999999999999999999999999999999999999


Q ss_pred             HhccCC
Q 011316          353 NATSGG  358 (488)
Q Consensus       353 ~l~~~~  358 (488)
                      |++.+.
T Consensus       447 nL~~~~  452 (458)
T 3nmz_A          447 NLMANR  452 (458)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            999865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.1e-33  Score=285.05  Aligned_cols=403  Identities=16%  Similarity=0.136  Sum_probs=339.4

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.+++.|.+ +++.++..|+.+|.++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++..+++.
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            789999999975 5899999999999997553  457788889999999999999998 999999999999999976788


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.++.++++.++..++.+|.+++..+++.+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888889999999999999999666667788889999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ...........++++.++.++.++++.++..++++|.+++...+...   ...++++.|++++.++++.++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65544555567999999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC-hhH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~-~~v  343 (488)
                      ++..++..+..+.+.++++.++.++.+.. ++.++..|+++|+|++.++++   .+..+.+.|+++.|++++.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            99988888888899999999999998641 378999999999999885432   4567888999999999999886 599


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN----------------------ILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~----------------------l~~~~  401 (488)
                      +..++++|.|++...  +....+.+.|+++.|++++.+++++++..+.+++.+                      +....
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            999999999999753  344778899999999999987777776655555444                      33221


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +             .+..+.+.|+++.|..++.+++++++..|...+.++..
T Consensus       451 ~-------------~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          451 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             h-------------HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence            1             35668889999999999999999999999999988764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.6e-33  Score=284.43  Aligned_cols=403  Identities=16%  Similarity=0.152  Sum_probs=345.2

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.+++.|.++ +++++..|+.+|.++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            6799999999864 899999999999986553  357788888999999999999998 999999999999999866788


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.+++++++.++..++.+|.+++..+++.+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999987888888999999999999999666667888999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ...........++++.++.++.+.+..++..++++|.+++...... .  ...++++.|+.++.+.++.++..++++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            7655555666789999999999999999999999999999764332 1  112789999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCC-hhH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV---NQIQAIIEAGIIGPLVNLLLNAE-FEI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~l~~L~~ll~~~~-~~v  343 (488)
                      ++..++..+..+.+.++++.|+.++.+..+ +.++..|+++|+|++..++   .....+.+.|+++.|+++|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999887888888899999999999987523 7999999999999997433   23344778899999999999874 699


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~  401 (488)
                      ++.|+++|.|++...  +....+.+.|+++.|++++.+.+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999754  34478889999999999987633                      456677888888776543


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      .             .+..+.+.|+++.|..++.+.+++++..|...+.++..
T Consensus       448 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            2             36678889999999999999999999999999888764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=3.1e-32  Score=284.04  Aligned_cols=402  Identities=16%  Similarity=0.158  Sum_probs=342.2

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.|++.|.+ +++.++..|+.+|.++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            679999999985 4899999999999996654  355777888999999999999998 999999999999999977788


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.++++.|+.++........+..++.+|.+++.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888888889999999999999665566677889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ...........++++.|+.++.+.+..++..++++|.+++......   ....++++.|+.++.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544455556789999999999999999999999999999765432   1123688999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCh-hH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~-~v  343 (488)
                      ++..++..+..+.+.++++.|+.+|.+..+ ..++..|+++|+|++..+++   ....+.+.++++.|++++.+++. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888888899999999999987423 38999999999999874333   34567789999999999998864 99


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~  401 (488)
                      +..|+++|+|++..  +.....+.+.|+++.|++++.+.+                      ++++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            99999999999974  455578889999999999987543                      356677888888876322


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .             .+..+.+.|+++.|..++.+++++++..|...+.++.
T Consensus       584 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            1             3667888999999999999999999999999887765

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.2e-29  Score=237.60  Aligned_cols=270  Identities=19%  Similarity=0.192  Sum_probs=234.7

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      ...+..|+++|.+++. ++++|+.+++.|+++.|+.+|..           .++.+++.|+|+|.|++.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4566789999999999 68999999999999999999952           34789999999999999888766776654


Q ss_pred             -cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc
Q 011316          157 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       157 -~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                       .|+++.|+.+| ++.+++++..++|+|.+|+...  .........|++|.|+++| ++.+..+++.++.+|.+++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45699999999 7888999999999999999852  2334455679999999975 66789999999999999998554


Q ss_pred             hhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011316          233 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  304 (488)
Q Consensus       233 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~  304 (488)
                      +....+. ..|+++.|+.+|.+.++    +++..|+++|.+++.   .+++.++.+.+.|+++.|+.+|+++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            4445565 67999999999987654    489999999999997   6788888899999999999999998 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316          305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  360 (488)
                      |+|+|+|++.++++.++.+.+.|+++.|++++.+++..+++.|+++|.|++.+...
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988899999999999999999999999999999999999999987543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=3.5e-29  Score=234.54  Aligned_cols=273  Identities=18%  Similarity=0.147  Sum_probs=236.5

Q ss_pred             CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----------CCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316           43 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      +...+..|+++|.++..+  .+.++.+++.|+++.|+.+|..          ..++.++..|+++|.+++.++++.+..+
T Consensus        45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345566899999997653  5789999999999999999952          1226799999999999999777788877


Q ss_pred             HhC-CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC-CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          113 IDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       113 ~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ... |+++.|+.+|+++++++++.|+++|.||+.. ++..+..+.+.|+++.|+++|.++.+..+++.++.+|++|+...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            654 5699999999999999999999999999985 56678899999999999998756678899999999999999844


Q ss_pred             -CCCChhh-hhchHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhH
Q 011316          191 -PQPLFEQ-TRPALPALERLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP  261 (488)
Q Consensus       191 -~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  261 (488)
                       ....... ..|+++.|+.+++++++    +++..++++|.|++.   ..++..+.+.+.|+++.|+.+|.+++..++..
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence             3333333 57999999999987654    599999999999996   56677788999999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011316          262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      |+++|+|++.++++.+..+.+.|+++.|+.+++++ +..+++.|+++|.|++.+++.
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988888889999999999999999999 899999999999999986554

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.2e-26  Score=208.24  Aligned_cols=244  Identities=27%  Similarity=0.406  Sum_probs=223.9

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ++.++.+++.|+++++.++..|+++|.+++... .+....+++.|+++.|+++|++++ ++++..|+++|.+++..+++.
T Consensus         1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence            467999999999999999999999999988765 467888899999999999999998 999999999999999977999


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.+++++++.++..++++|++++...+..+..+.+.|+++.+++++ .+.++.++..++++|.+++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999988888889999999999999999 77889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          189 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..+.. ......++++.++.++.++++.++..++++|.+++..++...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            75322 44555899999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCCch
Q 011316          268 NIVTGDDM  275 (488)
Q Consensus       268 ~l~~~~~~  275 (488)
                      +++...+.
T Consensus       238 ~l~~~~~~  245 (252)
T 4hxt_A          238 NIKSGGWL  245 (252)
T ss_dssp             HHHHTCBC
T ss_pred             HHHcCCCc
Confidence            99986543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2e-26  Score=208.51  Aligned_cols=240  Identities=28%  Similarity=0.433  Sum_probs=222.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      |.++.|+++|++++ ++++..|+++|.+++...++.+..+.+.|+++.|+.+++++++.++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999999 99999999999999997888999999999999999999999999999999999999999888899


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .+.+.|+++.++.++ ++.++.++..++++|.+++... .........++++.++++++++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6788999999999999999654 33444455789999999999999999999999999999988


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +...+.+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.++.+++++ ++.++..|+++|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            77778889999999999999999999999999999999998888888889999999999999998 89999999999999


Q ss_pred             HhcC
Q 011316          312 ITAG  315 (488)
Q Consensus       312 l~~~  315 (488)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.7e-26  Score=207.74  Aligned_cols=239  Identities=37%  Similarity=0.575  Sum_probs=217.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++.|++++++++..|++.|.++++.. .+....+++.|+++.|+++|++++ +.++..|+++|.+++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            56788999999999999999999999988863 677888999999999999999999 9999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+.+.|+++.|+.+++++++.+++.|+++|++++.+.+.....+.+.|+++.++.++ ++.++.++..++++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988776547888999999999999 777899999999999999986


Q ss_pred             CC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          190 KP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+ ........++++.++.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            52 22334457999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             hhc
Q 011316          269 IVT  271 (488)
Q Consensus       269 l~~  271 (488)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.7e-26  Score=209.01  Aligned_cols=239  Identities=35%  Similarity=0.556  Sum_probs=220.1

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.++++|++++ ++++..|+++|.++....++.+..+.+.|+++.|+.+|+++++.++..++++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            56889999999999 89999999999887665778888999999999999999999999999999999999998888899


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .+.+.|+++.++.++ +++++.++..++++|.+++...+.. ......++++.++.+++++++.++..++++|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6688999999999999999887544 55566899999999999999999999999999999988


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            77878888999999999999999999999999999999988888888889999999999999998 99999999999999


Q ss_pred             Hhc
Q 011316          312 ITA  314 (488)
Q Consensus       312 l~~  314 (488)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=1.8e-24  Score=197.13  Aligned_cols=236  Identities=16%  Similarity=0.159  Sum_probs=197.3

Q ss_pred             hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH-hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316          214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      .+-+..|+..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3567788999999988654 4566888899999999 9999999999999999999999999888999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011316          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  372 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~  372 (488)
                      |+++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|++++.. +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643788999999999999998888888899999999999999999999999999999999976 56788899999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 011316          373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY  451 (488)
Q Consensus       373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~  451 (488)
                      +.|+.+|.++++.++..++.+|.+++...+....... ...+.+...+++     .+..++.++ +.++++++..++++|
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977443211000 011234555554     356666565 789999999999999


Q ss_pred             cCCCCC
Q 011316          452 WVEEDE  457 (488)
Q Consensus       452 ~~~~~~  457 (488)
                      |.++++
T Consensus       286 f~~~~~  291 (296)
T 1xqr_A          286 FSSPAD  291 (296)
T ss_dssp             CC----
T ss_pred             cCCCCC
Confidence            976543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-23  Score=206.41  Aligned_cols=399  Identities=15%  Similarity=0.140  Sum_probs=299.8

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +..+.+.+.+.+. +..+...+++.|.. ++.+  +..+..+..+.++.|.+++++   +.+|..|+-+|+.+.......
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~a~L~lLsa-ACi~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~  328 (778)
T 3opb_A          255 GLSKLFKKRVFEEQDLQFTKELLRLLSS-ACID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLT  328 (778)
T ss_dssp             THHHHHHHHHHSSCCHHHHHHHHHHHHH-HCCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCT
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHH-HhCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCC
Confidence            5567777777654 44444445444444 6654  455666777889999999965   588999999999988733221


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ...+.  ...+.+.+++.+++.+-++.|++.|+.++.+.. .++.+.+ .+++..|+.++....+.++...++.++.|++
T Consensus       329 ~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt  405 (778)
T 3opb_A          329 CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS  405 (778)
T ss_dssp             TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred             cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence            11111  246777778877776679999999999987655 5565554 4569999999954577889999999999999


Q ss_pred             cCCCCC---------------------------------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          188 RGKPQP---------------------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       188 ~~~~~~---------------------------------------~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ...+..                                       ......|++|.|+.++.++++.++..++++|.+++
T Consensus       406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS  485 (778)
T 3opb_A          406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT  485 (778)
T ss_dssp             CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            865321                                       01123789999999999999999999999999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHHhh----CCChHHHHHHhcc-cchh-
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN----HQALPCLLDLLTQ-NYKK-  299 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~~L~~lL~~-~~~~-  299 (488)
                      ... ..+..+++.|+++.|+.++.+....   .+..|+.+|++++...+...  ++.    .++++.|+.+|.. +... 
T Consensus       486 ~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~  562 (778)
T 3opb_A          486 RSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDD  562 (778)
T ss_dssp             TSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSS
T ss_pred             CCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccc
Confidence            764 4557788999999999999886543   79999999999996443221  221    3889999999983 2111 


Q ss_pred             -----------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316          300 -----------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       300 -----------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                                 .-+.+|+.+|.|++..+    .+.++.++.. |+++.|..++.+++..+|+.|+++++|++...  +.+
T Consensus       563 ~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i  640 (778)
T 3opb_A          563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTI  640 (778)
T ss_dssp             CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGT
T ss_pred             ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHH
Confidence                       22779999999999964    3456778884 89999999999999999999999999999743  332


Q ss_pred             -HHHHHC------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-
Q 011316          364 -KFLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-  435 (488)
Q Consensus       364 -~~l~~~------~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-  435 (488)
                       ..+...      +.++.|+.+++.++.+++..|.++|.++....+..           ....+...++++.+..++.+ 
T Consensus       641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------a~~ll~~~~gi~~Ll~lL~~~  709 (778)
T 3opb_A          641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------AKELLTKKELIENAIQVFADQ  709 (778)
T ss_dssp             GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------HHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------HHHHHHccccHHHHHHHHhcc
Confidence             222211      23778999999999999999999999996544432           14445555899999999877 


Q ss_pred             -CCHHHHHHHHHHHHHhcC
Q 011316          436 -DNTEIYEKAVKILETYWV  453 (488)
Q Consensus       436 -~~~~v~~~a~~~l~~~~~  453 (488)
                       ++++++.++..++.++++
T Consensus       710 ~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          710 IDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence             899999999999999997

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-23  Score=209.92  Aligned_cols=322  Identities=10%  Similarity=0.108  Sum_probs=257.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCch
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      +..+.+.+.|.+++.+.+..|++.|..+.. . .+....+. +.++++.|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-K-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-S-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-C-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence            456778888888777779999999999644 3 45555555 45679999999996 55 78999999999999973331


Q ss_pred             --------------------------------------hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316          108 --------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus       108 --------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  149 (488)
                                                            ++..+.+.|+++.|+.++.++++.+++.++++|.+++.+ +.
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~  489 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN  489 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence                                                  356678999999999999999999999999999999976 66


Q ss_pred             hHHHHHhcCChHHHHHHhcccccH--hHHHHHHHHHHHhhcCCCCCChh---hhhchHHHHHHhhcc-CCh---------
Q 011316          150 CRDLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS-NDD---------  214 (488)
Q Consensus       150 ~~~~~~~~~~i~~l~~~l~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~~~L~~ll~~-~~~---------  214 (488)
                      .|..+.+.|++++|+.++...++.  ..+..|+.+|.+++.........   ...++++.|+.+|.. +..         
T Consensus       490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~  569 (778)
T 3opb_A          490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE  569 (778)
T ss_dssp             GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence            899999999999999999544333  28899999999998544111100   113899999999983 221         


Q ss_pred             ----hHHHHHHHHHHHhccCCc----hhHHHHHHh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC-
Q 011316          215 ----EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-  284 (488)
Q Consensus       215 ----~v~~~al~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-  284 (488)
                          --+..|+.+|.|++..++    +....+++. |+++.|..++.++++.+++.|+++++|++.......+.+++.+ 
T Consensus       570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~  649 (778)
T 3opb_A          570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN  649 (778)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred             cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence                127799999999998763    334667774 8999999999999999999999999999984432223444322 


Q ss_pred             -----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHhc--CChhHHHHHHHHHHHhcc
Q 011316          285 -----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS  356 (488)
Q Consensus       285 -----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~  356 (488)
                           .++.|+.++++. +.++|+.|+|+|+|++..++...+.+++. ++++.++.++++  ++++++..++.++.|++.
T Consensus       650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                 377899999888 99999999999999987778888888876 799999999999  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=3.4e-22  Score=175.31  Aligned_cols=199  Identities=38%  Similarity=0.586  Sum_probs=184.9

Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh
Q 011316          198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  277 (488)
Q Consensus       198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  277 (488)
                      ..+..+.+..+++++++.++..++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            35778899999999999999999999999998887888889999999999999999999999999999999998888888


Q ss_pred             HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316          278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                      ..+.+.|+++.++.+|+++ ++.++..|+++|+|++.++++....+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999 999999999999999998888888999999999999999999999999999999999985


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316          358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       358 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                       +++....+.+.|+++.|.+++.+++++++..++++|.++.
T Consensus       169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             4677888899999999999999999999999999999874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2.5e-22  Score=176.16  Aligned_cols=199  Identities=33%  Similarity=0.522  Sum_probs=181.4

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~  150 (488)
                      ..+..+.|+.+|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.+|+++++.++..|+++|++++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999999 999999999999999878999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       151 ~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      +..+.+.|+++.++.++ ++.++.++..++++|.+++...+. .......++++.+++++++++..++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999 777899999999999999986532 2334557899999999999999999999999999999


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .++.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            877777888899999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=2.9e-21  Score=175.93  Aligned_cols=226  Identities=17%  Similarity=0.144  Sum_probs=185.3

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  166 (488)
                      .+-+..|+..|..++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999999 6778888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316          167 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      +..+.+..+++.|+|+|++++.+.+. .......++++.|+.++++++..++..++|+|.+++..+++..+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            95455789999999999999987633 33444578999999999999999999999999999988888889999999999


Q ss_pred             HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh--CCC---hHHHHHHhcccc-hhhHHHHHHHHHHHHhc
Q 011316          246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQA---LPCLLDLLTQNY-KKSIKKEACWTISNITA  314 (488)
Q Consensus       246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~---~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~  314 (488)
                      .|+.+|.++++.++..++.+|++++...+......-.  ..+   ++.-.+-+++.+ ..++...+..++.++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999875443332221  111   111233334221 34555666666666654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=3.1e-20  Score=161.66  Aligned_cols=197  Identities=19%  Similarity=0.152  Sum_probs=170.0

Q ss_pred             CHHHHHHhhcCCCCh--hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316           74 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (488)
                      .+|.++++|++++ +  +++..|++++.+++..+++++..+.+.|+||.|+++|+++++++++.|+++|.||+.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  889999999999998789999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------cCChh
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE  215 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~  215 (488)
                      ..+.+.|++++|+++|..+.+.++++.++.+|++|+.....+.. ...++++.|+.++.                ..+..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995467889999999999999987544333 33567888887653                12568


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC
Q 011316          216 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~  272 (488)
                      ++..+..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.++.+|.||++.
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776666777765 678999999864      3567889999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=5.3e-20  Score=160.15  Aligned_cols=196  Identities=18%  Similarity=0.184  Sum_probs=166.2

Q ss_pred             cHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           31 SLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        31 ~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+|.+++.|+++++  +++..|++.+.+++... .+....+++.|++|.|+++|.+++ +++|..|+++|.+++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            68899999999888  89999999999977654 567888899999999999999988 999999999999999988999


Q ss_pred             hHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---------------cccc
Q 011316          109 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------------EHAK  172 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~  172 (488)
                      +..+.+.|+++.|+++|+ +++.++++.++.+|++|+.... .+..+.+ +++++|+.++.               ...+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 5799999999999999997654 5666666 46888887652               0136


Q ss_pred             HhHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 011316          173 LSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~  230 (488)
                      +.++.++..+|.+++... .....+. ..|+++.|+.+++.      .+.+.++.++.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            789999999999999865 3344343 35789999999984      2678999999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.81  E-value=2.9e-18  Score=174.69  Aligned_cols=382  Identities=11%  Similarity=0.120  Sum_probs=285.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+|.+.+.+.++++.+|..|+..|..++...+.    ......++|.+..++++++ +.+|..|+.++..++...+.. 
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-  237 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH-
Confidence            4567777788889999999999999998865421    1234578899999999988 899999999999988633221 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                        .....+++.+..++.++++.+|..++.+|+.++...+.   .......++.++.++ +++++.++..+++++..++..
T Consensus       238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence              12234688888899999999999999999999753211   122334677888888 778899999999999999886


Q ss_pred             CCCCCh--hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          190 KPQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       190 ~~~~~~--~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ......  .....++|.+..+++++++.++..+++++..++..-...   .....+++.+..+++++++.+|..++.+++
T Consensus       312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~  388 (588)
T 1b3u_A          312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            533221  345678899999999999999999999999987543221   122357888999999988999999999988


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  346 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  346 (488)
                      .++......   .....+++.+..++.++ ++.+|..++.++..++.. ..+    .....+++.+...+.+++..+|..
T Consensus       389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~  460 (588)
T 1b3u_A          389 CVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREA  460 (588)
T ss_dssp             HHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHH
Confidence            887633211   11235678888888887 899999999999988752 111    111236788888888889999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011316          347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL  426 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  426 (488)
                      |+.+++.++....++..    ...+++.|..++++++..+|..++.++..+.......             . + ....+
T Consensus       461 a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-------------~-~-~~~~~  521 (588)
T 1b3u_A          461 ATSNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-------------I-T-TKHML  521 (588)
T ss_dssp             HHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-------------H-H-HHHTH
T ss_pred             HHHHHHHHHHHhCchhH----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-------------H-H-HHHHH
Confidence            99999999865443321    2357888888888889999999999999887653321             0 1 12346


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          427 EKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       427 ~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +.+..+..+++++|+..+.+.+..+..
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            777778888888898888888887765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.80  E-value=2.4e-18  Score=175.20  Aligned_cols=382  Identities=12%  Similarity=0.135  Sum_probs=285.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+|.+...++++++.+|..|+.+|..++...+.    ......++|.+.+++++++ ..+|..++.+++.++.....  
T Consensus       203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--  275 (588)
T 1b3u_A          203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--  275 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence            4577888888899999999999999998765421    1233458899999998888 89999999999999862111  


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                       ......+++.+..+++++++.+|..++++|+.++...+. .+........++.+..++ ++.+..++..++++|..++.
T Consensus       276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP  353 (588)
T ss_dssp             -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred             -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence             112335689999999999999999999999999864332 111122234566777777 77889999999999999875


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .-..  ......++|.+..+++++++.++..++.++..+.......   .....+++.+..++.+.++.+|..++.+++.
T Consensus       354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~  428 (588)
T 1b3u_A          354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            4211  1223567888999999999999999999998887543211   1223577888888999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      ++......   .+...+++.+...+.++ +..+|..|+.+++.++.. .++    .....++|.|..++.++++.+|..+
T Consensus       429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a  500 (588)
T 1b3u_A          429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTT  500 (588)
T ss_dssp             HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred             HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            87532211   12234678888889888 889999999999999873 122    1123588888888888899999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHH
Q 011316          348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  427 (488)
Q Consensus       348 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  427 (488)
                      +++++.++...+.+    .....+++.|...++++++.++..+++++..+.......           +    .....++
T Consensus       501 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~----~~~~~~p  561 (588)
T 1b3u_A          501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T----LQSEVKP  561 (588)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H----HHHHHHH
T ss_pred             HHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h----hHHHHHH
Confidence            99999998643222    122358999999999999999999999999997643211           1    1123456


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          428 KIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       428 ~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .+..+.++++++|+..|...+..+-
T Consensus       562 ~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          562 ILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhh
Confidence            6777889999999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.80  E-value=2.3e-18  Score=182.82  Aligned_cols=355  Identities=13%  Similarity=0.143  Sum_probs=260.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..-+.+++.|.++++.+|..++.++..++..+....     ..+.++.|++.+.+++ +.++..++.+|+.++...++..
T Consensus        90 ~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~  163 (852)
T 4fdd_A           90 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEIL  163 (852)
T ss_dssp             HHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHh
Confidence            344567888888999999999999999988652221     2467899999999988 8999999999999987433321


Q ss_pred             HHHH----hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          110 RVVI----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       110 ~~~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                      ..-.    -..+++.+++.+.++++.+|..|++++.++....+..... .-...++.++..+ .++++.++..++++|..
T Consensus       164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~  241 (852)
T 4fdd_A          164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVM  241 (852)
T ss_dssp             HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHH
T ss_pred             chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence            1100    1235677778888899999999999999988654421100 0113466677766 67789999999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----------
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------  251 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----------  251 (488)
                      ++...+..-.....++++.+...+.+.++.++..++.++..++.....  ......   .+++.++..+           
T Consensus       242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~  319 (852)
T 4fdd_A          242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLK  319 (852)
T ss_dssp             HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence            998654333334567888889999999999999999999999865421  112221   4556666666           


Q ss_pred             CC-----------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316          252 RH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       252 ~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      .+           .+..+|..+..++..++...+.   .++. .+++.+...++++ ++.+|..|++++++++.+..+..
T Consensus       320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~  394 (852)
T 4fdd_A          320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGM  394 (852)
T ss_dssp             C------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHH
T ss_pred             CCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHH
Confidence            23           2346788999999999875432   2222 4678888888888 99999999999999999766654


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      .... .++++.++..+.++++.||..|++++++++...... ...++  .++++.|.+.+.++++.++..++++|.+++.
T Consensus       395 ~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          395 IPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4333 358999999999999999999999999998532110 00111  1467888888888899999999999999987


Q ss_pred             hhh
Q 011316          400 AGE  402 (488)
Q Consensus       400 ~~~  402 (488)
                      ...
T Consensus       472 ~~~  474 (852)
T 4fdd_A          472 EAC  474 (852)
T ss_dssp             HHG
T ss_pred             Hhh
Confidence            654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.79  E-value=5.8e-16  Score=150.70  Aligned_cols=429  Identities=14%  Similarity=0.132  Sum_probs=303.9

Q ss_pred             hhcCCCCChhhHHHHhhhccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCc----------------cHHHHH-Hc
Q 011316           12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QS   72 (488)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~   72 (488)
                      -++.+.....+.+     ++++.++..|+.  +|.++...++..|.++.+.+..+                ..+.++ +.
T Consensus        47 k~~sk~y~~~Vg~-----~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~  121 (651)
T 3grl_A           47 KSLSKKYRLEVGI-----QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ  121 (651)
T ss_dssp             HHTTTTTTTHHHH-----HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST
T ss_pred             HHHHHHhHHHhhh-----hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC
Confidence            4556666666667     899999999986  57888888999999988755221                122333 56


Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch-hhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~  150 (488)
                      +.++.|+.+|++.+ ..+|..++.+|..++...++ .++.+. ..++++.|+.+|++..+.+|..++.+|.+++.++++.
T Consensus       122 ~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i  200 (651)
T 3grl_A          122 ENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI  200 (651)
T ss_dssp             HHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence            78999999999998 89999999999999987766 677777 4499999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChh------HHH--
Q 011316          151 RDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDE------VLT--  218 (488)
Q Consensus       151 ~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~------v~~--  218 (488)
                      ++.+.-.|+++.++.++....   ...+...++.++.+|.+.++ +.......++++.|..++..++..      ...  
T Consensus       201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~  280 (651)
T 3grl_A          201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL  280 (651)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence            999999999999999995332   23678899999999999873 555556678999999998754321      222  


Q ss_pred             -HHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhCC-----
Q 011316          219 -DACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ-----  284 (488)
Q Consensus       219 -~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----  284 (488)
                       .++.++.-++..+.      .....+.+.|++..+++++...  ...++..|+.+++.+.++++.....+.+..     
T Consensus       281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~  360 (651)
T 3grl_A          281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP  360 (651)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence             36667777665422      2345678889999999998765  467889999999999999887666554322     


Q ss_pred             ----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CC---hHHHHHHHhcCChhHHHHH
Q 011316          285 ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA----------GI---IGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       285 ----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---l~~L~~ll~~~~~~v~~~a  347 (488)
                          ++..++.++.+.....+|.+|+.++..+..++++....+...          +.   -..++.-+.+.|+--.--|
T Consensus       361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfA  440 (651)
T 3grl_A          361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCA  440 (651)
T ss_dssp             CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHH
T ss_pred             CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHH
Confidence                344455556666578899999999999999888766555542          11   1134455555666555668


Q ss_pred             HHHHHHhccCCCHHHHHHHHH--------CCC---hHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch
Q 011316          348 AWAISNATSGGSNEQIKFLVS--------QGC---IKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL  415 (488)
Q Consensus       348 ~~aL~~l~~~~~~~~~~~l~~--------~~~---~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~  415 (488)
                      +.+|.++.... ++.+..+.+        ...   ++.+..+|.. .++.++..-+-.|..-+.-++..           
T Consensus       441 avil~hll~~n-~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A-----------  508 (651)
T 3grl_A          441 AVALAHALQEN-ATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA-----------  508 (651)
T ss_dssp             HHHHHHHHTTC-HHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH-----------
T ss_pred             HHHHHHHHcCC-HHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH-----------
Confidence            88888988753 444444433        111   3344555543 34454443333333322222221           


Q ss_pred             HHHHHHhhccHHHHHHhhcC-C---CHHHHHHHHHHHHHhcCCCCCC
Q 011316          416 FAQAIDDAEGLEKIENLQSH-D---NTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       416 ~~~~l~~~g~~~~l~~l~~~-~---~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      ....+.+...++.|.+...+ .   +.-|+-.+..++.-+|+...++
T Consensus       509 V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          509 VTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            45666666568888876533 2   2347888888888877765543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=9.3e-18  Score=178.20  Aligned_cols=387  Identities=15%  Similarity=0.157  Sum_probs=273.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH
Q 011316           40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP  119 (488)
Q Consensus        40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  119 (488)
                      .+.++.+|..|+..|.+.+... ......-....+-+.+++.|.+++ +.+|..++.+++.++......    .-.+.++
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll~  131 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLLP  131 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHHH
Confidence            4678999999999999987653 222222223345567778888887 899999999999998733110    1135789


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH----hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011316          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  195 (488)
Q Consensus       120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  195 (488)
                      .|+..+.++++.+++.++.+|+.++.+.+.....-.    -...++.+++.+ .+.++.++..|++++..+....+....
T Consensus       132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~  210 (852)
T 4fdd_A          132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM  210 (852)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence            999999999999999999999999865443211100    012355556666 677889999999999988765432222


Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316          196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       196 ~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      .....+++.+..++.++++.++..++++|..++...++.....++ ++++.+...+.+.++.++..|+..+..++.... 
T Consensus       211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-  288 (852)
T 4fdd_A          211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-  288 (852)
T ss_dssp             TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence            234578888999999999999999999999999766544333333 577888888898899999999999999886431 


Q ss_pred             hhHHHhhC---CChHHHHHHh-----------cc--c--------chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011316          276 QTQCIINH---QALPCLLDLL-----------TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       276 ~~~~~~~~---~~~~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  331 (488)
                      . ...+..   .+++.++..+           .+  .        .+..+|+.|..++..++...++   .++. .+++.
T Consensus       289 ~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~  363 (852)
T 4fdd_A          289 C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL  363 (852)
T ss_dssp             H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence            1 112221   3455566655           22  0        1346799999999998863222   1122 36788


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011316          332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG  411 (488)
Q Consensus       332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  411 (488)
                      +...+.++++.+|..|+++|++++..........+  .++++.+...++++++.++..+++++.++.........     
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----  436 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-----  436 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence            88888888999999999999999986643222222  25789999999999999999999999999865432110     


Q ss_pred             ccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       412 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                        ..+..     +.++.+...+.+++++++..|.+.+.++.+.
T Consensus       437 --~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          437 --DTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             --TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence              00111     2356677777788999999999999887653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.76  E-value=1.6e-15  Score=153.67  Aligned_cols=341  Identities=15%  Similarity=0.190  Sum_probs=247.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.+++.+++++..++..+..++..++... .+.   .  .-+++.+.+-|++++ +.+|..|+++++++.  .++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~--~~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR--VDKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC--SGGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC--hHHHH
Confidence            44667888888889988888877777766532 111   1  235678888899988 999999999999986  35544


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+     ++.+.+++.++++.+|..|+.++.+++...++.   +.+.+.++.+..++ .+.++.++..|+.+|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            433     678999999999999999999999998766553   22235678888888 788999999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          190 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+.. ......+.++.++..+.+.++..+...++++..++..++....     .+++.+..++++.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6433 2334456677888888888899999999999988865543322     567888888999999999999999999


Q ss_pred             hhcC---CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH------------------HHHH----H
Q 011316          269 IVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN------------------QIQA----I  323 (488)
Q Consensus       269 l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~------------------~~~~----l  323 (488)
                      +...   +++..+.+. ..+.+.++.++. + ++.+|..|+.++..++...++                  .+..    +
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L  342 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM  342 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence            8742   233333222 244566665554 5 677888888888877641111                  1111    1


Q ss_pred             H---Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011316          324 I---EA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  396 (488)
Q Consensus       324 ~---~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  396 (488)
                      .   +.    .+++.|..++.+.+.+++..++++++.++....+ ...     ..++.|.++++.....++..++.++..
T Consensus       343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~  416 (591)
T 2vgl_B          343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRD  416 (591)
T ss_dssp             HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-HHH-----HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            1   11    2456666777777889999999999999876532 222     357888888888888888888888888


Q ss_pred             HHHhhh
Q 011316          397 ILKAGE  402 (488)
Q Consensus       397 l~~~~~  402 (488)
                      ++...+
T Consensus       417 ii~~~p  422 (591)
T 2vgl_B          417 IFRKYP  422 (591)
T ss_dssp             HHHHSC
T ss_pred             HHHHCc
Confidence            876544

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.71  E-value=8e-16  Score=155.82  Aligned_cols=301  Identities=17%  Similarity=0.150  Sum_probs=210.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+.+.|+++++.+|..|+++|.++..   .+...     .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            46677788889999999999988888642   22222     34678899999988 99999999999999886665432


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                         +.++++.+..+|.++++.++..|+.+|+.++.+.+.........+.+..++..+ .+.++-.+...+.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987663210001112355677776 5567778888888887776332


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       191 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                          ......+++.+..++++.++.|+..|++++..+...   +++..+.+. ..+.+.|+.++. +++.+|..++.+|+
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                233467888888889999999999999999998742   233333333 255667776654 67888888888888


Q ss_pred             HhhcCCchhh------------------HHHh-------hC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011316          268 NIVTGDDMQT------------------QCII-------NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       268 ~l~~~~~~~~------------------~~~~-------~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      .++...+...                  ...+       +.    .+++.|...+.+. +..+|..+++++++++...+.
T Consensus       308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence            8875322211                  0000       11    2345556666677 889999999999999986554


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ...     .+++.|++++...+..++..+..++.++..
T Consensus       387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~  419 (591)
T 2vgl_B          387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFR  419 (591)
T ss_dssp             HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            322     245666676766666666666666666643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.69  E-value=3e-15  Score=137.13  Aligned_cols=259  Identities=15%  Similarity=0.162  Sum_probs=202.3

Q ss_pred             HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011316           69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~  148 (488)
                      ....+.++.|++.|.+++ +.+|..|+++|+++..  +         +.++.|+.++.++++.+|..++++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345678999999999988 9999999999999873  1         357899999999999999999999999864332


Q ss_pred             hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316          149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ....      .++.+...+..+.++.++..++++|..+....+    .....+++.+..++.++++.++..++++|+++.
T Consensus        87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            2111      223333333367889999999999999975331    123467899999999999999999999999875


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011316          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  308 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~  308 (488)
                      .           .+.++.|..++.++++.+|..++++|+.+....+         ..++.+...++++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2578999999999999999999999999854322         3567889999988 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHH
Q 011316          309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIV  387 (488)
Q Consensus       309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~  387 (488)
                      |+++..           ...++.|+..+.+++  ++..++.+|+.+..   +         ..++.|.+++.+ ++++++
T Consensus       216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence            999852           247888999988754  88999999999853   1         357788888864 566777


Q ss_pred             HHHHHHHH
Q 011316          388 TVCLEGLE  395 (488)
Q Consensus       388 ~~al~~L~  395 (488)
                      ..++..|.
T Consensus       271 ~~~~~~l~  278 (280)
T 1oyz_A          271 TSAIDKLK  278 (280)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77776664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.69  E-value=1.4e-13  Score=134.10  Aligned_cols=373  Identities=10%  Similarity=0.090  Sum_probs=266.1

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316           27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  105 (488)
Q Consensus        27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~  105 (488)
                      +..+.++.|+.+|.+++..+|+.+++.|..++...+......+. ..++++.|+.+|+++. +.+|..++..|.+++.++
T Consensus       119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTC
T ss_pred             cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCC
Confidence            34578999999999999999999999999998876333556666 4599999999999998 899999999999999999


Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc-----HhHH
Q 011316          106 SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----LSML  176 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-----~~v~  176 (488)
                      ++.++.+.-.|+++.|+.+++.+.    ..+..-|+.++.||.+.++..+..+.+.+.++.|..++....+     ....
T Consensus       198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~  277 (651)
T 3grl_A          198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV  277 (651)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence            999999999999999999998743    4788999999999999999899999999999999999842221     1122


Q ss_pred             HH---HHHHHHHhhcCCCC-------CChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhC--
Q 011316          177 RN---ATWTLSNFCRGKPQ-------PLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAG--  242 (488)
Q Consensus       177 ~~---a~~~L~~l~~~~~~-------~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~--  242 (488)
                      .+   ++.++.-++.....       .......|+++.+++++...  ...++..++.+++.+.++++.....+.+..  
T Consensus       278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp  357 (651)
T 3grl_A          278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP  357 (651)
T ss_dssp             HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence            33   55555566554321       12334578899999998865  578999999999999998877666665432  


Q ss_pred             -------CHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhC----------C---ChHHHHHHhcccchhhH
Q 011316          243 -------VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINH----------Q---ALPCLLDLLTQNYKKSI  301 (488)
Q Consensus       243 -------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~---~~~~L~~lL~~~~~~~v  301 (488)
                             ++..|+.++.+ ....+|.+++.++..+...++.....+...          +   .-..+..-+-+. ++--
T Consensus       358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~-d~~~  436 (651)
T 3grl_A          358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST-DSLS  436 (651)
T ss_dssp             SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS-CHHH
T ss_pred             CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC-chHH
Confidence                   33334444554 346889999999999999887554444421          1   112233444444 5544


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH--------c---CChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC
Q 011316          302 KKEACWTISNITAGNVNQIQAIIE--------A---GIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ  369 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~--------~---~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  369 (488)
                      -..|+.++..+..++++.......        .   ..++.+...+..+ ++.++.--+..|+..... ++.....+...
T Consensus       437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e-~p~AV~dFL~~  515 (651)
T 3grl_A          437 NWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSN-CPIAVTHFLHN  515 (651)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC-ChHHHHHHHcC
Confidence            456888888888887877665543        1   1255556666543 566666666777777665 45666666555


Q ss_pred             C-ChHHHHhhcCC--CCHH--HHHHHHHHHHHHHHhhh
Q 011316          370 G-CIKPLCDLLNC--PDPR--IVTVCLEGLENILKAGE  402 (488)
Q Consensus       370 ~-~~~~L~~ll~~--~~~~--v~~~al~~L~~l~~~~~  402 (488)
                      + .++.|++.+.+  ++.+  ++-.+.-.|+-....+.
T Consensus       516 ~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~  553 (651)
T 3grl_A          516 SANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFND  553 (651)
T ss_dssp             TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC
Confidence            5 58999987743  2233  33333344444444444

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=7.5e-15  Score=134.45  Aligned_cols=255  Identities=15%  Similarity=0.115  Sum_probs=200.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ...++.+++.|.++++.+|..|++.|.++..            .+.++.|+++|++++ +.+|..|+++|+.+... +..
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~   87 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKC   87 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTT
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccc
Confidence            3689999999999999999999999999642            236888999999998 89999999999998752 221


Q ss_pred             hHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..     .+++.|. .++.++++.+|..++++|+.+....+....     ..++.++..+ .+.++.++..++++|..+.
T Consensus        88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred             ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence            11     1234444 246778999999999999999744332211     2467788888 7889999999999999876


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..          ..++.|+.++.++++.++..++++|+.+....+         ..++.|...+.++++.+|..++.+|+
T Consensus       157 ~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          157 DK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            42          478999999999999999999999999853332         34678889999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKE  346 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~  346 (488)
                      .+..           ...++.|...++++ +  +|..|+++|+.+..  +         .+++.|..++.+. ++++...
T Consensus       218 ~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~  272 (280)
T 1oyz_A          218 YRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITS  272 (280)
T ss_dssp             HTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred             HhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHH
Confidence            9862           24678889999776 4  88999999998853  2         4788999999764 6778887


Q ss_pred             HHHHHH
Q 011316          347 AAWAIS  352 (488)
Q Consensus       347 a~~aL~  352 (488)
                      +..+|.
T Consensus       273 ~~~~l~  278 (280)
T 1oyz_A          273 AIDKLK  278 (280)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            777764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.66  E-value=1.3e-14  Score=154.39  Aligned_cols=402  Identities=12%  Similarity=0.134  Sum_probs=267.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-  109 (488)
                      .++.+.+.+.+.+...|..|+.++..++............ ..+++.+++.+.+++ +.+|..++++++.++....... 
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence            3455566667888999999999999987653212222222 257889999999988 9999999999999986221100 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-----chhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHH
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTL  183 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~v~~~a~~~L  183 (488)
                      ..-.-..+++.++..+.++ +.++..+++++.+++...     ......+  ...++.++..+.. +.++.++..++.++
T Consensus       448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            0000113577888888775 999999999999987531     1121222  1245667777732 33478999999999


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316          184 SNFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      ..++...+.........+++.++..+...               ...++..++.++..++...+........ .+++.+.
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence            99988764443444556777777776531               3457788999999888654432222222 5677788


Q ss_pred             HhcCCCCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316          249 ELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       249 ~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      ..+.+.+. .++..++.+++.++..........+. .+++.+...++++ ++.+|..++.+++.++....+...... ..
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~  680 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA  680 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence            88877766 89999999999998754443333333 4788888888776 888999999999999874333333333 24


Q ss_pred             ChHHHHHHHhcCC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC-----------HHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-----------PRIVTVCLEGL  394 (488)
Q Consensus       328 ~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~-----------~~v~~~al~~L  394 (488)
                      +++.+++.+.+++  .++|..++.+++.++.........++-  .+++.+.+.++...           ..++..+++++
T Consensus       681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~  758 (861)
T 2bpt_A          681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence            7888888888764  889999999999998754434444443  36777777776431           35788888888


Q ss_pred             HHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC----CHHHHHHHHHHHHHhcC
Q 011316          395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD----NTEIYEKAVKILETYWV  453 (488)
Q Consensus       395 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~  453 (488)
                      ..++.......        ..+...+.  ..++.+.....+.    +..++..|..++..+..
T Consensus       759 ~~i~~~l~~~~--------~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          759 VGIVAGLHDKP--------EALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHHTTTCH--------HHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCH--------HHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            88875432100        00121121  1244555554442    78999999999988765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.65  E-value=8.2e-15  Score=148.91  Aligned_cols=362  Identities=14%  Similarity=0.098  Sum_probs=260.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      -.++.+.+.|+++++.++..|+++|.++...   +    +. ..+++.+.++|.+++ +.+|..|+.++.++....|+..
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---E----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---H----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---H----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence            3567788889999999999999999997531   1    22 356888999999998 9999999999999998666543


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhH
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSM  175 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~v  175 (488)
                      .     ++++.+..++.+.++.++..|+.+|..++..+++....+.  ..++.++..|.+              ..++-.
T Consensus       178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            2     5788888899999999999999999999977654322222  467778877743              247778


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316          176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      +..++.+|..++...+    .......+.+..++.      +.+..+...+++++..+... +.    +.. .++..|..
T Consensus       251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~  320 (618)
T 1w63_A          251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHH
Confidence            8889999999887542    112334455555543      23467889999999987542 11    222 45678888


Q ss_pred             hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011316          250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  329 (488)
Q Consensus       250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l  329 (488)
                      ++.++++.++..|+.+|+.++...+....     .....++..+.++ +..+|..|+.++..++....  ...     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence            89999999999999999999976543222     3566788899988 89999999999999987421  111     45


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011316          330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  409 (488)
Q Consensus       330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  409 (488)
                      +.|...+.+.+.+++..++.+++.++....+....      .++.|+++++.....+...++..+..++...+..+    
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~----  457 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH----  457 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH----
Confidence            77888888889999999999999999754323222      36777788877666666667777777776544321    


Q ss_pred             CCccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 011316          410 TGGVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILETYWV  453 (488)
Q Consensus       410 ~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~  453 (488)
                             ...      +..+..++.+  ..+.+...+.|++.+|-+
T Consensus       458 -------~~~------v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          458 -------AYT------VQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             -------HHH------HHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             -------HHH------HHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence                   111      2233333321  234455678999999864

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.65  E-value=1.8e-14  Score=153.44  Aligned_cols=356  Identities=14%  Similarity=0.220  Sum_probs=247.0

Q ss_pred             ccHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhc
Q 011316           30 ESLPAMVAGVWS-------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA  102 (488)
Q Consensus        30 ~~i~~l~~~L~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~  102 (488)
                      ..+|.++..|..       ++..++..+..+|..++...+....     ..+++.+.+.+.+++ ..+|..|+++++.++
T Consensus       324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~  397 (861)
T 2bpt_A          324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIM  397 (861)
T ss_dssp             HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence            567788888874       2357888999999887764321111     235677777888888 799999999999999


Q ss_pred             CCCc-hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh---HHHHHhcCChHHHHHHhcccccHhHHHH
Q 011316          103 SGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEHAKLSMLRN  178 (488)
Q Consensus       103 ~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~v~~~  178 (488)
                      .... +.....+. .+++.++..+.++++.+|..++++++.++......   ...+  ...++.++..+ .+. +.++..
T Consensus       398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~  472 (861)
T 2bpt_A          398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGL-QDH-PKVATN  472 (861)
T ss_dssp             SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHH
T ss_pred             cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHH
Confidence            8543 32222222 47888999999999999999999999997532110   0011  12466777777 343 889999


Q ss_pred             HHHHHHHhhcCCC----CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316          179 ATWTLSNFCRGKP----QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  252 (488)
Q Consensus       179 a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  252 (488)
                      +++++.+++....    .........+++.+...+.+.+  +.++..++.+++.++...+......+. .+++.++..+.
T Consensus       473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~  551 (861)
T 2bpt_A          473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG  551 (861)
T ss_dssp             HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence            9999999987532    2222345677888888888543  789999999999998665544333333 35555555553


Q ss_pred             C---------------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh-hHHHHHHHHHHHHhcCC
Q 011316          253 H---------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGN  316 (488)
Q Consensus       253 ~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~  316 (488)
                      .               ....++..++.++..++...+.......+ .+++.+...+++. +. .++..++.+++.++...
T Consensus       552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence            2               13457778999999998765543222222 5677788888777 56 89999999999998632


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHH
Q 011316          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGL  394 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--~~v~~~al~~L  394 (488)
                      .......+. .+++.+...+.++++.++..++.++..++.........++.  .+++.+.+.+.+++  ++++..++.++
T Consensus       630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            222222232 37889999998888899999999999998655433333322  46777778777654  78999999999


Q ss_pred             HHHHHhhh
Q 011316          395 ENILKAGE  402 (488)
Q Consensus       395 ~~l~~~~~  402 (488)
                      ..++....
T Consensus       707 ~~l~~~~~  714 (861)
T 2bpt_A          707 GDIASNIG  714 (861)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHhh
Confidence            99987643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.63  E-value=3.6e-14  Score=151.42  Aligned_cols=399  Identities=16%  Similarity=0.177  Sum_probs=252.8

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316           30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      ..++.+.+.+.++  +..+|..|++++..++..-............+++.+.+.+.+++ +++|..++.+|..++...++
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHH
Confidence            4566677778776  68999999999999875421000001111235777788887777 89999999999999975555


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch------------------hHHHH--HhcCChHHHHHHh
Q 011316          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------------CRDLV--LSNGALMPLLAQF  167 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~i~~l~~~l  167 (488)
                      .....+...+++.++..+.+.++.++..++..+..++.....                  .....  .-...++.++..+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            444444457888888888888999999999999888743110                  00000  0012455666666


Q ss_pred             cc------cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHH
Q 011316          168 NE------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE  240 (488)
Q Consensus       168 ~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~  240 (488)
                      .+      +.+..++..+..++..++...+.   .....+++.+...+.++++.++..++++++.++.... +...... 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            32      23457888999999888765431   2345677888888888999999999999999997654 3333333 


Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh--HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH-
Q 011316          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-  317 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-  317 (488)
                      ..+++.++..+.++++.+|..|++++++++...+...  ...+ ..+++.++..+.++  +.++..+++++.+++.... 
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~  483 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYE  483 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhh
Confidence            3578999999999999999999999999997544321  1111 24667777877663  7789999999999885311 


Q ss_pred             -------------HHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHH--------------------------------
Q 011316          318 -------------NQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAW--------------------------------  349 (488)
Q Consensus       318 -------------~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~--------------------------------  349 (488)
                                   +.....+ ..+++.|+..+...   +..++..+..                                
T Consensus       484 ~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  562 (876)
T 1qgr_A          484 AADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL  562 (876)
T ss_dssp             TTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence                         0011111 12455555555432   2234444444                                


Q ss_pred             ------------------------HHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhh
Q 011316          350 ------------------------AISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       350 ------------------------aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~  402 (488)
                                              ++..++...+ .....++  ..+++.+..++++..  +.++..++.++..++....
T Consensus       563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~  640 (876)
T 1qgr_A          563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG  640 (876)
T ss_dssp             TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence                                    4444443332 2222221  125667777777654  4788899999999986533


Q ss_pred             hhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 011316          403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW  452 (488)
Q Consensus       403 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~  452 (488)
                      ..-        .+|...     .++.+...+.+. +++++..|...+..+.
T Consensus       641 ~~~--------~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          641 GEF--------LKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             GGG--------GGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hhH--------HHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            211        112222     245555555544 7788877777665543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.62  E-value=1.1e-14  Score=143.55  Aligned_cols=391  Identities=12%  Similarity=0.108  Sum_probs=268.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      +..++..+.+++..+|..|-..|.++....         ..+++..|..++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            445777788999999999999998854311         1246677778887652 489999999999998763311110


Q ss_pred             H--------H---HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHH
Q 011316          111 V--------V---IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLR  177 (488)
Q Consensus       111 ~--------~---~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~v~~  177 (488)
                      .        +   ....+-..++..+.++++.+ ..++.+++.++...... .  .-.+.++.++..+ .+.  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0        0   01123456777788877778 88999999987532110 0  0124677788888 555  889999


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCC
Q 011316          178 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH  253 (488)
Q Consensus       178 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~  253 (488)
                      .++.+|..++... +.........+++.+...+.++  +..++..+++++.++...-.+... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999998753 2222334467888899999887  789999999999987643221110 01111246667777788


Q ss_pred             CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH---------------
Q 011316          254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN---------------  318 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---------------  318 (488)
                      +++.++..++.++..++...+......+...+++.++..+++. ++.++..|+..+..++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8899999999999999976554333333326777788888777 889999999999888753110               


Q ss_pred             ------HHHHHHHcCChHHHHHHHhcC-------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316          319 ------QIQAIIEAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       319 ------~~~~l~~~~~l~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  385 (488)
                            ...... ..++|.++..+...       ++.+|..|+.+|..++.........     .+++.+...+.++++.
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence                  011111 23577777777532       4578999999999998654322222     3577888889999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      ++..++.+++.+........          +...+  ...++.+...+.++++.|+..|.+.+.++...-
T Consensus       382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999875322110          01111  345788888899999999999999999987643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.61  E-value=7.6e-14  Score=141.80  Aligned_cols=383  Identities=13%  Similarity=0.113  Sum_probs=257.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+.+.|.+.++.+|..|+.++.++.... ++..     .++++.+..+|.+.+ +.++..|+.+|..++..+++..
T Consensus       142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~  214 (618)
T 1w63_A          142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDML  214 (618)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHH
Confidence            44788899999999999999999999998764 3322     267888899999888 9999999999999998655543


Q ss_pred             HHHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-----c
Q 011316          110 RVVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----E  169 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----~  169 (488)
                      ..+.  ..++.++..|.+               .++-.+...+.+|+.++..++...+     ...+.+..++.     +
T Consensus       215 ~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~  287 (618)
T 1w63_A          215 AHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSK  287 (618)
T ss_dssp             HHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSS
T ss_pred             HHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccccc
Confidence            3332  567777776642               4788899999999999877664322     23344444431     2


Q ss_pred             cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316          170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      +.+..+...+++++..+...     ......+++.+..++.+.++.++..++.+|..++...+..    +. .....++.
T Consensus       288 ~~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~  357 (618)
T 1w63_A          288 NVGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVD  357 (618)
T ss_dssp             THHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHH
Confidence            34567888888888886432     1223467788888899889999999999999998765432    22 45678888


Q ss_pred             hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC---H-HHHHHHH-
Q 011316          250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN---V-NQIQAII-  324 (488)
Q Consensus       250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~---~-~~~~~l~-  324 (488)
                      ++.+++..+|..|+.++..++....  ...     +++.+...+.+. +.++|..++.+++.++...   . .....++ 
T Consensus       358 ~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~  429 (618)
T 1w63_A          358 CLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHIDTIMR  429 (618)
T ss_dssp             GGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             HccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            8998899999999999999987432  222     346677777777 7889999999998888731   1 1111111 


Q ss_pred             --H-c------------------------CChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC-------------CHHH
Q 011316          325 --E-A------------------------GIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG-------------SNEQ  362 (488)
Q Consensus       325 --~-~------------------------~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~-------------~~~~  362 (488)
                        . .                        .++..|+..+.+.  ...+...++|+|+..+..-             .+. 
T Consensus       430 lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~-  508 (618)
T 1w63_A          430 VLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTED-  508 (618)
T ss_dssp             HHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHH-
T ss_pred             HHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHH-
Confidence              1 0                        1344455555542  2334445677776665210             111 


Q ss_pred             HHHHHHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011316          363 IKFLVSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI  440 (488)
Q Consensus       363 ~~~l~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v  440 (488)
                             .+++.|..+++  ..++.++..++.++.++....+..            ...+.     ..|..+..+.+.+|
T Consensus       509 -------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~------------~~~l~-----~~L~~~~~~~d~ev  564 (618)
T 1w63_A          509 -------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT------------VNRIK-----KVVSIYGSSIDVEL  564 (618)
T ss_dssp             -------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC------------HHHHH-----HHHHHHTTCSCHHH
T ss_pred             -------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch------------HHHHH-----HHHHHhcCCCCHHH
Confidence                   12445555554  467899999999999887665421            22222     33566678899999


Q ss_pred             HHHHHHHHHHhcCCCC----CCCCCCCCCCCCC
Q 011316          441 YEKAVKILETYWVEED----EDEPLPPGDATQA  469 (488)
Q Consensus       441 ~~~a~~~l~~~~~~~~----~~~~~~~~~~~~~  469 (488)
                      |++|...+.-+....+    --+++|+..+.+.
T Consensus       565 rdRA~~y~~ll~~~~~~~~~vl~~~P~~~~~~~  597 (618)
T 1w63_A          565 QQRAVEYNALFKKYDHMRSALLERMPVMEKVTT  597 (618)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHSCCCCCCC---
T ss_pred             HHHHHHHHHHHcCcHHHHHHHhhcCCCCCcccc
Confidence            9999988776543211    1134777665433

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.60  E-value=1.2e-13  Score=152.31  Aligned_cols=407  Identities=12%  Similarity=0.138  Sum_probs=271.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.++..+.+.|+++|..|...|.+.+..... ..+.-....+++.+++.|.+++ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            477899999999999999999999987654311 1111112346788889998887 899999999999999754431  


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH-----HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                      .+  ..+++.++..+.++++.+|..++.+|+.++...+...     ..-.-...++.++..+.++.+..++..++.++..
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            11  1357888888888888999999999999875433210     0011123677888888435778999999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHH
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~  264 (488)
                      ++...+..-......+++.+...+.+++..++..++.+++.++...++.   ++ ..+++.++..+.+. ++.++..++.
T Consensus       161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence            9864422222345778888889999999999999999999999765432   22 24577777777543 3578888999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-------
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-------  337 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-------  337 (488)
                      +++.++...+......+ ..+++.++..+.+. ++.+|..++.++..++...++.....+. .+++.+++.+.       
T Consensus       237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~  313 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY  313 (1230)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence            99999875443222222 36889999999887 8899999999999988732221111111 13333333221       


Q ss_pred             ------------------------------cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHH
Q 011316          338 ------------------------------NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  387 (488)
Q Consensus       338 ------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~  387 (488)
                                                    +..+.+|..|+.++..++.........+ . ..+++.+...+.+.++.++
T Consensus       314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~-~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-Y-KTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-H-TTTHHHHHSTTSCSSSHHH
T ss_pred             cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-H-HHHHHHHHHHcCCCchHHH
Confidence                                          1124679999999999987443212222 2 3578888888988899999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCC-------CCcc-chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          388 TVCLEGLENILKAGEAEKNMGN-------TGGV-NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~-------~~~~-~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ..++.++..++...........       .++. ..+...+  ...++.+...+.+++..++..+...+..+...
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            9999999888764321000000       0000 0001111  12355566667888889988888888776654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.59  E-value=8.9e-14  Score=148.35  Aligned_cols=407  Identities=14%  Similarity=0.148  Sum_probs=261.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-  109 (488)
                      .++.+...+.++++.+|..|++++..++.....+...... ..+++.++..+++++ +.+|..|++++++++...+... 
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            4555666777889999999999999987654212222222 458999999999988 9999999999999997433210 


Q ss_pred             -HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc---------------hhHHHHHhcCChHHHHHHhccc--c
Q 011316          110 -RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---------------KCRDLVLSNGALMPLLAQFNEH--A  171 (488)
Q Consensus       110 -~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~--~  171 (488)
                       ... -..+++.++..+.++ +.++..++++|.+++....               .....+  ...++.++..+...  .
T Consensus       445 ~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          445 NDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             STTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             cHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence             001 114567788888774 8999999999999974311               011111  12456666666432  2


Q ss_pred             cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----------C-C----hhHHHHHHHHHHHhccCCc-hhH
Q 011316          172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------N-D----DEVLTDACWALSYLSDGTN-DKI  235 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~----------~-~----~~v~~~al~~L~~l~~~~~-~~~  235 (488)
                      +..++..+..++..++..............++.++..+..          . +    +.++..++.++..++.... ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            4578888999999988876544444556777777766652          1 2    4567888999999887655 333


Q ss_pred             HHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316          236 QAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      .... ..+++.++.++++..  +.++..++.+++.++..........++ .+++.+...+.+..++.+|..|+++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3222 257788888888764  478999999999998754333332233 367788888876546789999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC--------
Q 011316          314 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--------  383 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--------  383 (488)
                      ........... ..+++.++..+.+  .+.+++..+++++++++.....+...++-  .+++.+.+.++.+.        
T Consensus       679 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~--~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE--VVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHhccCCCCChHHH
Confidence            73222223323 2478888888887  36789999999999997633223322221  35666666665432        


Q ss_pred             ---HHHHHHHHHHHHHHHHhhhhhhc--cCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 011316          384 ---PRIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWV  453 (488)
Q Consensus       384 ---~~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~  453 (488)
                         ..++..++.++..++........  ..+.....+|...+     +..+..+..++  +..++..|..++..+..
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence               26788888888888765321100  00000011122222     34445554555  78999999998887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.57  E-value=1.7e-14  Score=142.18  Aligned_cols=360  Identities=14%  Similarity=0.120  Sum_probs=242.3

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCcc----------HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011316           31 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPP----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL   98 (488)
Q Consensus        31 ~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L   98 (488)
                      .+..++..+.++  ++.+|..|+..|.+++.......          ...-....+-..++..|.+++ +.+ ..++.++
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            344566666654  68999999999999876431000          001112234456777888877 678 8899999


Q ss_pred             HHhcCCC-chhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc-cH
Q 011316           99 TNIASGT-SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA-KL  173 (488)
Q Consensus        99 ~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-~~  173 (488)
                      +.++... ++.    .-.++++.|+..+.++  ++.+++.++.+|+.++... +....... ...++.++..+.... +.
T Consensus       114 ~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~  188 (462)
T 1ibr_B          114 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN  188 (462)
T ss_dssp             HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence            9998732 210    1136789999999887  8999999999999998643 21111111 125667777774332 78


Q ss_pred             hHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011316          174 SMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  251 (488)
                      .++..++.++.++.....  .........+++.+...+.+++..++..+++++..++...+......+..++++.++..+
T Consensus       189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (462)
T 1ibr_B          189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764321  001111123466777777888999999999999999865544322222225667777778


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCch-----------------hhHHHhh---CCChHHHHHHhccc------chhhHHHHH
Q 011316          252 RHPSPSVLIPALRTVGNIVTGDDM-----------------QTQCIIN---HQALPCLLDLLTQN------YKKSIKKEA  305 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~~~~---~~~~~~L~~lL~~~------~~~~v~~~a  305 (488)
                      .+.++.++..++..+..++.....                 ....+++   ..+++.++..+...      .++.+|..|
T Consensus       269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence            888899999999999888763200                 0000111   23556666666432      145789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  385 (488)
                      +.+|..++...++   .++ ..+++.+...+.+.++.+|..|+.+++.++....++...... ..+++.+...+.++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence            9999999873222   122 236778888888889999999999999999765422111111 35788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 011316          386 IVTVCLEGLENILKAGE  402 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~  402 (488)
                      ++..|+++|.++.....
T Consensus       424 Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999987654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.56  E-value=1.8e-13  Score=151.06  Aligned_cols=399  Identities=12%  Similarity=0.142  Sum_probs=262.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASG  104 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~  104 (488)
                      ..++.++..+.++++.+|..|+.+|..++.......    ...-....++|.|++.+.+ ++ +.++..|+.++..++..
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence            345667777777777788888888887765442210    0111234578999999984 66 89999999999999852


Q ss_pred             CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011316          105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~  184 (488)
                      .++..... -..+++.+...+.++++.+|..|+.+++.++...+.   .+ -...++.++..+....+..++..++.++.
T Consensus       165 ~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          165 QGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             TCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             hHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            22111000 123567777888888999999999999999876442   11 12357778877754444567778888888


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----------
Q 011316          185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----------  253 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----------  253 (488)
                      .++...+..-......+++.+...+.+.++.++..++.++..++...+........ .+++.++..+..           
T Consensus       240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~  318 (1230)
T 1u6g_C          240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDE  318 (1230)
T ss_dssp             HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCccccc
Confidence            88875433222345789999999999889999999999999988654433222222 344555444421           


Q ss_pred             --------------------------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011316          254 --------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       254 --------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                                                ..+.+|..|+.++..++...+......+ ..+++.++..+.+. ++.+|..++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~  396 (1230)
T 1u6g_C          319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFH  396 (1230)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHH
T ss_pred             ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHH
Confidence                                      1235688899999998875543333333 35778888888777 8899999999


Q ss_pred             HHHHHhcC--C-----------------HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316          308 TISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       308 ~L~nl~~~--~-----------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++..+...  .                 .......+ ..+++.+...++++++.+|..++.+|+.++.........++  
T Consensus       397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--  473 (1230)
T 1u6g_C          397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--  473 (1230)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--
T ss_pred             HHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--
Confidence            88877651  1                 11112222 23677777778888999999999999998765321111121  


Q ss_pred             CCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 011316          369 QGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK  446 (488)
Q Consensus       369 ~~~~~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~  446 (488)
                      ..+++.+...++++.+  .++..++..+..++.......          +...+.  ..++.+.....+++..++..|..
T Consensus       474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~~~l~--~llp~L~~~l~d~~~~v~~~al~  541 (1230)
T 1u6g_C          474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FHPHVQ--ALVPPVVACVGDPFYKITSEALL  541 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GHHHHT--TTHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----------HHhHHH--HHHHHHHHHHcccchHHHHHHHH
Confidence            1357788888887654  888888888888875322110          233332  34666777777788888777777


Q ss_pred             HHHHhc
Q 011316          447 ILETYW  452 (488)
Q Consensus       447 ~l~~~~  452 (488)
                      .+..+.
T Consensus       542 ~l~~l~  547 (1230)
T 1u6g_C          542 VTQQLV  547 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776555

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.46  E-value=4.2e-12  Score=110.77  Aligned_cols=188  Identities=20%  Similarity=0.198  Sum_probs=157.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.|++.|.++++.+|..|+..|..+..            .+.++.|+++|.+++ +.+|..|+++|+.+..      
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            779999999999999999999999998532            257899999999988 9999999999999864      


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                           .+.++.|+..+.++++.+|..++++|+.+..  +         ..++.++..+ .++++.++..++++|..+.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 2468999999999999999999999999843  1         3578888888 88899999999999999853 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                               ...++.+..++.++++.++..++.+|+.+..           ...++.|..++.++++.+|..|..+|.++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     3578999999999999999999999999843           14567788888889999999999999998


Q ss_pred             hcCCc
Q 011316          270 VTGDD  274 (488)
Q Consensus       270 ~~~~~  274 (488)
                      ...+.
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            76543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.44  E-value=6.3e-12  Score=108.73  Aligned_cols=184  Identities=20%  Similarity=0.204  Sum_probs=157.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +..+.+++.|.++++.+|..|++.|..+..            ...++.|+++|.+++ +.+|..|+++|+.+..      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            677899999999999999999999998542            246889999999888 9999999999999864      


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                           ...++.|+..+.++++.+|..++++|+.+..  +         ..++.++..+ .+.++.++..++++|..+.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 2468999999999999999999999999842  1         2577888888 78899999999999999853 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                               ...++.+..++.++++.++..++.+|+.+..           ...++.|..++.++++.++..|..+|..+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                     3688999999999999999999999999832           13567788888888999999999999886


Q ss_pred             h
Q 011316          270 V  270 (488)
Q Consensus       270 ~  270 (488)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.43  E-value=2e-11  Score=105.51  Aligned_cols=184  Identities=20%  Similarity=0.238  Sum_probs=157.7

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011316          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  195 (488)
Q Consensus       116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  195 (488)
                      +..+.++..|+++++.+|..|++.|+.+..           ...++.++..+ .+.++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457899999999999999999999998753           13578889999 78899999999999998753       


Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316          196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       196 ~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                         ...++.+..++.++++.++..++++|+.+..           ...++.|..++.++++.++..++++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2578999999999999999999999998753           1467888999999999999999999999853    


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .++         .++.|..++.++++.++..|..+|..+-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999983  233         5778888899999999999999999875

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=8.3e-12  Score=108.90  Aligned_cols=187  Identities=21%  Similarity=0.216  Sum_probs=157.8

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (488)
                      .+.++.|+++|++++ +.+|..|++.|+.+..           .+.++.|+.++.++++.+|..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            467899999999988 9999999999998864           2568999999999999999999999999852      


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                           .+.++.++..+ .+.++.++..++++|..+..          ...++.+..++.++++.++..++.+|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 13577888888 78899999999999999854          3578999999999999999999999999843  


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                               ...++.|..++.++++.++..++.+|+.+..           ...++.|..+++++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     1467889999999999999999999999853           13567788889888 89999999999999


Q ss_pred             HhcC
Q 011316          312 ITAG  315 (488)
Q Consensus       312 l~~~  315 (488)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.41  E-value=1.9e-11  Score=123.77  Aligned_cols=367  Identities=11%  Similarity=0.094  Sum_probs=243.8

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh--cCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL--SRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .++.+.+.|+++++.++-.|++++.++..   .+    +. ..+++.+.++|  .+.+ +.+|..|+.++.++...+|+.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS---RE----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            46678888899999999999999999743   12    22 24678888999  7778 999999999999999855543


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------cc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E--H----------AK  172 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~  172 (488)
                      ..   ..+.++.+..+|.+.++.++..|+.++..++..++..   +  ...++.+++.|.    .  .          .+
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   2488999999999999999999999999998766531   1  122333443331    1  1          15


Q ss_pred             HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCCchhHHHHHHh
Q 011316          173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA  241 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll---------~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~  241 (488)
                      +-.+...+..+..++..............+..++..+         ++.+  ..+...+..++..+.. .+.    +.. 
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~----~~~-  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN----LLV-  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH----HHH-
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHH----HHH-
Confidence            6677788887777764321111111222333333322         1122  3788888888888863 222    222 


Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      .++..|..++.+.++.++..++..|..++...+. . ..+. .....++..+. ++ +..+|..++.++..++.  +.+.
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~~-~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAVK-THIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHHH-TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHHH-HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            4567788889888999999999999999986542 1 1222 45677888888 77 89999999999999974  3444


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      ..     ++..|...+...+.+++..++.+++.++..-.+...      -.+..|.+++......+...+...+..++..
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~  471 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN  471 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence            33     456688888888999999999999998743211111      1366677777655544555556666666654


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011316          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~  454 (488)
                      .+..            +...     +..+.+...++  ...+...+.|++.+|-+.
T Consensus       472 ~~~~------------~~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~  510 (621)
T 2vgl_A          472 RDDV------------QGYA-----AKTVFEALQAPACHENLVKVGGYILGEFGNL  510 (621)
T ss_dssp             GCSC------------HHHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHH
T ss_pred             ChhH------------HHHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHHH
Confidence            4322            1111     22233333332  345667788999988653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.36  E-value=3e-10  Score=114.96  Aligned_cols=332  Identities=13%  Similarity=0.109  Sum_probs=234.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      +.+.+++.+.+++...+..+.-++..++... .+..   .  =++..+.+-|++++ +.++..|+++++++..  ++...
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~---~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELI---R--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHH---H--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHH---H--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            4566888999999999888888888866543 2211   1  14567778888888 9999999999999964  55444


Q ss_pred             HHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                           .+++.+.+++  .+.++.+|..|+.++..+....|+.   +...+.++.+.++| .+.|+.++..|+.++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence                 3468888999  8899999999999999998766542   22236788888888 78899999999999999987


Q ss_pred             CCCCCChhhhhchHHHHHHhhccC-------------ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcC-C
Q 011316          189 GKPQPLFEQTRPALPALERLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLR-H  253 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~-------------~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-~  253 (488)
                      ..+..-.......+..+.+++..+             ++-.+...+..+..++... +.....+.  +.+..++..+. .
T Consensus       217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~  294 (621)
T 2vgl_A          217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP  294 (621)
T ss_dssp             HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred             hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence            653211112233334444444322             5788999999999988643 23323222  23344443321 1


Q ss_pred             C--------C--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011316          254 P--------S--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       254 ~--------~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                      +        +  ..+...+..++..+.. +++...     .++..|..++.++ ++.+|..|+..+..++...+. . ..
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~  365 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA  365 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence            1        2  2677788888888753 222222     3566788888888 889999999999999885432 1 12


Q ss_pred             HHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          324 IEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       324 ~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      + ....+.++.++. ++|..++..++..|..++.   ......     ++..|...+...+.+++..++.++..+...
T Consensus       366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            2 246778888888 8899999999999999974   344444     466677777778899999999888888654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.12  E-value=5.5e-09  Score=96.47  Aligned_cols=279  Identities=14%  Similarity=0.071  Sum_probs=165.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.++++++++|..++...--.+..++.. +.+..      =++..|.+=+++++ +-+|..|+++++++..  ++..
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence            3455678899999999998888888776554 23322      25678888899999 9999999999999986  4443


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      +.     +.+.+.+.+.+.++-+|..|+.+...+....|+..    + +.+..+-+++ .+.++.++.+|+.++..+...
T Consensus       138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence            33     35778888999999999999999999998877632    2 5788888888 778899999999999999875


Q ss_pred             CCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316          190 KPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +        ...+..++..+...   ++-.+...++.+..++..+ +..     ...+++.+..+|++.++.|...|+.+
T Consensus       207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred             c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3        22444555555432   4666666666666666554 222     23677888888999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      +..+.......    . ..++..+..++.++ ++.+|..|+..|..++...++..+.     .-..+.+++.+++..+..
T Consensus       274 I~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred             HHhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            99986522221    1 23456677788888 8899999999999998876664432     334466778888877776


Q ss_pred             HHHHHHHH
Q 011316          346 EAAWAISN  353 (488)
Q Consensus       346 ~a~~aL~~  353 (488)
                      .|+.+|..
T Consensus       343 ~Aittllk  350 (355)
T 3tjz_B          343 LAITTLLK  350 (355)
T ss_dssp             --------
T ss_pred             HHHHHhhh
Confidence            66666544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.12  E-value=1.1e-08  Score=81.96  Aligned_cols=218  Identities=13%  Similarity=0.168  Sum_probs=175.1

Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  193 (488)
Q Consensus       114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  193 (488)
                      +..++..++.+|.++-..++.+|+..+..++...|+..+.+     +..|+.++..+...........+++.++.-.   
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---  101 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---  101 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence            44578899999999999999999999999998888754443     4567777777778888788888899888654   


Q ss_pred             ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                       .....+.+|.+..-.+-++++++.....+|..++..++....     +++.-+..++.+++..-+..|+..++.+....
T Consensus       102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence             245678888888888889999999999999999988876554     55677889999988888888888888887644


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  353 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~  353 (488)
                      .....     -.++.+..+|.+. +.-+|..|.-+|.+++..++..+..+.      .-+.-+++.+..++.....+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence            43322     4789999999999 999999999999999998888554333      23555677788899999999988


Q ss_pred             hccC
Q 011316          354 ATSG  357 (488)
Q Consensus       354 l~~~  357 (488)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.11  E-value=7.2e-09  Score=106.23  Aligned_cols=275  Identities=15%  Similarity=0.135  Sum_probs=196.1

Q ss_pred             ccHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHH
Q 011316           30 ESLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALT   99 (488)
Q Consensus        30 ~~i~~l~~~L~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-------~~~v~~~a~~~L~   99 (488)
                      +++..|-+.|.   ++++.++.-|+..|.-+-++...         .++..|...|.+++       .+.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            45666777776   67889999999999987765421         14567777776543       3678989999999


Q ss_pred             HhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011316          100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  179 (488)
Q Consensus       100 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a  179 (488)
                      .+..++..  .     .+++.|...+.+++..+++.|+.+|+.+..++...       .++..|+..+..+.+..+++.+
T Consensus       463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHH
Confidence            98764321  1     24678888888877888889999999875443321       1356677766566678899999


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcc
Q 011316          180 TWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPS  257 (488)
Q Consensus       180 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~  257 (488)
                      +.+|..+..+.        ...++.+++.|. +.++-++..++.+++.-..+..+.       ..++.|+..+ .+.+..
T Consensus       529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99999887654        345667777776 468888888888777544433322       2234344333 456778


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      +|..|+..|+.+..++++         .++.++.+|.+..++.+|..|+++++.++.+++..       .++..|..+.+
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~  657 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHcc
Confidence            999999999998876652         34566665544449999999999999998854421       25677888888


Q ss_pred             cCChhHHHHHHHHHHHhccCC
Q 011316          338 NAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      +.+..|+..|+.+|+.+....
T Consensus       658 D~d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          658 DPVDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             CSSHHHHHHHHHHHHHHSTTC
T ss_pred             CCCHHHHHHHHHHHHHHhcCC
Confidence            899999999999999998654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.05  E-value=1.5e-08  Score=84.86  Aligned_cols=226  Identities=17%  Similarity=0.175  Sum_probs=172.3

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      .+.+..+.++++..|+.++..++.+|..+....++......-..+++.++.++.++++.+...|+.+|..+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45777899999999999999999999999977544444444448899999999999999999999999999987654333


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      .+.  .+...+..++.++ ++-.+.+|+-.++-+--.+..       .+++..+.+++.+.+..++..++.++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            332  3567788889988 999999999999988432211       126778889998889999999999999998754


Q ss_pred             C-HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCC
Q 011316          359 S-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHD  436 (488)
Q Consensus       359 ~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~  436 (488)
                      . ++.     -.+++.-+-.++++.|+.+++.|+.++..++.+.-...         . ...+  .+.......+. -..
T Consensus       182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~---------~-~~~~--~~~~~~v~~l~~~~~  244 (265)
T 3b2a_A          182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN---------V-KIEL--LKISRIVDGLVYREG  244 (265)
T ss_dssp             SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC---------C-HHHH--HHHHHHHHHGGGCSS
T ss_pred             CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh---------H-HHHH--HHHHHHHHHHHHhcC
Confidence            2 111     12567778889999999999999999999987743221         1 2222  23355666676 667


Q ss_pred             CHHHHHHHHHHHHHh
Q 011316          437 NTEIYEKAVKILETY  451 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~  451 (488)
                      .|.++.+|..+.+.+
T Consensus       245 ~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          245 APIIRLKAKKVSDLI  259 (265)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            899999998877654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.01  E-value=5.2e-09  Score=107.35  Aligned_cols=220  Identities=15%  Similarity=0.122  Sum_probs=155.6

Q ss_pred             HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCC-
Q 011316           69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD-  146 (488)
Q Consensus        69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~-  146 (488)
                      ..+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..++ .+|.+++.++|..|+++|.||+.+ 
T Consensus        31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            33445555 556789998 8999999999999998 888999999888888765 478889999999999999999864 


Q ss_pred             CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316          147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       147 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  226 (488)
                      .+.....+.+.|++++|..++. ...        ..+........... ......+           ..+...++.+|.+
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~-~~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~  166 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAK-AVL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGL  166 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHH-HHH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHH-hhH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHH
Confidence            4567788889999999999883 211        11222111110000 0001111           2344567778888


Q ss_pred             hccCCchhHHHHHHhCCHHHHHHhcCCC---CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhH
Q 011316          227 LSDGTNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSI  301 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v  301 (488)
                      ++..+.+....+...+.++.++..|.+.   ..+++..|+.+|..++..++...+.+.+.+....+..++  ... +...
T Consensus       167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~  245 (684)
T 4gmo_A          167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPR  245 (684)
T ss_dssp             HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTT
T ss_pred             HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHH
Confidence            8877777777788888899998888442   357999999999999999998888887765443332222  223 3445


Q ss_pred             HHHHHHHHHHHh
Q 011316          302 KKEACWTISNIT  313 (488)
Q Consensus       302 ~~~a~~~L~nl~  313 (488)
                      +..+++++.|+.
T Consensus       246 ~~la~giL~Ni~  257 (684)
T 4gmo_A          246 AVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHh
Confidence            778889998874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.93  E-value=1.5e-07  Score=75.50  Aligned_cols=220  Identities=13%  Similarity=0.195  Sum_probs=169.1

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhh
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQT  277 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~  277 (488)
                      ..++..++.+|.++-+.++.+|+..+.+++...++....+     +..|+.+++ ++.-........+++.++..+|+..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            5678889999998889999999999999999888776643     345666654 4455666788899999998888666


Q ss_pred             HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316          278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                      .     ++++.+..-..-+ ++++|....++|..++..+|....     +++..+..++.+++..=|..|+..++.+..+
T Consensus       106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            5     4567777777788 999999999999999998888554     3566788899988887788888888888765


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC
Q 011316          358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN  437 (488)
Q Consensus       358 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~  437 (488)
                      +    .++.  ...++.|..+|.+.|.-++..+.++|.++....++.            +..+.     +++.+ +++.+
T Consensus       175 ~----~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl------------Rkii~-----~kl~e-~~D~S  230 (253)
T 2db0_A          175 S----FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL------------RKVVI-----KRLEE-LNDTS  230 (253)
T ss_dssp             T----HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH------------HHHHH-----HHHHH-CCCSC
T ss_pred             C----cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH------------HHHHH-----HHHHH-hcCcH
Confidence            4    2232  247999999999999999999999999999887753            33332     33444 46677


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q 011316          438 TEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       438 ~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      ..|+.+...-+.++.-.|.++
T Consensus       231 ~lv~~~V~egL~rl~l~e~~~  251 (253)
T 2db0_A          231 SLVNKTVKEGISRLLLLEGHS  251 (253)
T ss_dssp             HHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            889988888888876655543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.90  E-value=1.3e-08  Score=94.02  Aligned_cols=242  Identities=14%  Similarity=0.095  Sum_probs=139.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+..+.+.++++++-+|-.|++.|.++...   +..+     .+.+.+.+.|.+.+ +.+|..|+.+...+....|+..+
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v~  175 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVVK  175 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHHH
Confidence            367889999999999999999999998653   2233     34567888899999 99999999999999987777543


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhc
Q 011316          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~v~~~a~~~L~~l~~  188 (488)
                           ++++.+..++.+.++.++.+|+.+|..+...+..         .+..++..+.++.  ++-.+...+..+..++.
T Consensus       176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~  241 (355)
T 3tjz_B          176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE  241 (355)
T ss_dssp             -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred             -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence                 6789999999999999999999999999875432         3445555553321  34444444444434333


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+   ........++.+...+++.++.|...|++++..+......    .. ..++..+..++.++++.+|..|+..|..
T Consensus       242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~  313 (355)
T 3tjz_B          242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred             cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            32   1123356777888888999999999999999998653321    11 2456777778888999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      ++...+....     ..-.-+..+++++ +..+...|..+|
T Consensus       314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl  348 (355)
T 3tjz_B          314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL  348 (355)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence            9987765443     2334567778777 766666655544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.89  E-value=1.3e-07  Score=79.19  Aligned_cols=190  Identities=15%  Similarity=0.156  Sum_probs=153.5

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316           28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      .-+.+..+..+|..+|+.++.+++.+|.++++.. +...+...-..+++.+++++.+.+ +.+...|++|+..+..+.|-
T Consensus        31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           31 DKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCB
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCC
Confidence            3467888999999999999999999999999875 344555555678999999999999 99999999999999997665


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..+.+..  +..++...+.++++-++..++..++.+---.+.  ..     ++..+.+++ .+.|..++..++.++.+++
T Consensus       109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--KL-----VRTYINELV-VSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--HH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHG
T ss_pred             CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--HH-----HHHHHHHHH-hCCChhHHHHHHHHHHHhh
Confidence            5554443  468899999999999999999999999322221  12     356778888 8999999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      ......  .....++.-+-.+++++|+.++..|+.++-.+....
T Consensus       179 ~~S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          179 NSSADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             GGCSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cccCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            865222  234456667788999999999999999999988663

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.86  E-value=6.1e-07  Score=92.22  Aligned_cols=270  Identities=13%  Similarity=0.131  Sum_probs=186.5

Q ss_pred             CHHHHHHhhc---CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC--------HHHHHHHHHHHhh
Q 011316           74 VVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGN  142 (488)
Q Consensus        74 ~i~~L~~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~~~~~a~~~L~~  142 (488)
                      ++..|-+.|.   +++ +.++..|+.+|+.+..+...        .++..|...+.+++        +.++..|+..|+.
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4666666776   445 88999999999999884432        13677777776544        6788899999998


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHH
Q 011316          143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDAC  221 (488)
Q Consensus       143 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al  221 (488)
                      +..++..  +.     ++..|...+ .+.+..++..++.+|+.+..+..+      ..++..|+..+ .+.+..++..+.
T Consensus       464 a~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            7655421  11     355677777 444455667888888876443211      23455555554 355788999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316          222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ..|+.+....++..         +.+++.|. +.++.+|..++.+++.-..+....       ..++.|+..+.+..+..
T Consensus       530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99998876665443         44444443 467889999888887655544322       23455555554443788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011316          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  379 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll  379 (488)
                      +|+.|+.+|+.+..++++         .++.++..+ ++.++.+|..|+.+|+.+.......        .+++.|..+.
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence            999999999998876543         466666644 4569999999999999997543211        2466777888


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 011316          380 NCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       380 ~~~~~~v~~~al~~L~~l~~  399 (488)
                      ++++..|+..|+.+|..+..
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHST
T ss_pred             cCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999987753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.86  E-value=1e-06  Score=83.19  Aligned_cols=323  Identities=12%  Similarity=0.133  Sum_probs=197.4

Q ss_pred             hCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCChH-HHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          114 DHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       114 ~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~-~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +......++.+|.. .+.++.+..+..+..+...++   .....+.+..... .+........+.-....++.++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            34567888898875 789999999999999988776   3333333332221 233322233444455666666666654


Q ss_pred             CCCCCChhhhhchHH--HHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHh--CCHHHHHHhcC----CC-----
Q 011316          189 GKPQPLFEQTRPALP--ALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP-----  254 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~--~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~----~~-----  254 (488)
                      ..+. .......++.  .+...+++. +...+..++.++..+...+..+ ..+.+.  ..++.++.++.    +.     
T Consensus       155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            4322 2233344444  455556553 4555667888888888765433 445443  23555544322    11     


Q ss_pred             --------CcchHhHHHHHHhHhhcCCchhhHHHhhCCCh--HHHHHHhcccchhhHHHHHHHHHHHHhcCCH----HHH
Q 011316          255 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQI  320 (488)
Q Consensus       255 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~  320 (488)
                              ..+++..++.|++.++.. +.....+...++.  ..++.+++....+++-+-++.++.|+....+    ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                    245678899999999884 4455555555543  5667777776578999999999999998542    222


Q ss_pred             HH-HHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhcc---CCC--HHHHHH----------------HH--------
Q 011316          321 QA-IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS---GGS--NEQIKF----------------LV--------  367 (488)
Q Consensus       321 ~~-l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~---~~~--~~~~~~----------------l~--------  367 (488)
                      .. ++..++ +.++..|...   |+++....-.....+-.   .-+  .++...                +.        
T Consensus       312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            32 333344 4455666553   66554332222211110   000  011111                11        


Q ss_pred             H--CCChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011316          368 S--QGCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  435 (488)
Q Consensus       368 ~--~~~~~~L~~ll~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~  435 (488)
                      +  -.+++.|.++|++          .|+.+...|+.=++.+++.-+..            +..+.+.|+.+.+.+|++|
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g------------r~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES------------IDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH------------HHHHHHHSHHHHHHHHTSC
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch------------hHHHHHcCcHHHHHHHhcC
Confidence            1  1346788888873          36777888888888888776643            7788899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 011316          436 DNTEIYEKAVKILETYW  452 (488)
Q Consensus       436 ~~~~v~~~a~~~l~~~~  452 (488)
                      +|++|+..|..++.++.
T Consensus       459 ~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          459 SDSRVKYEALKATQAII  475 (480)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999988763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=2.5e-08  Score=88.66  Aligned_cols=187  Identities=14%  Similarity=0.218  Sum_probs=144.2

Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011316          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  239 (488)
Q Consensus       161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~  239 (488)
                      +.+.+.+ .+.+...|..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466777 778899999999999999876322111223577888999994 88999999999999999965433333333


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHH
Q 011316          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN  318 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  318 (488)
                      . .+++.++..+.++++.+|..+..++..++....  ..     .+++.+...+++. ++.+|..++..|..+... .++
T Consensus        97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence            3 678999999999999999999999999987433  11     3677888999988 999999999999997653 233


Q ss_pred             H-HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316          319 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       319 ~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      . ....+. .++|.|..++.+.++++|..|..+++.++..-
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            1 122222 48999999999999999999999999998543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.84  E-value=1.6e-08  Score=103.70  Aligned_cols=196  Identities=13%  Similarity=0.071  Sum_probs=147.4

Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH-HHhcCCCCcchHhHHHHHHhHhhcCC-chhh
Q 011316          200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLRHPSPSVLIPALRTVGNIVTGD-DMQT  277 (488)
Q Consensus       200 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~  277 (488)
                      .++| +++.|+++++..+..|+++|.+++.. +...+.+...+++..+ ..+|.+++.++|..|+++|.||+... ...+
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3445 55678999999999999999999974 4455667777888765 56788899999999999999999753 4567


Q ss_pred             HHHhhCCChHHHHHHhcccch--------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316          278 QCIINHQALPCLLDLLTQNYK--------------------KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~--------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      ..++..++++.|..+++....                    ..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            778899999999998854200                    123345778888998887888888888899999999886


Q ss_pred             cC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHH---HhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          338 NA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL---CDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       338 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L---~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      +.   ..+++..|+.+|.+++... .+....+.+.+....+   ..+.++.+ ..+..+++.|.+++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDN-LKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence            53   4579999999999998864 5667777776654333   22223333 345667788888864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=1.9e-08  Score=89.42  Aligned_cols=186  Identities=14%  Similarity=0.185  Sum_probs=140.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      +.+...+.+.+...|..++..|..++...+....... ...++.+...+.++.+..++..++.++..++..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4577788899999999999999999765322110000 123555666663378899999999999999965422223455


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC-ch-h
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DM-Q  276 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~-~  276 (488)
                      ..++|.++..+.+.+..++..+..++..++....  ..     .+++.+...+.+.++.+|..++..|+.+.... +. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7789999999999999999999999999987543  12     46788889999999999999999999966543 32 1


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ....+. .+++.+...+.++ ++.+|..|..+++.++.
T Consensus       170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            222333 6889999999988 99999999999999986

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.3e-07  Score=83.96  Aligned_cols=189  Identities=13%  Similarity=0.186  Sum_probs=140.2

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHH-hcCCCchhhHHHHh-CCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCC--chhH-
Q 011316           78 FIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR-  151 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~--~~~~-  151 (488)
                      +.+.+++.+ ...|..|+..|.. ++.+.++....-.+ ..++..|.+.+ .+.+..++..|+.+++.++.+-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            455678888 6889999999999 87644432200001 13467788888 6889999999999999998432  2232 


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      .....  .++.++..+ .+....++..+..++..++...+. ....  ...+++.+...+++.++.++..++.+|..++.
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            23222  578888888 667788999999999998875422 2222  56789999999999999999999999999986


Q ss_pred             CCc---hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          230 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       230 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ...   ......+...+++.+.+++.+.++.+|..|..+++.++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            544   222233424889999999999999999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.2e-07  Score=84.15  Aligned_cols=191  Identities=10%  Similarity=0.085  Sum_probs=141.3

Q ss_pred             HHHHhcccccHhHHHHHHHHHHH-hhcCCCCCC--hhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc-hhHH-
Q 011316          163 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  236 (488)
Q Consensus       163 l~~~l~~~~~~~v~~~a~~~L~~-l~~~~~~~~--~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~-~~~~-  236 (488)
                      +...+ .+.+..-|..++..|.. ++.+.+...  ......++..+.+.+ ++.+..++..++.+++.++..-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34455 67788899999999999 876532222  222346788888999 68899999999999999985432 2222 


Q ss_pred             HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316          237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      .... .+++.++..+.+..+.++..+..++..++...+.....-.-..+++.+...|+++ ++.+|..++.+|..++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2222 4789999999998899999999988888874422111000013677888999999 9999999999999998732


Q ss_pred             H---HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          317 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       317 ~---~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .   ......+...++|.|..++.+.+.+||..|..++..++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2   444444424699999999999999999999999999874

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.59  E-value=1.5e-05  Score=85.48  Aligned_cols=345  Identities=9%  Similarity=0.030  Sum_probs=198.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC------ch
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SE  107 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~------~~  107 (488)
                      .++..+.+++..+|...+.++..++..+-...     ..+.++.|++.+++++ +..+..++.++..++...      ++
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~-----Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~  162 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE  162 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence            46677766678999999999999887541111     2568899999998887 788899999999998722      12


Q ss_pred             hhHHHH--hCCCHHHHHH-------hhCCCCH---------HHHHHHHHHHhhhhC-CCchhHHHHHhcCChHHHHHHhc
Q 011316          108 NTRVVI--DHGAVPIFVR-------LLSSPTD---------DVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFN  168 (488)
Q Consensus       108 ~~~~~~--~~g~i~~L~~-------lL~~~~~---------~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~  168 (488)
                      .+..+.  -....+.++.       .+.+...         ++...++.++.++.. +.+..-..-+ ...++.+.+.+.
T Consensus       163 ~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~  241 (960)
T 1wa5_C          163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLS  241 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHc
Confidence            222110  0122333333       2443211         233346666666543 2232111000 012233344442


Q ss_pred             cc-----cc---------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhcc
Q 011316          169 EH-----AK---------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       169 ~~-----~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~al~~L~~l~~  229 (488)
                      ..     .+         ..++..++.++..+....+..-......+++.+...+.     ..+..++..++..+..++.
T Consensus       242 ~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~  321 (960)
T 1wa5_C          242 YSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR  321 (960)
T ss_dssp             CCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC
Confidence            10     11         24677888888887754422111234456666666664     2357888999999988875


Q ss_pred             CCchh--HH--HHHHhCCH-HHHHHhcC-----------------------CCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316          230 GTNDK--IQ--AVIEAGVC-PRLVELLR-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       230 ~~~~~--~~--~~~~~~~l-~~L~~lL~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      .....  .+  ..+. .++ +.++..+.                       +.....|..|..+|..++...+.   .++
T Consensus       322 ~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~  397 (960)
T 1wa5_C          322 IPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT  397 (960)
T ss_dssp             SHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH
T ss_pred             cHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH
Confidence            43211  00  1111 122 22222221                       11125677888888888775442   121


Q ss_pred             hCCChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCC---H---H------HHHHHHHcCChHHHHHHHhcC---C
Q 011316          282 NHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGN---V---N------QIQAIIEAGIIGPLVNLLLNA---E  340 (488)
Q Consensus       282 ~~~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~---~---~------~~~~l~~~~~l~~L~~ll~~~---~  340 (488)
                      . .+++.+...+.      +. ++..|..|+.+++.++.+.   .   .      ....++..-++|    .+.++   +
T Consensus       398 ~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~  471 (960)
T 1wa5_C          398 N-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPH  471 (960)
T ss_dssp             H-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSC
T ss_pred             H-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCC
Confidence            1 23445555555      44 7789999999999997531   1   0      122222212333    34555   7


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +.+|..|+|+++.++..-.++....     +++.+++.+.++++.|+..|+.+|.+++..
T Consensus       472 p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          472 IILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             ceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            8899999999999987654443333     577888888888899999999999999864

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.53  E-value=4.9e-05  Score=81.76  Aligned_cols=396  Identities=10%  Similarity=0.066  Sum_probs=206.2

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh-------hcCCCC--hhHHHHHHHHHHHhcCCCchhh---
Q 011316           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT---  109 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~---  109 (488)
                      ++++.+..|+.++..++...........+. ..++.++.+       +.+.+.  ++.....++.+..++......-   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999987532111111111 123333332       233331  2666667777777764222110   


Q ss_pred             ---------HHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCC---------CchhHHHHHh--cCChHHHH
Q 011316          110 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL  164 (488)
Q Consensus       110 ---------~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~i~~l~  164 (488)
                               ..+.  ..++.++.+...     .++++...+++.+..++..         .+........  ...++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  345566665533     4788889999988887541         1111111111  12344444


Q ss_pred             HHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-----CChhHHHHHHHHHH
Q 011316          165 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS  225 (488)
Q Consensus       165 ~~l~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~v~~~al~~L~  225 (488)
                      ..+...++              ...|..+..++..++...+   ......+++.+...+.+     .++..++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1355666777777765432   22333444555555544     57889999999999


Q ss_pred             HhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011316          226 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  304 (488)
Q Consensus       226 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~  304 (488)
                      .++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .+. .+++.++..|+    +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l~----~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGLN----SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHHH----SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhC----hHHHHH
Confidence            998765433221111 23332222221 34788999999999998863221111 111 34555666552    578999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHH--CCChHHHHhhc
Q 011316          305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVS--QGCIKPLCDLL  379 (488)
Q Consensus       305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~~~~L~~ll  379 (488)
                      |++++.+++..........++ +++..+..++..+  +.+.+..+..+++.++.... .+...++..  ..++..+.+++
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~  641 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC  641 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999755554444443 4777788888874  57888999999999876432 233333222  12333333444


Q ss_pred             CCC--CHHHHHH---HHHHHHHHHHhhhhh-hccCCCC-ccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 011316          380 NCP--DPRIVTV---CLEGLENILKAGEAE-KNMGNTG-GVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILET  450 (488)
Q Consensus       380 ~~~--~~~v~~~---al~~L~~l~~~~~~~-~~~~~~~-~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~~  450 (488)
                      +..  +++.+..   ++..|..++..-... ....+.. ....+...+  ...++.+..++..  .+.++.+.+..++.+
T Consensus       642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~  719 (971)
T 2x1g_F          642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKH  719 (971)
T ss_dssp             TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            433  3323333   444444444321110 0000000 001122322  2346666666432  467898998888887


Q ss_pred             hcC
Q 011316          451 YWV  453 (488)
Q Consensus       451 ~~~  453 (488)
                      +..
T Consensus       720 ~~~  722 (971)
T 2x1g_F          720 AIT  722 (971)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.53  E-value=1.6e-05  Score=85.37  Aligned_cols=389  Identities=10%  Similarity=0.052  Sum_probs=218.9

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCC---------CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011316           30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIER---------SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL   98 (488)
Q Consensus        30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L   98 (488)
                      +....++..+.+  .+..+|..|+..|.+.+...-         ++..+..++.    .++..+.++. +.+|..++.++
T Consensus        35 ~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~i  109 (960)
T 1wa5_C           35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAI  109 (960)
T ss_dssp             THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHH
Confidence            455567777754  467999999999999876421         1122333343    3444444456 79999999999


Q ss_pred             HHhcCC-CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc------hhHHHHH--hcCChHHHHHH---
Q 011316           99 TNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLVL--SNGALMPLLAQ---  166 (488)
Q Consensus        99 ~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~i~~l~~~---  166 (488)
                      +.++.. .|+..     .++++.|+..+.++++..+..++.++..++....      +.+..+.  -....++++.+   
T Consensus       110 a~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~  184 (960)
T 1wa5_C          110 SSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKT  184 (960)
T ss_dssp             HHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999872 12111     3578999999988888899999999999986321      1111110  01123333332   


Q ss_pred             ----hcccc-c-------HhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC------C---------hhHHH
Q 011316          167 ----FNEHA-K-------LSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN------D---------DEVLT  218 (488)
Q Consensus       167 ----l~~~~-~-------~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~------~---------~~v~~  218 (488)
                          +.... +       ..+...++.++..+.... +..........++.+..++...      +         ..++.
T Consensus       185 ~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~  264 (960)
T 1wa5_C          185 VDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKS  264 (960)
T ss_dssp             HHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHH
Confidence                32211 1       123334566666655432 2111112244555556665421      1         24677


Q ss_pred             HHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHH----
Q 011316          219 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPC----  288 (488)
Q Consensus       219 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~----  288 (488)
                      .++.++..+....++.....+. .+++.....+.     ..++.++..++..+..++.... .. .++. ...++.    
T Consensus       265 ~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~  341 (960)
T 1wa5_C          265 SIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQ  341 (960)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHH
Confidence            8888888887655443332222 34555555553     2456788888888888775322 11 1111 122222    


Q ss_pred             -HHHHhcc----------------------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cC
Q 011316          289 -LLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------NA  339 (488)
Q Consensus       289 -L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~~  339 (488)
                       ++..+.-                      ......|..|..+|..++...++..   +. .+++.+.+.+.      +.
T Consensus       342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~  417 (960)
T 1wa5_C          342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSK  417 (960)
T ss_dssp             THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----
T ss_pred             HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcch
Confidence             2233210                      1022567788888888877544322   11 13444445555      45


Q ss_pred             ChhHHHHHHHHHHHhccCCC-HH----------HHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhhh
Q 011316          340 EFEIKKEAAWAISNATSGGS-NE----------QIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAEK  405 (488)
Q Consensus       340 ~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~  405 (488)
                      ++..|+.|+.+++.++.++. .+          ....+...-+++    .+.++   ++.+|..++++++.+...-.   
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~---  490 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT---  490 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC---
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC---
Confidence            77899999999999975421 00          111111111222    23444   78999999999998865421   


Q ss_pred             ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316          406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       406 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                                 .+.+.  ..++.+...+.++++.|+..|...+.++.+..
T Consensus       491 -----------~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          491 -----------KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             -----------HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             -----------HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence                       11122  12455666667778999999999999988753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.52  E-value=1e-05  Score=84.26  Aligned_cols=304  Identities=13%  Similarity=0.144  Sum_probs=210.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc--h
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--E  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~--~  107 (488)
                      ..+..+++.+...+..-+..++..+..+..+......   +..+++..+.+.+.+.. ..  +.|+.++..++....  .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHD---VPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---CCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            4455677777765566667888888887765411111   11267888888888876 23  899999999996331  1


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..+.++ -+.++.++..+.+....+|..|-.++..++..-+...-    ...++.++..+.....-..+..|+.++..++
T Consensus        88 ~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~  162 (986)
T 2iw3_A           88 SVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMV  162 (986)
T ss_dssp             TTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             Ccccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            222222 25789999998888899999988888877644332211    2357888888854556788999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch-hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      ...+.........++|.+...+.+..++|...+..++..+|..-++ .+.     ..+|.|++.+.+++.  .-.++..|
T Consensus       163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l  235 (986)
T 2iw3_A          163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLL  235 (986)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHH
T ss_pred             HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHh
Confidence            7654444445678889999999999999999999999888853221 112     678999999988743  44455555


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcC-ChhH
Q 011316          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEI  343 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v  343 (488)
                      +.-+.-.....- .+ .=.+|.|.+-|... ...+++.++-++.|++.  .++.....++- ..+|.+-+....- +|++
T Consensus       236 ~~~tfv~~v~~~-~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          236 GATTFVAEVTPA-TL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             TTCCCCSCCCHH-HH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred             hcCeeEeeecch-hH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence            554432211110 00 11356666677777 78899999999999998  66766666654 5888888877664 8999


Q ss_pred             HHHHHHHHHHhc
Q 011316          344 KKEAAWAISNAT  355 (488)
Q Consensus       344 ~~~a~~aL~~l~  355 (488)
                      |+.|..|+..|.
T Consensus       312 r~~~~~a~~~l~  323 (986)
T 2iw3_A          312 REVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988888888773

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.52  E-value=5e-05  Score=71.76  Aligned_cols=322  Identities=12%  Similarity=0.087  Sum_probs=194.4

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCC--ccHHHHHHcCCH-HHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERS--PPINEVIQSGVV-PRFIEFLSRDDFPQLQFEAAWALTNIASGT  105 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~i-~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~  105 (488)
                      .....++++|+ ..+.++....+..+..++...+.  .....+.+.... ..+.......++.-....+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            34567888887 47788888999999998886520  223333333222 223332223342555566666666665423


Q ss_pred             ch---hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhccc---------
Q 011316          106 SE---NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEH---------  170 (488)
Q Consensus       106 ~~---~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~---------  170 (488)
                      +.   ....+....   -++..|.+ .+...+..++.+|..+.... ..|..+.+.+  .+++++..+...         
T Consensus       157 ~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          157 LHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             CccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            22   112222111   34444544 34555677888888887654 4677766543  355565443211         


Q ss_pred             -------ccHhHHHHHHHHHHHhhcCCCCCChhhhhch--HHHHHHhhcc-CChhHHHHHHHHHHHhccCCch----hHH
Q 011316          171 -------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPA--LPALERLIHS-NDDEVLTDACWALSYLSDGTND----KIQ  236 (488)
Q Consensus       171 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~----~~~  236 (488)
                             ...+++..++.+++-++...+........++  ++.++..++. ..+++..-++.++.|+.....+    ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   1356788999999999877532222222222  3566666764 5799999999999999976531    112


Q ss_pred             -HHHHhCCHHHHHHhcCC---CCcchHhHHHHHHhH-------hh--------------cCCchhhH---------HHh-
Q 011316          237 -AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGN-------IV--------------TGDDMQTQ---------CII-  281 (488)
Q Consensus       237 -~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~-------l~--------------~~~~~~~~---------~~~-  281 (488)
                       .++..++++ ++..|..   .++++....-.....       ++              .-+|....         .+. 
T Consensus       313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             233334544 4444433   344444332111111       11              01121111         111 


Q ss_pred             -hCCChHHHHHHhcc---------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011316          282 -NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  351 (488)
Q Consensus       282 -~~~~~~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL  351 (488)
                       +..++..|.++|.+         +.++.+..-||.-++.+++..|..+..+-+.|+=..+++++.++|++||.+|+.|+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  471 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence             22467889999974         23788888999999999997788887777889999999999999999999999999


Q ss_pred             HHhcc
Q 011316          352 SNATS  356 (488)
Q Consensus       352 ~~l~~  356 (488)
                      ..+..
T Consensus       472 Qklm~  476 (480)
T 1ho8_A          472 QAIIG  476 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.52  E-value=3.3e-08  Score=78.52  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (488)
                      ...++.+..+|++++ +.+|..|+++|+.+..            ..++.|+..++++++.+|..++++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            457888999999988 8999999999887643            126899999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  227 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l  227 (488)
                            ..++.++..+ ++.++.++..++++|..+..          ...++.|..+++++++.++..+..+|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  2477888888 78899999999999999863          35789999999999999999999988753

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.46  E-value=3.8e-08  Score=78.17  Aligned_cols=120  Identities=17%  Similarity=0.169  Sum_probs=91.6

Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      ...++.+...|+++++.+|..|+++|+.+..  +          .++.|+..|+++ ++.+|..|+++|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            3567889999999999999999998887642  1          258899999988 99999999999998853  22  


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011316          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  396 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~  396 (488)
                             .++.|...+.++++.||..|+++|+++..   ++         .++.|..+++++++.++..+..+|.+
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   47888999999999999999999999852   22         46778888899999999999988764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.32  E-value=4e-05  Score=82.41  Aligned_cols=332  Identities=11%  Similarity=0.005  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHhcc-CCCccHHHHHHcCCHHHHHHhhc---------------C-CCChhHHHHHHHHHHHhcCCCc-
Q 011316           45 NIQLDATTQFRKLLSI-ERSPPINEVIQSGVVPRFIEFLS---------------R-DDFPQLQFEAAWALTNIASGTS-  106 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~i~~L~~lL~---------------~-~~~~~v~~~a~~~L~~l~~~~~-  106 (488)
                      .++..++.++...+.. . -+..   .....++.++. |.               + ++ ++++..|+.++..+....+ 
T Consensus       204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~  277 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC  277 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred             hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence            6788888888876652 1 1111   33456666666 41               1 33 7899999999999987322 


Q ss_pred             hhhHHHHhCCCHHHHHH-------hhCCCC---HHHHHHHHHHHhhhhCCCchh-HHHHH-----hc----CChHHHHHH
Q 011316          107 ENTRVVIDHGAVPIFVR-------LLSSPT---DDVREQAVWALGNVAGDSPKC-RDLVL-----SN----GALMPLLAQ  166 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~-------lL~~~~---~~~~~~a~~~L~~l~~~~~~~-~~~~~-----~~----~~i~~l~~~  166 (488)
                      ..+...+. .+++.++.       .+..++   .+.....++.+..++...+.. .+.+.     ..    ..++.++..
T Consensus       278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~  356 (971)
T 2x1g_F          278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHC  356 (971)
T ss_dssp             GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence            11111111 12233332       123334   367777777777776432211 10000     01    123334443


Q ss_pred             hcc----cccHhHHHHHHHHHHHhhcCC--------CCCCh----hhhhchHHHHHHhhccCCh---------------h
Q 011316          167 FNE----HAKLSMLRNATWTLSNFCRGK--------PQPLF----EQTRPALPALERLIHSNDD---------------E  215 (488)
Q Consensus       167 l~~----~~~~~v~~~a~~~L~~l~~~~--------~~~~~----~~~~~~~~~L~~ll~~~~~---------------~  215 (488)
                      ...    ..++.+...+++.+..++...        .....    .....+++.++..+.-++.               .
T Consensus       357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~  436 (971)
T 2x1g_F          357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC  436 (971)
T ss_dssp             HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred             HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence            311    246778889998888876511        01111    1223444444444432211               3


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011316          216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  290 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  290 (488)
                      .|..+..++..++...++.   +.. -+++.+...+.+     .++..++.++.+++.++.+......     ..++.++
T Consensus       437 ~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~  507 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM  507 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence            4556666776666543311   111 122233333322     5778999999999999876543221     2233333


Q ss_pred             HHh---c--ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316          291 DLL---T--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  365 (488)
Q Consensus       291 ~lL---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  365 (488)
                      .++   .  ++ ++.+|..++|+++.++..-....+.+-  .+++.++..+.   +.|+..|++++.+++.........+
T Consensus       508 ~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~  581 (971)
T 2x1g_F          508 RVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPY  581 (971)
T ss_dssp             HHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhcccc
Confidence            333   2  23 788999999999998862011111111  25667777772   7899999999999997665444444


Q ss_pred             HHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 011316          366 LVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       366 l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~  400 (488)
                      +-  .++..|.+++..  -+.+.+..+++++..++..
T Consensus       582 ~~--~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          582 AD--PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HH--HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            32  366677777776  3568888999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.31  E-value=0.00011  Score=76.79  Aligned_cols=299  Identities=15%  Similarity=0.154  Sum_probs=203.6

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC---chhHHHH
Q 011316           78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS---PKCRDLV  154 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~  154 (488)
                      +.+-+...+ ..-+..++..+..+..+.....  ....+++..+.+.+.+....  +.|+.++..++...   +.....+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            444455544 3445667777777765332111  11226778888888774333  89999999998543   2232333


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCch
Q 011316          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTND  233 (488)
Q Consensus       155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~  233 (488)
                      +  +.++.++... .+....|+..|..++..+...-+   ......++|.++..+.+. .+..+..++.++..++...++
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            3  4677888877 56667899888888888776532   122377899999998765 799999999999999976654


Q ss_pred             hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       234 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      ....-+ ..++|.+...+.+..+++...|..++..+|..  |.+.      ...++.|++.+.++ +.  ..+++..|+.
T Consensus       168 ~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~  237 (986)
T 2iw3_A          168 QVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA  237 (986)
T ss_dssp             HHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred             HHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence            433222 37899999999999999999999999888862  2211      15688899999877 33  3344444443


Q ss_pred             HhcC---CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC-CCHHHHHHHHHCCChHHHHhhcC-CCCHHH
Q 011316          312 ITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG-GSNEQIKFLVSQGCIKPLCDLLN-CPDPRI  386 (488)
Q Consensus       312 l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v  386 (488)
                      -..-   ......     =++|.|.+-|......++++++..+.||+.- .++.....++. .+++.+....+ ..+|++
T Consensus       238 ~tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          238 TTFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             CCCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred             CeeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence            2221   122111     1578888888888899999999999999863 34554444443 67777777666 478999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 011316          387 VTVCLEGLENILKAGEA  403 (488)
Q Consensus       387 ~~~al~~L~~l~~~~~~  403 (488)
                      |+.+..++..+...+..
T Consensus       312 r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          312 REVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999888766543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.27  E-value=0.00028  Score=75.77  Aligned_cols=401  Identities=13%  Similarity=0.096  Sum_probs=208.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH----H--cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI----Q--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~--~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      ..++.+++.+.  +++.+..|+.++..++...........+    .  -+..+.+...+...+ .+.....++.+..++.
T Consensus       241 ~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~  317 (963)
T 2x19_B          241 ALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGE  317 (963)
T ss_dssp             HHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence            45666777764  5678889999999998754211111111    1  112222222334445 4555566667766654


Q ss_pred             CCchh-------hHHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCC--------chhHHHHHh--cCChH
Q 011316          104 GTSEN-------TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALM  161 (488)
Q Consensus       104 ~~~~~-------~~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~  161 (488)
                      ..+..       ...+  ..+++.++.+...     .++.+...++..+..++...        +.....+..  ...++
T Consensus       318 ~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  395 (963)
T 2x19_B          318 NHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVD  395 (963)
T ss_dssp             HHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            21111       1111  1345566665553     34556666666666665411        111111110  01233


Q ss_pred             HHHHHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHH
Q 011316          162 PLLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWA  223 (488)
Q Consensus       162 ~l~~~l~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~al~~  223 (488)
                      .++..+....+              .+.+..+..+|..++...+   ......+.+.+...+    .+.++..++.++.+
T Consensus       396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a  472 (963)
T 2x19_B          396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYG  472 (963)
T ss_dssp             HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34443421111              1224455556655553221   112233444454555    45678899999999


Q ss_pred             HHHhccCCchhHHHHHHhCCHHHHHHhc---CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316          224 LSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       224 L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ++.++........     ..++.++..+   .++++.++..++++++.++..-.... ..+ ..+++.++..|++   +.
T Consensus       473 l~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~  542 (963)
T 2x19_B          473 FQSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PE  542 (963)
T ss_dssp             HHHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GG
T ss_pred             HHHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---ch
Confidence            9999976443211     2233333332   33577899999999999886322211 222 3688888888854   67


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHh
Q 011316          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~  377 (488)
                      ++..|++++.+++....+.....+ ..++..|..++..+  +.+.+..+..+++.++...+ .+..+++.  .+++.+..
T Consensus       543 V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~  619 (963)
T 2x19_B          543 LSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQ  619 (963)
T ss_dssp             GHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHH
Confidence            999999999999864332221111 12455566666653  56788999999999986554 33333322  24444444


Q ss_pred             hcC----C-CCHHHHH---HHHHHHHHHHHhhhhhhccC-C----------CCccchHHHHHHhhccHHHHHHhh--cCC
Q 011316          378 LLN----C-PDPRIVT---VCLEGLENILKAGEAEKNMG-N----------TGGVNLFAQAIDDAEGLEKIENLQ--SHD  436 (488)
Q Consensus       378 ll~----~-~~~~v~~---~al~~L~~l~~~~~~~~~~~-~----------~~~~~~~~~~l~~~g~~~~l~~l~--~~~  436 (488)
                      .++    . .+++.+.   ..+++|..++..-....... .          .....++...+.+  .++.+..++  ...
T Consensus       620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~  697 (963)
T 2x19_B          620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ--VFQLIQKVLSKWLN  697 (963)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH--HHHHHHHHHHhccC
Confidence            332    2 2444443   45556655554422100000 0          0011223333322  244444443  234


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 011316          437 NTEIYEKAVKILETYWV  453 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~~~  453 (488)
                      +.++.+.+..++.++..
T Consensus       698 ~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          698 DAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            67888888888887654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.20  E-value=3e-05  Score=69.57  Aligned_cols=187  Identities=16%  Similarity=0.105  Sum_probs=138.2

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316          202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       202 ~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      +..+++-|.+.+.+....++.-|..+...+.+....+++.+++..|+......+..++..++.++.++..+....-..+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            44566667778888899999999996666777888899999999999999999999999999999999885433222223


Q ss_pred             hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH----------cCChHHHHHHHh---cCChhHHHHHH
Q 011316          282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE----------AGIIGPLVNLLL---NAEFEIKKEAA  348 (488)
Q Consensus       282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------~~~l~~L~~ll~---~~~~~v~~~a~  348 (488)
                      ...++..+..++.+. +..|.+.|+..|..++..++.....+.+          ...+..|+.+|+   +.|.+++.+|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            567889999999987 8999999999999998744322222221          124889999998   56899999999


Q ss_pred             HHHHHhccCCC-HH----HHHHHHHCCChHHHHhhcCCC--CHHHHHH
Q 011316          349 WAISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV  389 (488)
Q Consensus       349 ~aL~~l~~~~~-~~----~~~~l~~~~~~~~L~~ll~~~--~~~v~~~  389 (488)
                      ..+..+....+ .+    ....+-+.|.-..+.+.++..  +++++.+
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88888776543 22    334444556556666666654  5565544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.19  E-value=0.0005  Score=73.32  Aligned_cols=338  Identities=12%  Similarity=0.085  Sum_probs=184.6

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCC-C--c--hhhHHHHh
Q 011316           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASG-T--S--ENTRVVID  114 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~-~--~--~~~~~~~~  114 (488)
                      +.++++...++.++...++   .-....+++.+.++.++ .+|.  + ++++..|+.||..+... .  +  +..+.+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            4567777788888888775   23466778889999999 8885  3 78999999999999872 2  2  12211110


Q ss_pred             --CCCHHHH--------------HHhhCCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhcccc
Q 011316          115 --HGAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus       115 --~g~i~~L--------------~~lL~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~  171 (488)
                        .+.++.+              ...-...+.+..+..++.+..+..       ..+..+..+.  .++..++..- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              111122346666666666655532       1122122211  1223344433 445


Q ss_pred             cHhHHHHHHHHHHHhhcCCC--CCChhhhh----chHHHHHHhhccCC--------------------hh-HH----HHH
Q 011316          172 KLSMLRNATWTLSNFCRGKP--QPLFEQTR----PALPALERLIHSND--------------------DE-VL----TDA  220 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~--~~~~~~~~----~~~~~L~~ll~~~~--------------------~~-v~----~~a  220 (488)
                      +.++...++..-..++....  ........    .+++.++.-+.-+.                    .+ ..    ..+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            67777777766555554221  11122223    33444444443222                    00 01    122


Q ss_pred             HHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc---
Q 011316          221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ---  295 (488)
Q Consensus       221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---  295 (488)
                      +..+.++..  ++..+     -+++.+.+.+.+  .++..+++++++++.++.+.......-.-..+++.|+.++.+   
T Consensus       437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence            222222211  01111     123334444443  578899999999999998655432222222567778887763   


Q ss_pred             --cchhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH------
Q 011316          296 --NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK------  364 (488)
Q Consensus       296 --~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------  364 (488)
                        + ...++..++|+++.++.   .+++...     .++..|++.+..+++.++..|++++.+++..+......      
T Consensus       510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~  583 (1023)
T 4hat_C          510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1023)
T ss_dssp             HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence              3 45677788999998876   2343322     25666777777777899999999999999755332210      


Q ss_pred             --HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          365 --FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       365 --~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                        ++-  .++..+......-+++-+..+.+++..++...+
T Consensus       584 ~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          584 EPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence              111  123333344444455666677777777776543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.19  E-value=0.0025  Score=68.98  Aligned_cols=314  Identities=10%  Similarity=0.129  Sum_probs=171.6

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC--ch--
Q 011316           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS--PK--  149 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~--~~--  149 (488)
                      ++.+.+.+.+..++.++..++.++.+.....+  ...+.+..+++.+. .++  .+++++..|+.+|..+....  +.  
T Consensus       196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~  271 (1049)
T 3m1i_C          196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDND  271 (1049)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchh
Confidence            44445555544447899999999988776333  23355567777777 344  37899999999999998542  21  


Q ss_pred             -hHHHHHh--cCChHHHHH-----------Hh--cccccHhHHHHHHHHHHHhhcCC------CCCChhhhhchHHHHHH
Q 011316          150 -CRDLVLS--NGALMPLLA-----------QF--NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALER  207 (488)
Q Consensus       150 -~~~~~~~--~~~i~~l~~-----------~l--~~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~L~~  207 (488)
                       ....+..  .+.+..+..           ..  ..+.+.+.....+..+..+....      +.........+++.++.
T Consensus       272 ~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~  351 (1049)
T 3m1i_C          272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQ  351 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence             1111111  011111111           11  01224444455555554433211      11112233456777777


Q ss_pred             hhccCChhHHHHHHHHHHHhcc----CC--chhHHHHHHhCCHHHHHHhcCCCCc----------------------chH
Q 011316          208 LIHSNDDEVLTDACWALSYLSD----GT--NDKIQAVIEAGVCPRLVELLRHPSP----------------------SVL  259 (488)
Q Consensus       208 ll~~~~~~v~~~al~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~  259 (488)
                      ....++..+...++..+..++.    ..  ......++. .+++.++..+..+++                      ..+
T Consensus       352 ~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~  430 (1049)
T 3m1i_C          352 LSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY  430 (1049)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHH
Confidence            7777788888888888877765    21  112222222 344555555533210                      112


Q ss_pred             hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316          260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      ..+..+|..++...+.....    -+.+.+...+.+ ..++..+..++++++.++....+....-.-..+++.+..+...
T Consensus       431 ~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~  506 (1049)
T 3m1i_C          431 KSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK  506 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence            23455555555322211111    123344444442 2278889999999999986422221111111245555554321


Q ss_pred             -----CChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316          339 -----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       339 -----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                           +++.++..++++++.++..-  .++...     .+++.+...+.++++.++..|+.++.+++....
T Consensus       507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                 23445556889999776431  222222     357778888888899999999999999998654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.17  E-value=3.5e-05  Score=69.18  Aligned_cols=188  Identities=13%  Similarity=0.142  Sum_probs=141.3

Q ss_pred             HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 011316          247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-E  325 (488)
Q Consensus       247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~  325 (488)
                      ++..|.+.+...+..++..|..+..........++..+++..|+++..+. +..++..++.++.++..+ ......++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence            34445556677888999999996666777889999999999999999998 999999999999999886 44454554 3


Q ss_pred             cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH----------CCChHHHHhhcC---CCCHHHHHHHHH
Q 011316          326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS----------QGCIKPLCDLLN---CPDPRIVTVCLE  392 (488)
Q Consensus       326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~----------~~~~~~L~~ll~---~~~~~v~~~al~  392 (488)
                      ..++..+..++.+.+..|.+.|+..|..++...+. ....+.+          ...++.|+.+|.   ..|.+++..++.
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            45788888999888889999999999999876521 1111111          134888999997   678999999999


Q ss_pred             HHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHH
Q 011316          393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEK  443 (488)
Q Consensus       393 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~  443 (488)
                      .+..++...+....      ...+...+++.|.-..+...+.+.  +++++++
T Consensus       280 LIN~lL~~apd~d~------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDS------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHH------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            99988876553221      112577788888777788877665  6676654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.08  E-value=0.00053  Score=73.65  Aligned_cols=344  Identities=13%  Similarity=0.105  Sum_probs=188.7

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh---CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011316           83 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        83 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      .+.+ ...++.++++++.++.+..+..     ...++.++..+   .++++.++..++++++.++..-....+ . -..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHH
Confidence            3445 6789999999999998543311     12344444433   335788999999999999753211111 1 2357


Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCc-hhHH
Q 011316          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  236 (488)
Q Consensus       160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~-~~~~  236 (488)
                      ++.++..+ .+  +.++..|++++.+++......-......++..+..++..+  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77888887 33  7899999999999997543222234456666777777653  57888999999999886543 3333


Q ss_pred             HHHHhCCHHHHHHhc----CCC-CcchHh---HHHHHHhHhhcCCch---------------------hhHHHhhCCChH
Q 011316          237 AVIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCIINHQALP  287 (488)
Q Consensus       237 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~a~~~L~~l~~~~~~---------------------~~~~~~~~~~~~  287 (488)
                      ..++ .+++.+...+    ... +++.+.   ..+.+|+.+...-..                     ..-..+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3332 3444443333    222 333333   345555554432110                     000111223455


Q ss_pred             HHHHHhccc-chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhcc--CCCH---
Q 011316          288 CLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS--GGSN---  360 (488)
Q Consensus       288 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~--~~~~---  360 (488)
                      .+..++... .+..+.+.++.++..++..-.+....++. .+++.++..+... .+    ..++.+..++.  ..+.   
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~  761 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVP-QLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAHF  761 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHH-HHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHH-HHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcchH
Confidence            555555431 15678888888888876421111111111 1222333333332 22    23334444432  1111   


Q ss_pred             HHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch-HHHHHHhhccHHHHHHhhcCC
Q 011316          361 EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIENLQSHD  436 (488)
Q Consensus       361 ~~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~l~~l~~~~  436 (488)
                      .....+.+ ..+.....++.   ..+++++......+..++......-..     ... +..      .++.+...+.++
T Consensus       762 ~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~~l~~~  829 (963)
T 2x19_B          762 PPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVLALKFP  829 (963)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHHHTTCS
T ss_pred             HHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHHHcCCC
Confidence            11222111 12333333333   246899999999999998776643210     000 122      234455556788


Q ss_pred             CHHHHHHHHHHHHHhcCCC
Q 011316          437 NTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~~~~~  455 (488)
                      +..+...+...+.++...-
T Consensus       830 ~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          830 EAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             CHHHHHHHHHHHHHHGGGT
T ss_pred             CHHHHHHHHHHHHHHHhcC
Confidence            9999999999999988653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.02  E-value=0.0017  Score=69.22  Aligned_cols=315  Identities=10%  Similarity=0.122  Sum_probs=176.5

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC---c-
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P-  148 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~---~-  148 (488)
                      +++.+.++|.++.++++...++.++.....--+  ...+++.+.++.+. .++.  +++++..|+.+|..+....   + 
T Consensus       195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          195 IFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence            444555556554447888899999999887322  45567788999999 8884  5889999999999998632   2 


Q ss_pred             -hhHHHHHhc--CChHHH-----------HHHh--cccccHhHHHHHHHHHHHhhcCCCC----C-C-hhhhhchHHHHH
Q 011316          149 -KCRDLVLSN--GALMPL-----------LAQF--NEHAKLSMLRNATWTLSNFCRGKPQ----P-L-FEQTRPALPALE  206 (488)
Q Consensus       149 -~~~~~~~~~--~~i~~l-----------~~~l--~~~~~~~v~~~a~~~L~~l~~~~~~----~-~-~~~~~~~~~~L~  206 (488)
                       ...+.+...  +.+..+           -..+  ....|.+.....+..+..+......    . . ......++..++
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             122111110  011111           1111  1233566666777777666554311    0 0 111122333555


Q ss_pred             HhhccCChhHHHHHHHHHHHhccC---C---chhHHHHHHhCCHHHHHHhcCCCC---------cch------------H
Q 011316          207 RLIHSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLRHPS---------PSV------------L  259 (488)
Q Consensus       207 ~ll~~~~~~v~~~al~~L~~l~~~---~---~~~~~~~~~~~~l~~L~~lL~~~~---------~~v------------~  259 (488)
                      .+-..++.++...++..-..++..   .   ......+.. .+++.++..+..+.         .+.            .
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~  429 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence            555567788877777766655531   0   111122222 35555665555433         000            0


Q ss_pred             hHHH-HHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHH
Q 011316          260 IPAL-RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLL  336 (488)
Q Consensus       260 ~~a~-~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll  336 (488)
                      .... .+|..++.-.....   ++ -+++.+...+.+ ..++..+..++|+++.++.+- ++....++. .+++.|+.++
T Consensus       430 f~~~Rd~L~~l~~l~~~~~---~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~  504 (1023)
T 4hat_C          430 YKSEREVLVYLTHLNVIDT---EE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLC  504 (1023)
T ss_dssp             HHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHH---HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhh
Confidence            0011 22222221111100   00 122333333333 237899999999999999853 332333332 3788888888


Q ss_pred             hc-----CChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316          337 LN-----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       337 ~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      ..     +...++..++|+++..+..-  .++..+     .++..|.+.+.++++.+...|++++.+++..+..
T Consensus       505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            74     23446677889998876532  223222     3577788888778899999999999999986553

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.01  E-value=0.0016  Score=70.49  Aligned_cols=341  Identities=11%  Similarity=0.094  Sum_probs=181.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chh----hHHHHh-
Q 011316           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SEN----TRVVID-  114 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~~~~-  114 (488)
                      .+++.++..++.++...++--   ....+.+...++.+.+.+.. + ++++..|+.+|..+.... +..    ...+.. 
T Consensus       206 ~~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            356788888999988876532   23445567778877743322 4 899999999999998642 111    111110 


Q ss_pred             -CCCHHHHHH-hh-------------CCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhccccc
Q 011316          115 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK  172 (488)
Q Consensus       115 -~g~i~~L~~-lL-------------~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~  172 (488)
                       .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ...++.++... ...+
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222222 11             12344555555555544432       111111111  12344455544 4457


Q ss_pred             HhHHHHHHHHHHHhhc----CCCCC--ChhhhhchHHHHHHhhccCC-------------------h---hHHHHHHHHH
Q 011316          173 LSMLRNATWTLSNFCR----GKPQP--LFEQTRPALPALERLIHSND-------------------D---EVLTDACWAL  224 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~----~~~~~--~~~~~~~~~~~L~~ll~~~~-------------------~---~v~~~al~~L  224 (488)
                      .++...++..+..++.    .....  .......+++.++..+.-++                   .   ..+..+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            7788888877777776    32111  11233445555555443210                   0   1233445555


Q ss_pred             HHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-----ccc
Q 011316          225 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-----QNY  297 (488)
Q Consensus       225 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~  297 (488)
                      ..++...+..   +.. -+.+.+...+.  ..++..++.++++++.++.........-.-..+++.+..+..     .+ 
T Consensus       438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-  512 (1049)
T 3m1i_C          438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-  512 (1049)
T ss_dssp             HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred             HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence            5555322211   111 12344444444  356788999999999998654322111111124444444332     13 


Q ss_pred             hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH--------HHH
Q 011316          298 KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI--------KFL  366 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l  366 (488)
                      .+.++..++|+++.++.   .+++.    +. .+++.++..+.++++.|+..|++++.+++..+.....        .++
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~----l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~  587 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNF----LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI  587 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence            55566679999998875   22222    22 3677788888888899999999999999975433221        111


Q ss_pred             HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          367 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       367 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      -  .++..+..++..-+.+-.....+++..++...
T Consensus       588 ~--~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          588 Q--TIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             H--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             H--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            1  23344444455445544556667777776543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.89  E-value=0.00062  Score=72.49  Aligned_cols=417  Identities=12%  Similarity=0.113  Sum_probs=207.0

Q ss_pred             hhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH--HHHHcCCHHHHHHhhc
Q 011316            6 IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEFLS   83 (488)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~i~~L~~lL~   83 (488)
                      ++|+..|---.|...++..     +.++.+.+.|.+  +.++..|+.+|..+++... +...  .++..=.+...+..+.
T Consensus       214 L~~l~s~i~wi~~~~i~~~-----~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~-~~~~k~~li~~l~L~~~~~~l~  285 (980)
T 3ibv_A          214 LQVYAQWVSWININLIVNE-----PCMNLLYSFLQI--EELRCAACETMTEIVNKKM-KPLEKLNLLNILNLNLFFSKSQ  285 (980)
T ss_dssp             HHHHHHHTTTSCHHHHHCH-----HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHhhcCHHhhhcc-----hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHHhHHHHHHHHh
Confidence            4455544444444444444     677778888765  7999999999999998763 2211  1221101112222222


Q ss_pred             --CCCChhHHHHHHHHHHHhcC------CCc-----hhhHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC--
Q 011316           84 --RDDFPQLQFEAAWALTNIAS------GTS-----ENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--  146 (488)
Q Consensus        84 --~~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~--  146 (488)
                        ..+ .+.....++.+..++.      ..+     +.+....  -.++++.++.++.+++.++...++..+..+...  
T Consensus       286 ~~~~D-~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~  364 (980)
T 3ibv_A          286 EQSTD-PNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLR  364 (980)
T ss_dssp             ---CC-HHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHH
T ss_pred             ccccc-HHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence              234 6665544444433321      111     1111111  125789999999998888888887777665421  


Q ss_pred             --------CchhHHHHHhcCChHHHHHHhcccc-----------c----HhHHHHHHHHHHHhhcC-CCCCChhhhh-ch
Q 011316          147 --------SPKCRDLVLSNGALMPLLAQFNEHA-----------K----LSMLRNATWTLSNFCRG-KPQPLFEQTR-PA  201 (488)
Q Consensus       147 --------~~~~~~~~~~~~~i~~l~~~l~~~~-----------~----~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~  201 (488)
                              .+..+..+.  ..+..+++.+...+           +    .+.|.... .+...+.. .+........ .+
T Consensus       365 ~~~~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i  441 (980)
T 3ibv_A          365 KESSSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI  441 (980)
T ss_dssp             HHTTSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hccccccccHHHHHHHH--HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence                    111111111  13333444442111           0    12333333 33222211 1111111001 12


Q ss_pred             HHHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHHHHH-Hh----CCHHHHHHhcC-----CCCcchHhHHHHHHhH
Q 011316          202 LPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVI-EA----GVCPRLVELLR-----HPSPSVLIPALRTVGN  268 (488)
Q Consensus       202 ~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~----~~l~~L~~lL~-----~~~~~v~~~a~~~L~~  268 (488)
                      .+.+...+.   +.++..++.++.+++.+++.-......+. ..    .+++.+..++.     .+.+.++..++++++.
T Consensus       442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r  521 (980)
T 3ibv_A          442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR  521 (980)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            222223332   34688899999999999876432111000 00    13344555544     5678999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----Hhc
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL----LLN  338 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l----l~~  338 (488)
                      .+..-..      ....++.++..+-      ++ +..++..|+.++.+++.......     .+.++.++..    +..
T Consensus       522 ys~~~~~------~~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~~L-----~~~~~~il~~l~~lL~~  589 (980)
T 3ibv_A          522 YASFFDY------ESAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKKQV-----VNYTESSLAMLGDLLNI  589 (980)
T ss_dssp             TGGGGGT------CCTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTTTC-----SSSHHHHHHHTTGGGCC
T ss_pred             HHHHHhc------CchhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhHHh-----hhHHHHHHHHHHHhhcC
Confidence            8874332      2244555555443      45 67899999999999987322211     1223333333    331


Q ss_pred             C-----C----------------hhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHH----HHhhcCCC----CHHH-
Q 011316          339 A-----E----------------FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKP----LCDLLNCP----DPRI-  386 (488)
Q Consensus       339 ~-----~----------------~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~----L~~ll~~~----~~~v-  386 (488)
                      .     +                .+-+.....+++.++...  +.+......+ .++.+    +...+...    +... 
T Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~  668 (980)
T 3ibv_A          590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIIS  668 (980)
T ss_dssp             CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred             cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHH
Confidence            1     0                123455666677666432  2332222222 23333    33333321    2222 


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcCC
Q 011316          387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ....+.++.++.+.-....     .+..++...|.+.  ++.+...+.  ..+..|++++...+.++...
T Consensus       669 i~~~i~al~~lakgf~~~~-----~~~~p~~~~f~~~--~~~il~~l~~~~~~~~irea~~~~~~r~i~~  731 (980)
T 3ibv_A          669 VYCSLMAIGNFAKGFPARG-----SEEVAWLASFNKA--SDEIFLILDRMGFNEDIRGAVRFTSGRIINV  731 (980)
T ss_dssp             HHHHHHHHHHHHHTSCSCC------CCCSHHHHHHHH--HHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhccCCccc-----CCCCcHHHHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            2244555666655332111     1112244555433  444544443  45789999999999988764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.75  E-value=0.00011  Score=78.19  Aligned_cols=305  Identities=10%  Similarity=0.020  Sum_probs=165.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--chhhHHHHhCCCH
Q 011316           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENTRVVIDHGAV  118 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i  118 (488)
                      +.++.++..++.++...++   .-....+++.+.++.+.++|.+   ++++..|+.||..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4778888899999999876   3446777778899999999875   789999999999998743  3333333322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHhhhhC------CCc-----hhHHH--HHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316          119 PIFVRLLS--SPTDDVREQAVWALGNVAG------DSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       119 ~~L~~lL~--~~~~~~~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L  183 (488)
                      ...+..+.  .++.++.+..++.+..++.      ..+     +.+..  -.-.+.++.++... .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            12222222  3677776655555544321      111     10000  01124677777777 455667766666666


Q ss_pred             HHhhcCC---CC--CChh----hhhchHHHHHHhhccCC-----h-----------hHHHHHHHHHHHhccCCchhHHHH
Q 011316          184 SNFCRGK---PQ--PLFE----QTRPALPALERLIHSND-----D-----------EVLTDACWALSYLSDGTNDKIQAV  238 (488)
Q Consensus       184 ~~l~~~~---~~--~~~~----~~~~~~~~L~~ll~~~~-----~-----------~v~~~al~~L~~l~~~~~~~~~~~  238 (488)
                      ..+....   +.  ....    ....+++.++.-++-++     .           +.|......+..++.-.++..-..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            5554321   11  1111    22334444444443210     0           233333322222221121111110


Q ss_pred             HHhCCHHHHHHhcC---CCCcchHhHHHHHHhHhhcCCchhhHHHh-h----CCChHHHHHHhc-----ccchhhHHHHH
Q 011316          239 IEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCII-N----HQALPCLLDLLT-----QNYKKSIKKEA  305 (488)
Q Consensus       239 ~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~----~~~~~~L~~lL~-----~~~~~~v~~~a  305 (488)
                      .-.-+.+.+.+.+.   +.++..++.++.+++.++.+-........ .    ..+++.+..+++     .+ .+.++..+
T Consensus       437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~~  515 (980)
T 3ibv_A          437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLLY  515 (980)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHHH
Confidence            00011122223332   23578889999999999876443221110 1    124455555554     44 78999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CChhHHHHHHHHHHHhccCCC
Q 011316          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKEAAWAISNATSGGS  359 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~  359 (488)
                      +++++..+.--..      ....++.++..+-+      ++..|+..|+.++.+++..+.
T Consensus       516 ~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          516 MEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            9999998872111      12355555555544      467899999999999987654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.63  E-value=0.00075  Score=64.40  Aligned_cols=244  Identities=12%  Similarity=0.114  Sum_probs=158.4

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCCHHHHHHhh--CC--------CCHHHHHHHHHHHh
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLL--SS--------PTDDVREQAVWALG  141 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL--~~--------~~~~~~~~a~~~L~  141 (488)
                      +.+.|+.-|-++.| ++|..|+.+|..+......  .+..-.+....-.++..+  ..        --..+|+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            45667677778885 9999999999998762221  111001112233333322  11        23689999999999


Q ss_pred             hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316          142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC  221 (488)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al  221 (488)
                      .+ .+-+.-      ..++..++..+ ....-+++..++-.|..+ .+--.    ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            99 655542      23444555444 555678999999999988 11111    1678899999999999999999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh
Q 011316          222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  299 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  299 (488)
                      .+|..++  .++...     .++..+...|.+-+  ..-....+..|+.++.....   .......+|.|.+++.+. -.
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cH
Confidence            9999999  233333     33444555554422  22344556777777775532   112347899999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011316          300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  352 (488)
Q Consensus       300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~  352 (488)
                      .||..++.++..+.  .....+.+.        ..++-..+.+++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence            99999999998887  233222222        24555667888887777774

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.50  E-value=0.021  Score=51.33  Aligned_cols=243  Identities=9%  Similarity=0.085  Sum_probs=169.5

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch----hHHHHHH-hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND----KIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+.+..++..+..-+-+.+..+..+..++.....+    ..+.+.+ ..++..|+..-.  ++++...+-..|..++. .
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir-~  153 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H  153 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHH-h
Confidence            56788888888888999999999999998865432    2233332 134444444443  45566666666766666 5


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhcCChhHHHHHHHH
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      +...+.++....+..+.+.++.+ +.++-..|..++..+..........++..   .++.....++.+++.-+|..++..
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            56777788888888999999999 99999999999998887656666666653   357777888999999999999999


Q ss_pred             HHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--ccH
Q 011316          351 ISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--EGL  426 (488)
Q Consensus       351 L~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~  426 (488)
                      |+.+....  ..-..+++.+..-+..++.+|+++...++..|...+.-++....+..         ++...+...  ..+
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~---------~I~~IL~~Nr~kLl  303 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ---------PILDILLKNQAKLI  303 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH---------HHHHHHHHTHHHHH
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh---------HHHHHHHHHHHHHH
Confidence            99998753  22344555556779999999999999999999988876665433322         256666533  345


Q ss_pred             HHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011316          427 EKIENLQSHD--NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       427 ~~l~~l~~~~--~~~v~~~a~~~l~~~~~~  454 (488)
                      +-+.++..+.  ++...+.-..++..+-.-
T Consensus       304 ~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          304 EFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             HHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence            6666665543  444444444455554443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.50  E-value=0.00029  Score=67.16  Aligned_cols=244  Identities=16%  Similarity=0.136  Sum_probs=155.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHH-HHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHH
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-VIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTN  100 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~i~~L~~lL---------~~~~~~~v~~~a~~~L~~  100 (488)
                      ....|+..|-++.-++|.-|+-.|+.++.......... -.+.+..-.++-+|         .+.--..||+.|+++|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            45678889999999999999999999987542100000 00002222222222         122224699999999999


Q ss_pred             hcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316          101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       101 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~  180 (488)
                      + ..-++.      ..++..++..+..+..++|..++-.|..+.   +-...   -.++++.++..| .+.|.+|+..|+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDVRAVAA  320 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDIKLLSA  320 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHHHHHHH
Confidence            9 634433      355666666667889999999999999881   11111   123566777777 777889999999


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcch
Q 011316          181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV  258 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  258 (488)
                      .+|.-++      .......++..+...|.+.|  .......+..|..++..+...   ......+|.|..++.+.-++|
T Consensus       321 etLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          321 ELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred             HHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHH
Confidence            9999888      11335566777777776532  222344455555555433211   111378999999999999999


Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-HhcccchhhHHHHHHHHH
Q 011316          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~a~~~L  309 (488)
                      |.+++.++..+..  .         .++..+.+ +|-.+ +++++..+..+-
T Consensus       392 R~AVL~TL~tfL~--~---------~~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          392 RTSILNMVKNLSE--E---------SIDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHTTTCCC--H---------HHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--h---------hHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            9999999988871  1         12333333 33344 666766655544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.0022  Score=57.73  Aligned_cols=192  Identities=13%  Similarity=0.116  Sum_probs=127.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH-HHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      ..+| +-+.|.|.+-..|..|+..+.+++......... ...  -....+.+.+.+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3455 668899999999999999999988754222111 111  1234566777888888 8999999999998876221


Q ss_pred             -----hhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316          107 -----ENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       107 -----~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~  180 (488)
                           .......-..+++.|+. .+.+..+.++..+..++..++...... ..     .++.++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence                 11111122345777775 477888999999998888776432211 11     234455555 677899999999


Q ss_pred             HHHHHhhcCC--CCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316          181 WTLSNFCRGK--PQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       181 ~~L~~l~~~~--~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      ..|..+....  ... .......+++.+..++.+.|+.||..+..++..+-..
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            8888876542  111 1223345667788889999999999999999887644

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.43  E-value=0.0027  Score=55.74  Aligned_cols=177  Identities=15%  Similarity=0.099  Sum_probs=119.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHH----HhcccccHhHHHHHHHHHHHhh----cCC
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA----QFNEHAKLSMLRNATWTLSNFC----RGK  190 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~----~l~~~~~~~v~~~a~~~L~~l~----~~~  190 (488)
                      +.+...+-+.+..-+..++..|.......+.   .+..  .+..+++    .+ .+++..+...++.+|..+.    ...
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~-~d~N~~v~~~~L~~L~~l~~~l~~~~  122 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRF-FETNPAALIKVLELCKVIVELIRDTE  122 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            4445555555666666666666665433321   2211  2222233    22 3567888888887777663    222


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011316          191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       191 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      ..........++|.++.-+-++...++..+-.++..+..-.+.       ..+++.+...+.+.++.+|..++..++.+.
T Consensus       123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            2223333467899999999888999999988888776542221       145677888889999999999999999987


Q ss_pred             cCCchhhHHHhhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          271 TGDDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       271 ~~~~~~~~~~~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ......     ....+   +.+..++.++ +..||..|..++..+-.
T Consensus       196 ~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          196 TNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            643322     23467   8999999998 99999999999997765

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0054  Score=55.10  Aligned_cols=189  Identities=11%  Similarity=0.107  Sum_probs=126.8

Q ss_pred             HHHhcCCCCcchHhHHHHHHhHhhcCCchhhH--HHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------
Q 011316          247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ--CII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------  316 (488)
Q Consensus       247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------  316 (488)
                      +-.-|.+.++..|..|+..+..+....+....  ...  -....+.+...+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            56778899999999999999887764332111  111  123456677788888 9999999999999887621      


Q ss_pred             HHHHHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011316          317 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      ....... -..+++.|+.- +.+....++..+..++..++......  .     .+++.+...+++.++.++..++..|.
T Consensus        93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            1111122 22367777754 66777889999998888876543211  1     13566777889999999999999999


Q ss_pred             HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++.......       .+ ....+.  ..++.+..++++.+++||..|..++-.+|.-
T Consensus       165 ~~l~~fg~~~-------~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          165 ELMAAFGLTN-------VN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHTTTT-------CC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCc-------CC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            9886432111       00 122221  2356678889999999999999999887763

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.38  E-value=0.045  Score=58.43  Aligned_cols=314  Identities=12%  Similarity=0.129  Sum_probs=166.9

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHH
Q 011316           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDS-PKCRDL  153 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~  153 (488)
                      +.+...|+.+.++++...++.++.....--+  ...+++.+.++.+ ..++  .+++++..|+.+|..+.... ++..+.
T Consensus       209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~  284 (1073)
T 3gjx_A          209 QLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ  284 (1073)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH
Confidence            3334445444448888889999999987432  3567788888888 4666  46889999999999987542 222222


Q ss_pred             HHh--cCChHHHHHHh------------cccccHhHHHHHHHHHHHhhcCCC-----C-CChhhhhchHHHHHHhhccCC
Q 011316          154 VLS--NGALMPLLAQF------------NEHAKLSMLRNATWTLSNFCRGKP-----Q-PLFEQTRPALPALERLIHSND  213 (488)
Q Consensus       154 ~~~--~~~i~~l~~~l------------~~~~~~~v~~~a~~~L~~l~~~~~-----~-~~~~~~~~~~~~L~~ll~~~~  213 (488)
                      +..  ...+..+-..+            ..+.+++.....+..+..+.....     . ........++..++.+-..++
T Consensus       285 ~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d  364 (1073)
T 3gjx_A          285 FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEE  364 (1073)
T ss_dssp             HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCc
Confidence            211  01111111111            122344555556666665544320     0 011122334445555556778


Q ss_pred             hhHHHHHHHHHHHhccC----C-----ch------------hHHHHHH---hCCHHHHHHhcCCCCc----------chH
Q 011316          214 DEVLTDACWALSYLSDG----T-----ND------------KIQAVIE---AGVCPRLVELLRHPSP----------SVL  259 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~----~-----~~------------~~~~~~~---~~~l~~L~~lL~~~~~----------~v~  259 (488)
                      .++...++..-..+...    .     ..            ....+..   ..+...++..+..+.+          .+|
T Consensus       365 ~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~r  444 (1073)
T 3gjx_A          365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVR  444 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHH
Confidence            88877777665544321    0     00            0111111   0233334444443321          011


Q ss_pred             h------------HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcC-CHH-HHHHHH
Q 011316          260 I------------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAG-NVN-QIQAII  324 (488)
Q Consensus       260 ~------------~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~-~~~-~~~~l~  324 (488)
                      +            ..-.++..++.-.......    -..+.+.+.+.. ..++.....++|+++.++.. .++ ....+.
T Consensus       445 e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          445 EFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence            1            0111222222111111111    122333333332 22688899999999999763 222 222233


Q ss_pred             HcCChHHHHHHHhcC---C--hhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316          325 EAGIIGPLVNLLLNA---E--FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~---~--~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                        .+++.|+.+...+   +  ..++...+++++.....-  .++..+     .++..|.+.+.++++.++..|+.++..+
T Consensus       521 --~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i  593 (1073)
T 3gjx_A          521 --TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKI  593 (1073)
T ss_dssp             --HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred             --HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence              3778888777654   2  234555667887765431  223322     2677888888888999999999999999


Q ss_pred             HHhhhhh
Q 011316          398 LKAGEAE  404 (488)
Q Consensus       398 ~~~~~~~  404 (488)
                      +..+...
T Consensus       594 ~~~C~~~  600 (1073)
T 3gjx_A          594 AQKCRRH  600 (1073)
T ss_dssp             HHHTGGG
T ss_pred             HHHHHHH
Confidence            8877654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.33  E-value=0.015  Score=62.11  Aligned_cols=297  Identities=12%  Similarity=0.116  Sum_probs=157.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH-HHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHh--CC
Q 011316           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG  116 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g  116 (488)
                      +.++++...++.++...++   .-....+++.+.++.+ ..+|.  + ++++..|+.||..+.... ++..+.+..  ..
T Consensus       218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            4677877788888888765   3346778888899988 47664  3 789999999999988632 332222211  11


Q ss_pred             CHHHHHHhh-------------CCCCHHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccccHhHH
Q 011316          117 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHAKLSML  176 (488)
Q Consensus       117 ~i~~L~~lL-------------~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~~~~v~  176 (488)
                      ++..+..++             ...+.+.....++.+..+....       |+.+..+..  ++..++.+- ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            122222222             1123455555666666554321       111111111  222333333 45577777


Q ss_pred             HHHHHHHHHhhcC----CCC----C-------------ChhhhhchHHHHHH----hhccCCh-----------------
Q 011316          177 RNATWTLSNFCRG----KPQ----P-------------LFEQTRPALPALER----LIHSNDD-----------------  214 (488)
Q Consensus       177 ~~a~~~L~~l~~~----~~~----~-------------~~~~~~~~~~~L~~----ll~~~~~-----------------  214 (488)
                      ..+...-..+...    .+.    .             ......+++..+..    -+..++.                 
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            7766554444321    110    0             01112233333333    3332210                 


Q ss_pred             --------hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhH-HHhhC
Q 011316          215 --------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQ-CIINH  283 (488)
Q Consensus       215 --------~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~  283 (488)
                              ++...++..+.++..  .+...     -+.+.+.+.+..  .++...++++++++.++..-..... .++. 
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-  520 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-  520 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred             hcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence                    112223222222221  11111     123444444443  3578889999999999854432211 2221 


Q ss_pred             CChHHHHHHhcccc----hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316          284 QALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       284 ~~~~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .+++.|+.+..++.    ...++...+|+++....   .+++..    + .++..|++.+.++++.|+..|+.++..++.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L----~-~vl~~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL----K-TVVNKLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH----H-HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH----H-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            45666666664431    23355566789988765   233322    2 257778888888899999999999999987


Q ss_pred             CCC
Q 011316          357 GGS  359 (488)
Q Consensus       357 ~~~  359 (488)
                      .+.
T Consensus       596 ~C~  598 (1073)
T 3gjx_A          596 KCR  598 (1073)
T ss_dssp             HTG
T ss_pred             HHH
Confidence            663

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.32  E-value=0.001  Score=58.48  Aligned_cols=181  Identities=13%  Similarity=0.056  Sum_probs=118.9

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh---hHHH
Q 011316          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCI  280 (488)
Q Consensus       204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~  280 (488)
                      .+...+-+.|.+-+..++..|.......+......++ .+++.+.-.+.+.++.+...++.+|..+...-...   ....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3455555667777777777777655433321111111 12232222334678888888888888875321110   0000


Q ss_pred             hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011316          281 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  359 (488)
Q Consensus       281 ~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  359 (488)
                      -..-++|.|+.-+.++ ...+|..+-.++..+.. .++.        .+++.++.-+.+.+..+|..++..+..+.....
T Consensus       129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            0124688999999888 78899888877776654 2222        257778888888999999999999999975322


Q ss_pred             HHHHHHHHHCCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          360 NEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       360 ~~~~~~l~~~~~~---~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      ..      ....+   +.+..++.++|..||..|+.++..+...
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            22      23468   9999999999999999999999888654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.32  E-value=0.023  Score=51.05  Aligned_cols=202  Identities=15%  Similarity=0.095  Sum_probs=145.1

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch----hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.+...+.+..|+..|..-+.+.|..+..+..++.+....    ....+..  -.+.+..++..-.++++-..+...|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4466678899999999888888999999999999885442    2223332  233333333333345666667777777


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC--CChHHHHhhcCCCCHHHHHH
Q 011316          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~~~~L~~ll~~~~~~v~~~  389 (488)
                      ++.+ ......++..+.+..+.+.++.++.++...|..++..+......-...++...  ........++.+++.-.+.+
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            7765 67777788888899999999999999999999999998776433333333321  34667778999999999999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011316          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  449 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~  449 (488)
                      ++..|+.++..-.....         ....+.+..-++.+..++.+++..++..|-.+..
T Consensus       229 SlKLLgelLldr~N~~v---------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK  279 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  279 (341)
T ss_dssp             HHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHH---------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence            99999999866444332         3555555666888888889999888877776643

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.12  E-value=0.026  Score=48.36  Aligned_cols=186  Identities=11%  Similarity=0.133  Sum_probs=125.0

Q ss_pred             ChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCCc-----chHhHHHHHHhHhhcCCchhhHH
Q 011316          213 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      +++.++.|+.-|+.--+..++....+..+ |.+..|++=       +..+.-     .-...|+..+..++. .++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45568888777766544444554445544 555555332       222211     112345555566665 5667778


Q ss_pred             HhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316          280 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      +++.++.-.+..+|+..    ..+.+|-.+.++++.++. ++++.+..+.+.+++|..++.++.++.-.|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            88989888888888553    146789999999999998 6788999999999999999999999999999999999998


Q ss_pred             ccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316          355 TSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       355 ~~~~~~~~~~~l~~~--------~~~~~L~-~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ....  ....++...        .++..++ .+.+++++.+.++++.+..++....
T Consensus       173 L~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          173 LLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             hccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            8642  444443321        1222222 3445777888888887777775443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.96  E-value=0.00088  Score=58.46  Aligned_cols=90  Identities=20%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             HHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316          206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  285 (488)
Q Consensus       206 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  285 (488)
                      ..+++++++.|+..++..   +               ..+.+..++.++++.||..+...+                  .
T Consensus       152 ~~l~~D~d~~VR~~aa~~---l---------------~~~ll~~ll~D~d~~VR~aaa~~l------------------~  195 (244)
T 1lrv_A          152 FRFMRDEDRQVRKLVAKR---L---------------PEESLGLMTQDPEPEVRRIVASRL------------------R  195 (244)
T ss_dssp             GGTTTCSCHHHHHHHHHH---S---------------CGGGGGGSTTCSSHHHHHHHHHHC------------------C
T ss_pred             HHHHcCCCHHHHHHHHHc---C---------------CHHHHHHHHcCCCHHHHHHHHHhC------------------C
Confidence            345556666666666553   1               013344556667777777666542                  1


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  351 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL  351 (488)
                      .+.+..++.++ ++.||..++..+.                  .+.|..+ .++++.|+..+...|
T Consensus       196 ~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          196 GDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            23466667777 7788877776643                  2444444 777888888776554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.95  E-value=0.00041  Score=60.59  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=62.3

Q ss_pred             HhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316          166 QFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       166 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      .+.+++++.|+..++..   +.              .+.+..+++++++.|+..+...+                  ..+
T Consensus       153 ~l~~D~d~~VR~~aa~~---l~--------------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~  197 (244)
T 1lrv_A          153 RFMRDEDRQVRKLVAKR---LP--------------EESLGLMTQDPEPEVRRIVASRL------------------RGD  197 (244)
T ss_dssp             GTTTCSCHHHHHHHHHH---SC--------------GGGGGGSTTCSSHHHHHHHHHHC------------------CGG
T ss_pred             HHHcCCCHHHHHHHHHc---CC--------------HHHHHHHHcCCCHHHHHHHHHhC------------------CHH
Confidence            33377888888888764   11              12344677888999999888652                  125


Q ss_pred             HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      .+..++.++++.||..+...++                  .+.+..+ +++ ++.||..+...|
T Consensus       198 ~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          198 DLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence            6778889999999999988753                  2344445 666 899998886544

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.69  E-value=0.2  Score=44.95  Aligned_cols=292  Identities=14%  Similarity=0.126  Sum_probs=169.7

Q ss_pred             hhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHH
Q 011316          141 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTD  219 (488)
Q Consensus       141 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~  219 (488)
                      .++..++....+-++..+++..+...+ +-.+.++.+..+..|...+... .-...-....+|.++..+. +++.++...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence            344455555677788888999888888 7788899999999998887654 1122233677888888886 678999999


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-------CCcchHhHHHHHHhHhhcC------------C-------
Q 011316          220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTG------------D-------  273 (488)
Q Consensus       220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~------------~-------  273 (488)
                      ....|+|+..+.....+..+..+.+..|......       .+..-+..+|.+++|-.+.            +       
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G  424 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG  424 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence            9999999999887777777888999988877533       1233445566666654421            0       


Q ss_pred             ---chhhHHHhhCCChHHHHHHhcccc-----hhhHHHHHHHHHHHHhcCC---HHHH----HHHHHcCChHHHHHHHh-
Q 011316          274 ---DMQTQCIINHQALPCLLDLLTQNY-----KKSIKKEACWTISNITAGN---VNQI----QAIIEAGIIGPLVNLLL-  337 (488)
Q Consensus       274 ---~~~~~~~~~~~~~~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~l~~L~~ll~-  337 (488)
                         ..+...+++..++..++..|+-..     -.++|...++.+.-+.+..   .+..    +...+.+.+..++-.+. 
T Consensus       425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW  504 (619)
T 3c2g_A          425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW  504 (619)
T ss_dssp             HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence               123334556677778887775431     2345555554444443321   0100    00111223333333222 


Q ss_pred             ---cC-C-------hhHHHHHHHHHHHhccCC-CHHH-HHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 011316          338 ---NA-E-------FEIKKEAAWAISNATSGG-SNEQ-IKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       338 ---~~-~-------~~v~~~a~~aL~~l~~~~-~~~~-~~~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~  402 (488)
                         .+ +       ..+.+.+...|..+...+ +..+ ...+   -.+..=.++|+..  .+.....++..=.++++.++
T Consensus       505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP  581 (619)
T 3c2g_A          505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP  581 (619)
T ss_dssp             HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence               11 1       123455555565555433 2221 1111   2233444555543  35555555555555655544


Q ss_pred             hhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316          403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       403 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      .....            -  .-.-..++-+.+|.|+++.+.|..++.++
T Consensus       582 ~~Ad~------------W--~i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          582 TRADI------------W--TIDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             THHHH------------S--CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             chhcc------------c--eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            32110            0  00123456678999999999999988876

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.57  E-value=0.058  Score=50.87  Aligned_cols=149  Identities=17%  Similarity=0.119  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011316          128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  207 (488)
Q Consensus       128 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~  207 (488)
                      +++..++.|+..+.....+-|+.++.     ++..++.++ .+.|..+|..|+..|..+|.+      .....+...|.+
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57999999999999999888877655     567889998 888999999999999999987      336788899999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCCh
Q 011316          208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL  286 (488)
Q Consensus       208 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~  286 (488)
                      +|.++++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..=... ..+....-.+.-+.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99998887777777777777655532        2334444444445778898888877554432 11111122233345


Q ss_pred             HHHHHHhccc
Q 011316          287 PCLLDLLTQN  296 (488)
Q Consensus       287 ~~L~~lL~~~  296 (488)
                      ..+.++|++-
T Consensus       180 ~~ikK~L~DV  189 (507)
T 3u0r_A          180 TESKKVLEDV  189 (507)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHhccc
Confidence            5566666544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.56  E-value=0.18  Score=43.33  Aligned_cols=194  Identities=14%  Similarity=0.068  Sum_probs=120.9

Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHh-------cccc---hhhHH-HHHHHHHHHHhcCCHHHHHH
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLL-------TQNY---KKSIK-KEACWTISNITAGNVNQIQA  322 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL-------~~~~---~~~v~-~~a~~~L~nl~~~~~~~~~~  322 (488)
                      +++.|+.|+.-|+.=-...+...-.+. ..|.+..+++=+       ..+.   ...-| ..|...+..++++ ++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence            344577777666553333333333333 234444443322       1110   11122 2333444455554 888889


Q ss_pred             HHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316          323 IIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       323 l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                      +++..+.-.|..+++..     -+.+|..++.+++.++...+++...++.+.+.++...+.++.+++-.+..|..++.++
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            99988888888888765     2568999999999999999999999999999999999999999998888999999999


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +..+.........  .++|.....-.|  .-+..+..++++++-+...++.-++.+
T Consensus       173 L~dd~GL~YiC~t--~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          173 LLDDTGLAYICQT--YERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HHSHHHHHHHTSS--HHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             hccchhHHHHHcc--HHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            8765543322110  111222211111  123345577788876665555555443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.53  E-value=0.56  Score=44.34  Aligned_cols=291  Identities=12%  Similarity=0.050  Sum_probs=167.1

Q ss_pred             CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHH
Q 011316           85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  164 (488)
Q Consensus        85 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~  164 (488)
                      ++ +..+..|+..+......-|+..+.-     +..++.++++++..+|..|++.|..+|.+ . ....     +...|.
T Consensus        40 g~-~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~  106 (507)
T 3u0r_A           40 GG-TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILT  106 (507)
T ss_dssp             SC-HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHH
Confidence            34 7999999999999999888887754     78999999999999999999999999987 3 2222     356788


Q ss_pred             HHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-CchhHHHHHHhCC
Q 011316          165 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGV  243 (488)
Q Consensus       165 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~  243 (488)
                      ++| +..++.-...+-.+|..+...+       -.+.+..+...+.++++.+++.++..|..-... ..+....-.+.-+
T Consensus       107 QlL-qtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLL-QTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHT-TCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHH-hccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            888 6666666666667777666543       135566666666667899999998888653321 1111111222234


Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-hhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHH----HH
Q 011316          244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTIS----NI  312 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~----nl  312 (488)
                      +..+.+.|.+....--...+.+|..+-.... ...+.     +++.+....      ... +.+.-...+.++.    -+
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHh
Confidence            4556666655443333444555544443222 11111     222333321      112 2222222222222    22


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC-----
Q 011316          313 TA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD-----  383 (488)
Q Consensus       313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~-----  383 (488)
                      +.  ++......+.+. ++|.+-.+-... .++.+...+.+++.++..+. .+....++. -+...|..++-.+.     
T Consensus       253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~  330 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAEN  330 (507)
T ss_dssp             BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC-----
T ss_pred             ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCcccccc
Confidence            22  344555555554 777554332221 23478888999999987765 222222211 13444444443221     


Q ss_pred             --------H----HHHHHHHHHHHHHHHhhhhh
Q 011316          384 --------P----RIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       384 --------~----~v~~~al~~L~~l~~~~~~~  404 (488)
                              +    .-++..+.+++.+....+..
T Consensus       331 ~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~  363 (507)
T 3u0r_A          331 GENAGNEEPKLQFSYVECLLYSFHQLGRKLPDF  363 (507)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred             cccccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence                    1    23566777888887655443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.42  E-value=0.023  Score=49.23  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=98.4

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC----HH-HHH------H
Q 011316          298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----NE-QIK------F  365 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~------~  365 (488)
                      +......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++...+    .+ ...      .
T Consensus        67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            446677888888888754 555666654 5578888888888899999999988888776543    11 111      1


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011316          366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  444 (488)
Q Consensus       366 l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a  444 (488)
                      ..+..-...+++.++ ..+.+.+..++..+..++...+....      .-..+..|...|..+.+..+....++++..+-
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence            123345667888777 45567888888888888776543321      12257788899999999999888888886554


Q ss_pred             H
Q 011316          445 V  445 (488)
Q Consensus       445 ~  445 (488)
                      .
T Consensus       220 ~  220 (233)
T 2f31_A          220 C  220 (233)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.33  E-value=0.12  Score=44.06  Aligned_cols=145  Identities=17%  Similarity=0.082  Sum_probs=104.2

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhC-CCchhH
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~-~~~~~~  151 (488)
                      .++....+.+++. .++|..|+..|+.. ...         ...++.+.. +-..++..+++.+..++..++. ..++  
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            3445556667777 89999999998887 311         123666666 5556889999999999999874 3333  


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                            ..++.+.... .+++..+++.|+..+.--+.. + ........+++.+-.+..+++.-|+..+.+.|..++..+
T Consensus       139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                  1455566666 888999999999887654432 1 122233457777777788889999999999999999998


Q ss_pred             chhHHHHHH
Q 011316          232 NDKIQAVIE  240 (488)
Q Consensus       232 ~~~~~~~~~  240 (488)
                      ++....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665555

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.21  E-value=0.072  Score=45.33  Aligned_cols=143  Identities=10%  Similarity=0.053  Sum_probs=101.0

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhcc-CCchhHHHHH
Q 011316          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI  239 (488)
Q Consensus       162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~  239 (488)
                      .+...|.++...++|..|+.+|..+ .        .....++.+.. +..+++..|++.+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            4555555677779999999988877 2        12457777776 5556789999999999998874 3332      


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011316          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  319 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  319 (488)
                        ..++.+.....++++.+|+.|...+.-.+.. +....  -...+++.+-.+..++ +.-||+...|.|..++..+|+-
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              2567788899999999999998877554432 11100  0112345555555666 8999999999999999988987


Q ss_pred             HHHHHH
Q 011316          320 IQAIIE  325 (488)
Q Consensus       320 ~~~l~~  325 (488)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.98  E-value=2.4  Score=46.37  Aligned_cols=299  Identities=8%  Similarity=0.043  Sum_probs=166.9

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCC----
Q 011316           32 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG----  104 (488)
Q Consensus        32 i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~----  104 (488)
                      +..+++.+.++  +...|.+|-..|.++-...           .....+...|. .+.++.+|..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            44455444444  6778888888888754321           23344444443 333389999999999887642    


Q ss_pred             -CchhhHHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011316          105 -TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  179 (488)
Q Consensus       105 -~~~~~~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a  179 (488)
                       .++.+..+ +..+++.+......   .+..++...+.++..++... |...     .+.++.++..+ .. ++.....+
T Consensus        82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~-~~-~~~~~e~~  153 (1204)
T 3a6p_A           82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLS-KQ-GETQTELV  153 (1204)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHH-HT-CHHHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHh-cC-CHHHHHHH
Confidence             23333333 33445554443221   46889999999999887432 1100     13466677776 32 44556778


Q ss_pred             HHHHHHhhcCC---CCCChhh-----------hhchHHHHHHhhcc-------------------CChhHHHHHHHHHHH
Q 011316          180 TWTLSNFCRGK---PQPLFEQ-----------TRPALPALERLIHS-------------------NDDEVLTDACWALSY  226 (488)
Q Consensus       180 ~~~L~~l~~~~---~~~~~~~-----------~~~~~~~L~~ll~~-------------------~~~~v~~~al~~L~~  226 (488)
                      +.+|..++...   .......           ...+++.+..++++                   ++..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88888876542   1111100           01333444444432                   123466777777776


Q ss_pred             hccCCchhHHHHHHhC--CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc--hhhHHHhhC---CChHHHHHHhc-----
Q 011316          227 LSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINH---QALPCLLDLLT-----  294 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~---~~~~~L~~lL~-----  294 (488)
                      ...--+  ...+.+..  +++.+..++.  ++.++..|+.+|..++....  .....++..   ..+..++..+.     
T Consensus       234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            654332  12233332  6677776665  46799999999999997542  222222221   11234444431     


Q ss_pred             --ccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316          295 --QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       295 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                        +..+.++.+..+..+..+...    ...++.           .++++.++.+..+++..+-..++.....+...
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence              121456666777777766521    222221           13588888888888877777777766656543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.73  E-value=0.056  Score=50.61  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=109.8

Q ss_pred             hhhHHHhhCCChHHHHHHhcc----------cchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhH
Q 011316          275 MQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEI  343 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v  343 (488)
                      ...+.+. .+++..|+.+|..          ..+......++.+|..+... ......++. ...+..|...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            3444444 4566667766632          11346677888888888765 555565554 567889999998889999


Q ss_pred             HHHHHHHHHHhccCCCHHH-HHH----------HHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011316          344 KKEAAWAISNATSGGSNEQ-IKF----------LVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTG  411 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  411 (488)
                      +..++..|..++....++. ...          ..+..-...+++.++. .+.+....++..+..++...+....     
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----  253 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  253 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence            9999999988886543111 111          1234557788888886 5678888888888888776543321     


Q ss_pred             ccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316          412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       412 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  443 (488)
                       .-..+..|...|..+.+..+...+++++..+
T Consensus       254 -R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          254 -RVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             -HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             -HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence             1125777889999999999887778877544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.54  E-value=0.64  Score=40.08  Aligned_cols=139  Identities=12%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCH
Q 011316           50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAV  118 (488)
Q Consensus        50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i  118 (488)
                      .+..|...+.+.+...++.+ ..+++..|++.|..    +      ...+.+..++.||..+.. +....+.+. ..+.+
T Consensus        21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred             HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence            34444444444434445666 45777777777642    1      125678889999999998 555555555 55788


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      ..+...+.++++.++..++..|+.+|..+. .. ...++          +..-..+++..+..+.+.+.+..++..+-.+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999998886553 12 22221          2223555666664444555555555555555


Q ss_pred             hcCC
Q 011316          187 CRGK  190 (488)
Q Consensus       187 ~~~~  190 (488)
                      ....
T Consensus       179 i~~~  182 (233)
T 2f31_A          179 ITPA  182 (233)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            5554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.44  E-value=0.65  Score=41.75  Aligned_cols=173  Identities=12%  Similarity=0.065  Sum_probs=103.9

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH----HHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011316           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP----IFVRLLSS-PTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~----~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~  148 (488)
                      .+..+.+++ +-. .+.+.-++..+.-.+. ++.....+.+...-.    .+...+.+ ..+.-+-.++++++|+.....
T Consensus       104 ~l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          104 QLQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred             HHHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence            345666766 323 4567777888877776 666666665443222    33344433 456678999999999987655


Q ss_pred             hhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHH
Q 011316          149 KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWA  223 (488)
Q Consensus       149 ~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~  223 (488)
                       .+..+..  ....++..+.   .+.+..++..++..+.|++-.. ..........++..+..+++. .+.+....++-+
T Consensus       181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence             4555543  2233444332   3457788888888888887643 111222233455555566653 588999999999


Q ss_pred             HHHhccCCchhHHHHHHh-CCHHHHHHhcCC
Q 011316          224 LSYLSDGTNDKIQAVIEA-GVCPRLVELLRH  253 (488)
Q Consensus       224 L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~  253 (488)
                      |+++...+.+..+ +.+. ++-..+-.....
T Consensus       258 LGtL~~~~~~~~~-lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          258 LGTLISDDSNAVQ-LAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHTTCHHHHH-HHHHTTHHHHGGGGGGC
T ss_pred             HHHHHhCChhHHH-HHHHcCHHHHHHHHHhC
Confidence            9999987654433 4433 443434344433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.34  E-value=1.9  Score=46.41  Aligned_cols=160  Identities=13%  Similarity=0.114  Sum_probs=105.3

Q ss_pred             cHhHHHHHHHHHHHhhc----CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011316          172 KLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  247 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  247 (488)
                      ++.++..+..+++.+..    ..+.........+...+.+.+...+..-+..++.+|+|+...           ..++.+
T Consensus       408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l  476 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI  476 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence            55666767777666643    333333334556666677777778888889999999998652           235566


Q ss_pred             HHhcCC-----C--CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHH
Q 011316          248 VELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQ  319 (488)
Q Consensus       248 ~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~  319 (488)
                      .+++..     .  ...++..|+++|..++...+...        -+.++++.. ...+.++|..|+..|.... .+.. 
T Consensus       477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~-  546 (1056)
T 1lsh_A          477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA-  546 (1056)
T ss_dssp             HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH-
T ss_pred             HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH-
Confidence            666632     1  23577889999999987544333        345777763 2337889999988886432 2233 


Q ss_pred             HHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCH
Q 011316          320 IQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       320 ~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~  360 (488)
                              .+..+...+.. ++.+|.......|.+++....+
T Consensus       547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence                    34445555655 4788888888899999877655

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.22  E-value=1  Score=41.97  Aligned_cols=156  Identities=12%  Similarity=0.108  Sum_probs=102.3

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----------CCChhHHHHHHHHHHHh
Q 011316           33 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNI  101 (488)
Q Consensus        33 ~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~~v~~~a~~~L~~l  101 (488)
                      ...++.|++.. ..-....+..|..-+.+.+...++.++ .+++..|++.|..          ......+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34566666543 222234556666555555445567776 6678888888741          11147888999999999


Q ss_pred             cCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhc
Q 011316          102 ASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFN  168 (488)
Q Consensus       102 ~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~  168 (488)
                      .. +......++ ....+..+...+.+.++.++..++.+|+.+|..+. .. ...++          +..-...++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            98 555555554 55789999999999999999999999999987653 21 22222          2234666777774


Q ss_pred             ccccHhHHHHHHHHHHHhhcCC
Q 011316          169 EHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       169 ~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ...+.+.+..+...+-.+....
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCC
Confidence            4456666666666666666654

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.19  E-value=0.92  Score=49.61  Aligned_cols=283  Identities=11%  Similarity=0.085  Sum_probs=156.9

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCC-----CchhHHHHHhcCCh
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL  160 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i  160 (488)
                      +..|..|-..|..+-. ++         .....+...|  .+.+..+|..|+..|.+....     +++.+..+ +    
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----
Confidence            6778888888877644 22         1233444333  346789999999999987633     22222222 2    


Q ss_pred             HHHHHHhccc------ccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---
Q 011316          161 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---  230 (488)
Q Consensus       161 ~~l~~~l~~~------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~---  230 (488)
                      ..++..+...      .+..++...+.++..++... +...    ..+++.++.++.+ +......++.+|..+++.   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444222      35778888999999988764 4333    4677788888765 556677788888877642   


Q ss_pred             C----chhHHH---HHHh---CCHHHHHHhcCC-------------------CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316          231 T----NDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       231 ~----~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      .    ..+...   .+..   .++..+..++.+                   .+..++..++.++.+...--+  ...+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence            1    111111   1111   222333333322                   123456677777776654222  12233


Q ss_pred             hCC--ChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCChhHHHH
Q 011316          282 NHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKE  346 (488)
Q Consensus       282 ~~~--~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~l~~L~~ll~--------~~~~~v~~~  346 (488)
                      +..  +++.+...+.   ++.++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  6666776654   4578999999999999832  4433333321   01234444432        114566666


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHC-----------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          347 AAWAISNATSGGSNEQIKFLVSQ-----------GCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~-----------~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      .+..+..+..    . ...+++.           ++++.+..+..+++..+...++.....+++.
T Consensus       322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777766652    1 1112211           3466777777777777766666655545443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.15  E-value=0.17  Score=45.50  Aligned_cols=109  Identities=11%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC---chhH
Q 011316           77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS---PKCR  151 (488)
Q Consensus        77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~  151 (488)
                      .+...+.++..+..+..++++++|+.. ++..+..+...  .+++.+...+.+.+..++..++.++.|++...   ... 
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-  228 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-  228 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-
Confidence            344555544447789999999999998 77777777643  34455555555678999999999999997421   111 


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      +..  ...+..+...+....|.+....++.+|+++...
T Consensus       229 ~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          229 EGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             hHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            111  113344445554556888888899999998865

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.99  E-value=0.39  Score=43.10  Aligned_cols=161  Identities=14%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc
Q 011316          218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY  297 (488)
Q Consensus       218 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~  297 (488)
                      ..+...| ++.-++++.+.-+++.+++..+......++.++.++.+..|...+.... ....-+ .+.++.++..+.-..
T Consensus       261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTHHHHHHHHHHHCC
T ss_pred             HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-cccchHHHHHhccCC
Confidence            3344433 4445566788889999999999999999999999999999988876322 211111 256788888775444


Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------ChhHHH-------HHHHHHHHhcc------C
Q 011316          298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFEIKK-------EAAWAISNATS------G  357 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~~v~~-------~a~~aL~~l~~------~  357 (488)
                      +.++.....+.|+|...+.....+.-+.+|.++.|...+...       +..-++       +++.++.|+.-      +
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            888999999999999998888777788899999999987653       222333       44444555431      1


Q ss_pred             C--------CHHHHHHHHHCCChHHHHhhcCC
Q 011316          358 G--------SNEQIKFLVSQGCIKPLCDLLNC  381 (488)
Q Consensus       358 ~--------~~~~~~~l~~~~~~~~L~~ll~~  381 (488)
                      +        +..+.-.+++.++++.|+.+|+-
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~  449 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSC  449 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1        22344445666778888888764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.67  E-value=0.37  Score=45.11  Aligned_cols=139  Identities=14%  Similarity=0.081  Sum_probs=97.5

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHH----------
Q 011316          298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKF----------  365 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~----------  365 (488)
                      +......++.+|..+... ......++. .+.+..+...+.++.+.++..++..|..++....++. ...          
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            456677888888888765 445555554 5678888888888889999999988888776543111 111          


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316          366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       366 l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  443 (488)
                      ..+..-+..+++.++ +.+.+....++..+..++...+....      ....+..|...|..+.+..+....++++..+
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            123345667777776 45677888888888888776554321      1225788899999999999988888887655

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=94.51  E-value=3  Score=38.66  Aligned_cols=89  Identities=10%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011316           45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  124 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  124 (488)
                      ..++..+..+.+++-..+..     .-.++++.++.+-.+++ .++|...+..|...+....+...     ..++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888888888875543222     22468999999988888 89999999999988875555433     346788888


Q ss_pred             hCCCCHHHHHHHHHHHhhhh
Q 011316          125 LSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus       125 L~~~~~~~~~~a~~~L~~l~  144 (488)
                      ++++++.+...++.+.+++.
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            88889999998888887763

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.39  E-value=2.3  Score=36.96  Aligned_cols=101  Identities=6%  Similarity=0.060  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +-.+++..+....+.+...+....+++-..+....     ..+++.++.+..+++ .++|...+..+...+...++....
T Consensus        17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~   90 (257)
T 3gs3_A           17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH   90 (257)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444443347899999999997665422222     246777888776766 899999999999888655544333


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 011316          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV  143 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l  143 (488)
                           .++.|..+++++++.+.+.++.+..++
T Consensus        91 -----~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           91 -----VINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             -----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                 468888889888999999888877776

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.95  E-value=3  Score=44.86  Aligned_cols=166  Identities=15%  Similarity=0.176  Sum_probs=109.5

Q ss_pred             HHHHHHhhCC----CCHHHHHHHHHHHhhhh----CCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHh
Q 011316          118 VPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       118 i~~L~~lL~~----~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l  186 (488)
                      +..+..++.+    .++.+++.++-+++.++    ...+.|..     ..++.+.+.+.   ...+..-+..++.+|+|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            5666667765    56788888888887775    23222211     12444444432   334566778899999998


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc--CCCCcc
Q 011316          187 CRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPS  257 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~  257 (488)
                      ...          ..++.+.+++..       ....++..|+++|..+....+...+        +.++++.  ...+++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            763          466777777642       1356888999999999876543333        4566666  346788


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      +|..|+..|...   +|..       ..+..+...+....+..|+......|.+++...
T Consensus       530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            999888877432   2322       235667777777558899999999999998843

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.62  E-value=4.1  Score=37.99  Aligned_cols=140  Identities=11%  Similarity=0.136  Sum_probs=89.8

Q ss_pred             HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----CC------ChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCH
Q 011316           50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----DD------FPQLQFEAAWALTNIASGTSENTRVVI-DHGAV  118 (488)
Q Consensus        50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i  118 (488)
                      .+..|...+.+.+...++.+. .+++..|+..|..    ..      ....+..++.||..+.. +....+.+. ..+.+
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence            344444444444344455564 5677777777641    11      25678899999999998 554555444 55789


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l  186 (488)
                      ..+...+.++++.++..++..|..+|..+. .. ...++          +..-...++..+..+.+.+.+..++..+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999998886553 21 22221          2234556777775455666666666666666


Q ss_pred             hcCCC
Q 011316          187 CRGKP  191 (488)
Q Consensus       187 ~~~~~  191 (488)
                      ....+
T Consensus       183 v~~~~  187 (386)
T 2bnx_A          183 ITPAE  187 (386)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            66543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=93.12  E-value=0.14  Score=41.24  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~  449 (488)
                      ++..|..-|.+.++.++..|+..|..+++.+...           |...+.....++.+..+... .+++|++++..++.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~-----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~  121 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI-----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV  121 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH-----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            4666777788899999999999999998876532           56566666667777777654 67899999999999


Q ss_pred             HhcCCCCC
Q 011316          450 TYWVEEDE  457 (488)
Q Consensus       450 ~~~~~~~~  457 (488)
                      .+...-..
T Consensus       122 ~W~~~f~~  129 (163)
T 1x5b_A          122 EWSEEFQK  129 (163)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhcC
Confidence            88776554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=92.38  E-value=0.93  Score=40.05  Aligned_cols=136  Identities=14%  Similarity=0.084  Sum_probs=91.1

Q ss_pred             cchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHH
Q 011316          256 PSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPL  332 (488)
Q Consensus       256 ~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L  332 (488)
                      ......|+..|.-++.......+.+- +...+..|+ +.... .+.++..|+.+++...+.+|+....+.+  ..++..+
T Consensus        42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            33566788888888875544443332 323333333 22333 6679999999999999999999988876  3456666


Q ss_pred             HHHHhc-------CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 011316          333 VNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK  399 (488)
Q Consensus       333 ~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~  399 (488)
                      +.-|..       ....+++.-+.+|.-|+.... ..     ....+..|.+++...  ++.++..++..+..++.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            655443       234566777888888877531 11     135677777777766  88999999999988875

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.02  E-value=0.48  Score=36.76  Aligned_cols=78  Identities=13%  Similarity=0.225  Sum_probs=57.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh-ccHHHHHHhhcCCC--------HHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHDN--------TEIY  441 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~l~~l~~~~~--------~~v~  441 (488)
                      +++.|.+-|+.+++.++..+|.+|..++..+...           |...+.+. ..++.+.++...++        ..|+
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR  118 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR  118 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence            5778888888889999999999999998765432           55555433 34555555544433        7799


Q ss_pred             HHHHHHHHHhcCCCCCCC
Q 011316          442 EKAVKILETYWVEEDEDE  459 (488)
Q Consensus       442 ~~a~~~l~~~~~~~~~~~  459 (488)
                      .+|..+++-+|+++..+.
T Consensus       119 ~~AkEl~~ll~d~~~~~~  136 (140)
T 1vdy_A          119 ETAHETISAIFSEENGSG  136 (140)
T ss_dssp             HHHHHHHHHHTCCSSCCC
T ss_pred             HHHHHHHHHHhCcCCCCC
Confidence            999999999999887743

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=90.75  E-value=6  Score=36.75  Aligned_cols=259  Identities=13%  Similarity=0.066  Sum_probs=121.0

Q ss_pred             CChhHHHHHHHHHHHhcCC---CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHH
Q 011316           86 DFPQLQFEAAWALTNIASG---TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP  162 (488)
Q Consensus        86 ~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  162 (488)
                      .+|.++. +-..+..+...   ++......++...+..|+.++.++|+.=|...-.+|.++-..-...|..+.. ..-..
T Consensus        97 sWpHLql-VYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~inni  174 (403)
T 3fga_B           97 AWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNI  174 (403)
T ss_dssp             THHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHH
T ss_pred             CcHHHHH-HHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHH
Confidence            3455543 23344444331   2333344455567888999999999999999888888875433333333221 11123


Q ss_pred             HHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHH
Q 011316          163 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIE  240 (488)
Q Consensus       163 l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~  240 (488)
                      +.+.+.......=....+.+++.+..+-... ......-....|+.+-+...-.. -.....++......++.....++ 
T Consensus       175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-  253 (403)
T 3fga_B          175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-  253 (403)
T ss_dssp             HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-
Confidence            3333322221122234555555555544211 12222333445555555443222 23344444444444443333222 


Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH-----HHHhc
Q 011316          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI-----SNITA  314 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L-----~nl~~  314 (488)
                          ..+++.=-..++.-...-+.-+..+...- +.....+. ..++..+...+.++ +..|-..|+...     .++..
T Consensus       254 ----~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~  327 (403)
T 3fga_B          254 ----MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLIS  327 (403)
T ss_dssp             ----HHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHH
T ss_pred             ----HHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHH
Confidence                11221111122222222233344444322 22222221 23566677777777 777877776543     22222


Q ss_pred             CCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccC
Q 011316          315 GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       315 ~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~  357 (488)
                      .+...+-.+    +++.|.+..... +..++..+..++.-+...
T Consensus       328 ~n~~~IlPi----i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          328 DNAAKILPI----MFPSLYRNSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             TTHHHHHHH----HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHH----HHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            222221111    233343333333 778888888888887653

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.55  E-value=3.1  Score=36.81  Aligned_cols=148  Identities=11%  Similarity=0.091  Sum_probs=97.0

Q ss_pred             chHHHHHHhhccC------ChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316          200 PALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       200 ~~~~~L~~ll~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .-+..+..+++++      +......++..|..++.....-.+ +++  ...+..|+ +.....+.+++.|.++|+...+
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~K-I~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR   99 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYK-IITHEFALLANLS-LNENLPLTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHH-HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhH-HHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence            3444555666665      455678888888888866543333 443  34444444 3344566799999999999999


Q ss_pred             CCchhhHHHhh--CCChHHHHHHhcc-------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--C
Q 011316          272 GDDMQTQCIIN--HQALPCLLDLLTQ-------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--E  340 (488)
Q Consensus       272 ~~~~~~~~~~~--~~~~~~L~~lL~~-------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~  340 (488)
                      .+|.....+.+  ..++..+..-|..       . ...+.+.-+.+|.-|...+..    + ....+..|.+++...  +
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d  173 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKD  173 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTC
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCC
Confidence            99988877764  3444444444422       2 335666777778777775321    1 234678888888777  8


Q ss_pred             hhHHHHHHHHHHHhc
Q 011316          341 FEIKKEAAWAISNAT  355 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~  355 (488)
                      +.+|..++..+..+.
T Consensus       174 ~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          174 KQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            899999999888876

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=88.37  E-value=15  Score=34.83  Aligned_cols=236  Identities=13%  Similarity=0.055  Sum_probs=119.7

Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                      +......++...+..|+.++.++++.-|...-.+|..+-..-...|..+.. ..-..+.+.+.......=....+..++.
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            334455556678899999999999999999888887775433333333322 1222344444222222223456677777


Q ss_pred             hhcCCCCC-ChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHH
Q 011316          186 FCRGKPQP-LFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL  263 (488)
Q Consensus       186 l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  263 (488)
                      +..+-... ......-....|+.+.+...-.. -.....++......++.....++     ..|++.=-..++.-...-+
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL  305 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFL  305 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----HHHHHhCCCCCchHHHHHH
Confidence            77665222 22233334455556655443222 22334444444444443333222     2222211112221122233


Q ss_pred             HHHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316          264 RTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       264 ~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      .-+..+.... +.....+. ..++..+-..+.++ +..|-..|+....     ++...+..        .++|.+...+.
T Consensus       306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~--------~IlPii~p~L~  375 (449)
T 2npp_B          306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFPSLY  375 (449)
T ss_dssp             HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchh--------hhHHhhHHHHH
Confidence            3344444322 22222222 23566677777887 7778777764432     22222222        24566666553


Q ss_pred             c----C-ChhHHHHHHHHHHHhccC
Q 011316          338 N----A-EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       338 ~----~-~~~v~~~a~~aL~~l~~~  357 (488)
                      .    . +..++..+..++.-+...
T Consensus       376 ~~s~~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          376 RNSKTHWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             SCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            2    2 677888888888877654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=88.28  E-value=1.5  Score=34.54  Aligned_cols=75  Identities=15%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..|+..|..+++.+...           |...+.+...++.|..+...      .+++|+++.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  107 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV  107 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence            4667777778999999999999999998876533           66777777778888888653      478999999


Q ss_pred             HHHHHHhcCCCC
Q 011316          445 VKILETYWVEED  456 (488)
Q Consensus       445 ~~~l~~~~~~~~  456 (488)
                      ..++..+...-.
T Consensus       108 l~li~~W~~~f~  119 (148)
T 1mhq_A          108 IEILFSWTVWFP  119 (148)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcC
Confidence            999988776543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=88.10  E-value=1.3  Score=34.45  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=57.4

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      ++..|..-+.+.++.++..|+..|..+++.+...           |...+.+...++.+..+....+++|+++...++..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~  111 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE  111 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            4667777788889999999999999888776432           45555555566667777667789999999999998


Q ss_pred             hcCCCCC
Q 011316          451 YWVEEDE  457 (488)
Q Consensus       451 ~~~~~~~  457 (488)
                      +...-..
T Consensus       112 W~~~f~~  118 (140)
T 3ldz_A          112 WTDEFKN  118 (140)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhCC
Confidence            7765443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=87.80  E-value=2.2  Score=34.51  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~a  444 (488)
                      ++..|..-+.+.++.++..|+..|..+++.+...           |...+.+...++.|..+..      ..+.+|++++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  119 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  119 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            4667777788899999999999999999886533           5666777777777888764      2468999999


Q ss_pred             HHHHHHhcCCC
Q 011316          445 VKILETYWVEE  455 (488)
Q Consensus       445 ~~~l~~~~~~~  455 (488)
                      ..++..+...-
T Consensus       120 l~li~~W~~~f  130 (171)
T 1juq_A          120 IELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            99998766543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=87.28  E-value=1.2  Score=34.65  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=58.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      ++..+.+-+.++++.++..|+..|-.++.++.......+.+..++..|..+++..++.|+..++..+..-..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            466677778888999999999999999999888777676666777778888777788999998888876543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=87.02  E-value=2.6  Score=33.15  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=58.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..|+..|..+++.+...           |...+.....++.|..+..      ..+++|+++.
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~-----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  117 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI  117 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence            4667777778899999999999999998876643           5666777777888888864      3579999999


Q ss_pred             HHHHHHhcCCC
Q 011316          445 VKILETYWVEE  455 (488)
Q Consensus       445 ~~~l~~~~~~~  455 (488)
                      ..++..+...-
T Consensus       118 l~li~~W~~~f  128 (149)
T 3g2s_A          118 LELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99998876654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=86.98  E-value=0.88  Score=36.56  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=57.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+.|++.++.+++.|+..|-.+..+-.......+....++..|++++.....+.|+..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            56777888889999999999999999988875444455666677888888888764448899998887766654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=85.63  E-value=1.6  Score=34.42  Aligned_cols=71  Identities=8%  Similarity=-0.072  Sum_probs=58.3

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL  398 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~  398 (488)
                      ++..|.+-++++++.++..|+..|-.++.++.......+.+..++..|..++..      .++.|+..++..+..-.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            466677778889999999999999999999988888888888889999988864      36788888877766543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=84.13  E-value=1.6  Score=34.34  Aligned_cols=73  Identities=8%  Similarity=-0.047  Sum_probs=60.4

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~  400 (488)
                      ++..|.+-+++.++.++..|+..|-.++.++.......+....++..|+.++..      .++.|+..++..+..-...
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            466677778888999999999999999999998888888777888889988863      5678999988888766543

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=83.26  E-value=19  Score=34.04  Aligned_cols=228  Identities=11%  Similarity=0.069  Sum_probs=123.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC----
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT----  105 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~----  105 (488)
                      .-+..|+..+.|+|+..|..--..|..+-.+-  ...+..+...+-..+.+.+.......-....+++++.+..+-    
T Consensus       162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL  239 (449)
T 2npp_B          162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL  239 (449)
T ss_dssp             HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC
Confidence            56778999999999999999888888875543  223333333344455555543332344456788888887643    


Q ss_pred             -chhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316          106 -SENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       106 -~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L  183 (488)
                       ++.+..+     ...|+.+.+... ......-..++..+...++.....     ++..+++.- ..+++.-...-+.-+
T Consensus       240 Keehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~el  308 (449)
T 2npp_B          240 KEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNEL  308 (449)
T ss_dssp             CHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHH
T ss_pred             cHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHH
Confidence             2333222     234444444432 222233445555555444443222     233344333 233333223333334


Q ss_pred             HHhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCC-----C
Q 011316          184 SNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-----P  254 (488)
Q Consensus       184 ~~l~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-----~  254 (488)
                      ..+...-+.... .....+...+...+.+++-.|.+.|+....|     +.. ..++..   .+++.+...|..     =
T Consensus       309 eeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~HW  382 (449)
T 2npp_B          309 EEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKTHW  382 (449)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHHhc
Confidence            444433222222 2335677778888889999998888755433     111 112221   345666665522     1


Q ss_pred             CcchHhHHHHHHhHhhcCCchh
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      +..++..+..++..+...++..
T Consensus       383 n~~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          383 NKTIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             STTHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCHHH
Confidence            4678888988888887766543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=82.53  E-value=23  Score=30.63  Aligned_cols=131  Identities=16%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011316          174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  253 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  253 (488)
                      +.+...+.-...++...   .......+++.++.+..+.+.+++......+...+....+...     ..++.|..++.+
T Consensus        30 ~~kl~~L~qa~el~~~~---dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d  101 (257)
T 3gs3_A           30 STKCELLAKVQETVLGS---CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD  101 (257)
T ss_dssp             HHHHHHHHHHHHHHTTT---TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcc---CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence            35555555555655443   1235577888888887778899999999999888855443322     567788888888


Q ss_pred             CCcchHhHHHHHHhHhhcC-------Cch---hhHHHhh--CCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316          254 PSPSVLIPALRTVGNIVTG-------DDM---QTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~-------~~~---~~~~~~~--~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      +++.+...++.+.+++-..       ++.   ......+  ..+-..++.++++. +..+|..+...+..+.
T Consensus       102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence            8888888888777766421       111   0111111  12334555666666 7777777776666654

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=81.49  E-value=1.9  Score=34.96  Aligned_cols=71  Identities=8%  Similarity=-0.030  Sum_probs=57.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL  398 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~  398 (488)
                      ++..|.+-++++++.++..|+..|-.++.++.......+.+..++..|+.++..      .+..|+..++..+..-.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            456677788889999999999999999999877777777777888888888862      35788888887776543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.42  E-value=1.1  Score=38.35  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|.++++....+.++..++..+...+.
T Consensus        45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  118 (226)
T 3zyq_A           45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH  118 (226)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            56777888899999999999999999988765444455566667777888888654447899988888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-113
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-93
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-46
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-23
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-21
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	9e-13
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-10
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	8e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	4e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.001
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  342 bits (876), Expect = e-113
 Identities = 248/437 (56%), Positives = 308/437 (70%), Gaps = 6/437 (1%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
                 + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+ 
Sbjct: 70  FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 129

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
            +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNV
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 189

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPAL 202
           AGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     AL
Sbjct: 190 AGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248

Query: 203 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 262
           P L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PA
Sbjct: 249 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 308

Query: 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 322
           LR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN  QIQA
Sbjct: 309 LRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQA 367

Query: 323 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLN 380
           +I+A +I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL 
Sbjct: 368 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 427

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
             D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +I
Sbjct: 428 IADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKIFNCQQNENDKI 486

Query: 441 YEKAVKILETYWVEEDE 457
           YEKA KI+ETY+ EE++
Sbjct: 487 YEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  287 bits (734), Expect = 5e-93
 Identities = 203/427 (47%), Positives = 282/427 (66%), Gaps = 12/427 (2%)

Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K   P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325
           +GNIVTG D QTQ +I+  AL     LL  N K +I+KEA WT+SNITAG  +QIQ ++ 
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
            G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372

Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426

Query: 446 KILETYW 452
            ++E Y+
Sbjct: 427 NLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (131), Expect = 8e-09
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 3   WCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER 62
               D     S L         + ++   +P +V  + + +  I   A      +++   
Sbjct: 203 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 262

Query: 63  SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
                +VI +G +  F   L+      +Q EA W ++NI +G  +  + V++HG VP  V
Sbjct: 263 -EQTQKVIDAGALAVFPSLLTNPKT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320

Query: 123 RLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181
            +LS      +++A WA+ N   G + +    ++  G + PL+   +      +++    
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILD 379

Query: 182 TLSNFCRGKPQP--------LFEQTRPALPALERLIHSNDDEVLTDACWALS 225
            +SN  +   +         + E+    L  +E L    ++ V   +   + 
Sbjct: 380 AISNIFQAAEKLGETEKLSIMIEECG-GLDKIEALQRHENESVYKASLNLIE 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (417), Expect = 2e-46
 Identities = 60/455 (13%), Positives = 125/455 (27%), Gaps = 69/455 (15%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 195 FEQTRPALPALERLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 239
                      +R+I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--- 296
            +G+   L+  +++   +           +    ++  +           L+   +N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 297 ----------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346
                         +              N      +  +  I   +NL+  ++ +   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 347 AAWAISNATSGGSNEQI-----KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401
           A        +               + +  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 402 EAEKNMGNTGGVNL----------------------------------FAQAIDDAEGLE 427
              + MGN     +                                   A+    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 428 KIENL-QSHDNTEIYEKAVKILETYWVEEDEDEPL 461
            I NL +S  + +  E A  +L   W  ++    L
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 5e-17
 Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 72  SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 131
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 132 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRN 178
            R      E  +  L N++                    A   +       +    M+ N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 179 ATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 236
                       P+              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 237 A-----VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 292 LLTQNYKKS-----IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 345
           LLT +   +     I   AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 346 EAAWAISN 353
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 5e-16
 Identities = 31/304 (10%), Positives = 82/304 (26%), Gaps = 21/304 (6%)

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 214
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQ 58

Query: 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274
            V   A  AL  L   +                V LLR    + +   L  +   ++  D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 275 MQTQCIINHQALPCLLDLL--------------TQNYKKSIKKEACWTISNITAGNVNQI 320
              + +I          ++               +     +   A   + N+++ +  + 
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC-DLL 379
                +G+I  L+  + N     + +     +      +             + L  +  
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHDNT 438
           N    +  T C     + +     +  +         +  +  ++ +   +  +      
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 439 EIYE 442
              E
Sbjct: 299 ATLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 46/337 (13%), Positives = 98/337 (29%), Gaps = 28/337 (8%)

Query: 1   MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSI 60
           +           +   P+     II                 D  +  +AT   R L S 
Sbjct: 114 LSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 61  ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA-------------WALTNIASGTSE 107
           + +        SG++   + ++          + +                  + +   +
Sbjct: 174 D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167
                 +           S+ +D +              +PK    +  + A+   L   
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292

Query: 168 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR------PALPALERLIHSNDDEVLTDAC 221
            +  K + L      L N    K       ++        LP + RL+ S + +V+    
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM 275
             LS +S   +  +  V+   V P +  LL         S  +L  A  TV N++     
Sbjct: 353 SLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410

Query: 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312
             +   +   L  +++L   +      + A   +S++
Sbjct: 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 67  NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126
              ++   +P+      +     +    A  L+N++         V+ +   P   RLL+
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381

Query: 127 S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180
           S       ++D+   A + + N+    P+      S+  L  ++      A       A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 181 WTLSNFCRGK 190
             LS+    K
Sbjct: 442 LLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (245), Expect = 7e-23
 Identities = 70/476 (14%), Positives = 127/476 (26%), Gaps = 87/476 (18%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
           ++D             L        +  + +SG +P  ++ L       + F A   L N
Sbjct: 71  TNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHN 127

Query: 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160
           +          V   G +   V LL+             L  +A  + + + ++L++G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 220
             L+     +    +L   +  L                  + AL   +      ++ + 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 280
            W L  LSD    +       G+   LV+LL     +V+  A   + N+   +      +
Sbjct: 248 LWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304

Query: 281 IN-----------------------------------------------HQALPCLLDLL 293
                                                            H  LP ++ LL
Sbjct: 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364

Query: 294 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353
                  + K     I N+     N    + E G I  LV LL+ A  + ++  +   + 
Sbjct: 365 HPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 354 ATSGGS--------------------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393
                                           +     I     LL  P   I  V    
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483

Query: 394 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
           L  + +  EA             A+AI+       +  L    N  +   A  +L 
Sbjct: 484 LCELAQDKEA-------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (239), Expect = 5e-22
 Identities = 65/488 (13%), Positives = 129/488 (26%), Gaps = 65/488 (13%)

Query: 26  QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLS 83
           +L   ++P +   +  +D+ +   A     +L   E        I     +V   +  + 
Sbjct: 13  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE---ASRHAIMRSPQMVSAIVRTMQ 69

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
             +  +     A  L N++    E    +   G +P  V++L SP D V   A+  L N+
Sbjct: 70  NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128

Query: 144 AGDSPKCRDLVLSNGALMPLLAQ------------------------------------- 166
                  +  V   G L  ++A                                      
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 167 -----FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC 221
                   +    +L   +  L                  + AL   +      ++ +  
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248

Query: 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 281
           W L  LSD    +       G+   LV+LL     +V+  A   + N+   +      + 
Sbjct: 249 WTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 282 NHQALPCLLDLLTQNYKKSIKKE----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337
               +  L+  + +   +    E    A   +++          A+     +  +V LL 
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP---------RIVT 388
                   +A   +    +            QG I  L  LL                  
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 424

Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
             +EG+            +            I     +     L       I   A  +L
Sbjct: 425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 449 ETYWVEED 456
                +++
Sbjct: 485 CELAQDKE 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 3e-18
 Identities = 64/410 (15%), Positives = 124/410 (30%), Gaps = 28/410 (6%)

Query: 11  CFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 70
               L        +       L  MVA +   +       T   + L +         ++
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIIL 182

Query: 71  QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 130
            SG     +  +    + +L       +  + S  S N   +++ G +      L+ P+ 
Sbjct: 183 ASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241

Query: 131 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190
            + +  +W L N++  + K   +    G L+ LL   + +         +    N  + K
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 191 PQPLFEQTRPALPAL--ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248
                     AL           +  E    A   L+           AV      P +V
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK--------- 299
           +LL  PS   LI A   +   +         +    A+P L+ LL + ++          
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 300 ------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347
                        I +     +  +     N+   I     I   V LL +    I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVA 480

Query: 348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           A  +          +   + ++G   PL +LL+  +  + T     L  +
Sbjct: 481 AGVLCELAQDKEAAEA--IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 1e-15
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 2/167 (1%)

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290
            N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 291 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350
             +         +    T+ N++        AI ++G I  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           + N            +   G ++ +  LLN  + + + +  + L+ +
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 1e-10
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 44/172 (25%)

Query: 57  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 176
            +P+FV+LL SP ++++  A   L  +A D  +  + + + GA                 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGAT---------------- 503

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228
                                       L  L+HS ++ V T A   L  +S
Sbjct: 504 --------------------------APLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-21
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 9/260 (3%)

Query: 60  IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 119
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 120 IFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 178
           + V R L +    +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 179 ATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237
           A + +S   R +    L          L R +     ++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-----HQALPCLLDL 292
           +   G+  +LV L+R          L  + ++VT      +          + L     L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 293 LTQNYKKSIKKEACWTISNI 312
           L Q+ +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 2/118 (1%)

Query: 283 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-F 341
            Q +P       Q   +  ++ A   ++++   N++      +   +  LV   L A   
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399
            ++  AA  I   +   +  Q + L      K L  L       +    L  +  +++
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 49/318 (15%), Positives = 94/318 (29%), Gaps = 29/318 (9%)

Query: 3   WCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRN--IQLDATTQFRKLLSI 60
                       +        +     E L A++ G+  ++ +  ++L AT      L  
Sbjct: 144 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 203

Query: 61  ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 120
            ++    E  +  ++    E     D  +++  A   L  I S   +     +      I
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 262

Query: 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180
            +  + S  D+V  Q +    NV  +                     ++      L+   
Sbjct: 263 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 322

Query: 181 WTLSNFCRGKPQPLFEQ-----------------------TRPALPALERLIHSNDDEVL 217
             L+     + +   +                            LP ++  I + D    
Sbjct: 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 382

Query: 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277
             A  A   + +G        +     P L+EL++ PS  V   A  TVG I    ++  
Sbjct: 383 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLP 439

Query: 278 QCIINHQALPCLLDLLTQ 295
           +  IN   L  LL  L +
Sbjct: 440 EAAINDVYLAPLLQCLIE 457

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 5e-12
 Identities = 37/342 (10%), Positives = 104/342 (30%), Gaps = 13/342 (3%)

Query: 11  CFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 70
           C   L      + +  +       M++          +   T   +L        +   +
Sbjct: 68  CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 127

Query: 71  QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 130
              +  R    +++ +   +Q EA   + ++ S              +   +  L+SP  
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRL 186

Query: 131 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190
            VR++ + ALG++          ++    +  LL++ +++  +S  R     ++   R  
Sbjct: 187 AVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242

Query: 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250
              + E     +P + +  + +DDE+      A          ++   +   +    ++ 
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKY 301

Query: 251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310
           L +       P           + M      +             +    +++ A   + 
Sbjct: 302 LTYD------PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 355

Query: 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 352
            + +     +    +  +   L++     E  +K +   A  
Sbjct: 356 AVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADVFHAYL 396

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 9e-09
 Identities = 42/326 (12%), Positives = 95/326 (29%), Gaps = 49/326 (15%)

Query: 2    LWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE 61
            L             + +          ++ L  +   V+S    +    +          
Sbjct: 743  LLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAA 802

Query: 62   RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121
             +    +   + V     +  +      ++  A  +L  +      + ++ +      + 
Sbjct: 803  LTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVI 858

Query: 122  VRLLSSPTDDVREQAVWALGNVA---------------GDSPKCRDLVLSN--------- 157
            +   SSP+++V+  A +ALG+++                  PK + L+L +         
Sbjct: 859  LEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS 918

Query: 158  --------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 209
                      +  LL +  E A+          L       P+ L       LP L+  +
Sbjct: 919  VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-------LPRLKGYL 971

Query: 210  HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269
             S      +    A+ +        I  +++       ++ L  P  +V   AL T  + 
Sbjct: 972  ISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSA 1030

Query: 270  VTGDDMQTQCIINH--QALPCLLDLL 293
                  +   I +     LP L +  
Sbjct: 1031 A---HNKPSLIRDLLDTVLPHLYNET 1053

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 10/267 (3%)

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
              +F A   L       S       +   V + ++LL     +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 148 PKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
            + +   + +  L   +    E         L+     L     G         +     
Sbjct: 77  KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
              +    D  V  +A   ++ +       +     + +   L+  L  P  +V    + 
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
            +G++V          +    +  LL  L++N   S  +     I+ I+    ++I   +
Sbjct: 195 ALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 250

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAI 351
           E  II  +V      + E+++    A 
Sbjct: 251 EK-IIPLVVKFCNVDDDELREYCIQAF 276

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 41   SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
               + + L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 101  IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160
            +     E          +P     L S +   R   V A+     D P+  D +L N   
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 161  MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 218
            +    +  E   L++ R A  T ++    KP  + +     LP L        + +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 36/252 (14%), Positives = 89/252 (35%), Gaps = 29/252 (11%)

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           LE++  S+D +    A   L       + K+    E  V   +++LL   +  V   A++
Sbjct: 9   LEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NVNQ 319
            +G +V    ++   +     +  L   +  + K+ ++  +   +  +        + + 
Sbjct: 68  CLGPLV--SKVKEYQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSA 122

Query: 320 IQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378
           + A +   I G L + +   E   ++ EA   +++  S      + F  S   +  L   
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQ 180

Query: 379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438
           L  P   +    +  L +++ +           G  +F   I+       +  L  +D+ 
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMS----------CGNIVFVDLIEHL-----LSELSKNDSM 225

Query: 439 EIYEKAVKILET 450
                 ++ +  
Sbjct: 226 STTRTYIQCIAA 237

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 49/309 (15%), Positives = 99/309 (32%), Gaps = 13/309 (4%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
           S+D   +  +    +  +           +   +    +  +     P ++      +T 
Sbjct: 57  SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 114

Query: 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-- 158
           IAS              +P    LL S   +  E A  AL  +  DS +  D  + +   
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170

Query: 159 -ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 217
             ++P   QF +H+   +  +A   ++ F   + Q L          L  L    + EV 
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230

Query: 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277
            + C AL  L +   D++   +   +   +++  +    +V   AL      +T  +   
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286

Query: 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337
              +  + LP L+ +L    K S                +   +  I             
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346

Query: 338 NAEFEIKKE 346
           + E  I++E
Sbjct: 347 HDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 48/383 (12%), Positives = 106/383 (27%), Gaps = 22/383 (5%)

Query: 42  DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 101
           D+ +     +    +  S      +  V +  ++P  +  L    F          +  +
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419

Query: 102 ASGTSENTRVVIDHGA--VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159
            +      + +I +    +P  ++ LS     VR    W L   A               
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479

Query: 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 219
           +  LL +  +  K  +   A    +         L       L  L         + L  
Sbjct: 480 MTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI 538

Query: 220 ACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM- 275
              A+  L+D     + +      + P L++           L P L  + ++ T     
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 598

Query: 276 --------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321
                           Q  +    L        +   K     A   +S +  G    I+
Sbjct: 599 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 658

Query: 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381
            ++    I  L+   +  +    +++++A+    +    + +K  ++   +  L   LN 
Sbjct: 659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNP 717

Query: 382 PDPRIVTVCLEGLENILKAGEAE 404
               +       +  I      E
Sbjct: 718 EFISVCNNATWAIGEISIQMGIE 740

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 17/186 (9%)

Query: 43  DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 102
           D++  + A      L           V +S ++    + +  D  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLT 693

Query: 103 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-----GDSPKCRDLVLSN 157
               ++ +  I    +PI    L+     V   A WA+G ++        P    ++   
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL--- 749

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ---PLFEQTRPALPALERLIHSNDD 214
             L+ ++     +   ++L N   T+       PQ   P+ +Q          L +  D+
Sbjct: 750 HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDN 805

Query: 215 EVLTDA 220
           E    A
Sbjct: 806 EEKDSA 811

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 13/228 (5%)

Query: 1   MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSI 60
           +     +  +              I+   +SL   +  +  D +     A  ++  LL+ 
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431

Query: 61  ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 120
           +      +      +         D    ++  A   L  +     +          +P 
Sbjct: 432 QLGVEFFDEK----LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPK 484

Query: 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180
            + +   P    R   ++ +  ++    +  D+   +  ++P + +       ++  N  
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVA 540

Query: 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228
            +L            +      P LE+L    D +V   A  AL+ LS
Sbjct: 541 KSLQKIGPILDNSTLQSE--VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 12/194 (6%)

Query: 76  PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 135
              I  L+ D   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 136 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195
           A   L  +     K      ++  ++P +   +            + ++       Q + 
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255
            +    LP + R+       V  +   +L  +    ++     +++ V P L +L +   
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 256 PSVLIPALRTVGNI 269
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 24/254 (9%), Positives = 57/254 (22%), Gaps = 37/254 (14%)

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
            D     +  +A  L                  AV + +   S      R+   + LG +
Sbjct: 29  DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
                   +          L           +   A  + +  C+  P      +   + 
Sbjct: 78  KICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE 127

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGT-----------NDKIQAVIEAGVCPRLVELLR 252
             +         V     +A+S ++D              +       A           
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187

Query: 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312
                 +         +     +      + + L  L D L +N   ++  +       +
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGEL 244

Query: 313 TAGNVNQIQAIIEA 326
             G+   +  +   
Sbjct: 245 --GDKTLLPVLDTM 256

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 27/285 (9%), Positives = 61/285 (21%), Gaps = 46/285 (16%)

Query: 122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181
            RLL       R  +   L    G               + L  +F             +
Sbjct: 25  FRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAF 72

Query: 182 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 241
            L      K     +        L  +  ++    +          S     K   +   
Sbjct: 73  ILGQIKICK-----KCEDNVFNILNNMALNDKSACVRATAI----ESTAQRCKKNPIYSP 123

Query: 242 GVCPRLVELLRHPSPSVLIPALRTVG----------NIVTGDDMQTQCIINHQALPCLLD 291
            +  +        S +V       +            I    D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351
               + +    +        +    +  +    +  ++  L + L      +  +   A 
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAA 241

Query: 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLE 395
                         L  +  +  L  +L    D  I+T  ++ L+
Sbjct: 242 GE------------LGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 29/286 (10%), Positives = 80/286 (27%), Gaps = 43/286 (15%)

Query: 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 177
             +    + SP  ++R  +   L  ++ D+                     +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237
                                  A   L+  + S D              +     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 297
             +  +    +  L    P +   A + +  I   +          + +  ++D      
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQ 147

Query: 298 KKSIKKEACWTISNITAGNVNQIQAIIEA--GIIGPLVNLLLNAEF--EIKKEAAWAISN 353
            +++K+ +   +  +      Q QA++ +   I+  +V    + E    ++  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 354 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399
           +     N   +       ++ +C+     D  +       L  I+ 
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 28/164 (17%)

Query: 115 HGAVPIFVRLLSSPTDDVREQAVWALG-----NVAGDSPKCRDLVLSNGALMPLLAQFNE 169
           +  V     L+    + VR    + L       +  D       +     L         
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFD-EDREVRITVADRLPL------- 116

Query: 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC--WALSYL 227
                M  +  + +  +   +  P           L R +   D +V            L
Sbjct: 117 EQLEQMAADRDYLVRAYVVQRIPP---------GRLFRFMRDEDRQVRKLVAKRLPEESL 167

Query: 228 SDGTNDKI----QAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
              T D      + V        L+ELL  P  +V + A+    
Sbjct: 168 GLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 34/140 (24%)

Query: 125 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184
           ++     VR     AL  +  +            A  PLL   +          A    +
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 244
                           A+  L +L+  +   V + A  +L  +                 
Sbjct: 49  FQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERV-----------R 86

Query: 245 PRLVELLRHPSPSVLIPALR 264
             + +L    +      A+ 
Sbjct: 87  AAMEKLAETGTGFARKVAVN 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.71
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.69
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.58
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.47
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.47
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.39
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.35
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.31
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.22
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.19
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.12
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.97
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.78
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.77
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.45
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.34
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.35
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.9
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.63
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.58
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.44
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.01
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.36
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.83
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.31
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	88.22
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	87.67
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	86.87
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	84.35
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	84.05
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	83.57
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	82.71

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-44  Score=358.68  Aligned_cols=426  Identities=58%  Similarity=0.893  Sum_probs=388.4

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+.++.++..+.+++...+..|+..++++++....+..+.+++.|++|.|+++++.+.++.++..|+++|.+++..++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            36799999999999999999999999999987777889999999999999999987655889999999999999988888


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ...+.+.|+++.++.++.+++.+++..++|+|+|++.+++..+..+.+.|++++++.++ .+.+..++..++|++.+++.
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999999999 67778899999999999998


Q ss_pred             CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          189 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      .. +........++++.+..++.+.+++++..+++++.+++...++....+.+.|+++.++.++.++++.++..++.+++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~  313 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  313 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence            76 55556677899999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      +++.+++.....+++.|+++.+..+++++ ++.++..++|+++|++.+++.....+++.|+++.++.++.+++.+++.+|
T Consensus       314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a  392 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  392 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence            99998888888888999999999999998 99999999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011316          348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  425 (488)
Q Consensus       348 ~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~  425 (488)
                      +|+|.|++..+  .++....+.+.|+++.|+++++..+++++..++.+|.+++..+........ ...|.+...+++.|+
T Consensus       393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~-~~~~~~~~~iee~g~  471 (503)
T d1wa5b_         393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG-LNINENADFIEKAGG  471 (503)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCHHHHHHHHTTH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHCCC
Confidence            99999998754  346778899999999999999999999999999999999977654332211 234678899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316          426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       426 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ++.|+.++++++++++++|..++++||++|||
T Consensus       472 ~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         472 MEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999999999988765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-43  Score=345.39  Aligned_cols=418  Identities=49%  Similarity=0.826  Sum_probs=380.7

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ...++.+++.|.|++++.+..|+..++++++...++....+++.|++|.|+++|++.+++++|..|+++|.+++..+++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            36799999999999999999999999999887766678889999999999999987655889999999999999888889


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHH
Q 011316          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLS  184 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~v~~~a~~~L~  184 (488)
                      +..+++.|+++.++.++.++++++++.++++|++++.+++..+..+.+.+++..++.++....    .......+++++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999989999999999999999985332    2345678899999


Q ss_pred             HhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHH
Q 011316          185 NFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL  263 (488)
Q Consensus       185 ~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  263 (488)
                      +++... .........++++.+..++++++++++..+++++.+++..+......+.+.|+++.++.++.++++.++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            999876 4445556788999999999999999999999999999988877777788889999999999999999999999


Q ss_pred             HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 011316          264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  343 (488)
Q Consensus       264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  343 (488)
                      .++.+++..++.....+++.|+++.+..+++++ ++.++..|++++++++..+.+....+.+.|+++.++.++.++++++
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v  330 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  330 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHH
Confidence            999999998888888889999999999999998 8999999999999999988888888999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      +..|++++.+++...+.+....+.+.|+++.|+++++.++++++..++++|.+++...+...      ..+.+...+++.
T Consensus       331 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~------~~~~~~~~~~~~  404 (434)
T d1q1sc_         331 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHc
Confidence            99999999999998888888999999999999999999999999999999999998766432      234578899999


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          424 EGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       424 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      |+++.|+.|++++++++++.|.+++++||.
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=280.00  Aligned_cols=374  Identities=25%  Similarity=0.357  Sum_probs=328.4

Q ss_pred             CCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHH
Q 011316           17 PMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA   95 (488)
Q Consensus        17 ~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~   95 (488)
                      |++.++..     |.+|.|+..|++ .++.++..|+++|.++++.. ......+.+.|+++.++.+|.+++ .+++..|+
T Consensus       111 ~i~~ii~~-----g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~  183 (503)
T d1wa5b_         111 PIDVVIQA-----GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAI  183 (503)
T ss_dssp             SHHHHHHT-----TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHH
T ss_pred             hHHHHHHC-----CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHH
Confidence            34455666     999999999985 56889999999999988765 566778889999999999999998 89999999


Q ss_pred             HHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011316           96 WALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM  175 (488)
Q Consensus        96 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v  175 (488)
                      ++|++++..+++.+..+.+.|+++.|+.++.+.+..++..++|+|.+++...+.........++++.++.++ .+.++++
T Consensus       184 ~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~  262 (503)
T d1wa5b_         184 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTET  262 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHH
T ss_pred             HHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHH
Confidence            999999998899999999999999999999999999999999999999977655455555667899999998 7888999


Q ss_pred             HHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011316          176 LRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       176 ~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      +..++|++.+++...+. .......++++.++.++.+++..++..++.++++++...+.....+.+.|+++.+..++.++
T Consensus       263 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~  342 (503)
T d1wa5b_         263 LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP  342 (503)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC
Confidence            99999999999987632 23445578999999999999999999999999999998888888888999999999999999


Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHH
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~  331 (488)
                      ++.++..+++++++++.+++.....+++.++++.++.++.++ +..++.+|+|+|+|++.   ..++....+++.|+++.
T Consensus       343 ~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~  421 (503)
T d1wa5b_         343 KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP  421 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHH
Confidence            999999999999999998888888889999999999999999 89999999999999997   23567788899999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhccCC----------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316          332 LVNLLLNAEFEIKKEAAWAISNATSGG----------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       332 L~~ll~~~~~~v~~~a~~aL~~l~~~~----------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      |++++...+.++...++.+|.++...+          .......+.+.|+++.|..+..+++.++...|...|.+++.
T Consensus       422 l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         422 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            999999999999999999999987422          12344567788999999988889999999999988877664

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-33  Score=271.19  Aligned_cols=371  Identities=26%  Similarity=0.411  Sum_probs=322.5

Q ss_pred             ChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011316           19 DPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        19 ~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +.++..     |.+|.|++.|++ +++++|..|+++|.++++.. .+....+++.|+++.++++|++++ ++++..|+++
T Consensus        50 ~~i~~~-----g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~  122 (434)
T d1q1sc_          50 DNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWA  122 (434)
T ss_dssp             HHHHHT-----TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred             HHHHHC-----CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHH
Confidence            445555     999999999975 56889999999999988765 566788899999999999999988 9999999999


Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc
Q 011316           98 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK  172 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  172 (488)
                      |++++.++++.+..+.+.|+++.++.++...+     ......+++++.+++...+.........+.++.+..++ .+.+
T Consensus       123 L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~  201 (434)
T d1q1sc_         123 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHND  201 (434)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSC
T ss_pred             HHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccc
Confidence            99999988899999999999999999997643     35567788999999987665555555566788888888 7788


Q ss_pred             HhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011316          173 LSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  251 (488)
                      ++++..+++++.+++...+ ........++++.+++++++++..++..++.++.+++..++.....+++.|+++.+..++
T Consensus       202 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  281 (434)
T d1q1sc_         202 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL  281 (434)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred             cchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhh
Confidence            9999999999999988763 223344578999999999999999999999999999988877778889999999999999


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChH
Q 011316          252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIG  330 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~  330 (488)
                      .+++++++..+++++++++.........+.+.++++.++.++.++ +..++..|+++++|++. .+.+....+.+.|+++
T Consensus       282 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~  360 (434)
T d1q1sc_         282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE  360 (434)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred             cccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Confidence            999999999999999999998888888888999999999999998 89999999999999998 5677888899999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhcc-----CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316          331 PLVNLLLNAEFEIKKEAAWAISNATS-----GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~-----~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                      .|+++++.++++++..++++|.++..     ...+.....+.+.|+++.|..+..+++++++..|.+.|.+.+
T Consensus       361 ~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         361 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999874     223345666778899999999999999999999999887653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=266.65  Aligned_cols=401  Identities=19%  Similarity=0.214  Sum_probs=344.8

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .|++|.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+.+|++++ ++++..+++++.+++..+++.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~  177 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  177 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHH
Confidence            389999999999999999999999999988765 556677779999999999999998 999999999999999888889


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+...|+++.++.++.+ +...++..+++++.+++.+. +.+..+.+.|+++.++.++ .+.+..++..+++++.+++
T Consensus       178 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhcc
Confidence            9999999999999999965 56789999999999998754 5688899999999999999 7788899999999999998


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHH
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~  265 (488)
                      ....  ......++++.+++++.+++..++..++++|.+++..++.....+.+.++++.++..+.  ++.+.++..++.+
T Consensus       256 ~~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~a  333 (529)
T d1jdha_         256 DAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TTCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHH
Confidence            6542  23344689999999999999999999999999999888777788888999999999884  3567889999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011316          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--  340 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~--  340 (488)
                      |.+++.....   ....+...++++.++.++.++.+..++..+++++.|++.. ++....+.+.|+++.|++++.+.+  
T Consensus       334 L~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHH
Confidence            9999975442   3344557899999999998875667888999999999876 566777889999999999997643  


Q ss_pred             --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316          341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                                          .++...++.++..++.  .+..+..+.+.|+++.|++++.++++.++..++.+|.++...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                                3456677788888875  456677788899999999999999999999999999998644


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      .+             ..+.+.+.|+++.|.++++++|+.++..|..+|.++
T Consensus       491 ~~-------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hh-------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            33             367889999999999999999999999999998775

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-31  Score=261.05  Aligned_cols=405  Identities=16%  Similarity=0.155  Sum_probs=342.1

Q ss_pred             hccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316           29 LESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        29 ~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      .+.++.+++.|++ ++++++..|+.+|.++.. . .+....+++.|+++.|+++|++++ ++++..|+++|.+++.+++.
T Consensus        58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~  134 (529)
T d1jdha_          58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccch
Confidence            3678999999974 678999999999999754 3 577788999999999999999998 99999999999999997888


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~  187 (488)
                      .+..+.+.|+++.|+.++++++++++..++++|.+++..++..+..+...|+++.++.++..+.+..++..+++++.+++
T Consensus       135 ~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls  214 (529)
T d1jdha_         135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             hhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence            88889999999999999999999999999999999998888888889999999999999976777889999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ............++++.+..++.+++..++..+++++.+++......   ....|+++.|++++.++++.++..++++|+
T Consensus       215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~  291 (529)
T d1jdha_         215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHH
Confidence            87655556667899999999999999999999999999998654322   222478899999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCC---HHHHHHHHHcCChHHHHHHHhcC-Chh
Q 011316          268 NIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN---VNQIQAIIEAGIIGPLVNLLLNA-EFE  342 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~~~l~~L~~ll~~~-~~~  342 (488)
                      +++..++.....+.+.++++.++..+.. ...+.++..+++++.+++...   ......+...+.++.++.++..+ +..
T Consensus       292 ~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~  371 (529)
T d1jdha_         292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  371 (529)
T ss_dssp             HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             hhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHH
Confidence            9999888888888899999999998853 225778999999999999742   23444566789999999999876 456


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHh
Q 011316          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKA  400 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~  400 (488)
                      ++..+++++.+++...  +....+.+.|+++.|++++.+.+                      .+++..+..++..+...
T Consensus       372 ~~~~~~~~l~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~  449 (529)
T d1jdha_         372 LIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  449 (529)
T ss_dssp             HHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhcchhh--hhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC
Confidence            8889999999998754  55677889999999999986433                      34556666666665432


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ..             .+..+.+.|+++.|.+++.+++++++..|...+.++...
T Consensus       450 ~~-------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         450 VH-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HH-------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            22             266788899999999999999999999999999887643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-25  Score=218.39  Aligned_cols=368  Identities=17%  Similarity=0.184  Sum_probs=280.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..+|.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+++.|+++|++++++++..|+++|.+++.++++.+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999998888899


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----------------ccCChhH
Q 011316          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------------HSNDDEV  216 (488)
Q Consensus       153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----------------~~~~~~v  216 (488)
                      .+.+.|+++.++.++....++.++..+++++.+++.......... ...++.++..+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777888999999999999998764333333 33334343332                2346889


Q ss_pred             HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC------CcchHhHHHHHHhHhh--------------------
Q 011316          217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP------SPSVLIPALRTVGNIV--------------------  270 (488)
Q Consensus       217 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~L~~l~--------------------  270 (488)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+....                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999987766555445557788888777431      1111111111111110                    


Q ss_pred             ------------------------------cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH--
Q 011316          271 ------------------------------TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--  318 (488)
Q Consensus       271 ------------------------------~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  318 (488)
                                                    .........+...++++.++.++.+..++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          001112222334456777878776665788899999999999874221  


Q ss_pred             ---HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHH
Q 011316          319 ---QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTV  389 (488)
Q Consensus       319 ---~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~  389 (488)
                         ....+.+.++++.|+.++.+++++++..+++++.+++...  +....+. .++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               2233456789999999999999999999999999998754  3344444 4688999988863      23578999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 011316          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ++.+|.++....+.            .+..+.+.|+++.|.+++.+ +++.+++.|..+|.++|..++-
T Consensus       397 a~~~L~~l~~~~~~------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHhcCCHH------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            99999999865443            36778889999999999755 5789999999999999987664

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.9e-24  Score=205.72  Aligned_cols=363  Identities=15%  Similarity=0.180  Sum_probs=270.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..||.|++.|++++++++..|+++|.+++.++ ++....+.+.|++|.|+++|++++ +++|..|+++|.+++.++++++
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            36899999999999999999999999987654 678899999999999999999998 9999999999999998889999


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh---------------cccccH
Q 011316          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF---------------NEHAKL  173 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l---------------~~~~~~  173 (488)
                      ..+.+.|+++.++.++.+ .+++++..++++|.+++..... +...... +++.++..+               ....+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            999999999999998865 7889999999999999987653 3333332 334444433               133467


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhccC------ChhHHHHHHHHHHHhcc-----------------
Q 011316          174 SMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSN------DDEVLTDACWALSYLSD-----------------  229 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~ll~~~------~~~v~~~al~~L~~l~~-----------------  229 (488)
                      .++..+++++.+++........ ....++++.++.++++.      .......+...+.+...                 
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            8999999999999877533222 23357788888877532      11112222222211110                 


Q ss_pred             ---------------------------------CCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011316          230 ---------------------------------GTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       230 ---------------------------------~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                                                       ........+...++++.++.++.. .++.++..+.+++.+++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                             000011112223455666666644 4567888889999998875442


Q ss_pred             -----hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------ChhHH
Q 011316          276 -----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEIK  344 (488)
Q Consensus       276 -----~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~v~  344 (488)
                           ....+.+.++++.++++++++ ++.++..+++++++++.. ++....+. .++++.++.++...      +.+++
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~  394 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHH
Confidence                 233445789999999999999 999999999999999875 44444444 46899999988653      35689


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 011316          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKA  400 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~  400 (488)
                      ..++.+|.+++... ++..+.+.+.|+++.|++++++. ++.++..|..+|.+++..
T Consensus       395 ~~a~~~L~~l~~~~-~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            99999999998754 57788888899999999998765 578999999999998644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-19  Score=160.77  Aligned_cols=194  Identities=18%  Similarity=0.183  Sum_probs=174.6

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  166 (488)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. +++++++++|..|+++|++++.+++..+..+.+.|+++.++.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 7888888999999999886 7888999999999999999999999899999999999999999


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316          167 FNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      +..+.++.++..++++|.+++.+.+ ........++++.+++++++++..++..++++|.+++..++.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9767788999999999999998873 344456688999999999999999999999999999988777888899999999


Q ss_pred             HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh
Q 011316          246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  282 (488)
Q Consensus       246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  282 (488)
                      .|+.++.++++.++..++++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999987776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.6e-18  Score=150.72  Aligned_cols=228  Identities=17%  Similarity=0.162  Sum_probs=185.7

Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH-hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011316          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  290 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  290 (488)
                      .+...+..|+.+|.+++...+ ....+...|+++.++. +++++++.++..|+++|++++.+++.....+.+.|+++.++
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            456788999999999996544 4566888899998875 67889999999999999999998888888888999999999


Q ss_pred             HHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316          291 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       291 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                      .++.+..++.++..+++++++++.+++.....+...|+++.|++++.+++..++..++++|.+++.. +++....+.+.|
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~  186 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHhh
Confidence            9997654788999999999999999899899999999999999999999999999999999999875 346678888999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh--hcc---HHHHHHhhc--CCCHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD--AEG---LEKIENLQS--HDNTEIYEK  443 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~g~---~~~l~~l~~--~~~~~v~~~  443 (488)
                      +++.|+.++++++++++..++++|.++....+...            ..+..  .+.   ++.+.....  .+..+..+.
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~  254 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV------------RECREPELGLEELLRHRCQLLQQHEEYQEELEF  254 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH------------HHHHHhhhhHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999986554331            11221  111   222222222  234455677


Q ss_pred             HHHHHHHhcC
Q 011316          444 AVKILETYWV  453 (488)
Q Consensus       444 a~~~l~~~~~  453 (488)
                      +..+++.+|+
T Consensus       255 ~~~ll~~~~~  264 (264)
T d1xqra1         255 CEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            7888888774

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.7e-17  Score=162.17  Aligned_cols=383  Identities=11%  Similarity=0.122  Sum_probs=268.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+.+.++++++.+|..++..+..++....    ........++.+..++++++ +.+|..|+.++..++...+.. 
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~-  237 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH-
Confidence            456677778888999999999999999887542    22334567888999999888 899999999999987632221 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                        -....+++.+..++.++++.+|..++.+|+.++...+   ........++.+..++ .+.+..++..++.++..++..
T Consensus       238 --~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHH
Confidence              1122357888999999999999999999999874321   1223335677777777 778889999999999998876


Q ss_pred             CCCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc---------------------hhHH----------
Q 011316          190 KPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN---------------------DKIQ----------  236 (488)
Q Consensus       190 ~~~~~--~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~---------------------~~~~----------  236 (488)
                      -....  ......+++.+...+.+.++.++..+..++..++..-.                     +...          
T Consensus       312 l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~  391 (588)
T d1b3ua_         312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred             HhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            52222  12335666777777777777776666655554432100                     0000          


Q ss_pred             -----HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          237 -----AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       237 -----~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                           .-....+++.+...+.+.++.+|..++.+++.++....   ...+...+.+.+..++.++ ...+|..|+.+++.
T Consensus       392 ~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         392 EVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC---GGGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             hhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC---hHhHHHHHHHHHHhhccCC-chhHHHHHHHHHHH
Confidence                 00111345556666677777777777777777664211   1112234566777788887 88999999999999


Q ss_pred             HhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316          312 ITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       312 l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  390 (488)
                      ++.. .++.    ....+++.+.+++.++++.+|..++.++..+....+.+    ......++.|.++++++.+.||..+
T Consensus       468 l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a  539 (588)
T d1b3ua_         468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNV  539 (588)
T ss_dssp             HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9762 2221    22347889999999999999999999999987543222    2334689999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316          391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       391 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      +++|..+........          +.     ....+.+..++++++.+|+..|...++.+
T Consensus       540 ~~~l~~i~~~~~~~~----------~~-----~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         540 AKSLQKIGPILDNST----------LQ-----SEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHGGGSCHHH----------HH-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHh----------HH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999999865443211          12     22357788899999999999999998875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-15  Score=151.52  Aligned_cols=338  Identities=13%  Similarity=0.153  Sum_probs=248.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC--CCchhh
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS--GTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~--~~~~~~  109 (488)
                      +..|++.|+++++.+|..|++.|..++..-+.+.    ....++|.|.+++++++  +++..++..|+++..  +.++..
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~----~~~~lip~l~~~~~~~~--ev~~~~~~~l~~~~~~~~~~~~~   85 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER----TRSELLPFLTDTIYDED--EVLLALAEQLGTFTTLVGGPEYV   85 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH----HHHTHHHHHHHTCCCCH--HHHHHHHHHHTTCSGGGTSGGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHh----hHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHcCChhHH
Confidence            5668999999999999999999999876442221    22467899999987654  688888888877765  123332


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                           ..+++.+..++.++++.+|+.|+.++..++...+.  .. ... .+.+++..+..+.....+..++..+..+...
T Consensus        86 -----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~--~~-~~~-~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~  156 (588)
T d1b3ua_          86 -----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SD-LEA-HFVPLVKRLAGGDWFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             -----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HH-HHH-THHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred             -----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH--HH-HHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence                 24578888888889999999999999999876543  12 222 3444555553556667788888877777654


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .   .......+.+.+..++.+.++.++..++.+++.++..-..   ......+++.+..+++++++.+|..++.++..+
T Consensus       157 ~---~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i  230 (588)
T d1b3ua_         157 V---SSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI  230 (588)
T ss_dssp             S---CHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred             h---hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHh
Confidence            2   2233456788888999999999999999999999876442   233457788899999999999999999999998


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      +...+..   -....+++.+..+++++ ++.+|..++.++++++.. .++    .....+++.+..++.+.++++|..++
T Consensus       231 ~~~~~~~---~~~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~  302 (588)
T d1b3ua_         231 AQLLPQE---DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE----ITKTDLVPAFQNLMKDCEAEVRAAAS  302 (588)
T ss_dssp             HHHSCHH---HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH----HHHHTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             hccCCHH---HHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhhh----hhhhhhhHHHHHHHhccchHHHHHHH
Confidence            8643322   12234678888888888 999999999999998762 222    23346789999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                      .++..++............-..+++.+...+++.++.++..+..++..+.
T Consensus       303 ~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~  352 (588)
T d1b3ua_         303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence            99999876543322222233357888888888888888887776665554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.1e-12  Score=133.10  Aligned_cols=396  Identities=14%  Similarity=0.184  Sum_probs=238.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hhh
Q 011316           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENT  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~  109 (488)
                      .++.+.+.+.++++..|..|+.+|..++.+. .+.....+ ..+++.++..+++++ +.+|..|+|+++.++.... ...
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            4566667778899999999999999877543 11111111 246788889999988 9999999999999875221 112


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh-
Q 011316          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC-  187 (488)
Q Consensus       110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~-  187 (488)
                      .. .-..+++.++..+.++++.++..|+++|.+++.... .....+-  ..++.++..+ ...+...+..+..++..++ 
T Consensus       473 ~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~--~il~~l~~~l-~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         473 DT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAF-SKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             HH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHH--HHHHHHHHHT-TTCCHHHHHHHHHHHHHHHH
T ss_pred             hh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH
Confidence            22 234678889999999999999999999999874211 0111100  1223333333 1112222222222222221 


Q ss_pred             --------------------------------------------cCCCCCChhhhhchHHHHHHhhc-------------
Q 011316          188 --------------------------------------------RGKPQPLFEQTRPALPALERLIH-------------  210 (488)
Q Consensus       188 --------------------------------------------~~~~~~~~~~~~~~~~~L~~ll~-------------  210 (488)
                                                                  ......-........+.++.++.             
T Consensus       549 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  628 (888)
T d1qbkb_         549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP  628 (888)
T ss_dssp             HHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                                                        11100000001111111122111             


Q ss_pred             ----cCChhHHHHHHHHHHHhccCCchhHHHHH-HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316          211 ----SNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  285 (488)
Q Consensus       211 ----~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  285 (488)
                          ..+......++.++..+...-......++ ...+++.+...+.+.++.++..|..+++.++..........++ .+
T Consensus       629 ~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~  707 (888)
T d1qbkb_         629 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DF  707 (888)
T ss_dssp             TTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HH
Confidence                12344555566666665543222223333 3456788888899999999999999999998766555444333 46


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHH
Q 011316          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      ++.+...++++ ...++..|+|+++.++....+.....+. .+++.|+.+++++  +..++++++.+|+.++... ++..
T Consensus       708 ~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~  784 (888)
T d1qbkb_         708 MPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEV  784 (888)
T ss_dssp             HHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred             HHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHH
Confidence            77788888888 8899999999999998743333333332 3788899999876  4558999999999998755 3332


Q ss_pred             HHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHH
Q 011316          364 KFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  442 (488)
Q Consensus       364 ~~l~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~  442 (488)
                      ..... .+++.++..+.. .|.+-+..+...+..++...+..-.       ..+.. |     ++.+.. ...+.++++.
T Consensus       785 ~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~-------~~l~~-~-----~~~i~~-~~~~~~~~~~  849 (888)
T d1qbkb_         785 APMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-------QDFIF-F-----CDAVAS-WINPKDDLRD  849 (888)
T ss_dssp             GGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG-------GGHHH-H-----HHHHTT-CSSCCHHHHH
T ss_pred             HhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH-------HHHHH-H-----HHHHHh-cCCCCHHHHH
Confidence            22122 366666666654 4455577888999998877664321       00111 1     112222 1335678888


Q ss_pred             HHHHHHHHhc
Q 011316          443 KAVKILETYW  452 (488)
Q Consensus       443 ~a~~~l~~~~  452 (488)
                      ...++|..|-
T Consensus       850 ~~~~~l~~~~  859 (888)
T d1qbkb_         850 MFCKILHGFK  859 (888)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888886654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-12  Score=138.00  Aligned_cols=407  Identities=12%  Similarity=0.106  Sum_probs=266.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +..|++.|.+.|+++|..|+..|.+.+....... +.-....+++.++++|++++ ++||..|+.+|+.++...++... 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~-~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhccccc-ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence            5678899999999999999999999876542211 11112347889999999998 99999999999999885443322 


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch------hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~  185 (488)
                         ..+++.|+..+.+++...+..+..+|..+...-+.      .... .....++.+...+.+..+..++..++.++..
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence               13578888888888888888888888776532111      1111 1112344445555456678889999999998


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHH
Q 011316          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~  264 (488)
                      +....+.........+++.+...+.+++..++..++.+|+.++...+..   .. ..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            8776544444445678888889999999999999999999998654321   11 14455565555 3456677888899


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH----HHHHHHHHc--------------
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQIQAIIEA--------------  326 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~l~~~--------------  326 (488)
                      +++.++...+......+ ..+++.+...+++. +..+|..++.++..++...+    .....++..              
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            99999876554332222 36788899999888 88999999999988876322    111111110              


Q ss_pred             ------------------CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011316          327 ------------------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       327 ------------------~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  388 (488)
                                        ...+.......+..+.+|..++.+|..+..... +....+. ..+++.|...+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~~-~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHH-HHHHHHHHHHhcCCchHHHH
Confidence                              001111111223356899999999999987543 3333322 36889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCC----CccchHHHHHHh--hccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          389 VCLEGLENILKAGEAEKNMGNT----GGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~~----~~~~~~~~~l~~--~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      .++.++..++............    ...+.....+..  ...++.+.....+.+..++..+..++..+..
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            9999998887543221100000    000001111211  2346667777888899999988888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.1e-11  Score=127.56  Aligned_cols=381  Identities=14%  Similarity=0.117  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011316           45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  124 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  124 (488)
                      .++..++.+|..++...+.+...     -+++.+.+.+++++ ...|+.|+.+++.++.+..+.....+. .+++.++..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~-----~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLP-----HILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHH-----HHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHH-----HHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            35666777776655443222222     24566667788888 799999999999999855443222221 457888889


Q ss_pred             hCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011316          125 LSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  203 (488)
Q Consensus       125 L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  203 (488)
                      ++++++.+|..++|+|+.++..... .... .-...++.++..+ .+.++.++..|+++|.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999999999999999998742111 1111 1234567777777 67788999999999999987654444556678888


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchh--HHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHH
Q 011316          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      .+...+...+......+..++..++......  ...+.+ .+++.+......  .+.......+.+++.++.........
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            8888888877777777777777766321111  011222 344455444432  23334455666776665433222111


Q ss_pred             HhhCCChHHHHHHhc----------------ccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHcCChHHHHHHHhcCChh
Q 011316          280 IINHQALPCLLDLLT----------------QNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~----------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~~  342 (488)
                      ... .+++.++.++.                ...+..+...+..++..++..-......+ ....+++.+...+++.+++
T Consensus       602 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         602 YCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            111 11112222211                01134455666667776665211222233 3456788899999999999


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011316          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  422 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  422 (488)
                      ++..|..+++.++.........++-  ..++.+...++++...++..++++++.++......-.        +|...+  
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~--------py~~~i--  748 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ--------PYIPMV--  748 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGG--------GGSHHH--
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHH--
Confidence            9999999999988655433333332  2677788888888889999999999999765443211        122222  


Q ss_pred             hccHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 011316          423 AEGLEKIENLQSHD--NTEIYEKAVKILETY  451 (488)
Q Consensus       423 ~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~  451 (488)
                         ++.|..+++++  +..+.+-+...+.++
T Consensus       749 ---l~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         749 ---LHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             ---HHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence               45566665543  455766666666653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=7.9e-11  Score=104.94  Aligned_cols=257  Identities=15%  Similarity=0.162  Sum_probs=193.9

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~  150 (488)
                      +....+.|+++|++++ +.+|..|+.+|+.+..  +         ..++.|+.+++++++.+|..|+.+|+.+...... 
T Consensus        17 ~~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-   83 (276)
T d1oyza_          17 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-   83 (276)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-
T ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-
Confidence            3456778999999999 9999999999998754  1         3479999999999999999999999998644332 


Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       151 ~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      ...     .+..+...+..+.++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+.. 
T Consensus        84 ~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          84 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             ccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence            111     234555555578899999999999999886531    2234567788888888899999999888876532 


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                                ...++.+..++...++.++..+..++.........         ..+.+...+.+. +..++..+..+++
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~  213 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLS  213 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccc
Confidence                      25567788888888888888888888777654332         344567777777 8889999999988


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHH
Q 011316          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTV  389 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~  389 (488)
                      .+..           ...++.|++.+.+  +.++..++++|+.+..   +         ..++.|..++.. ++.+++..
T Consensus       214 ~~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~---------~~~~~L~~~l~~~~d~~vr~~  268 (276)
T d1oyza_         214 YRKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS  268 (276)
T ss_dssp             HTTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred             hhhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---H---------HHHHHHHHHHccCCCHHHHHH
Confidence            7642           2367888888875  4688999999998852   2         357777777765 56789999


Q ss_pred             HHHHHH
Q 011316          390 CLEGLE  395 (488)
Q Consensus       390 al~~L~  395 (488)
                      |+++|.
T Consensus       269 A~~~L~  274 (276)
T d1oyza_         269 AIDKLK  274 (276)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            888874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.2e-10  Score=102.02  Aligned_cols=254  Identities=16%  Similarity=0.132  Sum_probs=188.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.|++.|.++++.+|..|+..|..+..            ...++.|++++++++ +.+|..|+.+|+.+..... ..
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~-~~   84 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   84 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            456679999999999999999999988532            135799999999999 9999999999999876222 21


Q ss_pred             HHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316          110 RVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ...     ++.+.. +++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++..+..
T Consensus        85 ~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          85 DNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             HHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             cch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch
Confidence            111     333433 567899999999999999997654432222     345566666 67788899888888876543


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                                ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccch
Confidence                      24567888888888999999888888877655432         33456777888888999999888877


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHH
Q 011316          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEA  347 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a  347 (488)
                      +..           ...++.|++.+.++   .+|..++++|+.+..  +         +.++.|..++... +.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~--~---------~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC--H---------HHHHHHHHHHccCCCHHHHHHH
Confidence            532           23567788888654   588999999998842  2         4788888888775 77899999


Q ss_pred             HHHHH
Q 011316          348 AWAIS  352 (488)
Q Consensus       348 ~~aL~  352 (488)
                      +.+|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-10  Score=111.38  Aligned_cols=389  Identities=11%  Similarity=0.093  Sum_probs=248.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchh-hHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSEN-TRV  111 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~  111 (488)
                      .+++.+.|+|.+.+.+|-..|..+...+.         .+++..|...+.+++ ...+|..|+..|.+........ ...
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            56777789999999999999999775421         235677777776543 3678999998888877633221 111


Q ss_pred             H----------HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHH
Q 011316          112 V----------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNAT  180 (488)
Q Consensus       112 ~----------~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~v~~~a~  180 (488)
                      .          ....+.+.++..+.++++. ++.++.+++.++......   -.-.+.++.++..+.. ..+...+..++
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l  150 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTL  150 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHH
Confidence            1          1123445666766665543 334455555554211000   0011356677776632 34556778888


Q ss_pred             HHHHHhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhH-HHHHHhCCHHHHHHhcCCCCc
Q 011316          181 WTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       181 ~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      .++..++... +.........+++.+...+.+.  +..++..++.++..+........ .........+.+...+.++++
T Consensus       151 ~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  230 (458)
T d1ibrb_         151 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  230 (458)
T ss_dssp             HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCH
Confidence            9988887654 2333344567788888888754  57899999999999886543221 112222456777888888999


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHH--------------
Q 011316          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA--------------  322 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~--------------  322 (488)
                      +++..++.++..++...+......+.......+...+.+. ++.++..++..+..++.........              
T Consensus       231 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         231 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            9999999999999876655443333333444555566666 7889999998888876421111100              


Q ss_pred             ------HHHcCChHHHHHHHhc-------CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011316          323 ------IIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       323 ------l~~~~~l~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  389 (488)
                            .....+++.+...+..       .+..++..+..++..++.....+....     +++.+.+.++++++.++..
T Consensus       310 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~a  384 (458)
T d1ibrb_         310 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDA  384 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHH
Confidence                  0011234444554432       134588889999988876544333333     4677888899999999999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      ++.+|..+........          +...+  ...++.+...++++++.|+..|.+.+.++.+
T Consensus       385 al~~l~~i~~~~~~~~----------~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         385 AVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHhH----------HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999988764322111          01111  2246778888999999999999999988764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.2e-11  Score=112.77  Aligned_cols=362  Identities=13%  Similarity=0.072  Sum_probs=225.8

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHH----------HHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011316           30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINE----------VIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~----------~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +-+..+...+.+  .+..+|..|+..|.+.+..........          -....+.+.+++.+.+++ +.. ..++.+
T Consensus        34 ~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~~-~~~~~~  111 (458)
T d1ibrb_          34 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQC  111 (458)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HHH-HHHHHH
Confidence            345666676754  357899999999999886542111111          112345556777777765 333 344555


Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHh
Q 011316           98 LTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLS  174 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~  174 (488)
                      +..++..... .  -.-.+.++.+...+.+  .+...+..++.++..++.........-.....++.++..+.. +.+..
T Consensus       112 ~~~i~~~~~~-~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEIP-V--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHGG-G--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhCC-c--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            5555541100 0  0012567888887765  567888899999988874332211111111235566666633 34678


Q ss_pred             HHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316          175 MLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  252 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  252 (488)
                      ++..++.++..+.....  ...........+.+...+.+++++++..++.++..++..........+.......+...+.
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998886541  1223333456777888888899999999999999998655443322222233444556667


Q ss_pred             CCCcchHhHHHHHHhHhhcCCchhhHH--------------------HhhCCChHHHHHHhcc------cchhhHHHHHH
Q 011316          253 HPSPSVLIPALRTVGNIVTGDDMQTQC--------------------IINHQALPCLLDLLTQ------NYKKSIKKEAC  306 (488)
Q Consensus       253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------~~~~~~~~~L~~lL~~------~~~~~v~~~a~  306 (488)
                      +.++.++..++..+..++.........                    .....+.+.+...+.+      ..+..++..+.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            778889999998888876422111000                    0011223344444322      11345888888


Q ss_pred             HHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316          307 WTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       307 ~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  385 (488)
                      .++..++... .+...     .+++.+.+.++++++.+|..|+.+|+.++.....+..... -..+++.+...++++++.
T Consensus       349 ~~l~~l~~~~~~~~~~-----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         349 VCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHhccHhhhh-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHH
Confidence            8888887622 22221     2566777888888999999999999999875432222111 125688899999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 011316          386 IVTVCLEGLENILKAGE  402 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~  402 (488)
                      ||..|+++|+++.....
T Consensus       423 VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999986644

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.7e-10  Score=121.14  Aligned_cols=395  Identities=12%  Similarity=0.117  Sum_probs=244.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH-----------
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL-----------   98 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L-----------   98 (488)
                      +.++.+++.|.+.++++|..|+++|..++..-++...     ..+++.|+..+.+++ ...+..+..+|           
T Consensus        45 ~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-----~~l~~~L~~~l~~~~-~~~r~~~~~~L~~i~~~l~~~~  118 (1207)
T d1u6gc_          45 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-----ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPAS  118 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-----HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhcCCc-hhhhHHHHHHHHHHHHhccccc
Confidence            6788999999999999999999999988765422211     123445555444444 34444443333           


Q ss_pred             -------------------------------------HHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHh
Q 011316           99 -------------------------------------TNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG  141 (488)
Q Consensus        99 -------------------------------------~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~  141 (488)
                                                           ..+....+..-.. ....+++.++..+.++++.+|..|+.+|+
T Consensus       119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~  197 (1207)
T d1u6gc_         119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALG  197 (1207)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                                 3332210000000 00124556666777889999999999999


Q ss_pred             hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316          142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC  221 (488)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al  221 (488)
                      .++...+.   .. -...+..++..+..+.+...+..++.++..++...+..-......+++.+...+.+.+..++..++
T Consensus       198 ~l~~~~~~---~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al  273 (1207)
T d1u6gc_         198 HLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI  273 (1207)
T ss_dssp             HHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred             HHHHHCCH---HH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            99865432   11 123466777777566666677778888888887654433345578899999999999999999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHh-------------------------------------cCCCCcchHhHHHH
Q 011316          222 WALSYLSDGTNDKIQAVIEAGVCPRLVEL-------------------------------------LRHPSPSVLIPALR  264 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-------------------------------------L~~~~~~v~~~a~~  264 (488)
                      .++..++...+........ .+++.+...                                     ..+..+.+|..++.
T Consensus       274 ~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~  352 (1207)
T d1u6gc_         274 QAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK  352 (1207)
T ss_dssp             HHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHH
T ss_pred             HHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHH
Confidence            9998887554332221111 111111111                                     12234678999999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CH-H-------------HHHHHH--Hc
Q 011316          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NV-N-------------QIQAII--EA  326 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~-~-------------~~~~l~--~~  326 (488)
                      +|..+....++......+ .+++.++..+.+. ++.+|..+..++..+...  .. .             ....+.  -.
T Consensus       353 ~L~~l~~~~~~~l~~~~~-~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  430 (1207)
T d1u6gc_         353 CLDAVVSTRHEMLPEFYK-TVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP  430 (1207)
T ss_dssp             HHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhH
Confidence            999998876655444433 6888999999888 889999999888877641  00 0             000111  12


Q ss_pred             CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhhhh
Q 011316          327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      .+++.+.+.+.+.+..++..+..++..+..........++.  ..++.+...+...  ...++..++.++..++......
T Consensus       431 ~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~  508 (1207)
T d1u6gc_         431 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ  508 (1207)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHH
Confidence            35667777778888999999999998886533211112211  1355566666543  3467778888888887643322


Q ss_pred             hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .          +...+  ......+.....++..++...|...+..+.
T Consensus       509 ~----------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l~  544 (1207)
T d1u6gc_         509 V----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLV  544 (1207)
T ss_dssp             G----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             H----------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHHH
Confidence            1          12222  223555666677778888777776665544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=8.7e-09  Score=106.50  Aligned_cols=388  Identities=12%  Similarity=0.080  Sum_probs=244.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH-
Q 011316           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV-  112 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~-  112 (488)
                      |...+.|+|+.+|..|-..|.++....         ..+++..|.+.+.+.+ +..+|..|+..|.+............ 
T Consensus        10 L~~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1          10 LENSILSPDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcC---------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            344567999999999999999876532         1246677888886643 36789999988888775332211100 


Q ss_pred             -----------HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316          113 -----------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       113 -----------~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~  180 (488)
                                 ....+-..++..+.++++.+|..++.+++.++... |..+  .  ...++.++..+..+.+..++..++
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHH
Confidence                       01123456677788889999999999999987421 1000  0  014566777774455667888899


Q ss_pred             HHHHHhhcCCCCCChh---hhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCCC
Q 011316          181 WTLSNFCRGKPQPLFE---QTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~---~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~  254 (488)
                      .++..++.........   .....+..++..+.+  .+..++..++.++.++...-..... ......+++.+...+.++
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE  236 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence            9999998765322222   223455555555543  4678999999999988765432211 112224567788888999


Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---------
Q 011316          255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---------  325 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---------  325 (488)
                      ++.++..++.++..++...+......+..-+...+....++. ++.++..++..+..++............         
T Consensus       237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  315 (861)
T d2bpta1         237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY  315 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999999876554443333322333344455566 8889999988888776531111111110         


Q ss_pred             -------cCChHHHHHHHhcC-------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011316          326 -------AGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       326 -------~~~l~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al  391 (488)
                             ..+++.+...+...       +...+..+..++..++..........     ..+.+...+.+.++..+..++
T Consensus       316 ~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~  390 (861)
T d2bpta1         316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAAV  390 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHH
Confidence                   12455555655432       33567777777777764332222222     244555677788999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      .++..+........          ....+.  ..++.+...+.++++.|+..+.+.+.++.+
T Consensus       391 ~~l~~i~~~~~~~~----------~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         391 MAFGSIMDGPDKVQ----------RTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHTSSSSCHHH----------HHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhh----------HHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            88887765433211          122222  236778888899999999999999887654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.3e-09  Score=112.92  Aligned_cols=397  Identities=12%  Similarity=0.161  Sum_probs=231.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+...+.+++...+..++..+..+.... ........-...++.+++.+.+++ +.+|..++++++.++...+.   .+.
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~  447 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SID  447 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhh
Confidence            3344556788899999999999877654 222222223457899999999998 99999999999998762211   111


Q ss_pred             hCCCHHHHHHhhC---CCCHHHHHHHHHHHhhhhCC----Cch-hHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHH
Q 011316          114 DHGAVPIFVRLLS---SPTDDVREQAVWALGNVAGD----SPK-CRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLS  184 (488)
Q Consensus       114 ~~g~i~~L~~lL~---~~~~~~~~~a~~~L~~l~~~----~~~-~~~~~~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~  184 (488)
                      ....++.++..+.   ..++.++..+++++..++..    ... ......  ..+..++.... ...+..++..+..++.
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~  525 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            2233444444321   35678888888887777521    111 111111  12334444442 2345678888888888


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhc----cCC-----------hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316          185 NFCRGKPQPLFEQTRPALPALERLIH----SND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~ll~----~~~-----------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      .+....+.........+.+.+...+.    ...           ..++..++.++..+............+ .+++.+..
T Consensus       526 ~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T d2bpta1         526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhh
Confidence            88776544333333344444433332    111           123444445555544322222221221 45566666


Q ss_pred             hcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011316          250 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  328 (488)
Q Consensus       250 lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  328 (488)
                      .+.. .+..++..++.+++.++..........++ .+++.+...+++. ++.++..|+.+++.++....+....... .+
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i  681 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HH
Confidence            6654 45678889999999988765544443333 5788888889888 8899999999999998743443333333 37


Q ss_pred             hHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC----C-------HHHHHHHHHHHH
Q 011316          329 IGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP----D-------PRIVTVCLEGLE  395 (488)
Q Consensus       329 l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~----~-------~~v~~~al~~L~  395 (488)
                      ++.|++.+.++  +..+|..++.+++.++........+++-+  +++.+.+.+...    +       ..+++.++.++.
T Consensus       682 ~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  759 (861)
T d2bpta1         682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            88888888875  56889999999999986443344444332  455555555432    1       246677777777


Q ss_pred             HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc----CCCHHHHHHHHHHHHHhcC
Q 011316          396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS----HDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~----~~~~~v~~~a~~~l~~~~~  453 (488)
                      .++........     ...++...+     ++.+..+..    +.+.++...+..++..+..
T Consensus       760 ~i~~~~~~~~~-----~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~  811 (861)
T d2bpta1         760 GIVAGLHDKPE-----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHTTTCHH-----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHH-----HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHHHH
Confidence            76543221110     001122222     233333332    3467788888888766554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.3e-08  Score=102.36  Aligned_cols=401  Identities=13%  Similarity=0.073  Sum_probs=247.1

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHH----------HHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011316           30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPIN----------EVIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~----------~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +-+..|.+.+.+  .+..+|..|+..|.+.+.........          .-....+...+++.+.+++ . ++..++.+
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~-~-~~~~~a~~  112 (876)
T d1qgra_          35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET-Y-RPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC-S-SSCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc-H-HHHHHHHH
Confidence            345556666654  35789999999999987643111100          1112334566778887766 3 45567888


Q ss_pred             HHHhcCCC-chhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccH
Q 011316           98 LTNIASGT-SENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKL  173 (488)
Q Consensus        98 L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~  173 (488)
                      ++.++... |...    =.++++.+...+.+  .+..++..++.+|..++..-......-.....++.++..+.. +.+.
T Consensus       113 i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~  188 (876)
T d1qgra_         113 VAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN  188 (876)
T ss_dssp             HHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred             HHHHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccH
Confidence            88887521 1000    02578889888865  447889999999999975322110000111245666666633 3456


Q ss_pred             hHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011316          174 SMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  251 (488)
                      .++..++.++.+......  .........+++.+...+.+++++++..++.++..+.....+.........+...+....
T Consensus       189 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (876)
T d1qgra_         189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (876)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            788889888887765431  112222344667777888889999999999999999876665555555545666677777


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHH--------------------HhhCCChHHHHHHhccc------chhhHHHHH
Q 011316          252 RHPSPSVLIPALRTVGNIVTGDDMQTQC--------------------IINHQALPCLLDLLTQN------YKKSIKKEA  305 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------~~~~~~~~~L~~lL~~~------~~~~v~~~a  305 (488)
                      .+..+.++..++..+..++.........                    .....+++.+...+...      .+..++..|
T Consensus       269 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  348 (876)
T d1qgra_         269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHH
Confidence            8888888888888877776422111000                    00112233333333221      133577788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  385 (488)
                      ..++..++......   ++. .+++.+...+.+.++..+..++.+++.+.............. ..++.+...+.++++.
T Consensus       349 ~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         349 GVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCccH
Confidence            88877776521111   111 134556666777889999999999999987766554443322 4788888999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      ++..+++++..++.........      ..+...     .+..+....+ +++.++..+...+..+.+
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~------~~~~~~-----~~~~l~~~l~-~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         424 VRDTAAWTVGRICELLPEAAIN------DVYLAP-----LLQCLIEGLS-AEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSS------TTTHHH-----HHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcchhhhh------HHHhhh-----HHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            9999999999998765432210      001111     1333444443 468888888887776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.5e-08  Score=101.33  Aligned_cols=315  Identities=14%  Similarity=0.145  Sum_probs=191.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      ++.+.+.+.+++...+..++..+..+.......... -.....++.+...+.+++ +.++..++++++.++...+..   
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~---  442 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEA---  442 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGG---
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHHcchh---
Confidence            444556667888889988888888876544222222 223457889999999998 999999999999998633321   


Q ss_pred             HHhCC----CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch---------------hHHHHHhcCChHHHHHHhcc--c
Q 011316          112 VIDHG----AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK---------------CRDLVLSNGALMPLLAQFNE--H  170 (488)
Q Consensus       112 ~~~~g----~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~---------------~~~~~~~~~~i~~l~~~l~~--~  170 (488)
                      .....    .++.+...+. +++.++..+++++.+++.....               .....  ...+..++..+..  .
T Consensus       443 ~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~~~l~~~~~~~~~  519 (876)
T d1qgra_         443 AINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG  519 (876)
T ss_dssp             TSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS
T ss_pred             hhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence            11122    2444444443 4788999999999988632100               00000  0123444555532  2


Q ss_pred             ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----cC------C-----hhHHHHHHHHHHHhccCCchhH
Q 011316          171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SN------D-----DEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----~~------~-----~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      ....++..+..++..+...............++.+...+.    ..      .     ...+...+.++..+........
T Consensus       520 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  599 (876)
T d1qgra_         520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD  599 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            3456788888888888776654444444444444444332    11      1     1223445555555554433221


Q ss_pred             HHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316          236 QAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      ..-....+++.+..++..  ++..++..++.+++.++..........++ .+++.+...+++..++.++..|+.+++.++
T Consensus       600 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~-~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~  678 (876)
T d1qgra_         600 ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            111112456667777654  45678889999999888654443333222 467788888877656789999999999887


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011316          314 AGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS  356 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~  356 (488)
                      ............ .+++.++..++++  +..++..++++++.++.
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHhHHhhhhhHH-HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            643333333333 4788888888765  56789999999988764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=4.3e-07  Score=83.41  Aligned_cols=339  Identities=12%  Similarity=0.125  Sum_probs=199.3

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH---HHHhC--CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011316           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR---VVIDH--GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~  147 (488)
                      ..+..++++|...+.+++....+..+..+...++....   .+.+.  ..-..+...+.+++.-....+...+..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            46888999998765588888888888887765443222   11121  12345556666677777777888888887654


Q ss_pred             chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011316          148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALS  225 (488)
Q Consensus       148 ~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~v~~~al~~L~  225 (488)
                      .......-...-...++..+...++...+..++.++..+...++.....  .....++.++..++.              
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~--------------  219 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQR--------------  219 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHH--------------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHH--------------
Confidence            3322211110011223333335556666667777777776654222221  122334444444431              


Q ss_pred             HhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHhhC--CChHHHHHHhcccchhhHH
Q 011316          226 YLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIK  302 (488)
Q Consensus       226 ~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~lL~~~~~~~v~  302 (488)
                       ....+           ....++... ......++..++.+++-++. ++.....+.+.  +.++.++.+++....+++.
T Consensus       220 -a~~~~-----------~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvv  286 (477)
T d1ho8a_         220 -ATDSQ-----------LATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVS  286 (477)
T ss_dssp             -HHC------------------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred             -Hhccc-----------ccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence             11110           111111111 11234678899999999987 45555555554  3478888888766588999


Q ss_pred             HHHHHHHHHHhcCC----HH-HHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhccCC----------------
Q 011316          303 KEACWTISNITAGN----VN-QIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG----------------  358 (488)
Q Consensus       303 ~~a~~~L~nl~~~~----~~-~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~----------------  358 (488)
                      +-++.++.|+....    .. ....++..++++.+ ..|...   |+++... +..|.......                
T Consensus       287 Rv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l-~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~S  364 (477)
T d1ho8a_         287 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTV-QSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDS  364 (477)
T ss_dssp             HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHH-HHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHH-HHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence            99999999998731    11 23335556666554 555543   6665432 22222222100                


Q ss_pred             -----CHHHH-HHHHH----------CCChHHHHhhcC----------CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCc
Q 011316          359 -----SNEQI-KFLVS----------QGCIKPLCDLLN----------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGG  412 (488)
Q Consensus       359 -----~~~~~-~~l~~----------~~~~~~L~~ll~----------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~  412 (488)
                           +|-+. ..+..          -.+++.|+++|+          +.|+.+...||.=++.+++.-+..        
T Consensus       365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g--------  436 (477)
T d1ho8a_         365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES--------  436 (477)
T ss_dssp             TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH--------
T ss_pred             CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch--------
Confidence                 11111 11111          134778888885          346677788888888888876643        


Q ss_pred             cchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316          413 VNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       413 ~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                          +..+++.|+-+.+.++++|+|++|+..|..+++++.
T Consensus       437 ----r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         437 ----IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             ----HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                778899999999999999999999999999998763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.3e-07  Score=85.23  Aligned_cols=276  Identities=13%  Similarity=0.109  Sum_probs=181.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..|+.++..+.. .++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            44566666777777778888888877654 22222111 1122333434445566 7888889999999998 8899998


Q ss_pred             HHhC--CCHHHHHHhhCC-----------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhc--CChHHHHHHhccc
Q 011316          112 VIDH--GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFNEH  170 (488)
Q Consensus       112 ~~~~--g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~  170 (488)
                      +.+.  ..++.++..++.                 ....++..++.+++-++.+.. ....+.+.  +.++.++.++..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhh
Confidence            8643  345555555532                 124778889999999987543 44555444  3477888888778


Q ss_pred             ccHhHHHHHHHHHHHhhcCCCCCC------hhhhhchHHHHHHhhcc---CChhHHHHHHHHHH-------Hhcc-----
Q 011316          171 AKLSMLRNATWTLSNFCRGKPQPL------FEQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSD-----  229 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~~~------~~~~~~~~~~L~~ll~~---~~~~v~~~al~~L~-------~l~~-----  229 (488)
                      ..+.+.+.++.++.|++.......      .+...++++. +..|..   .|+++....-..-.       .++.     
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~  359 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV  359 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            889999999999999987642211      1222344544 444442   35655433222111       1110     


Q ss_pred             ----------CCchhHHHHHHh----------CCHHHHHHhcC----------CCCcchHhHHHHHHhHhhcCCchhhHH
Q 011316          230 ----------GTNDKIQAVIEA----------GVCPRLVELLR----------HPSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       230 ----------~~~~~~~~~~~~----------~~l~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                                .+....+.+...          .++..|+.+|+          +.++.+..-||.=++.++++.|..+..
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~i  439 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV  439 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHH
Confidence                      111111222211          36788888885          235667788999999999999988888


Q ss_pred             HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316          280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      +-+.|+-..+++++.++ +++||.+|+.++..+..
T Consensus       440 l~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         440 LDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            88889999999999999 99999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.45  E-value=2.8e-08  Score=74.45  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=88.4

Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011316          251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  330 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  330 (488)
                      |.++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            467788899999888876531            3467788999988 99999999999987642  22         578


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011316          331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      .|..+++++++.||..|+++|+.+.   ++.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8999999999999999999999984   222         4677778999999999999988874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.34  E-value=7.7e-08  Score=71.98  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=88.6

Q ss_pred             hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChH
Q 011316           82 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  161 (488)
Q Consensus        82 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  161 (488)
                      |++++ +.+|..|+++|+.+..            ..++.|+..+.++++.+|..++++|+++..  +         +.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHH
Confidence            35566 7888888888766532            357889999999999999999999998742  1         2467


Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011316          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS  225 (488)
Q Consensus       162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~  225 (488)
                      .+...+ .+.++.++..++++|..+..          ...++.+..+++++++.++..++.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 78899999999999998743          467888999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.0047  Score=52.71  Aligned_cols=241  Identities=10%  Similarity=0.105  Sum_probs=169.1

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh----HHHHHHh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK----IQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~----~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+.+..++..|..-+-+.+..+..+..++.+...+.    .+.+... +++..|+..-.  ++++...+-..|..++. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik-~  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHh-h
Confidence            467778888888888999999999999888654322    2333322 34444444443  45666666667777666 5


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHHHH
Q 011316          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      +...+.++....+..+.+.++.+ +.++...|..++..+...++.....++..+   ++.....++.+++.-+|..++..
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            66777888888899999999999 999999999999998886677666666543   57777888999999999999999


Q ss_pred             HHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--ccH
Q 011316          351 ISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--EGL  426 (488)
Q Consensus       351 L~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~  426 (488)
                      |+.+......  -..+++.+..-+..++.+|+++...++..|..++.-++....+..         ++...+...  ..+
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~---------~I~~IL~~Nr~kLl  294 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ---------PILDILLKNQAKLI  294 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH---------HHHHHHHHTHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCH---------HHHHHHHHhHHHHH
Confidence            9999864422  233455555679999999999999999999888876665544332         256666544  245


Q ss_pred             HHHHHhhcC--CCHHHHHHHHHHHHHhc
Q 011316          427 EKIENLQSH--DNTEIYEKAVKILETYW  452 (488)
Q Consensus       427 ~~l~~l~~~--~~~~v~~~a~~~l~~~~  452 (488)
                      +.|.++..+  +++.....-..++..+-
T Consensus       295 ~fl~~f~~d~~~DeqF~~EK~~lI~~I~  322 (330)
T d1upka_         295 EFLSKFQNDRTEDEQFNDEKTYLVKQIR  322 (330)
T ss_dssp             HHHHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCchhhHHHHHHHHHHHHH
Confidence            566666543  24444444344444443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0059  Score=52.10  Aligned_cols=201  Identities=14%  Similarity=0.084  Sum_probs=145.9

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh----hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.+...+.+..|+..|..-+.+.|..+..+.+++.+.....    ...+...  .+.+..++..-+++++-..+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            44666688899999998888889999999999998754332    2333321  23444444443356677777777887


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHHH
Q 011316          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~  388 (488)
                      ++.+ ......++...-+..+++.++.++.++...|..++..+.... +.....+...   .....+..++.+++.-++.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            7776 777788888888999999999999999999999999988765 3433333333   3466777899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011316          389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  449 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~  449 (488)
                      +++..|+.++........         ....+.+..-++.+..++.+++..++-.|-.+..
T Consensus       219 qSlKLLgelLldr~N~~v---------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFK  270 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  270 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHH---------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhh
Confidence            999999999865554321         3445555556788888888888888777665544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.022  Score=58.29  Aligned_cols=403  Identities=10%  Similarity=0.068  Sum_probs=199.8

Q ss_pred             hhhccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC---C------CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHH
Q 011316           27 LQLESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIE---R------SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA   95 (488)
Q Consensus        27 ~~~~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~---~------~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~   95 (488)
                      ..-|-+..|+..+.++  +..+|..|+..|.+.+...   .      ++..+..++    ..++..|.+++ ..+|...+
T Consensus        32 ~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik----~~ll~~l~~~~-~~ir~~l~  106 (959)
T d1wa5c_          32 TQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK----KEIVPLMISLP-NNLQVQIG  106 (959)
T ss_dssp             TSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH----HHHHHHHHHSC-HHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHH----HHHHHHHhCCc-HHHHHHHH
Confidence            3335666777777654  4688999999999887642   0      111233333    34455555666 78999999


Q ss_pred             HHHHHhcCC-CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc------hhHHHH--HhcCChHHHHHH
Q 011316           96 WALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLV--LSNGALMPLLAQ  166 (488)
Q Consensus        96 ~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~--~~~~~i~~l~~~  166 (488)
                      .+++.++.. .|+..     .++++.+.+.++++++..+..++.++..++..-.      ......  ......+.+..+
T Consensus       107 ~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  181 (959)
T d1wa5c_         107 EAISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL  181 (959)
T ss_dssp             HHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccc-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHH
Confidence            999999872 12221     2578899999999889999999999998874311      111100  001122222322


Q ss_pred             hc-------cccc-H-------hHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhccCC---------------hh
Q 011316          167 FN-------EHAK-L-------SMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSND---------------DE  215 (488)
Q Consensus       167 l~-------~~~~-~-------~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~ll~~~~---------------~~  215 (488)
                      +.       .... .       .....+...+..+........ ..........+..++....               ..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  261 (959)
T d1wa5c_         182 LKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIK  261 (959)
T ss_dssp             HHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHH
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHH
Confidence            21       1111 0       111222223333322221100 0111233333444443221               13


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc----CC-CCcchHhHHHHHHhHhhcCCchhhH----HHhhCCCh
Q 011316          216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL----RH-PSPSVLIPALRTVGNIVTGDDMQTQ----CIINHQAL  286 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~-~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~~  286 (488)
                      ++...+..+..+....++....... .++..+...+    .. ....+...++..+..++........    ..+..-+.
T Consensus       262 ~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~  340 (959)
T d1wa5c_         262 VKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE  340 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            5555666666655544433332322 2333333333    12 2345666677777776653221110    00000011


Q ss_pred             HHHHHHhcc----------------------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChh
Q 011316          287 PCLLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFE  342 (488)
Q Consensus       287 ~~L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~  342 (488)
                      ..+...+..                      ......|..|...+..++...++.....+..-+...+......  .++.
T Consensus       341 ~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  420 (959)
T d1wa5c_         341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK  420 (959)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHH
T ss_pred             HHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchH
Confidence            112222211                      1012356666777777776444433222211111222222222  3667


Q ss_pred             HHHHHHHHHHHhccCCC------------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 011316          343 IKKEAAWAISNATSGGS------------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT  410 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~------------~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  410 (488)
                      .+..++.+++.+...+.            .+....+..  .+...........+.++..+++++........        
T Consensus       421 ~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~--~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~--------  490 (959)
T d1wa5c_         421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK--EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--------  490 (959)
T ss_dssp             HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH--HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--------
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHH--HHHHHHccCCCchHHHHHHHHHHHHHHHhhcc--------
Confidence            77888888887764321            011111111  12222222234456788888888877654322        


Q ss_pred             CccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011316          411 GGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       411 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                            ...+.  ..+..+..++.+++..|+..|...+.++....++.
T Consensus       491 ------~~~~~--~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~  530 (959)
T d1wa5c_         491 ------KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESN  530 (959)
T ss_dssp             ------HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred             ------HHHHH--HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhccc
Confidence                  12222  23677788888899999999999999998876553

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.90  E-value=0.00022  Score=59.63  Aligned_cols=41  Identities=15%  Similarity=0.159  Sum_probs=27.5

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHH
Q 011316           80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWA  139 (488)
Q Consensus        80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~  139 (488)
                      .+|.++. .++|..|++                  .-.+..|..+++++++.+|..++..
T Consensus        49 ~~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          49 QYLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             GGTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             HHhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            3556666 677755542                  1235677788888888888888754

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.084  Score=53.71  Aligned_cols=180  Identities=8%  Similarity=0.060  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh------------HHHHH
Q 011316           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC------------RDLVL  155 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~------------~~~~~  155 (488)
                      +.++..++++++..+.....  ..+  ..+++.++..|.+++..++..|++++..++......            ...+.
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67899999999998873321  111  246889999999999999999999999997532210            00010


Q ss_pred             hcCChHHHHHHhcccccH----hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----c-CChhHHHHHHHHHHH
Q 011316          156 SNGALMPLLAQFNEHAKL----SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSY  226 (488)
Q Consensus       156 ~~~~i~~l~~~l~~~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----~-~~~~v~~~al~~L~~  226 (488)
                        ..+..++..+......    .....++.++..+..............+++.+...+.    + .++.....+..++..
T Consensus       548 --~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~  625 (959)
T d1wa5c_         548 --ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA  625 (959)
T ss_dssp             --HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence              1233344444222111    1123455566555543333333344455555555543    2 256677777788887


Q ss_pred             hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316          227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      +..........-....+++.+...+..........++..+..+....
T Consensus       626 l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         626 ILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            76543222222333466788888887766677777777777766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.58  E-value=0.001  Score=55.44  Aligned_cols=114  Identities=11%  Similarity=0.136  Sum_probs=62.2

Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011316          244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                      +..|..+++++++.||..+...|.                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            466777888888888888865431                  12344555566 6677766554321             


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHH-----HHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011316          324 IEAGIIGPLVNLLLNAEFEIKKEAAWA-----ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  394 (488)
Q Consensus       324 ~~~~~l~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L  394 (488)
                           .+.|..++.++++.|+..++..     |..++...+.+.+......-..+.|..+++++++.++..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1223334444455555444432     22222223333333333334456677777777777777766543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.44  E-value=0.25  Score=43.11  Aligned_cols=207  Identities=14%  Similarity=0.120  Sum_probs=124.6

Q ss_pred             CHHHHHHhhCCCC--HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHHHhhc---
Q 011316          117 AVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCR---  188 (488)
Q Consensus       117 ~i~~L~~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~v~~~a~~~L~~l~~---  188 (488)
                      .+..+.+++.++.  ..-....+..+.....  |. .+      .+..+..++..   ..++.++..+..+++++..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4555666665533  3333333444443332  21 12      23445555521   2466777777777776654   


Q ss_pred             -CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-------CcchHh
Q 011316          189 -GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-------SPSVLI  260 (488)
Q Consensus       189 -~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~  260 (488)
                       ..+.........+...+.+.....+.+-+..++.+|+|+..  +         +.++.+..++...       ...+|.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence             33333333444555555566667777778888999999853  1         3456676776432       356899


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-
Q 011316          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-  338 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-  338 (488)
                      .|++++..++...+...        .+.+.+++. ...+.++|..|+..+... ..+..         .+..+...+.. 
T Consensus       229 aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            99999999987655332        244555553 333688999988888654 22233         34445555544 


Q ss_pred             CChhHHHHHHHHHHHhccCCCHH
Q 011316          339 AEFEIKKEAAWAISNATSGGSNE  361 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~~~~~  361 (488)
                      ++..|.......|.+++....|+
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcc
Confidence            47888888888999998766554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.01  E-value=0.37  Score=42.02  Aligned_cols=165  Identities=15%  Similarity=0.183  Sum_probs=108.8

Q ss_pred             HHHHHHhhCC----CCHHHHHHHHHHHhhhh----CCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHh
Q 011316          118 VPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       118 i~~L~~lL~~----~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l  186 (488)
                      +..+..++.+    .++.++..+.-++++++    ...+.+..     ..++.+...+.   ...+.+-+..++.+|+|+
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  199 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  199 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            5666677765    57888888888888775    23322222     23444444442   334556667788999998


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcc
Q 011316          187 CRGKPQPLFEQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPS  257 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~  257 (488)
                      ...          ..++.+..++...       ...++..|++++.++....+....        +.+..++.+  .+++
T Consensus       200 g~p----------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~E  261 (336)
T d1lsha1         200 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  261 (336)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCH----------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChH
Confidence            642          5677888887532       467999999999999876653322        334444433  5678


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      +|..|+..|...   +|..       ..+..+...+....+..|+......|.+++..
T Consensus       262 vRiaA~~~lm~t---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         262 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc---CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            998888877542   2322       23566777776666888999988899999884

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.36  E-value=0.094  Score=46.11  Aligned_cols=140  Identities=13%  Similarity=0.063  Sum_probs=99.9

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-HHH----------HHH
Q 011316          298 KKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQ----------IKF  365 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~----------~~~  365 (488)
                      +......++.+|..+... ......++ ..+.+..+...+.++.+.++..|...|..++.... ++.          ...
T Consensus        69 d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~  147 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  147 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            345677888899888775 44455544 46789999999999999999999999998875421 111          122


Q ss_pred             HHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011316          366 LVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  444 (488)
Q Consensus       366 l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a  444 (488)
                      ..+.+-...+++.++.. +.+.+..++..+..++...+....      ....+..|...|..+.+..+.+..++++..+-
T Consensus       148 ~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~------R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence            33456778888877754 567778888888877765443321      12257888999999999999888888876543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.86  Score=39.65  Aligned_cols=156  Identities=10%  Similarity=0.069  Sum_probs=98.4

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc----CC------CChhHHHHHHHHHHHhcC
Q 011316           35 MVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS----RD------DFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        35 l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~----~~------~~~~v~~~a~~~L~~l~~  103 (488)
                      .+..|++.- .......+.-|.--+.+.+...++.+ ..+|+..|+++|.    ..      .+...+..++.||..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            344454432 23333444444444555434445556 4556777777763    11      114578889999999998


Q ss_pred             CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC--chhHHH----------HHhcCChHHHHHHhcccc
Q 011316          104 GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDL----------VLSNGALMPLLAQFNEHA  171 (488)
Q Consensus       104 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~----------~~~~~~i~~l~~~l~~~~  171 (488)
                      ........+-..+.+..+...+.++.+.++..|+.+|..+|...  +.....          .-+.+-..+++..+....
T Consensus        86 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~  165 (343)
T d2bnxa1          86 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  165 (343)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred             cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc
Confidence            44444444556689999999999999999999999999998543  122222          223345677777775555


Q ss_pred             cHhHHHHHHHHHHHhhcCCC
Q 011316          172 KLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~  191 (488)
                      +.+.+..++..+-.+..+.+
T Consensus       166 ~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         166 SIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             CHHHHHHHHHHHHHHHTTCS
T ss_pred             cHHHHHHHHHHHHHHHcCcc
Confidence            66777777777766766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.64  Score=34.63  Aligned_cols=92  Identities=7%  Similarity=-0.080  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC--
Q 011316          304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--  381 (488)
Q Consensus       304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--  381 (488)
                      .+..-++.+....+....     .++..|..-+.++++.++..|+..|-.++.++++.....+.+.+++..|..++..  
T Consensus        27 ~~ileicD~I~~~~~~~k-----~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~  101 (145)
T d1ujka_          27 ASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY  101 (145)
T ss_dssp             HHHHHHHHHHTSSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhcc
Confidence            444445555543332211     2455677778888999999999999999999999998998888999999998863  


Q ss_pred             ----CCHHHHHHHHHHHHHHHHh
Q 011316          382 ----PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       382 ----~~~~v~~~al~~L~~l~~~  400 (488)
                          .+..|+..++..+..-...
T Consensus       102 ~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_         102 LGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHH
Confidence                4567888888888766443

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.22  E-value=0.66  Score=34.61  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~  449 (488)
                      ++..|..-+.++++.++..|+..|..+++.+...           |...+.+.+.++.+..+.+ ..+..|+++...++.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~-----------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH-----------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4666777788999999999999999999876543           5666666667777777754 457889999999999


Q ss_pred             HhcCCCCC
Q 011316          450 TYWVEEDE  457 (488)
Q Consensus       450 ~~~~~~~~  457 (488)
                      .+...-..
T Consensus       112 ~W~~~f~~  119 (145)
T d1dvpa1         112 TWAYAFRS  119 (145)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhCC
Confidence            88776544

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=1.6  Score=37.59  Aligned_cols=217  Identities=12%  Similarity=0.048  Sum_probs=105.4

Q ss_pred             CCCChhHHHHHHHHHHHhcC---CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011316           84 RDDFPQLQFEAAWALTNIAS---GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  160 (488)
Q Consensus        84 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  160 (488)
                      +++||.++. +-..+..+..   -++......+....+..|+.++.++++.=|.....+|.++-..-...|..+.. ...
T Consensus        99 e~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~  176 (343)
T d2jaka1          99 EAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QIN  176 (343)
T ss_dssp             CTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred             CCCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHH
Confidence            445565544 2334444443   12233333445556788899999999999999999998886555555554433 233


Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCCchhHHHH
Q 011316          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAV  238 (488)
Q Consensus       161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~  238 (488)
                      ..+.+.+..+....-...++..++.+..+-.. -......-....++.+.+...- ..-.....++......++.....+
T Consensus       177 ~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~  256 (343)
T d2jaka1         177 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV  256 (343)
T ss_dssp             HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            44555554444444455667777777766422 2333333444555555554332 122333333333333333332222


Q ss_pred             HHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316          239 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       239 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      +     ..+++.==..++.-...-+.-+..+....+. ..+.+. ..++..+-+.++++ +..|-+.|+...
T Consensus       257 i-----~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         257 V-----MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             H-----HHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             H-----HHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            1     1122211112222222334444444332222 222111 13455556666666 666666655443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.74  Score=34.21  Aligned_cols=73  Identities=8%  Similarity=-0.094  Sum_probs=60.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011316          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~  400 (488)
                      ++..|..-+.++++.++..|+..|-.++.++++.....+....+++.|.+++..      .++.|+..++..+......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            455566778888999999999999999999988888888888899999998863      4678998888888766443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=1.9  Score=31.83  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=58.1

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+.+.++.+..+..      ..+.+|+.+.
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~-----------fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~ki  107 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV  107 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence            4666777788899999999999999998876432           6777777788888888864      3578999999


Q ss_pred             HHHHHHhcCCC
Q 011316          445 VKILETYWVEE  455 (488)
Q Consensus       445 ~~~l~~~~~~~  455 (488)
                      ..++..+...-
T Consensus       108 l~li~~Wa~~f  118 (143)
T d1mhqa_         108 IEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            99998775544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.05  E-value=0.37  Score=36.06  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+.|++.++.+++.|+..|-.+..+-+......+...+++..|.+++++.....++..++..+...+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            46777888889999999999999999988765344455555677888888888765447899998888877654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=2  Score=32.09  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+...++.+..+...      .+..|+++.
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~-----------F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~ki  108 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  108 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH-----------HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHH
Confidence            4666777778899999999999999998876543           56777777778888888653      478899999


Q ss_pred             HHHHHHhcCCC
Q 011316          445 VKILETYWVEE  455 (488)
Q Consensus       445 ~~~l~~~~~~~  455 (488)
                      ..++..+....
T Consensus       109 l~ll~~Wa~~f  119 (151)
T d1juqa_         109 IELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            99998876543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.71  E-value=1.6  Score=32.29  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=58.0

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011316          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+.+.++.|..+..      ..+..|+.+.
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~-----------f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~ki  114 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI  114 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH-----------HHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHH
Confidence            4666777788899999999999999888775432           6777778888888888864      3678999999


Q ss_pred             HHHHHHhcCC
Q 011316          445 VKILETYWVE  454 (488)
Q Consensus       445 ~~~l~~~~~~  454 (488)
                      ..++..+...
T Consensus       115 l~li~~W~~~  124 (145)
T d1ujka_         115 LELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887543