Citrus Sinensis ID: 011317
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SDA8 | 656 | F-box/LRR-repeat protein | yes | no | 0.952 | 0.708 | 0.608 | 1e-159 | |
| Q9ZWC6 | 607 | F-box protein At-B OS=Ara | no | no | 0.793 | 0.637 | 0.372 | 9e-63 | |
| Q9UKC9 | 423 | F-box/LRR-repeat protein | yes | no | 0.510 | 0.588 | 0.286 | 1e-14 | |
| A1A5X2 | 489 | F-box/LRR-repeat protein | yes | no | 0.514 | 0.513 | 0.266 | 1e-14 | |
| Q5R3Z8 | 423 | F-box/LRR-repeat protein | yes | no | 0.510 | 0.588 | 0.286 | 2e-14 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | yes | no | 0.440 | 0.508 | 0.298 | 1e-13 | |
| C8V4D4 | 585 | SCF E3 ubiquitin ligase c | yes | no | 0.581 | 0.485 | 0.243 | 7e-13 | |
| A6H779 | 423 | F-box/LRR-repeat protein | yes | no | 0.510 | 0.588 | 0.271 | 1e-12 | |
| Q5BJ29 | 491 | F-box/LRR-repeat protein | no | no | 0.514 | 0.511 | 0.25 | 1e-12 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | no | no | 0.491 | 0.550 | 0.267 | 1e-11 |
| >sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 286/470 (60%), Positives = 366/470 (77%), Gaps = 5/470 (1%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+ L LMFD+SL+LR R++ L S++LT LE+G+I+S M+T+LL+ Q N++
Sbjct: 170 EVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRVTT 229
Query: 65 S-ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN 123
S +L +Q+L LSVD ITDA+V IS+ L SL LD+RDAPL +PR DLT+ GL +IN
Sbjct: 230 STVLQNVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEIN 289
Query: 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 183
Q+GKLKHLSLIRSQEF TYFRRV+D G+L +ADKC ME+ICLGGFCRVTD GFKTILH
Sbjct: 290 QNGKLKHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILH 349
Query: 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLD 243
SC++L K + HG +LTDLVFHDI AT+LSL+HV LR C+LLT+HAI+ LAS+ ++ LD
Sbjct: 350 SCASLSKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLD 409
Query: 244 LRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 303
LR C+NL DE L A+S LP+LK+LLLDG+DISD G+SYL+ V+ SLV LS+RGC+ LTD
Sbjct: 410 LRGCRNLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTD 469
Query: 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 363
K +S LFDG+SKL L+ELDLSNLP+L+D I LA PI++L++R+C LIGD SV+AL
Sbjct: 470 KFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMAL 529
Query: 364 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALA 423
AS V +D GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+DALA
Sbjct: 530 ASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALA 589
Query: 424 RSRPFLNVACRGEELG---VDQWDNSDGMYMHDYDEVDELEQWLMEGEDE 470
R RP L V+CRGEELG D WD++D ++ H + DELEQW++ E +
Sbjct: 590 RRRPHLQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGD 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZWC6|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 228/400 (57%), Gaps = 13/400 (3%)
Query: 54 EPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD 113
+P + + PS +Q L L +D I+D ++ I+ L L LDL D P EP D
Sbjct: 205 QPDYNSALLSPSPSFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDND 264
Query: 114 LTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRV 173
LT +GLQ + +L LSL+R+ F+R+ND+GI L+++ C +ES+ LGGF +V
Sbjct: 265 LTYTGLQALGFCQQLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKV 324
Query: 174 TDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL 233
+D GF ++LHSC NL K V L+DL FHD++ +S SL V L C L+T+ A+K L
Sbjct: 325 SDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKL 384
Query: 234 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKL 293
++VLDL CK++ D L ++S+L +L L L G+D++D G+ L + + + +L
Sbjct: 385 GLCGNLEVLDLGSCKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDV-PITQL 443
Query: 294 SLRGCKRLTDKCISALF--DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQ 351
SLRGC+R++D+ IS L +GT L LDL ++P +SD I T+ C ++EL +R
Sbjct: 444 SLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRS 503
Query: 352 CPLIGDTSVIALASMLVDDDRWYGSS--IRLLDLYNCGGITQLAFRWLKKPYFPRLRWLG 409
C + D+S+ +LA+ + + G S +R L+++NC +T A RWL KP F L WLG
Sbjct: 504 CFHVTDSSIESLATW---ERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLG 560
Query: 410 VT----GSVNRDILDALARSRPFLNVACRGEELGV-DQWD 444
+ + + RP+L + G ELG D W+
Sbjct: 561 MGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDGWE 600
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 27/276 (9%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSLPQ-- 263
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I +
Sbjct: 151 ISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHEL 210
Query: 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
+ + L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 211 VSLNLQSCSRITDEGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQILEA 267
Query: 324 SNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA--------------SMLVD 369
+ HL+D G LA + ++ + +C LI D+++I L+ ++ D
Sbjct: 268 ARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITD 327
Query: 370 DDRWYGSS-------IRLLDLYNCGGITQLAFRWLK 398
D + S+ +R+L+L NC IT +A L+
Sbjct: 328 DGILHLSNSTCGHERLRVLELDNCLLITDVALEHLE 363
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Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication. Homo sapiens (taxid: 9606) |
| >sp|A1A5X2|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 136/300 (45%), Gaps = 49/300 (16%)
Query: 137 QEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVS-- 194
+ +++ RR+ D G+ +A C + + + G V++ ++ C NL L VS
Sbjct: 187 ETVMVSGCRRLTDRGLYTVAQSCPELRRLEVAGCYNVSNEAVFEVVSRCPNLEHLDVSGC 246
Query: 195 -------------------HGTQLT-------------DLVFHDISATSLSLTHVCLRWC 222
HG Q++ D H I+A LTH+ LR C
Sbjct: 247 SKVTCISLTRDVSVKLSPLHGQQISIRFLDMTDCFALEDEGLHTIAAHCTQLTHLYLRRC 306
Query: 223 NLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLP-QLKIL-LLDGSDISDVGV 279
LT+ ++ L G++ L + DC+ + D LR I+ L +L+ L + S I+DVGV
Sbjct: 307 VRLTDEGLRFLVIYCPGVRELSVSDCRFISDFGLREIAKLEGRLRYLSIAHCSRITDVGV 366
Query: 280 SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339
Y+ + L L+ RGC+ LTD I L S L+L+ LD+ P +SD G+ LA
Sbjct: 367 RYV-AKYCSRLRYLNARGCEGLTDHGIEHL--AKSCLKLKSLDIGKCPLVSDAGLEQLAL 423
Query: 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK 399
+ L ++ C I + +A+ D ++LL++ +C ++ A R++K+
Sbjct: 424 NSFNLKRLSLKSCESITGRGLQVVAANCFD--------LQLLNVQDC-DVSLEALRFVKR 474
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Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Danio rerio (taxid: 7955) |
| >sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 27/276 (9%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSLPQ-- 263
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I +
Sbjct: 151 ISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHEL 210
Query: 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
+ + L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 211 VSLNLQSCSRITDEGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQILEA 267
Query: 324 SNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA--------------SMLVD 369
+ HL+D G LA + ++ + +C LI D+++I L+ ++ D
Sbjct: 268 ARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITD 327
Query: 370 DDRWYGSS-------IRLLDLYNCGGITQLAFRWLK 398
D + S+ +R+L+L NC IT +A L+
Sbjct: 328 DGILHLSNSTCGHERLRVLELDNCLLITDVALEHLE 363
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Pongo abelii (taxid: 9601) |
| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 6/221 (2%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSLPQ-- 263
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I +
Sbjct: 151 ISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHEL 210
Query: 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
+ + L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 211 VSLNLQSCSRITDDGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQVLEA 267
Query: 324 SNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA + ++ + +C LI D++++ L+
Sbjct: 268 ARCSHLTDAGFTLLARNCHELEKMDLEECVLITDSTLVQLS 308
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Mus musculus (taxid: 10090) |
| >sp|C8V4D4|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 41/325 (12%)
Query: 137 QEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196
Q ++ R + D + +A+ C ++ + + G +VTD + +C L +L+++
Sbjct: 191 QALDVSELRSLTDHTLFKVAENCNRLQGLNITGCVKVTDDSLIAVSQNCRLLKRLKLNGV 250
Query: 197 TQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN-------------------- 236
+Q+TD + S+ + L+ C L+TN ++ +L +
Sbjct: 251 SQVTDKAILSFAQNCPSILEIDLQECKLVTNQSVTALMTTLQNLRELRLAHCTEIDDSAF 310
Query: 237 ---------TGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSD-ISDVGVSYLRLT 285
T +++LDL C+N+ DEA+ R +SS P+L+ L+L I+D V +
Sbjct: 311 LDLPRHIQMTSLRILDLTACENIRDEAVERIVSSAPRLRNLVLAKCKFITDRAV-WAICK 369
Query: 286 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP-I 344
+ +L + L C + D + L ++++ +DL+ L+D + LAT +P +
Sbjct: 370 LGKNLHYVHLGHCSNINDSAVIQLVKSCNRIRY--IDLACCSRLTDRSVQQLAT--LPKL 425
Query: 345 SELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR 404
+ + +C LI D S++ALA D SS+ + L C +T + L PR
Sbjct: 426 RRIGLVKCQLITDASILALARP-AQDHSVPCSSLERVHLSYCVNLTMVGIHALLNSC-PR 483
Query: 405 LRWLGVTGSVN--RDILDALARSRP 427
L L +TG R+ L R P
Sbjct: 484 LTHLSLTGVAAFLREELTVFCREAP 508
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Involved in meiosis and required for ascospore formation. Involved in substrate recognition in ubiquitin-dependent degradation. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 27/276 (9%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSLPQ-- 263
IS L ++ L WC+ +T +++L G++ L LR C L DEAL+ I +
Sbjct: 151 ISEGCRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHEL 210
Query: 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
+ + L S ++D GV L L L L GC LTD ++AL +LQ+ L+
Sbjct: 211 VSLNLQSCSRVTDDGVVQL-CRGCPRLQALCLSGCGSLTDASLTALALNCPRLQI--LEA 267
Query: 324 SNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA--------------SMLVD 369
+ HL+D G LA + ++ + +C LI D ++ L+ ++ D
Sbjct: 268 ARCSHLTDAGFTLLARNCHDLEKMDLEECILITDRTLTQLSIHCPKLQALSLSHCELITD 327
Query: 370 DDRWYGSS-------IRLLDLYNCGGITQLAFRWLK 398
D + S+ +R+L+L NC IT +A L+
Sbjct: 328 DGILHLSNSPCGHERLRVLELDNCLLITDVALEHLE 363
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Bos taurus (taxid: 9913) |
| >sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 49/300 (16%)
Query: 137 QEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVS-- 194
+ +++ RR+ D G+ +A C + + + G +++ ++ C NL L VS
Sbjct: 189 ETVIVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGC 248
Query: 195 -------------------HGTQLT-------------DLVFHDISATSLSLTHVCLRWC 222
HG Q++ D H I+A LTH+ LR C
Sbjct: 249 SKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRC 308
Query: 223 NLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSL-PQLKIL-LLDGSDISDVGV 279
LT+ ++ L T IK L + DC+ + D LR I+ L +L+ L + I+DVG+
Sbjct: 309 VRLTDEGLRYLVIYCTSIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRITDVGI 368
Query: 280 SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339
Y+ + L L+ RGC+ +TD + L +KL+ LD+ P +SD G+ +LA
Sbjct: 369 RYV-AKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLK--SLDIGKCPLVSDTGLESLAL 425
Query: 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK 399
+ L ++ C I + +A+ D +++L++ +C ++ A R++K+
Sbjct: 426 NCFNLKRLSLKSCESITGQGLQIVAANCFD--------LQMLNVQDC-EVSVEALRFVKR 476
|
Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest. Mus musculus (taxid: 10090) |
| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 14/254 (5%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G + TD ++ CS L L ++ T +T++
Sbjct: 104 VGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKA 163
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISS-LPQL 264
+S L + + WC+ +T I++L G+K L L+ C L DEAL+ I + P+L
Sbjct: 164 LSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPEL 223
Query: 265 KILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L I+D G+ + L L GC +TD ++AL +L++ L++
Sbjct: 224 VTLNLQTCLQITDEGLITI-CRGCHKLQSLCASGCSNITDAILNALGQNCPRLRI--LEV 280
Query: 324 SNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 383
+ L+D G TLA + ++ + +C I D+++I L+ + +++L L
Sbjct: 281 ARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLS--------IHCPRLQVLSL 332
Query: 384 YNCGGITQLAFRWL 397
+C IT R L
Sbjct: 333 SHCELITDDGIRHL 346
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| 255577864 | 643 | ubiquitin-protein ligase, putative [Rici | 0.979 | 0.743 | 0.830 | 0.0 | |
| 224080674 | 643 | predicted protein [Populus trichocarpa] | 0.922 | 0.699 | 0.829 | 0.0 | |
| 356575440 | 637 | PREDICTED: F-box/LRR-repeat protein 10-l | 0.981 | 0.751 | 0.779 | 0.0 | |
| 359474824 | 719 | PREDICTED: F-box/LRR-repeat protein 10-l | 0.942 | 0.639 | 0.794 | 0.0 | |
| 224103131 | 644 | f-box family protein [Populus trichocarp | 0.928 | 0.703 | 0.825 | 0.0 | |
| 357444831 | 643 | F-box/LRR-repeat protein [Medicago trunc | 0.989 | 0.751 | 0.772 | 0.0 | |
| 359474995 | 640 | PREDICTED: F-box/LRR-repeat protein 10-l | 0.942 | 0.718 | 0.787 | 0.0 | |
| 449454247 | 637 | PREDICTED: F-box/LRR-repeat protein 10-l | 0.944 | 0.723 | 0.722 | 0.0 | |
| 449508806 | 637 | PREDICTED: LOW QUALITY PROTEIN: F-box/LR | 0.944 | 0.723 | 0.720 | 0.0 | |
| 413956960 | 640 | hypothetical protein ZEAMMB73_141308 [Ze | 0.961 | 0.732 | 0.622 | 1e-166 |
| >gi|255577864|ref|XP_002529805.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223530716|gb|EEF32587.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/479 (83%), Positives = 442/479 (92%), Gaps = 1/479 (0%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+AL LMFD+SLFLRHNF RVWALASEKLTSLEIGYISSVMVTELL+P+V PHQS N IRP
Sbjct: 163 EALTLMFDVSLFLRHNFTRVWALASEKLTSLEIGYISSVMVTELLTPSVGPHQSLNHIRP 222
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
SILPGIQKL LSVDYITD MVGTIS+GL+ LTHLDLRD PLIEPRITFDLTNSGLQQINQ
Sbjct: 223 SILPGIQKLSLSVDYITDTMVGTISKGLMFLTHLDLRDTPLIEPRITFDLTNSGLQQINQ 282
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
+GKL+HLSL RSQEF+ITYFRRVNDLGILLMAD CASMESICLGGFC+VTDTGFKTILHS
Sbjct: 283 YGKLRHLSLFRSQEFVITYFRRVNDLGILLMADNCASMESICLGGFCQVTDTGFKTILHS 342
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
CS+L++LRVS G LTDLVFHD+SATSL L+HVCLRWCNLLTN+AIK+L +NT +KVLDL
Sbjct: 343 CSSLHRLRVSRGIHLTDLVFHDMSATSLCLSHVCLRWCNLLTNYAIKNLVANTHLKVLDL 402
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDCKNLGDE+LRAIS+L +LKILLLDGS ISD G+S LR VI+SLV LS+RGCKRLTDK
Sbjct: 403 RDCKNLGDESLRAISTLFELKILLLDGSGISDSGLSNLRGRVISSLVSLSVRGCKRLTDK 462
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
CISALF+G SKL+LQELD+SNLP+LSDNGIL LA R+PIS LR+RQCPLIGDTSV+ALA
Sbjct: 463 CISALFEGASKLELQELDISNLPNLSDNGILCLAKSRLPISALRMRQCPLIGDTSVMALA 522
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM VD+DR +GSS+RLLD+YNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDI+DALAR
Sbjct: 523 SMQVDEDRGHGSSLRLLDIYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDIIDALAR 582
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEIN 483
+RPFL+VAC EELG+DQWDNSD +YMHDYDEVDELEQWL+EGE E +NDEEM +AEIN
Sbjct: 583 NRPFLHVACHAEELGIDQWDNSDSLYMHDYDEVDELEQWLLEGEFE-NNDEEMVDAEIN 640
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080674|ref|XP_002306206.1| predicted protein [Populus trichocarpa] gi|222849170|gb|EEE86717.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/451 (82%), Positives = 415/451 (92%), Gaps = 1/451 (0%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+ LILMFD+ LFLRH FA+VWALASEKLTSLEIG +SSVMVTELLSP++ H+SPN +RP
Sbjct: 165 EELILMFDVPLFLRHKFAQVWALASEKLTSLEIGCVSSVMVTELLSPSLGHHRSPNHVRP 224
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
ILPGIQKLCLSVDYITD MV TIS L+SLTHLDLRDAPLIEP +DLTNSGLQQINQ
Sbjct: 225 PILPGIQKLCLSVDYITDTMVSTISNVLMSLTHLDLRDAPLIEPSSAYDLTNSGLQQINQ 284
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
HGKLKHLSL+RSQEFLITYFRRVNDLG+LLMADKCA+MESICLGGFCRVTDTGFKTILHS
Sbjct: 285 HGKLKHLSLVRSQEFLITYFRRVNDLGMLLMADKCANMESICLGGFCRVTDTGFKTILHS 344
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
CS+LYKLRVS+GT LTDLVFHDISATSLSLTHV LRWCNLLTNHAIK+L SNT +K+LDL
Sbjct: 345 CSSLYKLRVSYGTHLTDLVFHDISATSLSLTHVSLRWCNLLTNHAIKNLVSNTCLKILDL 404
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDCK+LGD ALR+IS+LP+LKILLLDGSDISD G+SYLR VI SLV LS+RGCKRLTDK
Sbjct: 405 RDCKHLGDGALRSISTLPELKILLLDGSDISDFGLSYLR-GVINSLVSLSVRGCKRLTDK 463
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
CISALF+G+SKL+LQ+LDLSNLP+LSDNG+LTLA CRVPISELR+RQCPLIGD SV+ALA
Sbjct: 464 CISALFEGSSKLELQQLDLSNLPNLSDNGVLTLAKCRVPISELRMRQCPLIGDASVMALA 523
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM VD+DRW+G +RLLDLYNCGGITQL+F WLKKPYFPRLRWLGVTGSV+RDI+DALAR
Sbjct: 524 SMQVDEDRWHGCRLRLLDLYNCGGITQLSFWWLKKPYFPRLRWLGVTGSVSRDIVDALAR 583
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYD 455
+RPFL VAC EELG +QWDNS G+YMHDYD
Sbjct: 584 NRPFLRVACHAEELGSNQWDNSHGLYMHDYD 614
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575440|ref|XP_003555849.1| PREDICTED: F-box/LRR-repeat protein 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/481 (77%), Positives = 429/481 (89%), Gaps = 2/481 (0%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+ALILMFD+SLFLRHNFARVWA ASEKLTSLEIGYISSV VTELLSPN+ N +P
Sbjct: 156 EALILMFDVSLFLRHNFARVWASASEKLTSLEIGYISSVTVTELLSPNLGSQLPSNPAQP 215
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
SILP IQKLCL+VDYITDAMVGTIS+GL+ LTHLDL+DAPLIEPRITFDLTN+GLQQINQ
Sbjct: 216 SILPSIQKLCLNVDYITDAMVGTISKGLMLLTHLDLQDAPLIEPRITFDLTNAGLQQINQ 275
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
G+LKHLSL+RSQEF ITYFRRVNDLG+LLMADKCA+MESICLGGFCRVTDTGFKTILHS
Sbjct: 276 LGRLKHLSLVRSQEFQITYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGFKTILHS 335
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
C+ LYKL+V+HGT LTDLVFHDISATSL+LTHV LR CNLLTNHA+ SLASN +K+LDL
Sbjct: 336 CTRLYKLKVTHGTHLTDLVFHDISATSLTLTHVSLRRCNLLTNHAVLSLASNKVLKILDL 395
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDC++LGDEAL+AI +LP+LKILLLDGSDI+D G+ YLR +VI+SL LSLRGCKRLTDK
Sbjct: 396 RDCRSLGDEALQAIGTLPRLKILLLDGSDITDAGLLYLRPSVISSLYALSLRGCKRLTDK 455
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
CI+ALF+G L+L+ELDLSNLP+LSDNG+L LA R+P ELR+RQCPLIGDTSV+ALA
Sbjct: 456 CITALFNGCCVLELRELDLSNLPNLSDNGVLLLAKSRIPFFELRMRQCPLIGDTSVMALA 515
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SMLVD+ + +GSS+RLLDL+NCGGIT LAFRWLKKPYFPRL+WLGVTGSVNRD++DALAR
Sbjct: 516 SMLVDEAK-HGSSLRLLDLFNCGGITPLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALAR 574
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINA 484
SRPFL+VAC GEELG D + SDG+Y HDYD+VDE EQWL+E + +SD EEM +AE N
Sbjct: 575 SRPFLHVACHGEELGADPYGTSDGLYTHDYDDVDEFEQWLLEADIDSDY-EEMGDAENND 633
Query: 485 E 485
E
Sbjct: 634 E 634
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474824|ref|XP_003631537.1| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/463 (79%), Positives = 415/463 (89%), Gaps = 3/463 (0%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
K L LMFDISLF R+NFAR W+LASE LTSLEIGY+SSVMVTELLSPNV PHQ PN ++P
Sbjct: 158 KTLSLMFDISLFPRYNFARAWSLASENLTSLEIGYVSSVMVTELLSPNVGPHQPPNHLQP 217
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
SILP +Q+LCLSVDYITD MV T+S+ L++LTHLDLRDAP+IEPR+TFDLTNSG QQINQ
Sbjct: 218 SILPSLQRLCLSVDYITDTMVETVSKCLINLTHLDLRDAPIIEPRVTFDLTNSGFQQINQ 277
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
GKLKHLSL+RSQEFLITYF+RVNDLGILLMAD+C+SMESICLGGFCRVTD+GFKTILHS
Sbjct: 278 RGKLKHLSLVRSQEFLITYFKRVNDLGILLMADRCSSMESICLGGFCRVTDSGFKTILHS 337
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
CS LYKLRVSHG LT+LVF DISATSLSLTHV LRWCNLL N A+ SLASN ++VLDL
Sbjct: 338 CSTLYKLRVSHGMLLTNLVFLDISATSLSLTHVSLRWCNLLRNQAVISLASNLDLRVLDL 397
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDC+NLGDEAL+AIS+L +LKILLLDGSDI+D G+SYLR VI SLV LS+RGCKRLTDK
Sbjct: 398 RDCRNLGDEALQAISTLHKLKILLLDGSDITDAGLSYLREGVIGSLVSLSIRGCKRLTDK 457
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
CISALFD +SK +LQELDLSNLP+LSDNGI +LA RVPI ELR+RQCPLIGDTS++ALA
Sbjct: 458 CISALFDPSSKQELQELDLSNLPNLSDNGIFSLAKSRVPILELRMRQCPLIGDTSIMALA 517
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM VDD R +GSS+R+LDLYNCGGIT L+FRWLK PYFPRLRWLGVTGSVNRD++DALAR
Sbjct: 518 SMQVDDHRSHGSSLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTGSVNRDMVDALAR 577
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEG 467
SRPFL+VAC GEELG D W DG+YMHD +E+DELEQWL+EG
Sbjct: 578 SRPFLHVACHGEELGTDHW---DGLYMHDNEEMDELEQWLLEG 617
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103131|ref|XP_002312937.1| f-box family protein [Populus trichocarpa] gi|222849345|gb|EEE86892.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/454 (82%), Positives = 417/454 (91%), Gaps = 1/454 (0%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+ALILMFD+SLFLRHNFA VWAL SEKLTSLEIGY+SSVMVTEL+ P++ PHQSPN +RP
Sbjct: 159 EALILMFDVSLFLRHNFALVWALVSEKLTSLEIGYVSSVMVTELVGPSLGPHQSPNHVRP 218
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
SILPGIQKLCLSVDYITD MV TIS+GL+SLTHLDLRDAPLIEP ITFDLTNSGLQQINQ
Sbjct: 219 SILPGIQKLCLSVDYITDTMVSTISKGLMSLTHLDLRDAPLIEPTITFDLTNSGLQQINQ 278
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
HGKLKHLSL+RSQEF ITYFRRVNDLG+LLMADKC +MESICLGGFCRVTDTGFKTILHS
Sbjct: 279 HGKLKHLSLVRSQEFAITYFRRVNDLGMLLMADKCENMESICLGGFCRVTDTGFKTILHS 338
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
CS+LYKL+VS+G LTDLVFHDISATSLSL HV LRWCNLLTNHAIK+L NT ++VLDL
Sbjct: 339 CSSLYKLQVSYGIHLTDLVFHDISATSLSLIHVSLRWCNLLTNHAIKNLVLNTRLRVLDL 398
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDCK+ GDEALRAIS+L +LKILLLDGS+ISD G+SYLR +I SLV LS+RGCKRLTDK
Sbjct: 399 RDCKHFGDEALRAISALLELKILLLDGSNISDFGLSYLR-GIINSLVSLSVRGCKRLTDK 457
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
CISALF+G+SKL+LQ+LDLSNLP+LSDNG+L LA CRVPISELR+RQCPLIGDTSV+ALA
Sbjct: 458 CISALFEGSSKLKLQQLDLSNLPNLSDNGVLALAKCRVPISELRMRQCPLIGDTSVMALA 517
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM VD+DR +G S+RLLDLYNCGGITQL+FRWLKKPYFPRLR LGVTGS +RDI+DALAR
Sbjct: 518 SMRVDEDRLHGCSLRLLDLYNCGGITQLSFRWLKKPYFPRLRCLGVTGSASRDIIDALAR 577
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVD 458
SRPFL+VAC EELG +QWDN G+YMHD DEVD
Sbjct: 578 SRPFLHVACHAEELGSNQWDNLHGLYMHDNDEVD 611
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444831|ref|XP_003592693.1| F-box/LRR-repeat protein [Medicago truncatula] gi|358345302|ref|XP_003636720.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355481741|gb|AES62944.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355502655|gb|AES83858.1| F-box/LRR-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/487 (77%), Positives = 424/487 (87%), Gaps = 4/487 (0%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+ LILMFD+SLFLRHN ARVWA ASEKLTSLEIGYISSV V EL S N+ HQ N I+P
Sbjct: 156 EVLILMFDVSLFLRHNLARVWASASEKLTSLEIGYISSVTVIELFSSNLGSHQPLNPIQP 215
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
SILPGIQKLCLSV+YITDAMV TIS+GLV LTHLDLRDAP +EPRITFDLTN+GLQQINQ
Sbjct: 216 SILPGIQKLCLSVNYITDAMVNTISKGLVFLTHLDLRDAPFVEPRITFDLTNAGLQQINQ 275
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
HG+LKHLSLIRSQEF+I YFRRVNDLG+LLMADKCA+MESICLGGFCRVTDTG KTILHS
Sbjct: 276 HGRLKHLSLIRSQEFIICYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGIKTILHS 335
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
CS LYKL+V+HGTQLTDLVFHDISATSL+LTHV LRWC LLTNH++ SL SN +KVLDL
Sbjct: 336 CSRLYKLKVTHGTQLTDLVFHDISATSLTLTHVSLRWCKLLTNHSVFSLTSNKELKVLDL 395
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDC++LGDEALRAI L +LKILL+DGSDI+D G+SYLR TVI SL LSLRGCKRLTDK
Sbjct: 396 RDCRSLGDEALRAIGILLRLKILLIDGSDITDAGLSYLRSTVINSLYALSLRGCKRLTDK 455
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
CI+ LFDG KL+L++LDLSNLP+LSDNG+L LA R+P +LR+RQCPLIGDTS++ALA
Sbjct: 456 CITVLFDGCGKLELRDLDLSNLPNLSDNGVLELAKSRIPFLDLRMRQCPLIGDTSIMALA 515
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM+ DD WY S +RLLD+YNCGGIT LAFRWLKKPYFPRL+WLGVTGSVNRD++DALAR
Sbjct: 516 SMMTDDAGWYESGLRLLDMYNCGGITPLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALAR 575
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGE-DESD---NDEEMANA 480
SRPFL VAC GEELG D D SDG+Y HDYDEVDE EQWL+E + DE+D +DEEM +A
Sbjct: 576 SRPFLYVACNGEELGPDPCDMSDGLYTHDYDEVDEFEQWLLEADIDEADIENDDEEMVDA 635
Query: 481 EINAEPM 487
E EP+
Sbjct: 636 ENEEEPI 642
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474995|ref|XP_003631565.1| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/466 (78%), Positives = 415/466 (89%), Gaps = 6/466 (1%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEI---GYISSVMVTELLSPNVEPHQSPNQ 61
K L LMFDISLF R+NFAR W+LAS+ LTSLEI GY+SSVMVTELLSPNV PHQ PN
Sbjct: 158 KTLSLMFDISLFPRYNFARAWSLASKNLTSLEIAYIGYVSSVMVTELLSPNVGPHQPPNH 217
Query: 62 IRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ 121
+RPSILP +Q+LCLSVDYITD MV T+S+ L++LTHLDLRDAP+IEPR+TFDLTNSG QQ
Sbjct: 218 LRPSILPSLQRLCLSVDYITDTMVETVSKCLINLTHLDLRDAPIIEPRVTFDLTNSGFQQ 277
Query: 122 INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI 181
INQ GKLKHLSL+RSQEFLITYF+RVNDLGILLMAD+C+SMESICLGGFCRVTD+GFKTI
Sbjct: 278 INQRGKLKHLSLVRSQEFLITYFKRVNDLGILLMADRCSSMESICLGGFCRVTDSGFKTI 337
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 241
LHSCS LYKLRVSHG LT+LVF DISATSLSLTHV LRWCNLL N A+ SLASN ++V
Sbjct: 338 LHSCSTLYKLRVSHGMLLTNLVFLDISATSLSLTHVSLRWCNLLRNQAVISLASNLDLRV 397
Query: 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301
LDLRDC+NLGDEAL+AIS+L +LKILLLDGSDI+D G+SYLR VI SLV LS+RGCKRL
Sbjct: 398 LDLRDCRNLGDEALQAISTLHKLKILLLDGSDITDAGLSYLREGVIGSLVSLSIRGCKRL 457
Query: 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 361
TDKCISALFD +SK +LQELDLSNLP+LSDNGI +LA RVPI ELR+RQCPLIGD+S++
Sbjct: 458 TDKCISALFDPSSKQELQELDLSNLPNLSDNGIFSLAKSRVPILELRMRQCPLIGDSSIM 517
Query: 362 ALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDA 421
ALASM VDD R +GSS+R+LDLYNCGGIT L+FRWLK PYFPRLRWLGVTGSVNRD++DA
Sbjct: 518 ALASMQVDDHRSHGSSLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTGSVNRDMVDA 577
Query: 422 LARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEG 467
LARSRPFL+VAC GEELG D W DG+YMHD +E+DELEQWL+EG
Sbjct: 578 LARSRPFLHVACHGEELGTDHW---DGLYMHDNEEMDELEQWLLEG 620
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454247|ref|XP_004144867.1| PREDICTED: F-box/LRR-repeat protein 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/461 (72%), Positives = 392/461 (85%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+AL LMFD+S FLR NFARVWA+ASEKLTSLEIG I SV VTELLS N+ S N+I P
Sbjct: 158 EALTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTVTELLSQNLGVGNSMNRIVP 217
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
S+ P I+KLCLSVDYITDAMVG IS+GL+SLTHL+L+DAP+IEPR +FDLTN GLQQINQ
Sbjct: 218 SMWPNIEKLCLSVDYITDAMVGAISKGLISLTHLELQDAPIIEPRFSFDLTNVGLQQINQ 277
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
KL+HLSL+RSQEFL++YFRRVNDLGILLM D CA +ESICLGGFCRVTDTGF+TILH+
Sbjct: 278 LSKLRHLSLVRSQEFLVSYFRRVNDLGILLMVDGCADLESICLGGFCRVTDTGFRTILHT 337
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
SNL KLRV HG QLT LVFHDISATSLSL HV LRWC+LLTN A+K+L+ N + LDL
Sbjct: 338 FSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVKNLSLNKDLSYLDL 397
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDC++L DEALRAI ++P+LK LLLDGSDISD G+S+LR +++SLV LS+R CK+LTDK
Sbjct: 398 RDCRSLRDEALRAIGTIPKLKTLLLDGSDISDAGLSHLRPLIMSSLVSLSVRCCKKLTDK 457
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
I+ LFDG SK++L LDLSNLP+LSD IL L + ISELR+RQCPLIGD SV+ALA
Sbjct: 458 SITVLFDGLSKIELHVLDLSNLPYLSDAAILQLTRSKFAISELRLRQCPLIGDVSVMALA 517
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM V++D+ +GSS+RLLDLYNCGG+TQL+F+WLK PYFPR+RWLGVTGS++RD++DALAR
Sbjct: 518 SMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRMRWLGVTGSLHRDLVDALAR 577
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLM 465
SRPFL+VAC GEELG D WD+SD YMH YDEVDE EQWL
Sbjct: 578 SRPFLHVACHGEELGADHWDSSDSFYMHHYDEVDEFEQWLF 618
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449508806|ref|XP_004163416.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/461 (72%), Positives = 391/461 (84%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+AL LMFD+S FLR NFARVWA+ASEKLTSLEIG I SV VTELLS N+ S N+I P
Sbjct: 158 EALTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTVTELLSQNLGVGNSMNRIVP 217
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 124
S+ P I+KLCLSVDYITDAMVG IS+GL+SLTHL+L+DAP+IEPR +FDLTN GLQQINQ
Sbjct: 218 SMWPNIEKLCLSVDYITDAMVGAISKGLISLTHLELQDAPIIEPRFSFDLTNVGLQQINQ 277
Query: 125 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
KL+HLSL+RSQEFL++YFRRVNDLGILLM D CA +ESICLGGFCRVTDTGF+TILH+
Sbjct: 278 LSKLRHLSLVRSQEFLVSYFRRVNDLGILLMVDGCADLESICLGGFCRVTDTGFRTILHT 337
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
SNL KLRV HG QLT LVFHDISATSLSL HV LRWC+LLTN A+ +L+ N + LDL
Sbjct: 338 FSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVXNLSLNKDLSYLDL 397
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
RDC++L DEALRAI ++P+LK LLLDGSDISD G+S+LR +++SLV LS+R CK+LTDK
Sbjct: 398 RDCRSLRDEALRAIGTIPKLKTLLLDGSDISDAGLSHLRPLIMSSLVSLSVRCCKKLTDK 457
Query: 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
I+ LFDG SK++L LDLSNLP+LSD IL L + ISELR+RQCPLIGD SV+ALA
Sbjct: 458 SITVLFDGLSKIELHVLDLSNLPYLSDAAILQLTRSKFAISELRLRQCPLIGDVSVMALA 517
Query: 365 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALAR 424
SM V++D+ +GSS+RLLDLYNCGG+TQL+F+WLK PYFPR+RWLGVTGS++RD++DALAR
Sbjct: 518 SMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRMRWLGVTGSLHRDLVDALAR 577
Query: 425 SRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLM 465
SRPFL+VAC GEELG D WD+SD YMH YDEVDE EQWL
Sbjct: 578 SRPFLHVACHGEELGADHWDSSDSFYMHHYDEVDEFEQWLF 618
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413956960|gb|AFW89609.1| hypothetical protein ZEAMMB73_141308 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/472 (62%), Positives = 365/472 (77%), Gaps = 3/472 (0%)
Query: 7 LILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIR-PS 65
L L D S F NF RVWA ASE+L+SLEIGYI M+ ELL E Q + ++ P
Sbjct: 169 LRLALDFSTFDDPNFGRVWASASERLSSLEIGYIPMTMLLELLVAVTEGQQCMDYVKTPV 228
Query: 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQH 125
P +QKLCL+VD+ITD ++G+IS L SLTHLDL+DAP++EP + DLTN+GLQQIN H
Sbjct: 229 FFPSLQKLCLAVDFITDHLIGSISVALPSLTHLDLQDAPIVEPNSSSDLTNAGLQQINPH 288
Query: 126 GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSC 185
GKLKH+SL+RSQEFL+T FRRVNDLGILLMAD+C+++ES+CLGGF RVTDTGF+ I+HSC
Sbjct: 289 GKLKHISLMRSQEFLVTSFRRVNDLGILLMADRCSNLESVCLGGFSRVTDTGFRAIIHSC 348
Query: 186 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLR 245
S L+KLRVSHG+ LTDLVFHDI ATSL LTHV LRWC LLTN I+ L+ N + VLDLR
Sbjct: 349 SGLHKLRVSHGSHLTDLVFHDIIATSLCLTHVSLRWCKLLTNVGIERLSCNKDLNVLDLR 408
Query: 246 DCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305
DC++LGDEA+RA+S LP+L+ L LD +DISD + YL L L LSLRGC++LT+ C
Sbjct: 409 DCRSLGDEAVRALSCLPKLQTLTLDATDISDQSLKYLGLGT-CPLTSLSLRGCRKLTNDC 467
Query: 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALAS 365
I+ LF G K LQ LDLS +P ++D+GI+ LA R P+ ELR+R+ P IGD SV+ALAS
Sbjct: 468 ITLLFAGHVKQSLQMLDLSRIPSITDDGIMLLARSRTPLIELRMRENPKIGDASVMALAS 527
Query: 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARS 425
M +D YGS+++LLDL++CGGIT LA RW KKPYFPRLRWLG+TGS+NR ++DAL+RS
Sbjct: 528 MQIDGGT-YGSTLQLLDLFDCGGITPLAARWFKKPYFPRLRWLGITGSLNRVMVDALSRS 586
Query: 426 RPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEM 477
RPFL++ACRGEELG WD S Y H+ D++DELEQWL+EGE SD+D M
Sbjct: 587 RPFLHMACRGEELGTMLWDTSSDWYRHNDDDLDELEQWLLEGEPVSDDDTIM 638
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| TAIR|locus:2827644 | 656 | AT2G17020 "AT2G17020" [Arabido | 0.975 | 0.725 | 0.603 | 7.9e-149 | |
| TAIR|locus:2020477 | 607 | AT1G55590 [Arabidopsis thalian | 0.795 | 0.639 | 0.378 | 4.8e-62 | |
| RGD|1562243 | 422 | Fbxl2 "F-box and leucine-rich | 0.438 | 0.507 | 0.315 | 6.3e-17 | |
| MGI|MGI:1919429 | 423 | Fbxl2 "F-box and leucine-rich | 0.438 | 0.505 | 0.310 | 8.3e-17 | |
| UNIPROTKB|Q9UKC9 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.438 | 0.505 | 0.315 | 8.3e-17 | |
| UNIPROTKB|Q5R3Z8 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.438 | 0.505 | 0.315 | 8.3e-17 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.438 | 0.507 | 0.310 | 1.4e-16 | |
| UNIPROTKB|F1NHD2 | 423 | FBXL2 "Uncharacterized protein | 0.438 | 0.505 | 0.301 | 1.4e-16 | |
| ASPGD|ASPL0000017608 | 585 | grrA [Emericella nidulans (tax | 0.778 | 0.649 | 0.246 | 2.1e-15 | |
| UNIPROTKB|A6H779 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.438 | 0.505 | 0.297 | 7.2e-15 |
| TAIR|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
Identities = 294/487 (60%), Positives = 374/487 (76%)
Query: 5 KALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRP 64
+ L LMFD+SL+LR R++ L S++LT LE+G+I+S M+T+LL+ Q N++
Sbjct: 170 EVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRVTT 229
Query: 65 S-ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN 123
S +L +Q+L LSVD ITDA+V IS+ L SL LD+RDAPL +PR DLT+ GL +IN
Sbjct: 230 STVLQNVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEIN 289
Query: 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 183
Q+GKLKHLSLIRSQEF TYFRRV+D G+L +ADKC ME+ICLGGFCRVTD GFKTILH
Sbjct: 290 QNGKLKHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILH 349
Query: 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLD 243
SC++L K + HG +LTDLVFHDI AT+LSL+HV LR C+LLT+HAI+ LAS+ ++ LD
Sbjct: 350 SCASLSKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLD 409
Query: 244 LRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 303
LR C+NL DE L A+S LP+LK+LLLDG+DISD G+SYL+ V+ SLV LS+RGC+ LTD
Sbjct: 410 LRGCRNLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTD 469
Query: 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 363
K +S LFDG+SKL L+ELDLSNLP+L+D I LA PI++L++R+C LIGD SV+AL
Sbjct: 470 KFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMAL 529
Query: 364 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALA 423
AS V +D GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+DALA
Sbjct: 530 ASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALA 589
Query: 424 RSRPFLNVACRGEELG---VDQWDNSDGMYMHDYDEVDELEQWLM--EG----EDESDND 474
R RP L V+CRGEELG D WD++D ++ H + DELEQW++ EG ED D
Sbjct: 590 RRRPHLQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGDVEMEDAEDES 648
Query: 475 EEMANAE 481
EE A+ E
Sbjct: 649 EEDASEE 655
|
|
| TAIR|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 151/399 (37%), Positives = 229/399 (57%)
Query: 54 EPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD 113
+P + + PS +Q L L +D I+D ++ I+ L L LDL D P EP D
Sbjct: 205 QPDYNSALLSPSPSFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDND 264
Query: 114 LTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRV 173
LT +GLQ + +L LSL+R+ F+R+ND+GI L+++ C +ES+ LGGF +V
Sbjct: 265 LTYTGLQALGFCQQLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKV 324
Query: 174 TDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL 233
+D GF ++LHSC NL K V L+DL FHD++ +S SL V L C L+T+ A+K L
Sbjct: 325 SDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKL 384
Query: 234 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKL 293
++VLDL CK++ D L ++S+L +L L L G+D++D G+ L + + + +L
Sbjct: 385 GLCGNLEVLDLGSCKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDVP-ITQL 443
Query: 294 SLRGCKRLTDKCISALF--DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQ 351
SLRGC+R++D+ IS L +GT L LDL ++P +SD I T+ C ++EL +R
Sbjct: 444 SLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRS 503
Query: 352 CPLIGDTSVIALASMLVDDDRWYGSS-IRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGV 410
C + D+S+ +LA+ + GS +R L+++NC +T A RWL KP F L WLG+
Sbjct: 504 CFHVTDSSIESLATW--ERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGM 561
Query: 411 --TGSVNRD--ILDALARSRPFLNVACRGEELGV-DQWD 444
T R + + RP+L + G ELG D W+
Sbjct: 562 GQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDGWE 600
|
|
| RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 70/222 (31%), Positives = 112/222 (50%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 90 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKG 149
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISS-LPQL 264
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I + +L
Sbjct: 150 ISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHEL 209
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 210 VSLNLQSCSRITDDGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQVLEA 266
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA C + ++ + +C LI D+++I L+
Sbjct: 267 ARCSHLTDAGFTLLARNCH-DLEKMDLEECVLITDSTLIQLS 307
|
|
| MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 69/222 (31%), Positives = 112/222 (50%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISS-LPQL 264
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I + +L
Sbjct: 151 ISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHEL 210
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 211 VSLNLQSCSRITDDGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQVLEA 267
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA C + ++ + +C LI D++++ L+
Sbjct: 268 ARCSHLTDAGFTLLARNCH-ELEKMDLEECVLITDSTLVQLS 308
|
|
| UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 70/222 (31%), Positives = 112/222 (50%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSL-PQL 264
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I + +L
Sbjct: 151 ISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHEL 210
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 211 VSLNLQSCSRITDEGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQILEA 267
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA C + ++ + +C LI D+++I L+
Sbjct: 268 ARCSHLTDAGFTLLARNCH-ELEKMDLEECILITDSTLIQLS 308
|
|
| UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 70/222 (31%), Positives = 112/222 (50%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSL-PQL 264
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I + +L
Sbjct: 151 ISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHEL 210
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L S I+D GV + L L L GC LTD ++AL G + +LQ L+
Sbjct: 211 VSLNLQSCSRITDEGVVQI-CRGCHRLQALCLSGCSNLTDASLTAL--GLNCPRLQILEA 267
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA C + ++ + +C LI D+++I L+
Sbjct: 268 ARCSHLTDAGFTLLARNCH-ELEKMDLEECILITDSTLIQLS 308
|
|
| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 69/222 (31%), Positives = 111/222 (50%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 90 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 149
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSL-PQL 264
IS +L ++ L WC+ +T I++L G+K L LR C L DEAL+ I + +L
Sbjct: 150 ISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHEL 209
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L S I+D GV + L L L GC LTD ++AL +LQ+ L+
Sbjct: 210 VSLNLQSCSRITDEGVVQI-CRGCHRLQALCLSGCSNLTDASLTALALNCPRLQI--LEA 266
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA C + ++ + +C LI D+++I L+
Sbjct: 267 ARCSHLTDAGFTLLARNCH-DLEKMDLEECILITDSTLIQLS 307
|
|
| UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 67/222 (30%), Positives = 113/222 (50%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVAITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDLRDCKNLGDEALRAISS-LPQL 264
+S +L H+ L WC+ +T I++L +G+K L LR C L DEAL+ I + +L
Sbjct: 151 LSEGCRNLEHLNLSWCDQITKDGIEALVKGCSGLKALFLRGCTQLEDEALKHIQNHCHEL 210
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
IL L + ISD G+ + L L + GC LTD ++AL G + +L+ L+
Sbjct: 211 AILNLQSCTQISDEGIVKI-CRGCHRLQSLCVSGCCNLTDASLTAL--GLNCPRLKILEA 267
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ L+D G LA C + ++ + +C LI D+++I L+
Sbjct: 268 ARCSQLTDAGFTLLARNCH-ELEKMDLEECVLITDSTLIQLS 308
|
|
| ASPGD|ASPL0000017608 grrA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 100/405 (24%), Positives = 179/405 (44%)
Query: 95 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHL-SLIRSQEFLITYFRRVNDLGIL 153
LT + + D ++ R L S L+ + H K + R Q IT +V D ++
Sbjct: 175 LTDIGVSDL-VVGSRHLQALDVSELRSLTDHTLFKVAENCNRLQGLNITGCVKVTDDSLI 233
Query: 154 LMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLS 213
++ C ++ + L G +VTD + +C ++ ++ + +T+ + T +
Sbjct: 234 AVSQNCRLLKRLKLNGVSQVTDKAILSFAQNCPSILEIDLQECKLVTNQSVTALMTTLQN 293
Query: 214 LTHVCLRWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLL 269
L + L C + + A L + T +++LDL C+N+ DEA+ R +SS P+L+ L+L
Sbjct: 294 LRELRLAHCTEIDDSAFLDLPRHIQMTSLRILDLTACENIRDEAVERIVSSAPRLRNLVL 353
Query: 270 DGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPH 328
I+D V + + +L + L C + D + L ++++ +DL+
Sbjct: 354 AKCKFITDRAV-WAICKLGKNLHYVHLGHCSNINDSAVIQLVKSCNRIRY--IDLACCSR 410
Query: 329 LSDNGILTLATCRVP-ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387
L+D + LAT +P + + + +C LI D S++ALA D SS+ + L C
Sbjct: 411 LTDRSVQQLAT--LPKLRRIGLVKCQLITDASILALARP-AQDHSVPCSSLERVHLSYCV 467
Query: 388 GITQLAFRWLKKPYFPRLRWLGVTG--SVNRDILDALARSRP--FLN----VACRGEELG 439
+T + L PRL L +TG + R+ L R P F V C G
Sbjct: 468 NLTMVGIHALLNSC-PRLTHLSLTGVAAFLREELTVFCREAPPEFTRQQREVFCVFSGEG 526
Query: 440 VDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINA 484
V++ N + + D E + + E+E D DE ++A
Sbjct: 527 VNRLRNH--LNREAAPQRDANEATMYDDEEELDEDEGQVTGLMHA 569
|
|
| UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 66/222 (29%), Positives = 108/222 (48%)
Query: 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD 206
V D + A C ++E + L G ++TD+ ++ CS L L ++ +T+
Sbjct: 91 VGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKG 150
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSL-PQL 264
IS L ++ L WC+ +T +++L G++ L LR C L DEAL+ I + +L
Sbjct: 151 ISEGCRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHEL 210
Query: 265 KILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 323
L L S ++D GV L L L L GC LTD ++AL +LQ+ L+
Sbjct: 211 VSLNLQSCSRVTDDGVVQL-CRGCPRLQALCLSGCGSLTDASLTALALNCPRLQI--LEA 267
Query: 324 SNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALA 364
+ HL+D G LA C + ++ + +C LI D ++ L+
Sbjct: 268 ARCSHLTDAGFTLLARNCH-DLEKMDLEECILITDRTLTQLS 308
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SDA8 | FBL10_ARATH | No assigned EC number | 0.6085 | 0.9528 | 0.7088 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 488 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 8e-11 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 4e-06 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-04 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 0.001 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.001 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 8e-11
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 213 SLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDL---RDCKNLGDEALRAISSL-PQLKIL 267
+L + LR C +T+ I +LA+N ++ ++L R+ + D +L A+ L+ +
Sbjct: 79 NLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTV 138
Query: 268 LLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 327
G D++D GV L SL +LSL C+ LTD+ I A+ L L+ P
Sbjct: 139 GFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCP 198
Query: 328 HLSD 331
++D
Sbjct: 199 LITD 202
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 53/169 (31%), Positives = 70/169 (41%), Gaps = 26/169 (15%)
Query: 262 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQEL 321
L+ L L ISD + L + L KL L G K + D+ + AL S LQ L
Sbjct: 28 SGLEWLELYMCPISDPPLDQL--SNCNKLKKLILPGSKLIDDEGLIAL--AQSCPNLQVL 83
Query: 322 DLSNLPHLSDNGILTLAT-CR--VPISELRVRQCPLIGDTSVIALA---SML-------- 367
DL +++D+GI+ LAT C I+ R R LI D S+ AL + L
Sbjct: 84 DLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143
Query: 368 -VDDD------RWYGSSIRLLDLYNCGGITQLAF-RWLKKPYFPRLRWL 408
V D S+ L L NC +T + L YFP L L
Sbjct: 144 DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVL 192
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 60 NQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL 119
N+++ ILPG + I D + ++Q +L LDLR I T+SG+
Sbjct: 52 NKLKKLILPGSKL-------IDDEGLIALAQSCPNLQVLDLRACENI--------TDSGI 96
Query: 120 QQINQH-GKLKHLSLIRSQE-FLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTG 177
+ + KL+ ++L R + LIT D+ + + C ++++ G C VTD G
Sbjct: 97 VALATNCPKLQTINLGRHRNGHLIT------DVSLSALGKNCTFLQTVGFAG-CDVTDKG 149
Query: 178 FKTILHSCS-NLYKLRVSHGTQLTD----LVFHDISATSLSLTHVCLRWCNLLTNH 228
+ CS +L +L +++ LTD + +LS+ + R C L+T+
Sbjct: 150 VWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV--LEFRGCPLITDF 203
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 52/218 (23%)
Query: 95 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILL 154
L L+L P+ +P Q N + KLK L L S+ ++D G++
Sbjct: 30 LEWLELYMCPISDP--------PLDQLSNCN-KLKKLILPGSKL--------IDDEGLIA 72
Query: 155 MADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKL---RVSHGTQLTDLVFHDISATS 211
+A C +++ + L +TD+G + +C L + R +G +TD+ +
Sbjct: 73 LAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNC 132
Query: 212 LSLTHVCLRWCNLLTNHAIKSLASNTG--IKVLDLRDCKNLGDEALRAI---SSLPQLKI 266
L V C++ T+ + LAS ++ L L +C+NL D+++ AI + P L +
Sbjct: 133 TFLQTVGFAGCDV-TDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191
Query: 267 LLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
L RGC +TD
Sbjct: 192 LEF--------------------------RGCPLITDF 203
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 231 KSLASNTGIKVLDLRDCK--NLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLR---L 284
+ L +N ++VLDL + + G AL ++SL L++L L ++++D G + L L
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246
Query: 285 TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS 324
+ SL+ LSL D K L ELDL
Sbjct: 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.96 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.84 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.82 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.74 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.73 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.67 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.66 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.64 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.6 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.53 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.52 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.52 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.44 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.43 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.36 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.16 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.08 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.07 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.89 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.84 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.81 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.81 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.63 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.47 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.46 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.41 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.4 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.38 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.36 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.33 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.18 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.12 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.94 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.85 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.53 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.49 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.46 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.45 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 97.4 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.17 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.03 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.94 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.92 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.81 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.75 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.47 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.47 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.24 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.18 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.98 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.69 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.61 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.52 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.36 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.22 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 94.26 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 93.74 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 93.71 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 93.4 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 93.04 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 91.56 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 91.54 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 88.65 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 86.15 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 85.67 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 84.25 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 82.45 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 81.43 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 80.03 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=225.81 Aligned_cols=378 Identities=21% Similarity=0.273 Sum_probs=295.5
Q ss_pred HhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEee--cCccChhHHHHHHhcC-CCccEEeccCC
Q 011317 27 LASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLS--VDYITDAMVGTISQGL-VSLTHLDLRDA 103 (488)
Q Consensus 27 ~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~~~-~~L~~L~L~~~ 103 (488)
.+|+++....++++..|.+.+-..++.. |+-...- ..+-++.++. ...+...++..+.+.+ ..|+.|.++||
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~----~n~~AlD-~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~ 148 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTM----WNKLALD-GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGC 148 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhhhhhc-cccceeeehhcchhcCCCcceehHhhhhcccccccccccc
Confidence 4677888888888877766555443321 1110000 2233444444 1334445566666655 46889999988
Q ss_pred CCCCCccccccChHHHHhhh-cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHH
Q 011317 104 PLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTIL 182 (488)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 182 (488)
. .+.+..+..+. .||++++|.+. ++..+++..+..+...|++|++|++..|..+++..++.+.
T Consensus 149 r--------~v~~sslrt~~~~CpnIehL~l~--------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 149 R--------AVGDSSLRTFASNCPNIEHLALY--------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred c--------cCCcchhhHHhhhCCchhhhhhh--------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 4 45555666554 78999999884 4668888888888899999999999999899988888888
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-C
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-S 260 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~ 260 (488)
+.|++|++|++++|+.+...++..+.+.+..++.+...+|...+...+.... .++-+..+++..|..+++..+..+. .
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 8999999999999988888888888888888888888888887777666554 5677778888888888888866665 6
Q ss_pred CCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 261 LPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 261 ~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+..|+.|..++| .+++..+..+.+ ++++|+.|.+.+|..+++.++..+.++| +.|+.+++.+|-.+++..+..++.
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hhhhhhcccccceehhhhHhhhcc
Confidence 788999999887 788888888888 8899999999999999999999998888 899999999988888888888888
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC--CHH
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NRD 417 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~--~~~ 417 (488)
+|+.|+.|.+++|..++|.|+..+..... ....|+.+.+++|+.+++..+.++.. |++|+.+++.+|. ...
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTKE 442 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhhhhhh
Confidence 99999999999998899998888765332 56789999999999999999988876 9999999999885 577
Q ss_pred HHHHHHhhCCCceeeccc
Q 011317 418 ILDALARSRPFLNVACRG 435 (488)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~ 435 (488)
.+..+....|.+++--..
T Consensus 443 ~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 443 AISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhHHHHhhCccceehhhc
Confidence 888888999988775443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=218.65 Aligned_cols=318 Identities=24% Similarity=0.386 Sum_probs=287.1
Q ss_pred CCCCcEEEeec-CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhh-cCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..-|+.|.+++ ..+++..+..+...||++++|.+.+|. .+++..+..++ .|++|++|++. .|
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--------~iTd~s~~sla~~C~~l~~l~L~--------~c 200 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--------KITDSSLLSLARYCRKLRHLNLH--------SC 200 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--------eccHHHHHHHHHhcchhhhhhhc--------cc
Confidence 45789999996 678888999999999999999999994 68988888887 89999999994 46
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+++..++.++..|++|+.|++++|+.+...++..+.+++..++.+...+|...+...+..+...++-+..+++..|..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 78999999999999999999999999999998899999999999999889999999999988888999999999999998
Q ss_pred CCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCC
Q 011317 225 LTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRL 301 (488)
Q Consensus 225 ~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l 301 (488)
+++.....+. .+..|+.|..++|..+++..+.+++ ++++|+.|.+.+| .+++.++..++. +++.|+.+++..|..+
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLI 359 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhccccccee
Confidence 9988876665 7899999999999999999988887 7899999999999 799999999988 9999999999999888
Q ss_pred CHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCc
Q 011317 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 378 (488)
Q Consensus 302 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L 378 (488)
++..+..++.+| +.|+.|.+++|..++++++..+.. ....|..+.+++|+.+++..++.+. .|++|
T Consensus 360 ~d~tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~---------~c~~L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS---------ICRNL 428 (483)
T ss_pred hhhhHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh---------hCccc
Confidence 888899999988 999999999999999998887753 4467999999999999999999988 79999
Q ss_pred cEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 379 RLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 379 ~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+.+++.+|+.++..++..+.. .+|+++......-
T Consensus 429 eri~l~~~q~vtk~~i~~~~~-~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFAT-HLPNIKVHAYFAP 462 (483)
T ss_pred ceeeeechhhhhhhhhHHHHh-hCccceehhhccC
Confidence 999999999999999999988 7999998876654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-22 Score=186.16 Aligned_cols=298 Identities=19% Similarity=0.187 Sum_probs=213.3
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
..+|+.|+|..|.|+.-.-+.+. .+|.|++|||+.|. ++....+.+..-.++++|+|++ ++
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~---------N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLAS---------NR 184 (873)
T ss_pred ccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeecc---------cc
Confidence 56799999998887776656654 68999999999873 5554555566667899999973 44
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+++.....+ ..+.+|.+|.|+. +.++.. ....++.+++|+.|++..+.. .... ...++.+++|+.|.+.. +.+.
T Consensus 185 It~l~~~~F-~~lnsL~tlkLsr-NrittL-p~r~Fk~L~~L~~LdLnrN~i-rive-~ltFqgL~Sl~nlklqr-N~I~ 258 (873)
T KOG4194|consen 185 ITTLETGHF-DSLNSLLTLKLSR-NRITTL-PQRSFKRLPKLESLDLNRNRI-RIVE-GLTFQGLPSLQNLKLQR-NDIS 258 (873)
T ss_pred ccccccccc-cccchheeeeccc-Cccccc-CHHHhhhcchhhhhhccccce-eeeh-hhhhcCchhhhhhhhhh-cCcc
Confidence 544332222 3466899999998 577665 334457799999999987642 2111 11245778899998887 4554
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---H
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---D 303 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~ 303 (488)
...-..+..+.++++|++..+ .+....-..+-+++.|+.|+++.|.|.......+.. +++|+.|+++++. ++ .
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~-i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSNR-ITRLDE 334 (873)
T ss_pred cccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEeccccc-cccCCh
Confidence 333334557899999999874 666666566778999999999999877766666666 8999999999853 44 5
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC---CCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP---LIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
..+..+ .+|++|.|++ +.++.-.-.++ ..+.+|+.|++++|. .+.| +...+. .++.|++
T Consensus 335 ~sf~~L------~~Le~LnLs~-Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~IED-aa~~f~---------gl~~Lrk 396 (873)
T KOG4194|consen 335 GSFRVL------SQLEELNLSH-NSIDHLAEGAF-VGLSSLHKLDLRSNELSWCIED-AAVAFN---------GLPSLRK 396 (873)
T ss_pred hHHHHH------HHhhhhcccc-cchHHHHhhHH-HHhhhhhhhcCcCCeEEEEEec-chhhhc---------cchhhhh
Confidence 667777 7899999998 66663322222 257899999999883 1223 112222 6889999
Q ss_pred EeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 381 LDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 381 L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
|.+.+|+ +....-+++.. +++|++|++.+|.
T Consensus 397 L~l~gNq-lk~I~krAfsg--l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 397 LRLTGNQ-LKSIPKRAFSG--LEALEHLDLGDNA 427 (873)
T ss_pred eeecCce-eeecchhhhcc--CcccceecCCCCc
Confidence 9999998 88877778876 9999999999986
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-20 Score=198.52 Aligned_cols=306 Identities=19% Similarity=0.125 Sum_probs=133.2
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|++|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++++.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n~-------- 199 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASNQ-------- 199 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHh-cCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCCC--------
Confidence 366777777776665544333333 57777777777763 222222345566666666665332
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
+... +......+++|+.|+++++ .+....... +..+++|++|+++++..... +......+++|++|+++++. +
T Consensus 200 -l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~-l 272 (968)
T PLN00113 200 -LVGQ-IPRELGQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNK-L 272 (968)
T ss_pred -CcCc-CChHHcCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCe-e
Confidence 1100 0111123555555555553 332221111 23455555555554432111 11122344455555555432 2
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--H
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--D 303 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~ 303 (488)
.......+..+++|+.|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|.... +
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred eccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCC
Confidence 1111112334455555555543 222222233344455555555554443322222222 4445555554432110 1
Q ss_pred HHHHHHh------------------ccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 304 KCISALF------------------DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 304 ~~~~~l~------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
..+..+. ..+.+++|+.|+++++ .++......+. .+++|+.|++++| .++......+.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~~~-~~~~L~~L~L~~n-~l~~~~p~~~~- 425 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN-SLEGEIPKSLG-ACRSLRRVRLQDN-SFSGELPSEFT- 425 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC-EecccCCHHHh-CCCCCCEEECcCC-EeeeECChhHh-
Confidence 1111110 0001134444444442 22211111122 3566666666666 33322222222
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+. .+++|+.|++++|.
T Consensus 426 --------~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~L~~n~ 463 (968)
T PLN00113 426 --------KLPLVYFLDISNNN-LQGRINSRKW--DMPSLQMLSLARNK 463 (968)
T ss_pred --------cCCCCCEEECcCCc-ccCccChhhc--cCCCCcEEECcCce
Confidence 45667777777665 4443322232 26777777777765
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-19 Score=192.61 Aligned_cols=364 Identities=15% Similarity=0.066 Sum_probs=180.2
Q ss_pred CCccceeeeeecccccchhhHHHHHHHhhhccceeeeccc------cccccceecCCCCCCCCCCCccc--CCCCCCCcE
Q 011317 1 MQGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYI------SSVMVTELLSPNVEPHQSPNQIR--PSILPGIQK 72 (488)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~ 72 (488)
|.+|+.|.|+.+.- ...-...++..+. +|+.|++++. |......+....+.....-.... ...+++|++
T Consensus 92 l~~L~~L~Ls~n~~--~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQL--SGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCcc--CCcCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 45788888875432 2222233445566 8888888732 21111111111111111111111 123788889
Q ss_pred EEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHH
Q 011317 73 LCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGI 152 (488)
Q Consensus 73 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 152 (488)
|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++.+. +... +
T Consensus 169 L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~---------l~~~~p~~l~~l~~L~~L~L~~n~---------l~~~-~ 228 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQ---------LVGQIPRELGQMKSLKWIYLGYNN---------LSGE-I 228 (968)
T ss_pred EECccCcccccCChhhh-hCcCCCeeeccCCC---------CcCcCChHHcCcCCccEEECcCCc---------cCCc-C
Confidence 99887766554444444 68888888888874 333233345566677777765332 1110 0
Q ss_pred HHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC---------
Q 011317 153 LLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN--------- 223 (488)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------- 223 (488)
......+++|++|+++++ .+... ++..+..+++|+.|+++++..... +......+++|++|+++++.
T Consensus 229 p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYN-NLTGP-IPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCc-eeccc-cChhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCChhH
Confidence 111133555666666553 33222 112223455555555554432110 01111233455555555431
Q ss_pred --------------CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 224 --------------LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 224 --------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.......+.. +++
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~ 381 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGN 381 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--cCC
Confidence 111111122334444444444443 222222223344455555555555443322222222 445
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 369 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 369 (488)
|+.|++.++. +.......+ .. +++|+.|++++| .++......+. .+++|+.|++++| .++......+.
T Consensus 382 L~~L~l~~n~-l~~~~p~~~-~~--~~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~----- 449 (968)
T PLN00113 382 LFKLILFSNS-LEGEIPKSL-GA--CRSLRRVRLQDN-SFSGELPSEFT-KLPLVYFLDISNN-NLQGRINSRKW----- 449 (968)
T ss_pred CCEEECcCCE-ecccCCHHH-hC--CCCCCEEECcCC-EeeeECChhHh-cCCCCCEEECcCC-cccCccChhhc-----
Confidence 5555555543 221100111 11 289999999995 55532222232 6899999999998 55543222222
Q ss_pred CCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 370 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. +.......+ ..++|+.|++++|.
T Consensus 450 ----~l~~L~~L~L~~n~-~~~~~p~~~---~~~~L~~L~ls~n~ 486 (968)
T PLN00113 450 ----DMPSLQMLSLARNK-FFGGLPDSF---GSKRLENLDLSRNQ 486 (968)
T ss_pred ----cCCCCcEEECcCce-eeeecCccc---ccccceEEECcCCc
Confidence 68899999999998 443222222 25799999999886
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=148.21 Aligned_cols=145 Identities=28% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCCccEEEeCCCccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHH
Q 011317 260 SLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILT 336 (488)
Q Consensus 260 ~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~ 336 (488)
.+++|++|++++|.+++.++..+.. ..+++|+.|++++|. +++.+...+... ..+++|++|++++| .+++.++..
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~ 240 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA 240 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence 4455555555555555444333221 013456666665542 443333222111 11256666666663 455555544
Q ss_pred HHhcC----CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhcc--CC-CCccEEE
Q 011317 337 LATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKP--YF-PRLRWLG 409 (488)
Q Consensus 337 l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~--~~-~~L~~L~ 409 (488)
+...+ +.|+.|++++| .+++.+...+..... .+++|+.+++++|. +++.+...+... .. +.|+.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 241 LASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcc
Confidence 44332 56666666666 565555544443222 44566666666665 665543333220 12 4566666
Q ss_pred ecCC
Q 011317 410 VTGS 413 (488)
Q Consensus 410 l~~~ 413 (488)
+.++
T Consensus 314 ~~~~ 317 (319)
T cd00116 314 VKDD 317 (319)
T ss_pred cCCC
Confidence 5544
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-19 Score=169.81 Aligned_cols=276 Identities=20% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
.++++|+|++ +.|+...... +..+.+|..|.++++. ++..+.. .++.+|+|+.|++.. +.+.......+.++++|
T Consensus 173 ~ni~~L~La~-N~It~l~~~~-F~~lnsL~tlkLsrNr-ittLp~r-~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLAS-NRITTLETGH-FDSLNSLLTLKLSRNR-ITTLPQR-SFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCceEEeecc-cccccccccc-ccccchheeeecccCc-ccccCHH-Hhhhcchhhhhhccc-cceeeehhhhhcCchhh
Confidence 4577777776 4565443333 2345567777777654 3333322 344567777777776 34433323345577777
Q ss_pred CEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCC
Q 011317 240 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKL 316 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~ 316 (488)
+.|.+..+ .+....-.+|..+.++++|+|..|++....-..+. +++.|+.|+++++. +. .++...- +
T Consensus 248 ~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~Na-I~rih~d~Wsft------q 317 (873)
T KOG4194|consen 248 QNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNA-IQRIHIDSWSFT------Q 317 (873)
T ss_pred hhhhhhhc-CcccccCcceeeecccceeecccchhhhhhccccc--ccchhhhhccchhh-hheeecchhhhc------c
Confidence 77777653 34333334455678888888888866654333333 48889999988743 33 2222222 8
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH---HH
Q 011317 317 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ---LA 393 (488)
Q Consensus 317 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~---~~ 393 (488)
+|+.|+|++ +.++.-.-.++. .+..|++|++++| .++...-..+. .+.+|++|+++.|. ++. .+
T Consensus 318 kL~~LdLs~-N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~l~e~af~---------~lssL~~LdLr~N~-ls~~IEDa 384 (873)
T KOG4194|consen 318 KLKELDLSS-NRITRLDEGSFR-VLSQLEELNLSHN-SIDHLAEGAFV---------GLSSLHKLDLRSNE-LSWCIEDA 384 (873)
T ss_pred cceeEeccc-cccccCChhHHH-HHHHhhhhccccc-chHHHHhhHHH---------HhhhhhhhcCcCCe-EEEEEecc
Confidence 899999998 666632222222 3667999999988 55443322222 56789999999887 543 23
Q ss_pred HHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce-eecccccccCCccCCCCCe-----e-----eecCcchHHHHH
Q 011317 394 FRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN-VACRGEELGVDQWDNSDGM-----Y-----MHDYDEVDELEQ 462 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~ 462 (488)
...+.. +++|+.|.+.||....+...-....+.++ +...++.+.....+..... . ..=+-+++++.+
T Consensus 385 a~~f~g--l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 385 AVAFNG--LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred hhhhcc--chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 334443 89999999999975444444444555554 4444444443333322211 0 011245778899
Q ss_pred HHh
Q 011317 463 WLM 465 (488)
Q Consensus 463 ~~~ 465 (488)
|+.
T Consensus 463 Wl~ 465 (873)
T KOG4194|consen 463 WLY 465 (873)
T ss_pred HHH
Confidence 984
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=144.34 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=196.1
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHH-HHhcCCCCCEEEecCCCCCCHHHHHH-hhCCCC
Q 011317 161 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD-ISATSLSLTHVCLRWCNLLTNHAIKS-LASNTG 238 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~ 238 (488)
.-+.+|+.+ ..+.......+.+ .....+.+.... ..+..+.. ..-.-..|+++++++ ..++...+.. +.+|.+
T Consensus 137 lW~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 137 LWQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSK 211 (419)
T ss_pred ceeeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHh
Confidence 356778877 5666655555543 566667666432 22221221 112334799999998 4666555544 458999
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
|+.|.+.|. .+.|.....++...+|+.|+|+.| +++..++..+.. .|+.|.+|+++-|...++. +..+..+ ..++
T Consensus 212 Lk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~h-ise~ 287 (419)
T KOG2120|consen 212 LKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAH-ISET 287 (419)
T ss_pred hhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhh-hchh
Confidence 999999984 777877888888999999999997 889888888777 7999999999999755554 3333222 2289
Q ss_pred eeEEecCCCC-CCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHH
Q 011317 318 LQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 396 (488)
Q Consensus 318 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 396 (488)
|+.|+++||. ++....+..+.+.||+|..|+++.|..+++..+..+. .++.|++|.++.|+.|....+-+
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---------kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------KFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---------hcchheeeehhhhcCCChHHeee
Confidence 9999999984 4567788999999999999999999889997777766 68999999999999888887777
Q ss_pred hhccCCCCccEEEecCCCCHHHHHHHHhhCCCceeeccc
Q 011317 397 LKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRG 435 (488)
Q Consensus 397 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (488)
+.. -|+|.+|++.||..+..++.+....|++++.+..
T Consensus 359 l~s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~ 395 (419)
T KOG2120|consen 359 LNS--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQH 395 (419)
T ss_pred ecc--CcceEEEEeccccCchHHHHHHHhCcccccccee
Confidence 765 8999999999999999999999999999887653
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=170.42 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
..+|+.|++..+.+..- ...+ ..+++|+.|+|+++..+ . .++.++.+++|++|++++|... ..
T Consensus 610 ~~~L~~L~L~~s~l~~L-~~~~-~~l~~Lk~L~Ls~~~~l--------~--~ip~ls~l~~Le~L~L~~c~~L-----~~ 672 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKL-WDGV-HSLTGLRNIDLRGSKNL--------K--EIPDLSMATNLETLKLSDCSSL-----VE 672 (1153)
T ss_pred ccCCcEEECcCcccccc-cccc-ccCCCCCEEECCCCCCc--------C--cCCccccCCcccEEEecCCCCc-----cc
Confidence 45677777776555431 1122 35677777777766422 1 1123455677777777544211 11
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 221 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 221 (488)
+......+++|+.|++++|..+.... .. ..+++|+.|++++|..+...+ ...++|+.|++++
T Consensus 673 -----lp~si~~L~~L~~L~L~~c~~L~~Lp-~~--i~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L~L~~ 734 (1153)
T PLN03210 673 -----LPSSIQYLNKLEDLDMSRCENLEILP-TG--INLKSLYRLNLSGCSRLKSFP-----DISTNISWLDLDE 734 (1153)
T ss_pred -----cchhhhccCCCCEEeCCCCCCcCccC-Cc--CCCCCCCEEeCCCCCCccccc-----cccCCcCeeecCC
Confidence 11222446677777777765544321 11 145677777777665433211 1234566666655
|
syringae 6; Provisional |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=136.09 Aligned_cols=257 Identities=23% Similarity=0.218 Sum_probs=171.4
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHH---HHHHHhCCCCceEEecCCCCCC-HHHH---HHHHhcCCCCCEEEe
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGF---KTILHSCSNLYKLRVSHGTQLT-DLVF---HDISATSLSLTHVCL 219 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~~~L~~L~l 219 (488)
+.+.....++..+++|+.|+++++ .++..+. .......++|++|+++++..-. ...+ ......+++|++|++
T Consensus 10 l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 10 LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 333334445555777999999985 6655443 3344456779999998765321 2222 223345789999999
Q ss_pred cCCCCCCHHHHHHhhCC---CCcCEEeccCCCCCChHHHH----hhcCC-CCccEEEeCCCccchhHHHHHHh--hcCCC
Q 011317 220 RWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL--TVITS 289 (488)
Q Consensus 220 ~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~~~~l~~--~~~~~ 289 (488)
+++. +.......+..+ ++|++|++++| .+.+.+.. .+..+ ++|+.|++++|.++..+...+.. ..+++
T Consensus 89 ~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 89 SDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred cCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 9864 332222233322 56999999986 45544433 33466 89999999999888554433322 14679
Q ss_pred ccEEecCCCCCCCHHHHHHHhccC-CCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
|++|++++|. +++.++..+.... ..++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..++.
T Consensus 167 L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~ 243 (319)
T cd00116 167 LKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALAS 243 (319)
T ss_pred cCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHH
Confidence 9999999964 7766555443211 1269999999996 7776665544 335789999999999 899888888776
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
.... ..+.|++|++++|. +++.+...+.. +.+++|+++++++|.
T Consensus 244 ~~~~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 244 ALLS----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHhc----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 3211 24799999999997 87655544432 236899999999986
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-16 Score=134.93 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=88.9
Q ss_pred CcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccCh
Q 011317 70 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVND 149 (488)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (488)
|++|||+...++...+..+.+.|..|+.|.|.|. .+.+.....++.-.+|+.|+++ .+..++.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~---------~LdD~I~~~iAkN~~L~~lnls--------m~sG~t~ 249 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL---------RLDDPIVNTIAKNSNLVRLNLS--------MCSGFTE 249 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccc---------ccCcHHHHHHhccccceeeccc--------cccccch
Confidence 5555555555555555555555555555555554 2444444445555555555552 2444555
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHh-CCCCceEEecCCCC-CCHHHHHHHHhcCCCCCEEEecCCCCCCH
Q 011317 150 LGILLMADKCASMESICLGGFCRVTDTGFKTILHS-CSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHVCLRWCNLLTN 227 (488)
Q Consensus 150 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 227 (488)
.++..+...|+.|..|+|++|...++. +..++.+ -++|+.|+++|+.. +....+..+.+.||+|.+|+++.|..+.+
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 555555555555555555554333332 2222222 23455555554432 23333444444555555555555544544
Q ss_pred HHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 228 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
.-+..+.+++.|++|.++.|..+....+-.+...|.|.+|++.+|
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 444444455555555555554444444333444445555554443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=128.80 Aligned_cols=205 Identities=22% Similarity=0.271 Sum_probs=100.5
Q ss_pred CCCCCEEEEcCCCCCCH---HHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhC
Q 011317 159 CASMESICLGGFCRVTD---TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS 235 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 235 (488)
+|+|++|+||+ +.+.. .++..+++++..|++|.+.+|. +...+-..+.+. |.+|. .....+.
T Consensus 91 ~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~a---l~~l~----------~~kk~~~ 155 (382)
T KOG1909|consen 91 CPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRA---LFELA----------VNKKAAS 155 (382)
T ss_pred CCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHH---HHHHH----------HHhccCC
Confidence 56677777766 34433 2344555666777777777665 333333333221 11111 0112234
Q ss_pred CCCcCEEeccCCCCCChHHHH----hhcCCCCccEEEeCCCccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHH
Q 011317 236 NTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISAL 309 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l 309 (488)
.++|+++....+ .+.+.+.. .+...+.|+.+.+..|.|...+...+.. ..|++|+.|++..+ .++..+-..+
T Consensus 156 ~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~L 233 (382)
T KOG1909|consen 156 KPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVAL 233 (382)
T ss_pred CcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHH
Confidence 556666666553 34333322 2335567777777776665555432221 25777777777763 2443333332
Q ss_pred hcc-CCCCCeeEEecCCCCCCCHHHHHH----HHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 310 FDG-TSKLQLQELDLSNLPHLSDNGILT----LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 310 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
+.. +.+++|+.|++++| .+...|..+ +....|+|+.|.+.+| .++..+...++.... ..|.|+.|+++
T Consensus 234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~-----ek~dL~kLnLn 306 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMA-----EKPDLEKLNLN 306 (382)
T ss_pred HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh-----cchhhHHhcCC
Confidence 211 12255666666665 344333332 2334456666666666 555444444332221 34555555555
Q ss_pred CCC
Q 011317 385 NCG 387 (488)
Q Consensus 385 ~~~ 387 (488)
+|.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 555
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=140.24 Aligned_cols=252 Identities=28% Similarity=0.383 Sum_probs=124.7
Q ss_pred cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcC-CCCCC--HHHHHHHHHhCCCCceEEecCCCCCC
Q 011317 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGG-FCRVT--DTGFKTILHSCSNLYKLRVSHGTQLT 200 (488)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~ 200 (488)
.++.|+.|.+.+ +..+++.++..+...+++|+.|++++ |..+. ......+...+++|+.|+++.+..++
T Consensus 186 ~~~~L~~l~l~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSG--------CSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcc--------cccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 456666666632 34444444555555566666666655 22221 11122344455666666666655566
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCc----c
Q 011317 201 DLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD----I 274 (488)
Q Consensus 201 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~----i 274 (488)
+.++..+...|++|+.|.+.+|..+++.++..+. .+++|++|++++|..+++.++..+. ++++|+.|.+.... +
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence 6666666666666666666666555566555554 4566666666666655555444332 45555554443321 2
Q ss_pred chhHHHHHHhhcC-CCccEEecCCCCCCCHHHHHHHhccCCCCCee-EEecCCCCCCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 275 SDVGVSYLRLTVI-TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ-ELDLSNLPHLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 275 ~~~~~~~l~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
++..+..+.. .. ..+..+.+.+|.++++..+.... . .... .+.+.+|+.++ .++......+..++.|++..|
T Consensus 338 ~~~~l~~~~~-~~~d~~~~~~~~~~~~l~~~~l~~~~-~---~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 338 TDLSLSGLLT-LTSDDLAELILRSCPKLTDLSLSYCG-I---SDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred HHHHHHHhhc-cCchhHhHHHHhcCCCcchhhhhhhh-c---cCcchHHHhcCCcccc-hHHHHHhccCCccceEecccC
Confidence 2222222222 11 12333333333333333322221 0 1111 34444555554 444444433444666666666
Q ss_pred CCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 353 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 353 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
..+++..+..... .+.+++.+++.+|..++......+
T Consensus 412 ~~~t~~~l~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~ 448 (482)
T KOG1947|consen 412 RLVTDKGLRCLAD--------SCSNLKDLDLSGCRVITLKSLEGF 448 (482)
T ss_pred ccccccchHHHhh--------hhhccccCCccCcccccchhhhhh
Confidence 5566666655553 355566666666665555554443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=119.77 Aligned_cols=262 Identities=23% Similarity=0.295 Sum_probs=174.9
Q ss_pred HHHHHhCCCCCEEEEcCCCCCCHHHHHHHHH---hCCCCceEEecCCCC--CCHHH------HHHHHhcCCCCCEEEecC
Q 011317 153 LLMADKCASMESICLGGFCRVTDTGFKTILH---SCSNLYKLRVSHGTQ--LTDLV------FHDISATSLSLTHVCLRW 221 (488)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~--~~~~~------~~~~~~~~~~L~~L~l~~ 221 (488)
.........++.+++++ +.+.....+.+.. ..++|+..+++.... +.+.. +......+|+|+.|+++.
T Consensus 23 ~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33444578899999999 5666555554444 445677777664321 11111 122233678999999998
Q ss_pred CCCCCHHHHHHh----hCCCCcCEEeccCCCCCChHHHHhh-------------cCCCCccEEEeCCCccchhHHHHHHh
Q 011317 222 CNLLTNHAIKSL----ASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGVSYLRL 284 (488)
Q Consensus 222 ~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~i~~~~~~~l~~ 284 (488)
+.++..+...+ ..+..|++|.+.+| .+...+-..+ ..-+.|+.+....|++.+.+...++.
T Consensus 102 -NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 102 -NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred -cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 56666655544 37899999999987 4554433332 24578999999888877766544332
Q ss_pred --hcCCCccEEecCCCCCCCHHHHHHH---hccCCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCC
Q 011317 285 --TVITSLVKLSLRGCKRLTDKCISAL---FDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIG 356 (488)
Q Consensus 285 --~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~ 356 (488)
..++.|+.+.+..+ .+.+.++..+ +.+| ++|+.|+|.. +.++..+-.++++ .+++|+.|++++| .+.
T Consensus 180 ~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~--~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHC--PHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred HHHhccccceEEEecc-cccCchhHHHHHHHHhC--Ccceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccc
Confidence 14688999998874 4666655333 2335 8999999988 6777666555544 4567889999999 888
Q ss_pred HHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC---CHHHHHHHHhhCC
Q 011317 357 DTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV---NRDILDALARSRP 427 (488)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~---~~~~~~~~~~~~~ 427 (488)
+.|..++..++.. ..|+|+.|.+.+|. |+..+...+.. +.-|.|+.|++++|. ....+..+...++
T Consensus 255 ~~Ga~a~~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 255 NEGAIAFVDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred cccHHHHHHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 8887777765544 67899999999998 77766554443 236889999999885 3456666665554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-16 Score=149.71 Aligned_cols=297 Identities=20% Similarity=0.220 Sum_probs=147.6
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHH-hhhcCCCccEEEcccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ-QINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.+.+|++|.+..|.+.. ..+.+ +.+|.|+.+.++.|. +.+.+++ .+..+..|+.|+|+.++-
T Consensus 53 ~lqkLEHLs~~HN~L~~-vhGEL-s~Lp~LRsv~~R~N~---------LKnsGiP~diF~l~dLt~lDLShNqL------ 115 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLIS-VHGEL-SDLPRLRSVIVRDNN---------LKNSGIPTDIFRLKDLTILDLSHNQL------ 115 (1255)
T ss_pred HHhhhhhhhhhhhhhHh-hhhhh-ccchhhHHHhhhccc---------cccCCCCchhcccccceeeecchhhh------
Confidence 35677777776555443 23333 367777777777763 3333333 355677777777764331
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..++ .-....+++-.|+|++ ++|... +..++.++..|-.|+++++. +.. +..-.+.+.+|+.|.+++ +.
T Consensus 116 ~EvP-----~~LE~AKn~iVLNLS~-N~IetI-Pn~lfinLtDLLfLDLS~Nr-Le~--LPPQ~RRL~~LqtL~Ls~-NP 184 (1255)
T KOG0444|consen 116 REVP-----TNLEYAKNSIVLNLSY-NNIETI-PNSLFINLTDLLFLDLSNNR-LEM--LPPQIRRLSMLQTLKLSN-NP 184 (1255)
T ss_pred hhcc-----hhhhhhcCcEEEEccc-CccccC-CchHHHhhHhHhhhccccch-hhh--cCHHHHHHhhhhhhhcCC-Ch
Confidence 1111 1112345666777776 344433 33444556666666776543 211 111233445667777766 34
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-- 302 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-- 302 (488)
+....+..+..+++|+.|++++....-+.....+..+.+|..++++.|++... ...+.. +++|+.|+++++ .++
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~--l~~LrrLNLS~N-~iteL 260 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYK--LRNLRRLNLSGN-KITEL 260 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhh--hhhhheeccCcC-ceeee
Confidence 44444444445555566666654433332223333444555555555443321 111222 445555555542 232
Q ss_pred -----------------------HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHH
Q 011317 303 -----------------------DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359 (488)
Q Consensus 303 -----------------------~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 359 (488)
++.+..+ ++|+.|.+.+ ++++-+|+..-...+.+|+.+...+| .+. ..
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL------~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LE-lV 331 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKL------TKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLE-LV 331 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhh------HHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccc-cC
Confidence 2222222 4444444444 33432222111112334444444443 211 01
Q ss_pred HHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCCCH
Q 011317 360 VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNR 416 (488)
Q Consensus 360 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~ 416 (488)
.+.++ .|+.|+.|.++.|.-|+-...-++ ++.|+.|+++.++..
T Consensus 332 PEglc---------RC~kL~kL~L~~NrLiTLPeaIHl----L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 332 PEGLC---------RCVKLQKLKLDHNRLITLPEAIHL----LPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhh---------hhHHHHHhcccccceeechhhhhh----cCCcceeeccCCcCc
Confidence 11222 688999999999886664322233 789999999999843
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-13 Score=134.19 Aligned_cols=201 Identities=30% Similarity=0.422 Sum_probs=108.7
Q ss_pred CCCCCEEEEcCCCC-CCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCCHHH---HHHh
Q 011317 159 CASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW-CNLLTNHA---IKSL 233 (488)
Q Consensus 159 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~---~~~l 233 (488)
+..++.+.+..+.. ........+...++.|+.|.+.++..+.+..+..+...++.|+.|++++ +......+ ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 34445554444322 2333344444456667777776666666655555666666777777665 22221111 1122
Q ss_pred hCCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCc-cchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhc
Q 011317 234 ASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFD 311 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 311 (488)
..+++|+.|+++++..+++.++..++ .|++|+.|.+.+|. +++.++..+.. .++.|++|++++|..+++.++..+..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHHHHHH
Confidence 25566777777766556666666665 36677777766664 66667666666 66667777777776666666666655
Q ss_pred cCCCCCeeEEecCC---CCCCCHHHHHHHHhcCC-CCCeEeecCCCCCCHHHHHH
Q 011317 312 GTSKLQLQELDLSN---LPHLSDNGILTLATCRV-PISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 312 ~~~~~~L~~L~l~~---~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~ 362 (488)
.| ++|+.|.+.. |..++..++..+..... .+..+.+.+|+.+++..+..
T Consensus 319 ~c--~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 319 NC--PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY 371 (482)
T ss_pred hC--cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh
Confidence 54 5555544333 23344444443332221 34444444444444444433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-13 Score=145.90 Aligned_cols=289 Identities=18% Similarity=0.205 Sum_probs=159.9
Q ss_pred CCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccC
Q 011317 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
+|+.|.+.++.+..- ...+ .+.+|++|++.++. +.. ....+..+++|+.|+++.+.. ...++
T Consensus 590 ~Lr~L~~~~~~l~~l-P~~f--~~~~L~~L~L~~s~---------l~~-L~~~~~~l~~Lk~L~Ls~~~~-----l~~ip 651 (1153)
T PLN03210 590 KLRLLRWDKYPLRCM-PSNF--RPENLVKLQMQGSK---------LEK-LWDGVHSLTGLRNIDLRGSKN-----LKEIP 651 (1153)
T ss_pred ccEEEEecCCCCCCC-CCcC--CccCCcEEECcCcc---------ccc-cccccccCCCCCEEECCCCCC-----cCcCC
Confidence 466666654332221 0011 34567777777653 211 111234678889998865432 12222
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 228 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 228 (488)
+ ...+++|+.|++++|..+... +..+..+++|+.|++++|..+...+.. ..+++|+.|++++|..+...
T Consensus 652 ~------ls~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 652 D------LSMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred c------cccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccc
Confidence 2 134788999999988665432 233466889999999988765543321 15678999999988655332
Q ss_pred HHHHhhCCCCcCEEeccCCCCCChHHHH-----------------------------hhcCCCCccEEEeCCCccchhHH
Q 011317 229 AIKSLASNTGIKVLDLRDCKNLGDEALR-----------------------------AISSLPQLKILLLDGSDISDVGV 279 (488)
Q Consensus 229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------------------~l~~~~~L~~L~l~~~~i~~~~~ 279 (488)
+. ..++|+.|+++++. +...... .....++|+.|++++|.......
T Consensus 721 p~----~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 721 PD----ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred cc----ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence 11 23566777776542 2111000 00123456666666653222222
Q ss_pred HHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHH
Q 011317 280 SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359 (488)
Q Consensus 280 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 359 (488)
..+.. +++|+.|++++|..++. +.....+++|++|++++|..+... ....++|+.|+++++ .++...
T Consensus 796 ~si~~--L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~n-~i~~iP 862 (1153)
T PLN03210 796 SSIQN--LHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTF-----PDISTNISDLNLSRT-GIEEVP 862 (1153)
T ss_pred hhhhC--CCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccc-----cccccccCEeECCCC-CCccCh
Confidence 22333 66777777777665442 111112366777777777554321 112356777777776 444211
Q ss_pred HHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCCCHH
Q 011317 360 VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRD 417 (488)
Q Consensus 360 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 417 (488)
..+. .+++|+.|++++|.++..... ... .+++|+.+++++|....
T Consensus 863 -~si~---------~l~~L~~L~L~~C~~L~~l~~-~~~--~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 863 -WWIE---------KFSNLSFLDMNGCNNLQRVSL-NIS--KLKHLETVDFSDCGALT 907 (1153)
T ss_pred -HHHh---------cCCCCCEEECCCCCCcCccCc-ccc--cccCCCeeecCCCcccc
Confidence 1122 678899999999887776332 122 47888888888887543
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-14 Score=136.21 Aligned_cols=270 Identities=18% Similarity=0.169 Sum_probs=148.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+..|+.|+|+.|.+.. ....+ .+.+++-+|+|++|. |....-+.+.++..|-.|+|+.+ +
T Consensus 102 l~dLt~lDLShNqL~E-vP~~L-E~AKn~iVLNLS~N~---------IetIPn~lfinLtDLLfLDLS~N---------r 161 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLRE-VPTNL-EYAKNSIVLNLSYNN---------IETIPNSLFINLTDLLFLDLSNN---------R 161 (1255)
T ss_pred cccceeeecchhhhhh-cchhh-hhhcCcEEEEcccCc---------cccCCchHHHhhHhHhhhccccc---------h
Confidence 4455555555544432 11111 245555566666552 32222223334455555555422 1
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+. .++.-...+..|++|+|++ +.+....+..+ -.+++|+.|.+++... +-..+......+.+|..++++. ++++
T Consensus 162 Le--~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQL-PsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp 235 (1255)
T KOG0444|consen 162 LE--MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQL-PSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLP 235 (1255)
T ss_pred hh--hcCHHHHHHhhhhhhhcCC-ChhhHHHHhcC-ccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCC
Confidence 11 1111223455677777776 34433333332 1244556666665332 1111222233445777777775 4444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC----
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---- 302 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---- 302 (488)
..+ ..+..+++|+.|+++++ .++...+ ....-.+|++|+++.|.++. -...+.. ++.|+.|.+.++ .++
T Consensus 236 ~vP-ecly~l~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcK--L~kL~kLy~n~N-kL~FeGi 308 (1255)
T KOG0444|consen 236 IVP-ECLYKLRNLRRLNLSGN-KITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCK--LTKLTKLYANNN-KLTFEGI 308 (1255)
T ss_pred cch-HHHhhhhhhheeccCcC-ceeeeec-cHHHHhhhhhhccccchhcc-chHHHhh--hHHHHHHHhccC-cccccCC
Confidence 322 24557778888888774 4433221 12234567778888776653 2233444 778888888763 465
Q ss_pred HHHHHHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 303 DKCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 303 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
+.++..+ .+|+.+..++ +.+. ++++. .|+.|+.|.++.|.-++-..... -++.|+.
T Consensus 309 PSGIGKL------~~Levf~aan-N~LElVPEglc----RC~kL~kL~L~~NrLiTLPeaIH-----------lL~~l~v 366 (1255)
T KOG0444|consen 309 PSGIGKL------IQLEVFHAAN-NKLELVPEGLC----RCVKLQKLKLDHNRLITLPEAIH-----------LLPDLKV 366 (1255)
T ss_pred ccchhhh------hhhHHHHhhc-cccccCchhhh----hhHHHHHhcccccceeechhhhh-----------hcCCcce
Confidence 3445555 6788888887 4544 77766 69999999999986565332222 4678999
Q ss_pred EeccCCCCCCH
Q 011317 381 LDLYNCGGITQ 391 (488)
Q Consensus 381 L~l~~~~~i~~ 391 (488)
|++..|+++-.
T Consensus 367 LDlreNpnLVM 377 (1255)
T KOG0444|consen 367 LDLRENPNLVM 377 (1255)
T ss_pred eeccCCcCccC
Confidence 99999997654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=98.14 Aligned_cols=169 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred hCCCCcCEEeccCCCCCChHHH----HhhcCCCCccEEEeCCCccchhHH-------HHHHh----hcCCCccEEecCCC
Q 011317 234 ASNTGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGV-------SYLRL----TVITSLVKLSLRGC 298 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~-------~~l~~----~~~~~L~~L~l~~~ 298 (488)
.+||.|+..+++++ .+..... ..++..+.|.+|.+++|.+...+- .+++. +.-|.|++.....+
T Consensus 89 lkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 35666666666552 2222211 223355566666666664433211 11111 13456666666553
Q ss_pred CCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHH----hcCCCCCeEeecCCCCCCHHHHHHHHcccccCC
Q 011317 299 KRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA----TCRVPISELRVRQCPLIGDTSVIALASMLVDDD 371 (488)
Q Consensus 299 ~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 371 (488)
. +. ..-........ .+|+.+.+.+ +.|.+.|+..+. ..|.+|+.|++..| .++-.+-..++.++.
T Consensus 168 R-lengs~~~~a~~l~sh--~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~--- 239 (388)
T COG5238 168 R-LENGSKELSAALLESH--ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC--- 239 (388)
T ss_pred h-hccCcHHHHHHHHHhh--cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc---
Confidence 2 22 12222222222 5677777777 567766655441 24677888888777 666666666655444
Q ss_pred CCCCCCccEEeccCCCCCCHHHHHHhhc----cCCCCccEEEecCCC
Q 011317 372 RWYGSSIRLLDLYNCGGITQLAFRWLKK----PYFPRLRWLGVTGSV 414 (488)
Q Consensus 372 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~~~ 414 (488)
..+.|+.|.+.+|- ++..+...+.. ...|+|+.|...++.
T Consensus 240 --~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 240 --EWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred --ccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 56667888887776 66554443332 346777777766654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-11 Score=112.40 Aligned_cols=208 Identities=17% Similarity=0.165 Sum_probs=115.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhh-cCCCccEEEccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
+.+|+.+.|..+.+.........+.||+++.|+|+.|- -.....+..|. ++|+|+.|+++.+. +.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--------~~nw~~v~~i~eqLp~Le~LNls~Nr------l~ 185 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--------FHNWFPVLKIAEQLPSLENLNLSSNR------LS 185 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhh--------HHhHHHHHHHHHhcccchhccccccc------cc
Confidence 66777777776666665554555677788888877762 12223333333 77777777776432 11
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
...+.... ..+++|+.|.|+.| +++...+..+...+|+|+.|.+..+..+...... ......|++|++++.+.+
T Consensus 186 ~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 186 NFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLI 259 (505)
T ss_pred CCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccc
Confidence 11111111 13566777777776 6666667777777777777777765322111111 112346777777775555
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHH------hhcCCCCccEEEeCCCccchh-HHHHHHhhcCCCccEEecCC
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALR------AISSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------~l~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~~L~~L~l~~ 297 (488)
........+.+|.|+.|.++.| .+.+.... ....+|+|+.|++..|++.+- .+..+-. +++|+.|.+..
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred ccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 4444445556777777777664 33322111 123566777777777666432 2222222 45555555543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9e-12 Score=124.07 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=66.6
Q ss_pred CCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC--CCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 262 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC--KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+.|+.|.+.+|.+++..+..+.. .++|+.|+++++ +.+.+..+..+ +.|++|+++| +.++.-. ..++
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL~~fpas~~~kl------e~LeeL~LSG-NkL~~Lp-~tva- 427 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRLNSFPASKLRKL------EELEELNLSG-NKLTTLP-DTVA- 427 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhcc--ccceeeeeecccccccCCHHHHhch------HHhHHHhccc-chhhhhh-HHHH-
Confidence 44556666666666665555544 666666666664 22334444444 5666666666 4554222 1111
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.|+.|+.|...+| .+.- +..++ .++.|+.+|++.|. ++...+..... .|+||+|+++||.
T Consensus 428 ~~~~L~tL~ahsN-~l~~--fPe~~---------~l~qL~~lDlS~N~-L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLS--FPELA---------QLPQLKVLDLSCNN-LSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhHHHhhcCC-ceee--chhhh---------hcCcceEEecccch-hhhhhhhhhCC--CcccceeeccCCc
Confidence 3555666655555 2221 22333 45666666666655 55544443332 3566666666665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-11 Score=108.40 Aligned_cols=218 Identities=21% Similarity=0.201 Sum_probs=112.7
Q ss_pred HhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHhhC
Q 011317 157 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN-HAIKSLAS 235 (488)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 235 (488)
+++.+|+.+.|.++ .+...+.....+.|++++.|+++++-.....++..++..+|+|+.|+++.. .+.. .....
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~--- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT--- 192 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccc---
Confidence 45667777777774 555554444556778888888877655555666667777777777777663 2210 00000
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
-..+++|+.|.|+.|+++......+.. .+|+|+.|.+.++..+.......- .+
T Consensus 193 ----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~-~fPsl~~L~L~~N~~~~~~~~~~~----i~ 245 (505)
T KOG3207|consen 193 ----------------------TLLLSHLKQLVLNSCGLSWKDVQWILL-TFPSLEVLYLEANEIILIKATSTK----IL 245 (505)
T ss_pred ----------------------hhhhhhhheEEeccCCCCHHHHHHHHH-hCCcHHHhhhhcccccceecchhh----hh
Confidence 003345566666666666555555544 566666666666432221111110 11
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAF 394 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~ 394 (488)
..|++|+|++.+.++-......+ .+|.|+.|+++.| .+.+............ ..+++|++|++..|+ |.+ ..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~-~l~~L~~Lnls~t-gi~si~~~d~~s~~kt---~~f~kL~~L~i~~N~-I~~w~sl 319 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVG-TLPGLNQLNLSST-GIASIAEPDVESLDKT---HTFPKLEYLNISENN-IRDWRSL 319 (505)
T ss_pred hHHhhccccCCcccccccccccc-cccchhhhhcccc-CcchhcCCCccchhhh---cccccceeeecccCc-ccccccc
Confidence 45666677664444322222222 4666666666666 3333222111000000 056677777777766 322 334
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011317 395 RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++.. .++|++|.+..+.
T Consensus 320 ~~l~~--l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 320 NHLRT--LENLKHLRITLNY 337 (505)
T ss_pred chhhc--cchhhhhhccccc
Confidence 44432 5566666655443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-10 Score=116.10 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=85.9
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCC
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTS 314 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~ 314 (488)
+.|+.|.+.+ +.+++..+..+.++++|+.|+|++|.+....-..+.. +..|+.|.++|+ .++ ++.+...
T Consensus 359 ~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~LSGN-kL~~Lp~tva~~----- 429 (1081)
T KOG0618|consen 359 AALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNLSGN-KLTTLPDTVANL----- 429 (1081)
T ss_pred HHHHHHHHhc-CcccccchhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhcccc-hhhhhhHHHHhh-----
Confidence 4455566666 4677777777778889999999988766544444444 777888999884 455 3333333
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCC
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 388 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 388 (488)
++|++|...+ +.+.... .++ .++.|+.++++.| .++...+.... ..|+|++|+++||..
T Consensus 430 -~~L~tL~ahs-N~l~~fP--e~~-~l~qL~~lDlS~N-~L~~~~l~~~~---------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 430 -GRLHTLRAHS-NQLLSFP--ELA-QLPQLKVLDLSCN-NLSEVTLPEAL---------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhhHHHhhcC-Cceeech--hhh-hcCcceEEecccc-hhhhhhhhhhC---------CCcccceeeccCCcc
Confidence 7788887776 4443111 222 4788999999877 77766665544 347899999998873
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=82.22 Aligned_cols=158 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred HhhcCCCCccEEEeCCCccchhHH---HHHHhhcCCCccEEecCCCCCCCHHH-------HHHHhc---cCCCCCeeEEe
Q 011317 256 RAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLRGCKRLTDKC-------ISALFD---GTSKLQLQELD 322 (488)
Q Consensus 256 ~~l~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~~~~~l~~~~-------~~~l~~---~~~~~~L~~L~ 322 (488)
.++..||.|+..++++|.+..... ..+.. ..+.|.+|.+.+|. +.+.+ +..++. ...-|.|+++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 455689999999999996665433 33333 57899999999874 55322 222221 12228899999
Q ss_pred cCCCCCCC---HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc
Q 011317 323 LSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK 399 (488)
Q Consensus 323 l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 399 (488)
... +.+. ..-.....+.-.+|+.+.+..| .|...|+..++..-.. ++++|+.|++.+|. ++..+-..+..
T Consensus 164 cgr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~----y~~~LevLDlqDNt-ft~~gS~~La~ 236 (388)
T COG5238 164 CGR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLF----YSHSLEVLDLQDNT-FTLEGSRYLAD 236 (388)
T ss_pred ecc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHH----HhCcceeeeccccc-hhhhhHHHHHH
Confidence 887 4443 2223333333368999999999 8888877665432111 79999999999998 88776665554
Q ss_pred c--CCCCccEEEecCCC-CHHHHHHH
Q 011317 400 P--YFPRLRWLGVTGSV-NRDILDAL 422 (488)
Q Consensus 400 ~--~~~~L~~L~l~~~~-~~~~~~~~ 422 (488)
+ .++.|+.|.+..|. +...+.++
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred HhcccchhhhccccchhhccccHHHH
Confidence 2 36789999999995 33344443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.7e-09 Score=105.54 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=6.8
Q ss_pred CCCccEEEecCCC
Q 011317 402 FPRLRWLGVTGSV 414 (488)
Q Consensus 402 ~~~L~~L~l~~~~ 414 (488)
+++|+.|++++|+
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 4455555555554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=103.56 Aligned_cols=160 Identities=21% Similarity=0.245 Sum_probs=84.0
Q ss_pred CCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGT 313 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~ 313 (488)
-.+|++|+++|...+.......++ .+|+|++|.+++-.+....+..+.. ++|+|..|++++++ ++ -.|+..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~-sFpNL~sLDIS~Tn-I~nl~GIS~L---- 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA-SFPNLRSLDISGTN-ISNLSGISRL---- 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhh-ccCccceeecCCCC-ccCcHHHhcc----
Confidence 345666666654444333344444 4566666666665555555555555 56666666666643 33 2444444
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|+.|.+.+..-.+...+..+. ++++|+.|||+.-....+. .+........ .+|+|+.||.++.. ++..
T Consensus 195 --knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~-----~LpeLrfLDcSgTd-i~~~ 265 (699)
T KOG3665|consen 195 --KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGM-----VLPELRFLDCSGTD-INEE 265 (699)
T ss_pred --ccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcc-----cCccccEEecCCcc-hhHH
Confidence 66666666664333334455555 3666666666655433332 1221111111 56666666666665 6666
Q ss_pred HHHHhhccCCCCccEEEec
Q 011317 393 AFRWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~ 411 (488)
.+..+.. ..|+|+.+.+-
T Consensus 266 ~le~ll~-sH~~L~~i~~~ 283 (699)
T KOG3665|consen 266 ILEELLN-SHPNLQQIAAL 283 (699)
T ss_pred HHHHHHH-hCccHhhhhhh
Confidence 6655555 45555555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-09 Score=108.19 Aligned_cols=245 Identities=19% Similarity=0.179 Sum_probs=145.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|+.|.+..|.++.. ....++|++|++++|. ++. ++. ..++|+.|+++.+ .
T Consensus 221 ~~~L~~L~L~~N~Lt~L-----P~lp~~Lk~LdLs~N~---------Lts--LP~--lp~sL~~L~Ls~N---------~ 273 (788)
T PRK15387 221 PAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ---------LTS--LPV--LPPGLLELSIFSN---------P 273 (788)
T ss_pred hcCCCEEEccCCcCCCC-----CCCCCCCcEEEecCCc---------cCc--ccC--cccccceeeccCC---------c
Confidence 45788888887766641 1245788888888873 332 111 2357788887532 1
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
++ .+....++|+.|+++++ .+... + ...++|+.|+++++. +...+ ....+|+.|.++++ .+.
T Consensus 274 L~-----~Lp~lp~~L~~L~Ls~N-~Lt~L--P---~~p~~L~~LdLS~N~-L~~Lp-----~lp~~L~~L~Ls~N-~L~ 335 (788)
T PRK15387 274 LT-----HLPALPSGLCKLWIFGN-QLTSL--P---VLPPGLQELSVSDNQ-LASLP-----ALPSELCKLWAYNN-QLT 335 (788)
T ss_pred hh-----hhhhchhhcCEEECcCC-ccccc--c---ccccccceeECCCCc-cccCC-----CCcccccccccccC-ccc
Confidence 21 11122356888888873 55432 1 234678888888764 32211 12246777877774 443
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
..+ . ...+|+.|+++++ .+.... . ..++|+.|++++|.+... . . ..++|+.|+++++. ++. +
T Consensus 336 ~LP--~--lp~~Lq~LdLS~N-~Ls~LP--~--lp~~L~~L~Ls~N~L~~L--P---~-l~~~L~~LdLs~N~-Lt~--L 397 (788)
T PRK15387 336 SLP--T--LPSGLQELSVSDN-QLASLP--T--LPSELYKLWAYNNRLTSL--P---A-LPSGLKELIVSGNR-LTS--L 397 (788)
T ss_pred ccc--c--cccccceEecCCC-ccCCCC--C--CCcccceehhhccccccC--c---c-cccccceEEecCCc-ccC--C
Confidence 211 1 2247889999884 444321 1 235788888888876631 1 1 24578999998853 441 1
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
... .++|+.|+++++ .++. +. ....+|+.|++++| .++... ..+. .+++|+.|++++|
T Consensus 398 P~l-----~s~L~~LdLS~N-~Lss--IP---~l~~~L~~L~Ls~N-qLt~LP-~sl~---------~L~~L~~LdLs~N 455 (788)
T PRK15387 398 PVL-----PSELKELMVSGN-RLTS--LP---MLPSGLLSLSVYRN-QLTRLP-ESLI---------HLSSETTVNLEGN 455 (788)
T ss_pred CCc-----ccCCCEEEccCC-cCCC--CC---cchhhhhhhhhccC-cccccC-hHHh---------hccCCCeEECCCC
Confidence 111 168999999984 5552 11 11346888999888 565211 1222 6788999999999
Q ss_pred CCCCHHHHHHh
Q 011317 387 GGITQLAFRWL 397 (488)
Q Consensus 387 ~~i~~~~~~~l 397 (488)
+ ++...+..+
T Consensus 456 ~-Ls~~~~~~L 465 (788)
T PRK15387 456 P-LSERTLQAL 465 (788)
T ss_pred C-CCchHHHHH
Confidence 8 887666555
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=102.15 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=142.6
Q ss_pred CCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccc--cChH-HHHh-hh--cCCCccEEEccccccccc
Q 011317 68 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQ-IN--QHGKLKHLSLIRSQEFLI 141 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~-~l~~-l~--~~~~L~~L~l~~~~~~~~ 141 (488)
-++...++.........++.+.+ ..|+++.+.+......+.... +... -+.. +. .-.+|++|++++
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G------ 131 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG------ 131 (699)
T ss_pred heeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc------
Confidence 36777788777777777776653 339999988754332221111 1100 1111 11 346899999964
Q ss_pred ccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 011317 142 TYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 221 (488)
Q Consensus 142 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 221 (488)
...+...+...++..+|+|++|.+++ ..+....+..++.++|+|..|+++++. +++. .-.+.+++|+.|.+.+
T Consensus 132 --~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 132 --SELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred --cchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhccC
Confidence 44556667777888899999999998 566666688888899999999999854 4433 2344677888888887
Q ss_pred CCCCCHHHHHHhhCCCCcCEEeccCCCCCChH-----HHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecC
Q 011317 222 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDE-----ALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR 296 (488)
Q Consensus 222 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~ 296 (488)
-.......+..+..+++|+.||+|........ .++.-..+|+|+.|+.+++.+....+..+.. .-|+|+.+.+-
T Consensus 205 Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~~ 283 (699)
T KOG3665|consen 205 LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAAL 283 (699)
T ss_pred CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhhh
Confidence 54444456667778999999999875443333 1122236889999999998888887777766 56666666544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-09 Score=96.15 Aligned_cols=259 Identities=15% Similarity=0.151 Sum_probs=129.5
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|+.|+|+.|.|......++. .+++|..|-+.++. .|++..-..|+.+..|+.|.+..++ +.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~N--------kI~~l~k~~F~gL~slqrLllNan~------i~ 153 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNN--------KITDLPKGAFGGLSSLQRLLLNANH------IN 153 (498)
T ss_pred chhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCC--------chhhhhhhHhhhHHHHHHHhcChhh------hc
Confidence 367888888887777766555553 67777777777642 3666555566677777777775432 33
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+-.. ....+++|..|.+.+ +.+... ....+..+..++.+.+..+..+.+=.+....... .-.....++..-.
T Consensus 154 Cir~~----al~dL~~l~lLslyD-n~~q~i-~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~-a~~~ietsgarc~ 226 (498)
T KOG4237|consen 154 CIRQD----ALRDLPSLSLLSLYD-NKIQSI-CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL-AMNPIETSGARCV 226 (498)
T ss_pred chhHH----HHHHhhhcchhcccc-hhhhhh-ccccccchhccchHhhhcCccccccccchhhhHH-hhchhhcccceec
Confidence 33222 234466777777766 232211 1212344566777766655422211111000000 0000001110000
Q ss_pred CHHHHHH--hh------CCCCcCEE--ec-cCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEe
Q 011317 226 TNHAIKS--LA------SNTGIKVL--DL-RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLS 294 (488)
Q Consensus 226 ~~~~~~~--l~------~~~~L~~L--~l-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~ 294 (488)
....+.. +. ...+++.+ .+ +.|.-...-....+..+++|++|++++|.++...-..+.. ...++.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~--~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG--AAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc--hhhhhhhh
Confidence 0000000 00 01112222 11 1221222223345667888888888888776655554444 67788888
Q ss_pred cCCCCCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCH
Q 011317 295 LRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 357 (488)
Q Consensus 295 l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 357 (488)
+..+. +. ...+..+ ..|++|+|++ ++|+--...++. .+.+|.+|++-+|+.--+
T Consensus 305 L~~N~-l~~v~~~~f~~l------s~L~tL~L~~-N~it~~~~~aF~-~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 305 LTRNK-LEFVSSGMFQGL------SGLKTLSLYD-NQITTVAPGAFQ-TLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cCcch-HHHHHHHhhhcc------ccceeeeecC-CeeEEEeccccc-ccceeeeeehccCcccCc
Confidence 87642 33 2222222 6788888888 566633222222 466788888876654333
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-07 Score=82.11 Aligned_cols=228 Identities=18% Similarity=0.109 Sum_probs=138.7
Q ss_pred CCEEEEcCCCCCC-HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHh-hCCCCc
Q 011317 162 MESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGI 239 (488)
Q Consensus 162 L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L 239 (488)
++-|.+.+| .+. ......+...++.++.+++.++..-....+..+..++|.|+.|+++. +.+... +..+ .+..+|
T Consensus 47 ~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~-I~~lp~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSD-IKSLPLPLKNL 123 (418)
T ss_pred hhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCc-cccCcccccce
Confidence 455666665 343 33355566678899999999887666778888999999999999987 444322 3333 367799
Q ss_pred CEEeccCCCCCChHHHHh-hcCCCCccEEEeCCCcc-----chhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 240 KVLDLRDCKNLGDEALRA-ISSLPQLKILLLDGSDI-----SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~i-----~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
+.|.+.|. .+....... +..+|.++.|.++.|++ .+..... ..+.+++|++.+|....-.....+.+..
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 99999884 555554443 34788888888887732 2222221 2346777777776533333333333323
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
|++..+.+..|+ +.+..-..-....|.+-.|+++.+ ++++. ++.++. .++.|.-|.+++++ +.+.
T Consensus 199 --pnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln---------~f~~l~dlRv~~~P-l~d~ 264 (418)
T KOG2982|consen 199 --PNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALN---------GFPQLVDLRVSENP-LSDP 264 (418)
T ss_pred --ccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHc---------CCchhheeeccCCc-cccc
Confidence 788888887764 222222222224666777777776 55443 444554 67888888888877 4442
Q ss_pred HH----HHhhccCCCCccEEEec
Q 011317 393 AF----RWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 393 ~~----~~l~~~~~~~L~~L~l~ 411 (488)
-- .++.-+.+++++.|+=+
T Consensus 265 l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 265 LRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCcceEEEEeeccceEEecCc
Confidence 11 12222346666666544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-08 Score=92.50 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|++++ +.++...-.++. ....+++|.+..| ++....-. +.. .+.+|+.|++++|+ |+-....
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aFe-~~a~l~eL~L~~N-~l~~v~~~-~f~--------~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAFE-GAAELQELYLTRN-KLEFVSSG-MFQ--------GLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCC-Cccchhhhhhhc-chhhhhhhhcCcc-hHHHHHHH-hhh--------ccccceeeeecCCe-eEEEecc
Confidence 6666666666 455422222221 3455666666665 33221111 111 45566666666666 5554444
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.|.. ..+|..|.+-+++
T Consensus 341 aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cceeeeeehccCc
Confidence 4443 4566666665554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-07 Score=92.95 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCcc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 291 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~ 291 (488)
++|+.|+++++ .+...+. . ..++|+.|+++++ .+..... .-.++|+.|++++|.++.... . -+++|+
T Consensus 283 ~sL~~L~Ls~N-~Lt~LP~-~--lp~sL~~L~Ls~N-~Lt~LP~---~l~~sL~~L~Ls~N~Lt~LP~-~----l~~sL~ 349 (754)
T PRK15370 283 EELRYLSVYDN-SIRTLPA-H--LPSGITHLNVQSN-SLTALPE---TLPPGLKTLEAGENALTSLPA-S----LPPELQ 349 (754)
T ss_pred CCCcEEECCCC-ccccCcc-c--chhhHHHHHhcCC-ccccCCc---cccccceeccccCCccccCCh-h----hcCccc
Confidence 35666666653 3322110 0 1234566666653 2322111 012466677776665543211 0 135677
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHH--HHHHHHccccc
Q 011317 292 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT--SVIALASMLVD 369 (488)
Q Consensus 292 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~ 369 (488)
.|++++|. ++.-. ..+. ++|++|++++| .++.-. ..+. ++|+.|++++| .++.. .+..+..
T Consensus 350 ~L~Ls~N~-L~~LP-~~lp-----~~L~~LdLs~N-~Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~---- 412 (754)
T PRK15370 350 VLDVSKNQ-ITVLP-ETLP-----PTITTLDVSRN-ALTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRG---- 412 (754)
T ss_pred EEECCCCC-CCcCC-hhhc-----CCcCEEECCCC-cCCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhh----
Confidence 77777653 33100 0111 56777777774 443110 0111 24666777766 44321 2233332
Q ss_pred CCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 370 DDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
.++++..|++.+|+ ++...+..+
T Consensus 413 ----~~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 413 ----EGPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred ----cCCCccEEEeeCCC-ccHHHHHHH
Confidence 45667777777776 665555544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-07 Score=82.53 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=110.7
Q ss_pred HHHHHHhCCCCCEEEEcCCCCCCH-HHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHH
Q 011317 152 ILLMADKCASMESICLGGFCRVTD-TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAI 230 (488)
Q Consensus 152 l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 230 (488)
+..+...++.++.|+|.+ +.+++ ..+..+++++|.|+.|+++.+.--+ .+..+.....+|+.|-+.+. .++-...
T Consensus 63 ~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s--~I~~lp~p~~nl~~lVLNgT-~L~w~~~ 138 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSS--DIKSLPLPLKNLRVLVLNGT-GLSWTQS 138 (418)
T ss_pred HHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCC--ccccCcccccceEEEEEcCC-CCChhhh
Confidence 445666788888888888 56664 3467778888999999988665321 12222223458888888874 4432222
Q ss_pred -HHhhCCCCcCEEeccCCCCCChHHHH--hhc-CCCCccEEEeCCCccch-hHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 231 -KSLASNTGIKVLDLRDCKNLGDEALR--AIS-SLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 231 -~~l~~~~~L~~L~l~~~~~~~~~~~~--~l~-~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
..+..+|.++.|+++.+ +....... ... --+.+++|...+|.... .....+.. .+|++..+.+..|+ +.+..
T Consensus 139 ~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred hhhhhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-ccchh
Confidence 22446788888888764 11111110 011 22456666666663321 11222333 57888888887775 33222
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
-..-. -++|.+..|.++. +++. ..++.++. .++.|+.|.+..++
T Consensus 216 ~ek~s--e~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 216 SEKGS--EPFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred hcccC--CCCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCc
Confidence 11111 1226777778877 4555 55666666 48888888888885
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-08 Score=91.46 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=26.3
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+.+|..|++.+|. +... ...+. .|.+|++|.++|++
T Consensus 503 nm~nL~tLDL~nNd-lq~I-Pp~Lg--nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-LQQI-PPILG--NMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCCc-hhhC-Chhhc--cccceeEEEecCCc
Confidence 45678899998887 3321 22333 48999999999997
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-08 Score=82.87 Aligned_cols=127 Identities=25% Similarity=0.296 Sum_probs=31.9
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR 341 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 341 (488)
.+++|+|.++.|+.. ..+.. .+.+|+.|++++|. ++ -+++..+ ++|++|++++ +.++.-+- .+...+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~-~l~~L~~L~Ls~N~-I~~l~~l~~L------~~L~~L~L~~-N~I~~i~~-~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGA-TLDKLEVLDLSNNQ-ITKLEGLPGL------PRLKTLDLSN-NRISSISE-GLDKNL 87 (175)
T ss_dssp ------------------S--T-T-TT--EEE-TTS---S--TT----------TT--EEE--S-S---S-CH-HHHHH-
T ss_pred ccccccccccccccc--cchhh-hhcCCCEEECCCCC-CccccCccCh------hhhhhcccCC-CCCCcccc-chHHhC
Confidence 345555555544321 11221 24455555555543 22 2223333 5566666665 44443211 111235
Q ss_pred CCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecC
Q 011317 342 VPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTG 412 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~ 412 (488)
|+|+.|.+++| ++.+. .+..+. .+|+|+.|++.+|+ ++. ...+.+.-..+|+|+.|+-..
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~---------~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLS---------SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGG---------G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCC-cCCChHHhHHHH---------cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 66666666665 33321 112222 45666666666666 332 112221111366666665443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.6e-08 Score=87.85 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=64.5
Q ss_pred HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCC--
Q 011317 255 LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLS-- 330 (488)
Q Consensus 255 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~-- 330 (488)
...++.+++|..|++++|-+.+-... ++. +..|+.|+++.+. .. +..+..+ ..++.+-.++ +++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~--lv~Lq~LnlS~Nr-Fr~lP~~~y~l------q~lEtllas~-nqi~~v 496 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEE-MGS--LVRLQTLNLSFNR-FRMLPECLYEL------QTLETLLASN-NQIGSV 496 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchh-hhh--hhhhheecccccc-cccchHHHhhH------HHHHHHHhcc-cccccc
Confidence 34566788888888888755543333 222 5668888888752 22 3333333 3344444443 3433
Q ss_pred -HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCC
Q 011317 331 -DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 390 (488)
Q Consensus 331 -~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 390 (488)
+.++. ++.+|..|++.+| .+. .+.-... ++.+|++|.+++|+ +.
T Consensus 497 d~~~l~----nm~nL~tLDL~nN-dlq--~IPp~Lg--------nmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 497 DPSGLK----NMRNLTTLDLQNN-DLQ--QIPPILG--------NMTNLRHLELDGNP-FR 541 (565)
T ss_pred ChHHhh----hhhhcceeccCCC-chh--hCChhhc--------cccceeEEEecCCc-cC
Confidence 44444 5778888888877 322 1222222 78889999999888 54
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.6e-07 Score=74.75 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=80.8
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHH
Q 011317 317 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 396 (488)
Q Consensus 317 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 396 (488)
.++.++-+++ .|..+|+..+. .++.++.|.+.+|..+.|.++..+.. ..++|+.|+|++|+.||+.++..
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHH
Confidence 5677787774 77778887776 48888888898998899999988887 67889999999999999998888
Q ss_pred hhccCCCCccEEEecCCC---CHH-HHHHHHhhCCCceee
Q 011317 397 LKKPYFPRLRWLGVTGSV---NRD-ILDALARSRPFLNVA 432 (488)
Q Consensus 397 l~~~~~~~L~~L~l~~~~---~~~-~~~~~~~~~~~l~~~ 432 (488)
+.. +++|+.|.+.+-+ ..+ ....+....|+..+-
T Consensus 172 L~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 172 LLK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHH--hhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 876 8899998888765 222 334456677866654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=90.40 Aligned_cols=247 Identities=15% Similarity=0.151 Sum_probs=141.3
Q ss_pred CCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCC
Q 011317 93 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 172 (488)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 172 (488)
.+...|+++++. ++... ..+ .++|+.|+++++. ...+... .+++|+.|+++++ .
T Consensus 178 ~~~~~L~L~~~~---------LtsLP-~~I--p~~L~~L~Ls~N~------LtsLP~~-------l~~nL~~L~Ls~N-~ 231 (754)
T PRK15370 178 NNKTELRLKILG---------LTTIP-ACI--PEQITTLILDNNE------LKSLPEN-------LQGNIKTLYANSN-Q 231 (754)
T ss_pred cCceEEEeCCCC---------cCcCC-ccc--ccCCcEEEecCCC------CCcCChh-------hccCCCEEECCCC-c
Confidence 457778887752 33210 011 2468888886432 2222211 1357888888874 5
Q ss_pred CCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCCh
Q 011317 173 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD 252 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (488)
++.. ...+ .++|+.|++++|. +...+.. + ..+|+.|++++ +.+...+- . -+++|+.|+++++ .++.
T Consensus 232 LtsL-P~~l---~~~L~~L~Ls~N~-L~~LP~~-l---~s~L~~L~Ls~-N~L~~LP~-~--l~~sL~~L~Ls~N-~Lt~ 297 (754)
T PRK15370 232 LTSI-PATL---PDTIQEMELSINR-ITELPER-L---PSALQSLDLFH-NKISCLPE-N--LPEELRYLSVYDN-SIRT 297 (754)
T ss_pred cccC-Chhh---hccccEEECcCCc-cCcCChh-H---hCCCCEEECcC-CccCcccc-c--cCCCCcEEECCCC-cccc
Confidence 5422 1111 2478888888765 3322111 1 24788999886 45543211 1 2358999999885 4442
Q ss_pred HHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHH
Q 011317 253 EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 332 (488)
Q Consensus 253 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 332 (488)
... .+ .++|+.|++++|.++..... ..++|+.|.+++|. ++.-. ..+ .++|+.|+++++ +++..
T Consensus 298 LP~-~l--p~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP-~~l-----~~sL~~L~Ls~N-~L~~L 361 (754)
T PRK15370 298 LPA-HL--PSGITHLNVQSNSLTALPET-----LPPGLKTLEAGENA-LTSLP-ASL-----PPELQVLDVSKN-QITVL 361 (754)
T ss_pred Ccc-cc--hhhHHHHHhcCCccccCCcc-----ccccceeccccCCc-cccCC-hhh-----cCcccEEECCCC-CCCcC
Confidence 211 11 24688888888877632211 24678999998864 43210 011 168999999985 55521
Q ss_pred HHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH--HHHHhhccCCCCccEEEe
Q 011317 333 GILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL--AFRWLKKPYFPRLRWLGV 410 (488)
Q Consensus 333 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~~L~~L~l 410 (488)
. .. -.++|+.|+|++| .++... ..+. ++|+.|++++|. ++.. .+..+.. .+|++..|++
T Consensus 362 P-~~---lp~~L~~LdLs~N-~Lt~LP-~~l~-----------~sL~~LdLs~N~-L~~LP~sl~~~~~-~~~~l~~L~L 422 (754)
T PRK15370 362 P-ET---LPPTITTLDVSRN-ALTNLP-ENLP-----------AALQIMQASRNN-LVRLPESLPHFRG-EGPQPTRIIV 422 (754)
T ss_pred C-hh---hcCCcCEEECCCC-cCCCCC-HhHH-----------HHHHHHhhccCC-cccCchhHHHHhh-cCCCccEEEe
Confidence 1 11 1368999999998 555211 1111 258888999887 6542 2334433 4688999999
Q ss_pred cCCC
Q 011317 411 TGSV 414 (488)
Q Consensus 411 ~~~~ 414 (488)
.+|+
T Consensus 423 ~~Np 426 (754)
T PRK15370 423 EYNP 426 (754)
T ss_pred eCCC
Confidence 9887
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-07 Score=80.76 Aligned_cols=142 Identities=24% Similarity=0.225 Sum_probs=89.8
Q ss_pred CCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc
Q 011317 261 LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340 (488)
Q Consensus 261 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 340 (488)
...|+++++++|.|+...-. +- -.|.++.|+++++.-..-..+..+ ++|+.|++++ +.++. +..+-..
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vK--L~Pkir~L~lS~N~i~~v~nLa~L------~~L~~LDLS~-N~Ls~--~~Gwh~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VK--LAPKLRRLILSQNRIRTVQNLAEL------PQLQLLDLSG-NLLAE--CVGWHLK 350 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hh--hccceeEEeccccceeeehhhhhc------ccceEeeccc-chhHh--hhhhHhh
Confidence 45688889998876643221 11 267899999988543334445555 8899999998 45542 1112225
Q ss_pred CCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecCCCC---
Q 011317 341 RVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSVN--- 415 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~~--- 415 (488)
+.+++.|.+++| .+.+. |+. .+-+|..|++++|+ |.. ..+..+.+ +|.|+++.+.+||.
T Consensus 351 LGNIKtL~La~N-~iE~LSGL~------------KLYSLvnLDl~~N~-Ie~ldeV~~IG~--LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 351 LGNIKTLKLAQN-KIETLSGLR------------KLYSLVNLDLSSNQ-IEELDEVNHIGN--LPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcCEeeeehhhh-hHhhhhhhH------------hhhhheeccccccc-hhhHHHhccccc--ccHHHHHhhcCCCcccc
Confidence 778999999888 43322 233 34458899999988 443 44555554 89999999999973
Q ss_pred ----HHHHHHHHhhCCCce
Q 011317 416 ----RDILDALARSRPFLN 430 (488)
Q Consensus 416 ----~~~~~~~~~~~~~l~ 430 (488)
.+.+..+..+..-+.
T Consensus 415 vdYRTKVLa~FGERaSE~~ 433 (490)
T KOG1259|consen 415 VDYRTKVLARFGERASEIS 433 (490)
T ss_pred chHHHHHHHHHhhhhhhee
Confidence 334444554444333
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-06 Score=73.47 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
.++++|+|+++ .++. +..+...+.+|+.|+++++....-.+ ...+++|+.|++++ +.+...+......+|+|
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 34555555552 3332 12222234556666666543211111 12345666666666 34433211111246777
Q ss_pred CEEeccCCCCCCh-HHHHhhcCCCCccEEEeCCCccchhH-HH-HHHhhcCCCccEEecCC
Q 011317 240 KVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVG-VS-YLRLTVITSLVKLSLRG 297 (488)
Q Consensus 240 ~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~-~~-~l~~~~~~~L~~L~l~~ 297 (488)
++|.++++ .+.+ ..+..+..+|+|+.|++.+|.+.+.. .. .+.. .+|+|+.|+-..
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~-~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIY-KLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHH-H-TT-SEETTEE
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHH-HcChhheeCCEE
Confidence 77777764 3332 23455667788888888887665432 12 2222 478888887654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-06 Score=71.54 Aligned_cols=90 Identities=29% Similarity=0.449 Sum_probs=73.2
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCC
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 342 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 342 (488)
.++.++-+++.|...++..+.. ++.++.|.+.+|..+.+.++..+.. ..++|+.|++++|+.||+.++..+.+ ++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHH-hh
Confidence 4577777788888888888877 8899999999999898888888866 33889999999999999988888875 88
Q ss_pred CCCeEeecCCCCCCH
Q 011317 343 PISELRVRQCPLIGD 357 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~ 357 (488)
+|+.|.+.+-+.+..
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 888888877654443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-06 Score=91.02 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=54.5
Q ss_pred CCCCcEEEeecCc--cChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
+++|++|-+..+. +.. ....+...+|.|++|+|++|... .. -...++.+-+||+|+++.+
T Consensus 544 ~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l--------~~-LP~~I~~Li~LryL~L~~t-------- 605 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSL--------SK-LPSSIGELVHLRYLDLSDT-------- 605 (889)
T ss_pred CCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCcc--------Cc-CChHHhhhhhhhcccccCC--------
Confidence 4567777766543 222 12222346777777777776321 11 1223556667777777532
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
.+. .++.-..+++.|.+|++........ +..+...+++|++|.+...
T Consensus 606 -~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 606 -GIS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred -Ccc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 222 1222234456677777765332221 1333444677777777654
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-06 Score=75.88 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=86.9
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
.+.|+.++++++ .++. .-....-.|.++.|+++.|++...+- +.. +++|+.|+++++.--..+++..- +
T Consensus 283 Wq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~n--La~--L~~L~~LDLS~N~Ls~~~Gwh~K-----L 351 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQN--LAE--LPQLQLLDLSGNLLAECVGWHLK-----L 351 (490)
T ss_pred Hhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehh--hhh--cccceEeecccchhHhhhhhHhh-----h
Confidence 567888999884 3332 22233457899999999998775443 333 88999999998542223444332 2
Q ss_pred CCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCC
Q 011317 316 LQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 390 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 390 (488)
.++++|.+++ +.+. -.|+. .+-+|..|++++| ++... .+..+. ++|.|+.+.+.+|+ +.
T Consensus 352 GNIKtL~La~-N~iE~LSGL~----KLYSLvnLDl~~N-~Ie~ldeV~~IG---------~LPCLE~l~L~~NP-l~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQ-NKIETLSGLR----KLYSLVNLDLSSN-QIEELDEVNHIG---------NLPCLETLRLTGNP-LA 412 (490)
T ss_pred cCEeeeehhh-hhHhhhhhhH----hhhhheecccccc-chhhHHHhcccc---------cccHHHHHhhcCCC-cc
Confidence 7899999998 4443 23444 3567999999998 55432 333444 78999999999998 54
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.6e-06 Score=85.76 Aligned_cols=232 Identities=16% Similarity=0.152 Sum_probs=120.7
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|++|-+......-......++..+|.|+.|++++|...... +.....+-+|++|+++++ .+...+. .+..+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t-~I~~LP~-~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDT-GISHLPS-GLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccCC-Cccccch-HHHHHH
Confidence 467788887776322111113334567889999999876654332 233445568888888884 5553332 455777
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc--cchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
.|.+|++..+...... ......+++|++|.+.... .+...+..+. .+.+|+.+.+..+.. ..+..+. ..
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~---~~~e~l~---~~ 689 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSV---LLLEDLL---GM 689 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchh---HhHhhhh---hh
Confidence 8888888765433222 2233358888888887653 2222223332 255566555544321 1111110 00
Q ss_pred CCee----EEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCC-CCCccEEeccCCCCCC
Q 011317 316 LQLQ----ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGIT 390 (488)
Q Consensus 316 ~~L~----~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~~~~i~ 390 (488)
++|. .+.+.+|...+ .... ...+.+|+.|.|.+| .+.+..+........ .. ++++..+.+.+|....
T Consensus 690 ~~L~~~~~~l~~~~~~~~~--~~~~-~~~l~~L~~L~i~~~-~~~e~~~~~~~~~~~----~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKRT--LISS-LGSLGNLEELSILDC-GISEIVIEWEESLIV----LLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred HHHHHHhHhhhhcccccce--eecc-cccccCcceEEEEcC-CCchhhcccccccch----hhhHHHHHHHHhhcccccc
Confidence 2222 33332221111 1111 124678888888888 443322211110000 01 4566677777776544
Q ss_pred HHHHHHhhccCCCCccEEEecCCC
Q 011317 391 QLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 391 ~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+..... ..|+|+.|.+.+|.
T Consensus 762 ~l~~~~----f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 762 DLTWLL----FAPHLTSLSLVSCR 781 (889)
T ss_pred ccchhh----ccCcccEEEEeccc
Confidence 433322 36788888888886
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=3.1e-05 Score=52.86 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=29.7
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
|+|++|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN--LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTT--STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC--CCCCCEEeCcCC
Confidence 34555555553 444444445555566666666655544333322222 555555555553
|
... |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=1.1e-06 Score=70.84 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 161 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
+++.|.+++ ++++.. .+.+ ..+.+|+.|++.++
T Consensus 34 ~ITrLtLSH-NKl~~v-ppni-a~l~nlevln~~nn 66 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVV-PPNI-AELKNLEVLNLSNN 66 (264)
T ss_pred hhhhhhccc-Cceeec-CCcH-HHhhhhhhhhcccc
Confidence 344455555 344332 1221 23455666665543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=3.1e-05 Score=52.88 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=46.9
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCcc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 274 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 274 (488)
|+|++|+++++ .+...+...+..+++|++|+++++ .+.......+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57788888875 555444445668899999999974 67777777788999999999998864
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=1.7e-05 Score=78.41 Aligned_cols=104 Identities=24% Similarity=0.266 Sum_probs=47.4
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHh-cCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISA-TSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
++.|+.|+|+. +++.+.. .+..|++|++|+|+.+.- .. +..+.. .| +|+.|.+.+ +.+. .+..+.++.
T Consensus 186 l~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L-~~--vp~l~~~gc-~L~~L~lrn-N~l~--tL~gie~Lk 254 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCL-RH--VPQLSMVGC-KLQLLNLRN-NALT--TLRGIENLK 254 (1096)
T ss_pred HHHhhhhccch-hhhhhhH---HHHhcccccccccccchh-cc--ccccchhhh-hheeeeecc-cHHH--hhhhHHhhh
Confidence 45566666666 3544332 234566666666665431 10 001111 22 355666655 2221 233344556
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 273 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 273 (488)
+|+.|+++++--.....+..+..+..|+.|.|.||.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 666666655311112223333344455555665553
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=71.76 Aligned_cols=314 Identities=22% Similarity=0.262 Sum_probs=157.9
Q ss_pred CcEEEeecCccChhHHHHHHh---cCCCccEEeccCCCCCCCccccccChHHHHhhh----cC-CCccEEEccccccccc
Q 011317 70 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 141 (488)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 141 (488)
+..|.|..+.+.+.....+.+ ..+.|..|++++|. +.+.+...+. .. ..|+.|.+..|
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~---------l~~~g~~~l~~~l~~~~~~l~~L~l~~c----- 154 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN---------LGDEGARLLCEGLRLPQCLLQTLELVSC----- 154 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC---------CccHhHHHHHhhcccchHHHHHHHhhcc-----
Confidence 777777777777766666655 56788888888874 6666666554 11 34555665422
Q ss_pred ccccccChHHH---HHHHHhCCCCCEEEEcCCCCCCHHHHHHHH---H----hCCCCceEEecCCCCCCHHHHHH---HH
Q 011317 142 TYFRRVNDLGI---LLMADKCASMESICLGGFCRVTDTGFKTIL---H----SCSNLYKLRVSHGTQLTDLVFHD---IS 208 (488)
Q Consensus 142 ~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~----~~~~L~~L~l~~~~~~~~~~~~~---~~ 208 (488)
.+++.+. .........++.++++.+ .+...+...+. . ...++++|++++|.. +...... ..
T Consensus 155 ----~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~-t~~~c~~l~~~l 228 (478)
T KOG4308|consen 155 ----SLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGV-TSSSCALLDEVL 228 (478)
T ss_pred ----cccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCc-ChHHHHHHHHHH
Confidence 2222222 222223666777777764 33222222221 2 244677788777653 3322222 22
Q ss_pred hcCCC-CCEEEecCCCCCCHHHHHHhh----CC-CCcCEEeccCCCCCChHHHHhh----cCCCCccEEEeCCCccchhH
Q 011317 209 ATSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVG 278 (488)
Q Consensus 209 ~~~~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~i~~~~ 278 (488)
...+. +.++++.. +.+.+.++..+. .+ +.+++++++.+ .+++.+...+ ..++.++++.++.+.+.+.+
T Consensus 229 ~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 229 ASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 23333 55566666 466666555443 23 56677777775 4544444333 35667788888877776655
Q ss_pred HHHHHh--hcCCCccEEecCCCCCCCHHHHHHHhccCCCCC-eeEEecCCCCCCCHHHHHHHHh----cCCCCCeEeecC
Q 011317 279 VSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQ 351 (488)
Q Consensus 279 ~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~ 351 (488)
...+.. .....+..+.+.++...+......+...-.... +....+++ ....+++...+.. .-+.+..+.+..
T Consensus 307 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (478)
T KOG4308|consen 307 VELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNS 385 (478)
T ss_pred HHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhc
Confidence 543332 123445555555444333221111110000011 22222333 3344433332211 122355566655
Q ss_pred CCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011317 352 CPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 414 (488)
Q Consensus 352 ~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 414 (488)
+ .+.+.+...++.... .++.++.++++.+. ..+.+...+.. ... .++.+.++.++
T Consensus 386 ~-~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 386 Q-VIEGRGALRLAAQLA-----SNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred c-ccccHHHHHhhhhhh-----hcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 5 344444444433222 67778888888776 33332222211 134 77777777665
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=2.7e-05 Score=76.95 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHH
Q 011317 159 CASMESICLGGFCRVTDTGFKTI 181 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~ 181 (488)
+.+|+.|.+.+|+--+..++..+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHH
Confidence 67888888888743334444443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.03 E-value=1.5e-05 Score=64.54 Aligned_cols=149 Identities=23% Similarity=0.235 Sum_probs=74.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+.+++.|.++.+.. +..+ .. ...+.+|+.|++.+ +.+.+.+. .++.+++|+.|.+.-+ .+ ......++.+|.|
T Consensus 32 ~s~ITrLtLSHNKl-~~vp-pn-ia~l~nlevln~~n-nqie~lp~-~issl~klr~lnvgmn-rl-~~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL-TVVP-PN-IAELKNLEVLNLSN-NQIEELPT-SISSLPKLRILNVGMN-RL-NILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCce-eecC-Cc-HHHhhhhhhhhccc-chhhhcCh-hhhhchhhhheecchh-hh-hcCccccCCCchh
Confidence 34555666665432 1110 01 12334777777776 44444332 4557778888877642 22 1233456677788
Q ss_pred cEEEeCCCccchhHHHH-HHhhcCCCccEEecCCCCC-CCHHHHHHHhccCCCCCeeEEecCCCCCCC-HHHHHHHHhcC
Q 011317 265 KILLLDGSDISDVGVSY-LRLTVITSLVKLSLRGCKR-LTDKCISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCR 341 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~-l~~~~~~~L~~L~l~~~~~-l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~ 341 (488)
+.|+++++++.+..+.. +.. +..|+.|+++.+.. +-+..+..+ ++|+.|.+....-++ +..+. .+
T Consensus 105 evldltynnl~e~~lpgnff~--m~tlralyl~dndfe~lp~dvg~l------t~lqil~lrdndll~lpkeig----~l 172 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFY--MTTLRALYLGDNDFEILPPDVGKL------TNLQILSLRDNDLLSLPKEIG----DL 172 (264)
T ss_pred hhhhccccccccccCCcchhH--HHHHHHHHhcCCCcccCChhhhhh------cceeEEeeccCchhhCcHHHH----HH
Confidence 88888777666554421 111 34555566655321 112333333 556666665522222 22222 24
Q ss_pred CCCCeEeecCC
Q 011317 342 VPISELRVRQC 352 (488)
Q Consensus 342 ~~L~~L~l~~~ 352 (488)
+.|++|+|.++
T Consensus 173 t~lrelhiqgn 183 (264)
T KOG0617|consen 173 TRLRELHIQGN 183 (264)
T ss_pred HHHHHHhcccc
Confidence 45666666555
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=61.79 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
|++++.|++++| .+... + ...++|++|.+++|..++..+- . ..++|++|.+++|..+.. -.++
T Consensus 51 ~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs~L~s-------LP~s 113 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCPEISG-------LPES 113 (426)
T ss_pred hcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCcccccc-------cccc
Confidence 678888888886 44332 1 1223688888877765432221 0 124677777777654431 1345
Q ss_pred cCEEeccC
Q 011317 239 IKVLDLRD 246 (488)
Q Consensus 239 L~~L~l~~ 246 (488)
|+.|++.+
T Consensus 114 Le~L~L~~ 121 (426)
T PRK15386 114 VRSLEIKG 121 (426)
T ss_pred cceEEeCC
Confidence 66666653
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00016 Score=71.12 Aligned_cols=218 Identities=22% Similarity=0.230 Sum_probs=114.5
Q ss_pred CCEEEEcCCCCCCHHHHHHHHH---hCCCCceEEecCCCCCCHHHHHHHHhcC----CCCCEEEecCCCCCCHHHHHH--
Q 011317 162 MESICLGGFCRVTDTGFKTILH---SCSNLYKLRVSHGTQLTDLVFHDISATS----LSLTHVCLRWCNLLTNHAIKS-- 232 (488)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-- 232 (488)
+..|.+.+| .+.+.+...+.+ ..+.|..|+++++. +.+.+...+.... ..|+.|.+..| .+...+...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 667777775 555444444444 34678888888765 4466655554432 34566666665 233333222
Q ss_pred --hhCCCCcCEEeccCCCCCChHHHHh----hc----CCCCccEEEeCCCccchhHHHHHHh--hcCCC-ccEEecCCCC
Q 011317 233 --LASNTGIKVLDLRDCKNLGDEALRA----IS----SLPQLKILLLDGSDISDVGVSYLRL--TVITS-LVKLSLRGCK 299 (488)
Q Consensus 233 --l~~~~~L~~L~l~~~~~~~~~~~~~----l~----~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~-L~~L~l~~~~ 299 (488)
+...+.++.++++.+... ..+... +. ...++++|++.+|.++......+.. ...+. +..|++.. +
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 335667777777764322 222211 11 2456777777777666555543322 12233 45566655 3
Q ss_pred CCCHHHHHHHhccCCC--CCeeEEecCCCCCCCHHHHHH---HHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCC
Q 011317 300 RLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILT---LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 374 (488)
Q Consensus 300 ~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 374 (488)
.+.+.++..+...... +.++.+++..| .+++.+... ....|+.++.+.+..+ .+++.+...+..... .
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~-----~ 316 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALE-----R 316 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhh-----h
Confidence 4666655554432211 35567777764 455433332 2334566777777666 666666555544333 3
Q ss_pred CCCccEEeccCCCCCCH
Q 011317 375 GSSIRLLDLYNCGGITQ 391 (488)
Q Consensus 375 ~~~L~~L~l~~~~~i~~ 391 (488)
...+..+-+.++...+.
T Consensus 317 ~~~~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTR 333 (478)
T ss_pred cccchhhhccccCccch
Confidence 44455555555554444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00037 Score=60.84 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=34.5
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCH-HHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD-TSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
|+|++|.++........++..++..+|+|++|++++| ++.+ ..+..+. .+++|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~---------~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK---------ELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh---------hhcchhhhhcccCC
Confidence 6777777765322223445555556677777777776 4443 1222222 45566666666665
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.002 Score=34.99 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=10.1
Q ss_pred CCCCeEeecCCCCCCHHHHHHH
Q 011317 342 VPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l 363 (488)
++|+.|+|++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00016 Score=63.08 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=32.0
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecCCC
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+|+.|.++.|..-...++..++. .+|+|++|++++|+ |.+ ..+..+.. +++|+.|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e--------~~P~l~~l~ls~Nk-i~~lstl~pl~~--l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAE--------KAPNLKVLNLSGNK-IKDLSTLRPLKE--LENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhh--------hCCceeEEeecCCc-cccccccchhhh--hcchhhhhcccCC
Confidence 4566666665552222233444444 55666666666665 443 22333332 5556666666664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0067 Score=62.63 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred ccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc
Q 011317 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340 (488)
Q Consensus 264 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 340 (488)
++.|+|+++.+.......+.. +++|+.|+++++. +. +..+..+ ++|+.|+|++ +.++......+. .
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~-N~lsg~iP~~l~-~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSY-NSFNGSIPESLG-Q 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCC-CCCCCCCchHHh-c
Confidence 667777777665443344444 7778888887754 32 2222222 7788888877 355533223333 5
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCC
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 389 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 389 (488)
+++|+.|++++| .++......+.. ...++..+++.+|..+
T Consensus 489 L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 489 LTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCccc
Confidence 778888888877 444333333332 2335666777766543
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0036 Score=34.00 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCCccEEeccCCCCCCHHHHHHhhc
Q 011317 375 GSSIRLLDLYNCGGITQLAFRWLKK 399 (488)
Q Consensus 375 ~~~L~~L~l~~~~~i~~~~~~~l~~ 399 (488)
|++|+.|+|++|..|++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999999999999988753
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.00096 Score=58.71 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+.+.+.|++-++.++|.. ++..+|.|++|.|+-|. |+ .+..+..|.+|++|.|.. +.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk---------Is--sL~pl~rCtrLkElYLRk---------N~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK---------IS--SLAPLQRCTRLKELYLRK---------NC 74 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc---------cc--cchhHHHHHHHHHHHHHh---------cc
Confidence 456677777777777743 34578888888888774 33 344567788888888863 23
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHH---HHHHHHHhCCCCceEEecCCCCCCHHHHH
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDT---GFKTILHSCSNLYKLRVSHGTQLTDLVFH 205 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 205 (488)
+.+..-.....++|+|+.|.|...+..... .-..++..+|+|++|+ +..++.....
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle 133 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELE 133 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHH
Confidence 333322233456888888888754333222 1234556688888886 2334444444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0083 Score=61.93 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=50.7
Q ss_pred ccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCC
Q 011317 95 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVT 174 (488)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 174 (488)
++.|+|+++. ++......++.+++|+.|+|+++. +... +......+++|+.|+|+++ .+.
T Consensus 420 v~~L~L~~n~---------L~g~ip~~i~~L~~L~~L~Ls~N~---------l~g~-iP~~~~~l~~L~~LdLs~N-~ls 479 (623)
T PLN03150 420 IDGLGLDNQG---------LRGFIPNDISKLRHLQSINLSGNS---------IRGN-IPPSLGSITSLEVLDLSYN-SFN 479 (623)
T ss_pred EEEEECCCCC---------ccccCCHHHhCCCCCCEEECCCCc---------ccCc-CChHHhCCCCCCEEECCCC-CCC
Confidence 5566666652 333233345566666666665321 1110 1112244667777777763 444
Q ss_pred HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 011317 175 DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWC 222 (488)
Q Consensus 175 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 222 (488)
.. ++..+..+++|+.|+++++......+ ..+.....++..+++.++
T Consensus 480 g~-iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 480 GS-IPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDN 525 (623)
T ss_pred CC-CchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCceEEecCC
Confidence 33 22223456777777777654221111 112222335556666653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.014 Score=55.66 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=83.2
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcC
Q 011317 209 ATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVI 287 (488)
Q Consensus 209 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~ 287 (488)
..+++++.|++++| .+...+ .-.++|+.|.+++|..+.... ..+ .++|++|.+++| .+.. -.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP----~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s---------LP 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP----VLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG---------LP 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC----CCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc---------cc
Confidence 34689999999998 554333 124579999999987753322 112 358999999988 4431 13
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 288 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 288 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
++|+.|.+... ... .+..+. ++|+.|.+.+.+......+.. .-.++|+.|.+++|..+. +...
T Consensus 112 ~sLe~L~L~~n-~~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~- 174 (426)
T PRK15386 112 ESVRSLEIKGS-ATD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK- 174 (426)
T ss_pred cccceEEeCCC-CCc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc-
Confidence 57888888642 222 122332 678888886532221111111 013689999999995432 1110
Q ss_pred ccCCCCCCCCccEEeccCCC
Q 011317 368 VDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~ 387 (488)
-..+|+.|.++.+.
T Consensus 175 ------LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 ------LPESLQSITLHIEQ 188 (426)
T ss_pred ------ccccCcEEEecccc
Confidence 12479999998753
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.015 Score=36.30 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=18.7
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
++|++|+++++ .+.+... .++++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 35566666653 4443221 2556666666666666554
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0089 Score=37.29 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.3
Q ss_pred CCCCccEEeccCCC
Q 011317 374 YGSSIRLLDLYNCG 387 (488)
Q Consensus 374 ~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++|+
T Consensus 22 ~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 22 NLPNLETLNLSNNP 35 (44)
T ss_dssp TCTTSSEEEETSSC
T ss_pred CCCCCCEEEecCCC
Confidence 34444444444443
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0027 Score=55.96 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTS 314 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~ 314 (488)
+.+.++|+..|| .+.+..+ ...+|.|+.|.|+-|.|+. +..+.. |+.|++|++..+ .+.+ +.+..+ ..
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~r--CtrLkElYLRkN-~I~sldEL~YL---kn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQR--CTRLKELYLRKN-CIESLDELEYL---KN 86 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecccccc--chhHHH--HHHHHHHHHHhc-ccccHHHHHHH---hc
Confidence 456778888887 5555433 3478899999999887764 444444 888999998874 3543 333333 23
Q ss_pred CCCeeEEecCCCCCCCHH---HHHHHHhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 315 KLQLQELDLSNLPHLSDN---GILTLATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~---~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
+|+|+.|.|...+..... --..+.+.+|+|+.|+ |..++...+..
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHH
Confidence 388899888875443322 2233455688888885 33566555544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.014 Score=56.99 Aligned_cols=170 Identities=26% Similarity=0.285 Sum_probs=78.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcC-CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCC
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATS-LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 263 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 263 (488)
.+.++.|.+.++.. ++ +....... ++|+.|++++ +.+.... ..+..+++|+.|+++++ .+.+... ..+..++
T Consensus 115 ~~~l~~L~l~~n~i-~~--i~~~~~~~~~nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~~~ 187 (394)
T COG4886 115 LTNLTSLDLDNNNI-TD--IPPLIGLLKSNLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPK-LLSNLSN 187 (394)
T ss_pred ccceeEEecCCccc-cc--Cccccccchhhcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhh-hhhhhhh
Confidence 35677777665432 11 11112223 2677777766 3443321 23446677777777664 3322221 1114566
Q ss_pred ccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCCeeEEecCCCCCCCH--HHHHHHHhc
Q 011317 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSD--NGILTLATC 340 (488)
Q Consensus 264 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~ 340 (488)
|+.|.++++.+.+..... . ....|++|.+.+...+. ...+..+ .++..+.+.+ +.+.. ..+. .
T Consensus 188 L~~L~ls~N~i~~l~~~~-~--~~~~L~~l~~~~N~~~~~~~~~~~~------~~l~~l~l~~-n~~~~~~~~~~----~ 253 (394)
T COG4886 188 LNNLDLSGNKISDLPPEI-E--LLSALEELDLSNNSIIELLSSLSNL------KNLSGLELSN-NKLEDLPESIG----N 253 (394)
T ss_pred hhheeccCCccccCchhh-h--hhhhhhhhhhcCCcceecchhhhhc------ccccccccCC-ceeeeccchhc----c
Confidence 666777766555433221 1 13346666666542121 1222222 4444444443 23222 2222 4
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+++++.|++++| .+++... +. ...+++.|+++++.
T Consensus 254 l~~l~~L~~s~n-~i~~i~~--~~---------~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLETLDLSNN-QISSISS--LG---------SLTNLRELDLSGNS 288 (394)
T ss_pred ccccceeccccc-ccccccc--cc---------ccCccCEEeccCcc
Confidence 555666666666 4433322 11 44566666666655
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.015 Score=56.80 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=6.2
Q ss_pred cCCCCCEEEecC
Q 011317 210 TSLSLTHVCLRW 221 (488)
Q Consensus 210 ~~~~L~~L~l~~ 221 (488)
.+++|+.|+++.
T Consensus 161 ~l~~L~~L~l~~ 172 (394)
T COG4886 161 NLPNLKNLDLSF 172 (394)
T ss_pred ccccccccccCC
Confidence 445555555554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.01 Score=49.89 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred CCeeEEecCCCCCCCH--HHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSD--NGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|.+|.+++ +.|+. ..+.. .+|+|+.|.+.+| .+... .+..++ .||+|++|.+-+|+ ++..
T Consensus 64 ~rL~tLll~n-NrIt~I~p~L~~---~~p~l~~L~LtnN-si~~l~dl~pLa---------~~p~L~~Ltll~Np-v~~k 128 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDPDLDT---FLPNLKTLILTNN-SIQELGDLDPLA---------SCPKLEYLTLLGNP-VEHK 128 (233)
T ss_pred cccceEEecC-Ccceeeccchhh---hccccceEEecCc-chhhhhhcchhc---------cCCccceeeecCCc-hhcc
Confidence 6777777777 56652 22322 3567777777777 33222 233333 67788888888877 4432
Q ss_pred -HHHHhhccCCCCccEEEecCCC
Q 011317 393 -AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 -~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
......-..+|+|+.|++.+..
T Consensus 129 ~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCceeEEEEecCcceEeehhhhh
Confidence 2222111236788888887664
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.032 Score=29.46 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=8.3
Q ss_pred CCCCeEeecCCCCCCHHHHHHH
Q 011317 342 VPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l 363 (488)
++|+.|+|++| .+++.++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34444444444 3444444443
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.02 Score=45.13 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=29.8
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
+.....|+..+++++ .+.+........+|.++.|++..|.+.+.... ++. ++.|+.|+++.+
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N 110 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFN 110 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccC
Confidence 334445555555552 33333222223445555566665555544433 333 555666666553
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.078 Score=27.95 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=12.1
Q ss_pred CCccEEEeCCCccchhHHHHHH
Q 011317 262 PQLKILLLDGSDISDVGVSYLR 283 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~ 283 (488)
++|++|+|++|.+++.++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5566666666666666655543
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.067 Score=45.21 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HH
Q 011317 316 LQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LA 393 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~ 393 (488)
.+...++++.. .+. ...+. .+++|..|.+++| .|+...- .+.. .+|+|..|.+.+|. |.. ..
T Consensus 42 d~~d~iDLtdN-dl~~l~~lp----~l~rL~tLll~nN-rIt~I~p-~L~~--------~~p~l~~L~LtnNs-i~~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDNLP----HLPRLHTLLLNNN-RITRIDP-DLDT--------FLPNLKTLILTNNS-IQELGD 105 (233)
T ss_pred cccceeccccc-chhhcccCC----CccccceEEecCC-cceeecc-chhh--------hccccceEEecCcc-hhhhhh
Confidence 45666777763 332 22222 5788999999888 6664321 1222 56889999999987 444 33
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011317 394 FRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+..+.. ||+|++|.+-+++
T Consensus 106 l~pLa~--~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 LDPLAS--CPKLEYLTLLGNP 124 (233)
T ss_pred cchhcc--CCccceeeecCCc
Confidence 555554 9999999999987
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.014 Score=57.35 Aligned_cols=79 Identities=33% Similarity=0.311 Sum_probs=38.8
Q ss_pred cCCCCCEEEecCCCCCCHHHHHH-hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 288 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 288 (488)
.+.+|+.|++.+ +.+.. +.. +..+++|++|+++++ .++. +..+..++.|+.|++.+|.+....-. . .++
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~~--~--~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDISGL--E--SLK 162 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhccCC--c--cch
Confidence 345666666665 23321 222 345666666666663 3322 22333445566666666655432211 1 145
Q ss_pred CccEEecCCC
Q 011317 289 SLVKLSLRGC 298 (488)
Q Consensus 289 ~L~~L~l~~~ 298 (488)
.|+.++++++
T Consensus 163 ~L~~l~l~~n 172 (414)
T KOG0531|consen 163 SLKLLDLSYN 172 (414)
T ss_pred hhhcccCCcc
Confidence 5566666554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.035 Score=54.53 Aligned_cols=125 Identities=30% Similarity=0.264 Sum_probs=79.5
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTS 314 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~ 314 (488)
+..++.+.+... .+.. ....+..+.+|+.|++.++.+....-. +. .+++|+.|+++++. ++ -.++..+
T Consensus 71 l~~l~~l~l~~n-~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~--~~~~L~~L~ls~N~-I~~i~~l~~l----- 139 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LS--SLVNLQVLDLSFNK-ITKLEGLSTL----- 139 (414)
T ss_pred hHhHHhhccchh-hhhh-hhcccccccceeeeeccccchhhcccc-hh--hhhcchheeccccc-cccccchhhc-----
Confidence 444455554442 2221 233366788999999999876543221 22 48899999999854 54 4555555
Q ss_pred CCCeeEEecCCCCCCCH-HHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 315 KLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+.|+.|++.+ +.++. .++. .+++|+.+++++| .+++..-..+ . .+.+++.+.+.++.
T Consensus 140 -~~L~~L~l~~-N~i~~~~~~~----~l~~L~~l~l~~n-~i~~ie~~~~-~--------~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 140 -TLLKELNLSG-NLISDISGLE----SLKSLKLLDLSYN-RIVDIENDEL-S--------ELISLEELDLGGNS 197 (414)
T ss_pred -cchhhheecc-CcchhccCCc----cchhhhcccCCcc-hhhhhhhhhh-h--------hccchHHHhccCCc
Confidence 6699999998 45542 2333 3788999999888 5544333101 2 67789999999887
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.096 Score=41.43 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=49.9
Q ss_pred CccEEecCCCCCC-CHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 289 SLVKLSLRGCKRL-TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 289 ~L~~L~l~~~~~l-~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
.+..++++.|+-. -.+.+..+..+ ..|+..+|++ +.+.+-. ..+....|.++.|++.++ .+.+...+ ++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~---~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~n-eisdvPeE-~A--- 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKG---YELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANN-EISDVPEE-LA--- 97 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCC---ceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchh-hhhhchHH-Hh---
Confidence 3556677777533 13444444432 5677778877 4444221 123334667788888777 66666555 55
Q ss_pred ccCCCCCCCCccEEeccCCC
Q 011317 368 VDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~ 387 (488)
..|.|+.|+++.|+
T Consensus 98 ------am~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 98 ------AMPALRSLNLRFNP 111 (177)
T ss_pred ------hhHHhhhcccccCc
Confidence 46778888888877
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.67 Score=25.47 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=13.9
Q ss_pred CCCCeEeecCCCCCCHHHHHHHHc
Q 011317 342 VPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
++|+.|+|++| .+++.|...++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHH
Confidence 35666666666 566666666554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.15 E-value=0.077 Score=51.99 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=82.6
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFD 311 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~ 311 (488)
++.+..|+.|+++.+ .+.... ..++.+| |+.|-+++|+++..... +. ..++|..|+.+.|.-.+ ...+..+
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp-~~lC~lp-Lkvli~sNNkl~~lp~~-ig--~~~tl~~ld~s~nei~slpsql~~l-- 188 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLP-DGLCDLP-LKVLIVSNNKLTSLPEE-IG--LLPTLAHLDVSKNEIQSLPSQLGYL-- 188 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCC-hhhhcCc-ceeEEEecCccccCCcc-cc--cchhHHHhhhhhhhhhhchHHhhhH--
Confidence 445667777777763 222211 1233333 77788888766532221 11 25677778887765332 2333333
Q ss_pred cCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH
Q 011317 312 GTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 391 (488)
Q Consensus 312 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~ 391 (488)
.+|+.|.+.. +++.+- ...+. +-.|..|+++.| ++....+.. . .+..|++|-+.+|+ +..
T Consensus 189 ----~slr~l~vrR-n~l~~l-p~El~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 189 ----TSLRDLNVRR-NHLEDL-PEELC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQS 248 (722)
T ss_pred ----HHHHHHHHhh-hhhhhC-CHHHh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CCC
Confidence 5677777766 333211 11122 335888888777 555332221 1 45668888888888 665
Q ss_pred HHHHHhhccCCCCccEEEecCC
Q 011317 392 LAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 392 ~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
....--..+...=.|+|++.-|
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ChHHHHhccceeeeeeecchhc
Confidence 4433322223445677777766
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.3 Score=24.33 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.1
Q ss_pred CCccEEEeCCCccchhHHHHHHh
Q 011317 262 PQLKILLLDGSDISDVGVSYLRL 284 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~~ 284 (488)
++|++|+|++|.+.+.+...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777766654
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.25 E-value=2.1 Score=42.27 Aligned_cols=89 Identities=17% Similarity=0.062 Sum_probs=50.9
Q ss_pred HHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC-
Q 011317 336 TLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV- 414 (488)
Q Consensus 336 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~- 414 (488)
....+.|.+..+++++|.-..-.++..+++ ..|+|+.|+|++|..... ...++.+-....|++|-+.||+
T Consensus 212 ~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred HhhcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcc
Confidence 334456667777777764334445555666 667777777777731111 1112222135677777777776
Q ss_pred ------CHHHHHHHHhhCCCceeec
Q 011317 415 ------NRDILDALARSRPFLNVAC 433 (488)
Q Consensus 415 ------~~~~~~~~~~~~~~l~~~~ 433 (488)
...-+.++...+|++....
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeec
Confidence 2344566777888776553
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.45 E-value=0.25 Score=48.56 Aligned_cols=149 Identities=23% Similarity=0.225 Sum_probs=89.8
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+..|++|+++. +.+...+. .++.|| |+.|.++++ +++.. ...++..+.|..|+.+.|.+... ...+.. +.+
T Consensus 119 ~L~~lt~l~ls~-NqlS~lp~-~lC~lp-Lkvli~sNN-kl~~l-p~~ig~~~tl~~ld~s~nei~sl-psql~~--l~s 190 (722)
T KOG0532|consen 119 NLEALTFLDLSS-NQLSHLPD-GLCDLP-LKVLIVSNN-KLTSL-PEEIGLLPTLAHLDVSKNEIQSL-PSQLGY--LTS 190 (722)
T ss_pred hhhHHHHhhhcc-chhhcCCh-hhhcCc-ceeEEEecC-ccccC-CcccccchhHHHhhhhhhhhhhc-hHHhhh--HHH
Confidence 345677777776 34433322 344444 889998884 44332 23455678889999998866532 223333 677
Q ss_pred ccEEecCCCCCCC-HHHHHHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHc
Q 011317 290 LVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDT-SVIALAS 365 (488)
Q Consensus 290 L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~ 365 (488)
|+.|.+..+.-+. ++.+.. -.|.+|+++. +++. +..+. .+..|++|-|.+|+--+.. .+...+
T Consensus 191 lr~l~vrRn~l~~lp~El~~-------LpLi~lDfSc-Nkis~iPv~fr----~m~~Lq~l~LenNPLqSPPAqIC~kG- 257 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELCS-------LPLIRLDFSC-NKISYLPVDFR----KMRHLQVLQLENNPLQSPPAQICEKG- 257 (722)
T ss_pred HHHHHHhhhhhhhCCHHHhC-------Cceeeeeccc-Cceeecchhhh----hhhhheeeeeccCCCCCChHHHHhcc-
Confidence 8888887743221 222222 3588999986 7776 33333 6789999999998533322 121111
Q ss_pred ccccCCCCCCCCccEEeccCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
...-.++|++.-|+
T Consensus 258 --------kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 258 --------KVHIFKYLSTQACQ 271 (722)
T ss_pred --------ceeeeeeecchhcc
Confidence 33457788888884
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=81.43 E-value=0.32 Score=38.67 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=3.3
Q ss_pred CCCCCEEEEc
Q 011317 159 CASMESICLG 168 (488)
Q Consensus 159 ~~~L~~L~l~ 168 (488)
|++|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 4445555444
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=80.03 E-value=1.5 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.2
Q ss_pred CccEEEeCCCc
Q 011317 263 QLKILLLDGSD 273 (488)
Q Consensus 263 ~L~~L~l~~~~ 273 (488)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-30
Identities = 56/323 (17%), Positives = 107/323 (33%), Gaps = 45/323 (13%)
Query: 67 LPGIQKLC-LSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQH 125
L +KLC L + Y+ + + + LDL A L T I +
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE--------TEDHCTLIQKC 317
Query: 126 GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC----------RVTD 175
L+ L + D G+ ++A C ++ + + V+
Sbjct: 318 PNLEVLETRNV----------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367
Query: 176 TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHV-------CLRWCNLLTNH 228
G + C L + V + + +T+ I +L R +L ++
Sbjct: 368 RGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426
Query: 229 AIKSLASN-TGIKVLDLR-DCKNLGDEALRAISSL-PQLKILLLDGSDISDVGVSYLRLT 285
++SL ++ L D L I P ++ +LL SD G+
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SR 485
Query: 286 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLSDNGILTLATCRVPI 344
+L KL +RGC +++ I+A L+ L + ++ ++ +A I
Sbjct: 486 GCPNLQKLEMRGC-CFSERAIAAAVTKLPS--LRYLWVQGYRASMTGQDLMQMARPYWNI 542
Query: 345 SELRVRQCPLIGDTSVIALASML 367
+ R+ P + I
Sbjct: 543 ELIPSRRVPEVNQQGEIREMEHP 565
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-25
Identities = 72/464 (15%), Positives = 152/464 (32%), Gaps = 75/464 (16%)
Query: 14 SLFLRHNFARVWALASEK---LTSLEIGYISSVMVTELLSPNVEPHQSPN-QIRPSILPG 69
+ + + S + L SL++ + L+ N + +P + L
Sbjct: 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113
Query: 70 IQKLCLSVDYITDAMVGTISQGLV-SLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGK- 127
++ + ++D + +++ L L L T GL I H +
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--------TTDGLLSIVTHCRK 165
Query: 128 LKHLSLIRSQ----------------------EFLITYFRRVNDLGILLMADKCASMESI 165
+K L + S F +T F +++ + +A C S+ S+
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 166 CLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225
+G F + GF + ++ + + + + +C + +
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-----LVFPRKLCRLGLSYM 280
Query: 226 TNHAIKSLASN-TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL 284
+ + L I+ LDL ++ I P L++L I D G+ L
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL-A 338
Query: 285 TVITSLVKLSLRGCK----------RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGI 334
L +L + ++ + + AL G + L+ + + +++ +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE--LEYMAVYV-SDITNESL 395
Query: 335 LTLATCRVPISELRVRQCP-------LIGDTSVIALASMLVDDDRWYGSSIRLLDLY-NC 386
++ T + + R+ L D V +L +R Y
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--------KKLRRFAFYLRQ 447
Query: 387 GGITQLAFRWLKKPYFPRLRWLGVTGSVNRDI-LDALARSRPFL 429
GG+T L ++ + Y P +RW+ + D L +R P L
Sbjct: 448 GGLTDLGLSYIGQ-YSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 56/432 (12%), Positives = 135/432 (31%), Gaps = 89/432 (20%)
Query: 65 SILPGIQKLCLS-VDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN 123
+ ++ L L T + +I + L + ++ + L ++
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS------EKDGKWLHEL- 187
Query: 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 183
+H + + F +T F +++ + +A C S+ S+ +G F + GF
Sbjct: 188 ----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 184 SCSNLYKLRVSHGT-------------QLTDLVFHDISATSL--------SLTHVCLRWC 222
+ ++ +L L + + + + L +
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303
Query: 223 NLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISS---------------------- 260
L T + ++VL+ R+ +GD L ++
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361
Query: 261 ---------------LPQLKILLLDGSDISDVGVSYL--RLTVITSLVKLSLRGCKRLTD 303
+L+ + + SDI++ + + L + + L +R+TD
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421
Query: 304 KCISALFD--GTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSV 360
+ +L+ L+D G+ + + + + D +
Sbjct: 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480
Query: 361 IALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG-SVNRDIL 419
+ + +++ L++ C ++ A P LR+L V G +
Sbjct: 481 MEFSRGC--------PNLQKLEMRGC-CFSERAIAAAVT-KLPSLRYLWVQGYRASMTGQ 530
Query: 420 DALARSRPFLNV 431
D + +RP+ N+
Sbjct: 531 DLMQMARPYWNI 542
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 3e-20
Identities = 39/264 (14%), Positives = 95/264 (35%), Gaps = 26/264 (9%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNSGLQQINQ 124
P ++ L + I D + ++Q L L + + + ++ GL + Q
Sbjct: 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 125 HG-KLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR-------VTDT 176
+L+++++ Y + + + + ++ L R D
Sbjct: 376 GCQELEYMAV---------YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426
Query: 177 GFKTILHSCSNLYKLRVSHG-TQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS 235
G +++L C L + LTDL I S ++ + L + ++ + +
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSR 485
Query: 236 N-TGIKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDGSDISDVGVSYLRLTVI-TSLVK 292
++ L++R C + A+ A + LP L+ L + G S G +++ ++
Sbjct: 486 GCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544
Query: 293 LSLRGCKRLTDKCISALFDGTSKL 316
+ R + + + + +
Sbjct: 545 IPSRRVPEVNQQGEIREMEHPAHI 568
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 26/204 (12%)
Query: 208 SATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRA---------- 257
S + HV + C T + N ++ L L+ L
Sbjct: 46 KIDSETREHVTMALCYTATPDRLSRRFPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPW 103
Query: 258 ----ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313
++L QLK + +SD+ + L L L L C T + ++
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC 163
Query: 314 SKLQLQELDLSNLPHLSDNGILTLATC--RVPISELRVRQCPLIGDTSVIALASMLVDDD 371
K++ ++ S+ + LA + + + + I + +A
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC---- 219
Query: 372 RWYGSSIRLLDLYNCGGITQLAFR 395
S+ + + + + + F
Sbjct: 220 ----RSLVSVKVGDFEILELVGFF 239
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI-N 123
P ++ + L +D + S+G +L L++R + +
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC---------FSERAIAAAVT 510
Query: 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 183
+ L++L + Y + ++ MA ++E I V G +
Sbjct: 511 KLPSLRYLWVQG-------YRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREME 563
Query: 184 SCSNLYKLR 192
+++
Sbjct: 564 HPAHILAYY 572
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-28
Identities = 61/414 (14%), Positives = 133/414 (32%), Gaps = 37/414 (8%)
Query: 31 KLTSLEIGYISSVMVTELLSPNVEPHQSPN-QIRPSILPGIQKLCLSVDYITDAMVGTIS 89
K+ S+E+ L+ + P + S ++++ L +TD + I+
Sbjct: 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126
Query: 90 QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGK-LKHLSLIRSQEFLITYFRRVN 148
+ + L L + GL I + LK L L S V+
Sbjct: 127 KSFKNFKVLVLSSCEGF--------STDGLAAIAATCRNLKELDLRES------DVDDVS 172
Query: 149 DLGILLMADKCASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDI 207
+ D S+ S+ + V+ + + ++ C NL L+++ L L
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232
Query: 208 SATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRD---CKNLGDEALRAISS-LPQ 263
A L + + S S +LR + L A+ S +
Sbjct: 233 RAP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290
Query: 264 LKILLLDGSDISDVGVSYLRLTVITSLVKL-SLRGCKRLTDKCISALFDGTSKLQ----- 317
L L L + + + L + KL L + D + L L+
Sbjct: 291 LTTLNLSYATVQSYDLVKL----LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346
Query: 318 -LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD-DDRWYG 375
+ + L++ G+++++ + + + C + + ++I +A +
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLC 405
Query: 376 SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFL 429
Y + F + + + LR L ++G + + + + +
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 3e-26
Identities = 66/401 (16%), Positives = 125/401 (31%), Gaps = 77/401 (19%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHG 126
P ++ L L+ + + T+ Q L L + + L
Sbjct: 210 CPNLKSLKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK--- 265
Query: 127 KLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCS 186
+L+ LS F + + C+ + ++ L V +L C
Sbjct: 266 ELRCLSG----------FWDAVPAYLPAVYSVCSRLTTLNLSY-ATVQSYDLVKLLCQCP 314
Query: 187 NLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW--------CNLLTNHAIKSLASNTG 238
L +L V + D +++T L + + LT + S++
Sbjct: 315 KLQRLWVLD--YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372
Query: 239 IKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD----------ISDVGVSYLRLTVI 287
L C+ + + AL I+ + P + L + D+G + +
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-VEHC 431
Query: 288 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISEL 347
L +LSL G LTDK + K+++ L ++ SD G+ + + + +L
Sbjct: 432 KDLRRLSLSGL--LTDKVFEYIGTYAKKMEM--LSVAF-AGDSDLGMHHVLSGCDSLRKL 486
Query: 348 RVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRW 407
+R CP + + + ++R L + +C
Sbjct: 487 EIRDCPFGDKALLANASKL---------ETMRSLWMSSC--------------------- 516
Query: 408 LGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDG 448
SV+ L + P LNV E D S
Sbjct: 517 -----SVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCP 552
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 4e-21
Identities = 52/350 (14%), Positives = 101/350 (28%), Gaps = 48/350 (13%)
Query: 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKL 128
+ + + T+ + + ++L+ P + L G
Sbjct: 42 RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHF--------ADFNLVPDGWGG-- 91
Query: 129 KHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL 188
I M+ +E I L VTD + I S N
Sbjct: 92 ------------------YVYPWIEAMSSSYTWLEEIRLKR-MVVTDDCLELIAKSFKNF 132
Query: 189 YKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL--LTNHAIKSLASN-TGIKVLDLR 245
L +S + I+AT +L + LR ++ ++ H + T + L++
Sbjct: 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS 192
Query: 246 DCK-NLGDEALRAI-SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 303
+ AL + + P LK L L+ + + ++ L L L +L G
Sbjct: 193 CLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATL-LQRAPQLEELGTGGYTAEVR 250
Query: 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 363
+ + + LS + + + ++ L + + ++ L
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ-SYDLVKL 309
Query: 364 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413
+L L+ I L LR L V S
Sbjct: 310 LCQCP----------KLQRLWVLDYIEDAGLEVLAS-TCKDLRELRVFPS 348
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 5e-27
Identities = 53/345 (15%), Positives = 107/345 (31%), Gaps = 62/345 (17%)
Query: 9 LMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILP 68
L D SL+ + L G I+ + + H SP ++
Sbjct: 42 LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV------ 95
Query: 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKL 128
Q + LS I + + I L +L L L++ + + ++ L
Sbjct: 96 --QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNL 144
Query: 129 KHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTIL-HSCSN 187
L+L + ++ + + C+ ++ + L T+ + + H
Sbjct: 145 VRLNL--------SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196
Query: 188 LYKLRVSH-GTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRD 246
+ +L +S L + +L H+ L +L N + ++ L L
Sbjct: 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256
Query: 247 CKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306
C ++ E L + +P LK L + G + D +
Sbjct: 257 CYDIIPETLLELGEIPTLK--------------------------TLQVFGI--VPDGTL 288
Query: 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV-PISELRVR 350
L + LQ+ N H + T+ + I ++ R
Sbjct: 289 QLLKEALPHLQI------NCSHFTTIARPTIGNKKNQEIWGIKCR 327
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 8e-25
Identities = 46/256 (17%), Positives = 90/256 (35%), Gaps = 17/256 (6%)
Query: 181 ILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 240
+ + + D + + + H+ L + + L+ + ++
Sbjct: 63 VTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121
Query: 241 VLDLRDCKNLGDEALRAISSLPQLKILLLDG-SDISDVGVSYLRLTVITSLVKLSLRGCK 299
L L + L D + ++ L L L G S S+ + L L+ + L +L+L C
Sbjct: 122 NLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCF 179
Query: 300 RLTDKCISALFDGTSKLQLQELDLSNLPH-LSDNGILTLATCRVPISELRVRQCPLIGDT 358
T+K + S+ + +L+LS L + + TL + L + ++ +
Sbjct: 180 DFTEKHVQVAVAHVSE-TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238
Query: 359 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDI 418
+ + ++ L L C I L + P L+ L V G V
Sbjct: 239 CFQEFFQL---------NYLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGIVPDGT 287
Query: 419 LDALARSRPFLNVACR 434
L L + P L + C
Sbjct: 288 LQLLKEALPHLQINCS 303
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 9e-14
Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 27/218 (12%)
Query: 212 LSLTHVCLRWCNLL-------------TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAI 258
L ++ VC RW L N V+ R ++ D+ L
Sbjct: 30 LKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH 89
Query: 259 SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 318
S +++ + L S I + + L+ + L LSL G RL+D ++ L + L
Sbjct: 90 FSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGL-RLSDPIVNTLAKNS---NL 144
Query: 319 QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 378
L+LS S+ + TL + + EL + C + V + + +I
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-------SETI 197
Query: 379 RLLDLYNC-GGITQLAFRWLKKPYFPRLRWLGVTGSVN 415
L+L + + L + P L L ++ SV
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVM 234
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 74/352 (21%), Positives = 131/352 (37%), Gaps = 65/352 (18%)
Query: 70 IQKLCLSVDYITDAMVGTISQGLVS---LTHLDLRDAPLIEPRITFDLTNSGLQQI---- 122
IQKL L +T A G +S L + L L L D L ++GLQ +
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD---------NLLGDAGLQLLCEGL 137
Query: 123 -NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD---KCASMESICLGGFCRVTDTGF 178
+ +L+ L L ++ +A + + + + + G
Sbjct: 138 LDPQCRLEKLQLEYCS---------LSAASCEPLASVLRAKPDFKELTVSN-NDINEAGV 187
Query: 179 KTIL----HSCSNLYKLRVSHGTQLTDLVFHDIS---ATSLSLTHVCLRWCNLLTNHAIK 231
+ + S L L++ +T D+ A+ SL + L N L + +
Sbjct: 188 RVLCQGLKDSPCQLEALKLES-CGVTSDNCRDLCGIVASKASLRELALG-SNKLGDVGMA 245
Query: 232 SLA-----SNTGIKVLDLRDCKNLGDEALRAISSL----PQLKILLLDGSDISDVGVSYL 282
L ++ ++ L + +C + + + + LK L L G+++ D G L
Sbjct: 246 ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304
Query: 283 RLTVI---TSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHLSDNGILTLA 338
T++ L L ++ C T C S ++ + L EL +SN L D G+ L
Sbjct: 305 CETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC 362
Query: 339 ----TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386
+ L + C + D+S +LA+ L+ S+R LDL N
Sbjct: 363 QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL-----ANHSLRELDLSNN 408
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 62/337 (18%), Positives = 112/337 (33%), Gaps = 68/337 (20%)
Query: 70 IQKLCLSVDYITDAMVGTISQGLV---SLTHLDLRDAPLIEPRITFDLTNSGLQQI---- 122
++KL L ++ A ++ L L + + D+ +G++ +
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN---------DINEAGVRVLCQGL 194
Query: 123 -NQHGKLKHLSLIRSQEFLITYFRRVNDLG------ILLMADKCASMESICLGGFCRVTD 175
+ +L+ L L + + + AS+ + LG ++ D
Sbjct: 195 KDSPCQLEALKL------------ESCGVTSDNCRDLCGIVASKASLRELALGS-NKLGD 241
Query: 176 TGFKTI----LHSCSNLYKLRVSHGTQLTDLVFHDIS---ATSLSLTHVCLRWCNLLTNH 228
G + LH S L L + +T D+ SL + L N L +
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCRVLRAKESLKELSL-AGNELGDE 299
Query: 229 AIKSLA-----SNTGIKVLDLRDCKNLGDEALRAISSL----PQLKILLLDGSDISDVGV 279
+ L ++ L ++ C + SS+ L L + + + D GV
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358
Query: 280 SYL---RLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLS-NLPHLSDNGI 334
L + L L L C ++D S+L L+ELDLS N L D GI
Sbjct: 359 RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN--CLGDAGI 415
Query: 335 LTLA----TCRVPISELRVRQCPLIGDTSVIALASML 367
L L + +L + + L ++
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALE 451
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 62/348 (17%), Positives = 120/348 (34%), Gaps = 58/348 (16%)
Query: 70 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI----NQH 125
IQ L + + ++DA + L + L D LT + + I +
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDD---------CGLTEARCKDISSALRVN 55
Query: 126 GKLKHLSLIRSQEFLITYFRRVNDLGILLMAD----KCASMESICLGGFCRVTDTGFKTI 181
L L+L ++ + D+G+ + ++ + L C +T G +
Sbjct: 56 PALAELNLRSNE---------LGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGCGVL 105
Query: 182 ---LHSCSNLYKLRVSHGTQLTDLVFHDISATSLS----LTHVCLRWCNLLTNHAI---K 231
L + L +L +S L D + L L + L +C+L
Sbjct: 106 SSTLRTLPTLQELHLS-DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164
Query: 232 SLASNTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLR--L 284
L + K L + + ++ + +R + S QL+ L L+ ++ L +
Sbjct: 165 VLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223
Query: 285 TVITSLVKLSLRGCKRLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILTLATCRV 342
SL +L+L K L D ++ L G +L+ L + ++ G L
Sbjct: 224 ASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCRVLR 281
Query: 343 P---ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387
+ EL + +GD L L++ + L + +C
Sbjct: 282 AKESLKELSLAGNE-LGDEGARLLCETLLEPG----CQLESLWVKSCS 324
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL----PQLKI 266
SL + + ++ L + L +V+ L DC L + + ISS P L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 60
Query: 267 LLLDGSDISDVGVSYLR---LTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELD 322
L L +++ DVGV + T + KLSL+ C LT L L LQEL
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELH 119
Query: 323 LSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 378
LS+ L D G+ L + + +L++ C + S LAS+L
Sbjct: 120 LSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAK-----PDF 172
Query: 379 RLLDLYNC 386
+ L + N
Sbjct: 173 KELTVSNN 180
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 18/161 (11%)
Query: 236 NTGIKVLDLRDCKNLGDEALRAISS-LPQLKILLLDGSDISDVGVSYL--RLTVITSLVK 292
+ I+ LD++ L D + L Q +++ LD +++ + L V +L +
Sbjct: 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 293 LSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGILTLA----TCRVPISE 346
L+LR L D + + G T ++Q+L L N L+ G L+ T + E
Sbjct: 61 LNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPT-LQE 117
Query: 347 LRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387
L + +GD + L L+D + L L C
Sbjct: 118 LHLSDNL-LGDAGLQLLCEGLLDP----QCRLEKLQLEYCS 153
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 8e-14
Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 33/229 (14%)
Query: 181 ILHSCSNLYKLRVSHGTQLTDLVFHDISA----TSLSLTHVCLRWCNLLTNHAIKSLAS- 235
+ L +S L + ++ T S+T + L +L L
Sbjct: 17 FTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQI 74
Query: 236 ----NTGIKVLDLRDCKNLGDEALRAISSL-----PQLKILLLDGSDISDVGVSYLR--- 283
+ L+L L ++ + + +L L +D S S +
Sbjct: 75 LAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133
Query: 284 LTVITSLVKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGILTLA--- 338
+ S+ L+LRG L K L + L+L +L+ LA
Sbjct: 134 SNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFL 191
Query: 339 -TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386
+ ++ L + +G S LA + + + L+L
Sbjct: 192 ASIPASVTSLDLSANL-LGLKSYAELAYIFSSIP----NHVVSLNLCLN 235
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 22/169 (13%)
Query: 233 LASNTGIKVLDLRDCKNLGDEALRAISSL-----PQLKILLLDGSDISDVGVSYL--RLT 285
+ G+ LDL NL + + + L L G+ + L L
Sbjct: 18 TSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 286 VI-TSLVKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGILTLA---- 338
I ++ L+L G L+ K L + LDL S
Sbjct: 77 AIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFS 134
Query: 339 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387
I+ L +R +G S L +L +++ L+L
Sbjct: 135 NLPASITSLNLRGND-LGIKSSDELIQIL----AAIPANVNSLNLRGNN 178
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 32/208 (15%)
Query: 209 ATSLSLTHVCLRWCNLLTNHAIKSLAS-----NTGIKVLDLRDCKNLGDEALRAISSL-- 261
+ +T + L NL + + L + L+L +LG + + +
Sbjct: 19 SIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILA 76
Query: 262 ---PQLKILLLDGSDISDVGVSYLR---LTVITSLVKLSLRGCKRLTDKCISALFDG--T 313
+ L L G+ +S L + ++ L L + K S
Sbjct: 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSN 135
Query: 314 SKLQLQELDLSNLPHLSDNGILTLA----TCRVPISELRVRQCPLIGDTSVIALASMLVD 369
+ L+L L L ++ L +R + + LA L
Sbjct: 136 LPASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLAS 193
Query: 370 DDRWYGSSIRLLDLYNCG----GITQLA 393
+S+ LDL +LA
Sbjct: 194 IP----ASVTSLDLSANLLGLKSYAELA 217
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 69/283 (24%)
Query: 70 IQKLCLSVDYITDAMVGTISQGLV----SLTHLDLRDAPLIEPRITFDLTNSGLQQI--- 122
I L L + + Q S+T L+LR DL ++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN---------DLGIKSSDELIQI 161
Query: 123 --NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD----KCASMESICLGGFCRVTDT 176
+ L+L + + +A AS+ S+ L +
Sbjct: 162 LAAIPANVNSLNLRGNN---LA------SKNCAELAKFLASIPASVTSLDLSA-NLLGLK 211
Query: 177 GFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-- 234
+ + + S+ + + L L ++++L
Sbjct: 212 SYAELAYI----------------------FSSIPNHVVSLNLCLNC-LHGPSLENLKLL 248
Query: 235 --SNTGIKVLDLRDC--KNLGDEALRAISS----LPQLKILLLDGSDISDVGVSYLR--- 283
S ++ + L KN+ E +A+ + + ++ ++ +G +I +
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308
Query: 284 LTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSN 325
+ SL + + + + L+E +
Sbjct: 309 RELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 35/203 (17%), Positives = 66/203 (32%), Gaps = 30/203 (14%)
Query: 198 QLTDLVFHDISAT-SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR 256
+L L + + L + + S + ++ L+L +
Sbjct: 37 KLGKLGRQVLPPSELLDHLF-----FHYEFQNQRFSAEVLSSLRQLNLAGV-RMTPVKCT 90
Query: 257 AI-----SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFD 311
+ S L + L + G+ L L V KL L+ L + L D
Sbjct: 91 VVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLN-SLGPEACKDLRD 148
Query: 312 G--TSKLQLQELDLSNLPHLSDNGILTLAT-----CRVPISELRVRQCPLIGDTSVIALA 364
+ Q+ L LSN L+ G+ L ++ L + +GD + LA
Sbjct: 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTS--VTHLSLLHTG-LGDEGLELLA 204
Query: 365 SMLVDDDRWYGSSIRLLDLYNCG 387
+ L + ++ L++ G
Sbjct: 205 AQLDRN-----RQLQELNVAYNG 222
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 58/339 (17%), Positives = 109/339 (32%), Gaps = 82/339 (24%)
Query: 65 SILPGIQKLCLSVDYITDAMVGTISQGLVS----LTHLDLRDAPLIEPRITFDLTNSGLQ 120
+L +++L L+ +T ++ L S L ++L L +GL+
Sbjct: 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS---------CQLDPAGLR 119
Query: 121 QINQH-GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 179
+ + + L L ++N LG + + +
Sbjct: 120 TLLPVFLRARKLGL------------QLNSLG-----PEAC--KDLR------------D 148
Query: 180 TILHSCSNLYKLRVSHGTQLTDLVFHDIS---ATSLSLTHVCLRWCNLLTNHAIKSLA-- 234
+LH + LR+S+ LT + A + S+TH+ L L + ++ LA
Sbjct: 149 LLLHDQCQITTLRLSN-NPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ 206
Query: 235 --SNTGIKVLDLRDCKNLGDEALRAISSL----PQLKILLLDGSDISDVGVSYLR----- 283
N ++ L++ GD A A++ P L++L L +++S G LR
Sbjct: 207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA 265
Query: 284 LTVITSLVKLSLRGCKRLTDKCISAL------------FDGTSKLQLQELDLSNLPHLSD 331
+V G +++ L L+L DL + +
Sbjct: 266 AEGGARVVVSLTEGT-AVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLED-SRGAT 323
Query: 332 NGILTLA-TCRV--PISELRVRQCPLIGDTSVIALASML 367
A RV + L + G S
Sbjct: 324 LNPWRKAQLLRVEGEVRALLEQLGS-SGSPSGSWSHPQF 361
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-12
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 28/129 (21%)
Query: 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLD 270
+ + + + + ++ + L C + D L +S L L+
Sbjct: 60 KYKIQAIDATDSCI-MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ----- 113
Query: 271 GSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHL 329
S++++ + C +TDK I AL + L+ L LS+LP +
Sbjct: 114 -----------------KSMLEMEIISCGNVTDKGIIAL----HHFRNLKYLFLSDLPGV 152
Query: 330 SDNGILTLA 338
+ + A
Sbjct: 153 KEKEKIVQA 161
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 5e-11
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 252 DEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFD 311
D L + KI +D +D + + + + + + K+ L C + D C+ L
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ 108
Query: 312 GTS-KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 364
+ + + E+++ + +++D GI+ L R + L + P + + I A
Sbjct: 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFR-NLKYLFLSDLPGVKEKEKIVQA 161
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-10
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 171 CRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISA---TSLSLTHVCLRWCNLLTN 227
+ GF + + K+R+ + D +S S+ + + C +T+
Sbjct: 71 SCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129
Query: 228 HAIKSLASNTGIKVLDLRDCKNLGDEALRAIS---SLPQLKI 266
I +L +K L L D + ++ + SLP L++
Sbjct: 130 KGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 21/119 (17%)
Query: 87 TISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146
T + +D D+ + + G + ++ + L +
Sbjct: 55 TGPLDKYKIQAIDATDSCI---------MSIGFDHMEGLQYVEKIRLCKCH--------Y 97
Query: 147 VNDLGILLMA---DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDL 202
+ D + ++ + SM + + VTD G LH NL L +S + +
Sbjct: 98 IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEK 155
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 17/99 (17%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 373
K ++Q +D ++ + G + + + ++R+ +C I D + L+ +
Sbjct: 59 DKYKIQAIDATDSC-IMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQL-----EN 111
Query: 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 412
S+ +++ +CG +T L F L++L ++
Sbjct: 112 LQKSMLEMEIISCGNVTDKGIIALHH--FRNLKYLFLSD 148
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 45/298 (15%), Positives = 89/298 (29%), Gaps = 57/298 (19%)
Query: 68 PGIQKLCLSVDYITDAMVGTISQGLV---SLTHLDLRDAPLIEPRITFDLTNSGLQQI-- 122
++++ LS + I +S+ + L + D + D L+ +
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK---DEIPEALRLLLQ 88
Query: 123 --NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD---KCASMESICLGGFCRVTDTG 177
+ KL + L + + D K +E + L +
Sbjct: 89 ALLKCPKLHTVRLSDNA---------FGPTAQEPLIDFLSKHTPLEHLYLHN-NGLGPQA 138
Query: 178 FKTI---LHSCSNLYKLRVSHGTQLTDLVFH-----DISATSL--------SLTHVCLRW 221
I L + K + + L ++ + S L V +
Sbjct: 139 GAKIARALQELAVNKKAKNA--PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196
Query: 222 CNL----LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAIS----SLPQLKILLLDGSD 273
+ + + ++ LA +KVLDL+D A++ S P L+ L L+
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL 255
Query: 274 ISDVGVSY----LRLTVITSLVKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSN 325
+S G + L L L+ + + L L L+L+
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 312
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-11
Identities = 52/378 (13%), Positives = 102/378 (26%), Gaps = 89/378 (23%)
Query: 158 KCASMESICLGGFCRVTDTGFKTI---LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSL 214
+ S++ I L G + + + + S +L S + L
Sbjct: 30 EDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL- 87
Query: 215 THVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL----PQLKILLLD 270
++L + + L D G A + L+ L L
Sbjct: 88 ----------------QALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLH 130
Query: 271 GSDISDVGVSYL-----------RLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-L 318
+ + + + + L + RL + + + L
Sbjct: 131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLL 189
Query: 319 QELDLSNLPHLSDNGILT-----LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 373
+ + + GI LA C+ + L ++ ALA L
Sbjct: 190 HTVKMVQN-GIRPEGIEHLLLEGLAYCQE-LKVLDLQDNT-FTHLGSSALAIALKSW--- 243
Query: 374 YGSSIRLLDLYNCG----GITQLAFRWLKKPYFPRLRWLGVTGSVN-------RDILDAL 422
++R L L +C G + K L+ L + N R + +
Sbjct: 244 --PNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQY--NEIELDAVRTLKTVI 298
Query: 423 ARSRPFLNVACRGEELGVDQWDNSDG---------------MYMHDYDEVDELEQWLMEG 467
P L L + N + DE+D++E+ E
Sbjct: 299 DEKMPDL------LFLEL--NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEE 350
Query: 468 EDESDNDEEMANAEINAE 485
E++ + + E + E
Sbjct: 351 EEDEEEEAESQSPEPETS 368
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 35/205 (17%)
Query: 210 TSLSLTHVCLRWCNLLTNHA---IKSLASNTGIKVLDLRDCKNLGDEALRAISSL----P 262
S+ L+ + T L + +K + L +G EA R +S
Sbjct: 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKK 60
Query: 263 QLKILLLDGSDISDVGVSYLR--------LTVITSLVKLSLRGCKRLTDKCISALFDG-T 313
L+I V L L + L L D +
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLS 119
Query: 314 SKLQLQELDLSNLPHLSDNGILTLAT--CRVPISELRVRQCPL---------IGDTSVIA 362
L+ L L N L +A + +++ PL + + S+
Sbjct: 120 KHTPLEHLYLHN-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178
Query: 363 LASMLVDDDRWYGSSIRLLDLYNCG 387
A + + + G
Sbjct: 179 WAKTFQSH-----RLLHTVKMVQNG 198
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 47/248 (18%)
Query: 68 PGIQKLCLSVDYITDAMVGTISQGL---VSLTHLDLRDAPLIEPRITFDLTNSG------ 118
P + + LS + + L L HL L + L
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---------GLGPQAGAKIAR 144
Query: 119 -LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD---KCASMESICLGGFCRVT 174
LQ++ + K K+ +RS +I R+ + + A + ++ + +
Sbjct: 145 ALQELAVNKKAKNAPPLRS---IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ-NGIR 200
Query: 175 DTGFKTI----LHSCSNLYKLRVSHGTQLTDLVFHDIS---ATSLSLTHVCLRWCNLLTN 227
G + + L C L L + T L ++ + +L + L LL+
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQ-DNTFTHLGSSALAIALKSWPNLRELGLND-CLLSA 258
Query: 228 HAIKSLA------SNTGIKVLDLRDCKNLGDEALRAISS-----LPQLKILLLDGSDISD 276
++ N G++ L L+ + +A+R + + +P L L L+G+ S+
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
Query: 277 VGVSYLRL 284
+
Sbjct: 318 EDDVVDEI 325
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 38/162 (23%)
Query: 231 KSLASNTGIKVLDLRDCKNLGDEALRAISSL----PQLKILLLDGSDISDVGVSYLR--L 284
+ ++ ++ ++L + N+ L+A + +K + G+ +D L L
Sbjct: 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89
Query: 285 TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHLSDNGILTLATCRVP 343
V +L L++ ++ I AL + L EL + N
Sbjct: 90 KVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDN------------------ 130
Query: 344 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385
Q +G+ + +A+ML +++ +
Sbjct: 131 -------QSQPLGNNVEMEIANML-----EKNTTLLKFGYHF 160
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 65/507 (12%), Positives = 143/507 (28%), Gaps = 127/507 (25%)
Query: 12 DISLFLRHNFAR------VWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPS 65
DI F V + L+ EI +I ++S + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-------IMSKDAV-----SGTL-- 65
Query: 66 ILPGIQKLCLSVDYITDAMVGTISQG----LVSLTHLDLRDAPLIEPRITFDLTNSGLQQ 121
L L + + V + + L+S + R + + L
Sbjct: 66 RL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMYIEQRDRLYN 121
Query: 122 INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGF-KT 180
NQ ++ R Q L L+ + +++ + G G KT
Sbjct: 122 DNQ--VFAKYNVSRLQP--------YLKLRQALLELR--PAKNVLIDG-----VLGSGKT 164
Query: 181 IL--HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238
+ C + YK++ ++ +F ++ + + L L + S +
Sbjct: 165 WVALDVCLS-YKVQ----CKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298
+++ + LR + + LL ++ + C
Sbjct: 219 HSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----------WNAFNLSC 266
Query: 299 KRL--T-DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC-RVPISELRVRQC-- 352
K L T K ++ + + LD ++ D L +L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 353 -PLIGDTSVIALASMLVDDDRW--Y------------GSSIRLLD------LYNCGGITQ 391
P S+IA S+ W + SS+ +L+ +++ +
Sbjct: 326 NPRR--LSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----R 377
Query: 392 LA-FR---WLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSD 447
L+ F + + W V S +++ L + L V++
Sbjct: 378 LSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYS--L----------VEKQPKES 424
Query: 448 GMYMHDY--------DEVDELEQWLME 466
+ + + L + +++
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVD 451
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 76/538 (14%), Positives = 157/538 (29%), Gaps = 166/538 (30%)
Query: 12 DISLFLRHNFAR---VWALASEKLTSLE-IGYIS---------SVMVTELLSPNVEPHQS 58
D +F ++N +R L + L L + + + ++ +
Sbjct: 122 DNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 59 PNQI---------RP-SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEP 108
+I P ++L +QKL +D S +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQID-----------PNWTSRSDHSSN------I 223
Query: 109 RITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLG 168
++ + L+++ + ++ L L+ V + + L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN-CL------LV--LLNVQNAKAWNAFN---------LS 265
Query: 169 GFCR--VTDTGFKTILHSCSNLYKLRVS---HGTQLTD-------LVFHDISATSL---- 212
C+ +T T FK + S +S H LT L + D L
Sbjct: 266 --CKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 213 ---SLTHVCL----------RWCNLLT------NHAIKSLASNTGIKVLDLRDCKNLGDE 253
+ + + W N I+S + VL+ + + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKM--- 374
Query: 254 ALRAISSLPQ-LKI------LLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306
+S P I L+ SDV V V+ L K SL ++ +
Sbjct: 375 -FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV------VVNKLHKYSL--VEKQPKEST 425
Query: 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 366
++ +L+++ + L H R + + + D
Sbjct: 426 ISIPSIYLELKVKLENEYAL-H------------RSIVDHYNIPKTFDSDDLIP------ 466
Query: 367 LVDDDRWY---G---SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILD 420
D +Y G +I + + L FR+L++ ++R + + IL+
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILN 522
Query: 421 ALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDE-VDELEQWLMEGEDESDNDEEM 477
L + + + C DN Y+ V+ + +L + E+ +
Sbjct: 523 TLQQLKFYKPYIC----------DNDP-----KYERLVNAILDFLPKIEENLICSKYT 565
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 54.6 bits (130), Expect = 3e-08
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 20/171 (11%)
Query: 209 ATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAI--SSLPQLKI 266
L ++ ++ N L+ +K L++ L D + I S LP L+
Sbjct: 169 DAMPLLNNLKIKGTNNLS----IGKKPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEK 223
Query: 267 LLLDGS---DISDVGVS----YLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 319
L+L D ++ +L L + + + + QL+
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLE 282
Query: 320 ELDLSNLPHLSDNGILTLATCRVPISELR---VRQCPLIGDTSVIALASML 367
+D+S L+D G L I L+ ++ + D L L
Sbjct: 283 TMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL 331
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 3e-06
Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 24/217 (11%)
Query: 120 QQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 179
++ H + I +E I++ DL +L A + I
Sbjct: 135 KEKFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMPLLNNLKIKGT-------NNLS 186
Query: 180 TILHSCSNLYKLRVSHGTQLTDLVFHDISATSL-SLTHVCLRWC--NLLTNHAIKSLA-- 234
NL L + G D V DI + L +L + L + + +
Sbjct: 187 IGKKPRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245
Query: 235 ----SNTGIKVLDLRDCKNLGD--EALRAISSLPQLKILLLDGSDISDVGVSYL--RLTV 286
+K L + D + E LPQL+ + + ++D G L +
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305
Query: 287 ITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELD 322
I L ++++ L+D+ L K+ + +
Sbjct: 306 IKHLKFINMKYN-YLSDEMKKELQKSLPMKIDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 5e-06
Identities = 22/191 (11%), Positives = 57/191 (29%), Gaps = 7/191 (3%)
Query: 221 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVS 280
L G + DC ++ D + + L D + +S
Sbjct: 98 DKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEIS 157
Query: 281 YLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340
++ ++ ++ + + L+ L++ + L D+ + +
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG-GLPDSVVEDILGS 216
Query: 341 RVPISE---LRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397
+P E L V D + + D +++ L + + + +L
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD---RFPNLKWLGIVDAEEQNVVVEMFL 273
Query: 398 KKPYFPRLRWL 408
+ P+L +
Sbjct: 274 ESDILPQLETM 284
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 23/164 (14%)
Query: 173 VTDTGFKTILHSC---SNLYKLRVSHGTQLTDLVFHDISATSLS-------LTHVCLRWC 222
+ D+ FK L+ S+ + + LT + +I+ T L+ + + +
Sbjct: 17 IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINN- 75
Query: 223 NLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYL 282
TN ++ + ++ L + ++ + + +S L L +L + S D ++
Sbjct: 76 IHATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK- 131
Query: 283 RLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL-QLQELDLSN 325
+ + + + L +TD I L L +L+ L++
Sbjct: 132 -INTLPKVNSIDLSYNGAITD--IMPL----KTLPELKSLNIQF 168
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 38/226 (16%)
Query: 53 VEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQG-LVSLTHLDLRDAPLIEPRIT 111
++ Q I S L + I++ + SLT++ L + +T
Sbjct: 8 LKASQDNVNIPDSTFKAYLNGLLGQSSTAN-----ITEAQMNSLTYITLANI-----NVT 57
Query: 112 FDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC 171
DLT I +K L++ + + +++E + + G
Sbjct: 58 -DLTG-----IEYAHNIKDLTI---------NNIHATNYNPI---SGLSNLERLRIMG-K 98
Query: 172 RVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIK 231
VT L ++L L +SH + D + I+ T + + L + +T+ I
Sbjct: 99 DVTSDKIPN-LSGLTSLTLLDISH-SAHDDSILTKIN-TLPKVNSIDLSYNGAITD--IM 153
Query: 232 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDV 277
L + +K L+++ + D R I P+L L I
Sbjct: 154 PLKTLPELKSLNIQFDG-VHD--YRGIEDFPKLNQLYAFSQTIGGK 196
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 53/326 (16%), Positives = 103/326 (31%), Gaps = 67/326 (20%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIE-PRITFDLTNSGLQQINQH 125
L ++ L L+ + I + GL +L L+L L E F GL
Sbjct: 289 LKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNF----YGLP----- 338
Query: 126 GKLKHLSLIRSQEFLITY--FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 183
K+ ++ L ++ +I F+ + L L + D +T +H
Sbjct: 339 -KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD-------------NALTT------IH 378
Query: 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLD 243
++ + +S + +L+ + L L + L +++L
Sbjct: 379 FIPSIPDIFLSGNK------LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 244 LRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVI---TSLVKLSLRGCKR 300
L + + S P L+ L L + + + L V + L L L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY- 491
Query: 301 LTDKCISALFDGTSK--LQLQELDLSN-----LP-----------HLSDNGILTLATCRV 342
+++L G L+ L L++ L +S N +L
Sbjct: 492 -----LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVF 546
Query: 343 P-ISELRVRQCPLIGDTSVIALASML 367
+S L + I + + + L
Sbjct: 547 VSLSVLDITHNKFICECELSTFINWL 572
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 45/306 (14%), Positives = 89/306 (29%), Gaps = 70/306 (22%)
Query: 64 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRD---APLIEPRI--------TF 112
P +L ++L LS +YI + L L L+L I+
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 113 DLTNSGLQQINQH-----GKLKHLSL----IRSQEFLITYFRRVNDLGILLMADKCASME 163
DL +S + ++ L L L + YFR + L L +
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL-------- 130
Query: 164 SICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223
++ ++L + S Q+ + H++ L L + +
Sbjct: 131 -----SKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELE----PLQGKTLSFFS 180
Query: 224 LLTNHAIKSLAS-----------NTGIKVLDLRD-----------CKNLGDEALRAISSL 261
L N + S S N +++LD+ + ++
Sbjct: 181 LAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 262 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT--SKLQLQ 319
+ +I D + +S+ L L + +L + L+
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF------VFSLNSRVFETLKDLK 293
Query: 320 ELDLSN 325
L+L+
Sbjct: 294 VLNLAY 299
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 59/402 (14%), Positives = 114/402 (28%), Gaps = 74/402 (18%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL--IEPRITFDLTNSGLQQIN- 123
L + +L LS + I + L SL +D + + L L +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 124 --------------------QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASME 163
++ L+ L + + + N + +
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241
Query: 164 SICLG-GFCRVTDTGFKTILHSC-SNLYKLRVSHG--TQLTDLVFHD-ISATSLSLTHVC 218
+ G GF + D T S++ L +SHG L VF L+L +
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 219 LR------------------WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISS 260
+ NLL + + +DL+ + +
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKF 360
Query: 261 LPQLKILLLDGSDISDVGVS------YLRLTVITSLVKLSLRG------CKRLTDKCISA 308
L +L+ L L + ++ + +L + +L K++L RL + I
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 309 LFDGTSKLQLQELDLSN--LPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 366
LQ L L+ S + + + +L + + L +
Sbjct: 421 FLLRVPH--LQILILNQNRFSSCSGDQTPSENPS---LEQLFLGENMLQLAWETELCWDV 475
Query: 367 LVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWL 408
S +++L L + + L LR L
Sbjct: 476 FEG-----LSHLQVLYLNHN-YLNSLPPGVFSH--LTALRGL 509
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 28/253 (11%), Positives = 65/253 (25%), Gaps = 33/253 (13%)
Query: 91 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDL 150
L L L F + + + + L
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 151 GILLMADKCASMESICLGGFCRVTDTGFKTI----------LHSCSNLYKLRVSHGTQLT 200
+ + M+ I + DT + + + L + ++ + T
Sbjct: 405 QDAIN--RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN-SPFT 461
Query: 201 DLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISS 260
++ + N S ++ + ++L +C N+ +
Sbjct: 462 YD------NIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLP-DFLYD 513
Query: 261 LPQLKILLLDGSDISDVGVSYLRLTVI-------TSLVKLSLRGCKRLTDKCISALFDGT 313
LP+L+ L + + T + + + L + SA
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL--- 569
Query: 314 SKL-QLQELDLSN 325
K+ +L LD +
Sbjct: 570 QKMVKLGLLDCVH 582
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 20/171 (11%), Positives = 52/171 (30%), Gaps = 30/171 (17%)
Query: 182 LHSCSNLYKLRVSHGTQLTDL---------VFHDISATSLSLTHVCLRWCNLLTNHAIKS 232
S + + S+ ++ + I+A++++L++ N + +
Sbjct: 640 AKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSY------NEIQKFPTEL 692
Query: 233 LASNTGIKVLDLRDCK------NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTV 286
A+ + I + L + N + L + L + ++ + R T
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATT 751
Query: 287 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHLSDNGILT 336
+ L + + S+ L+ + + N IL
Sbjct: 752 LPYLSNMDVSYNC------FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 42/261 (16%), Positives = 93/261 (35%), Gaps = 20/261 (7%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHG 126
LP ++ L + I ++ GL ++ +L+L+ + + L
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329
Query: 127 KLKHLSLIRSQ--EFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHS 184
L+HL++ + F + +L L +++ S+ ++ F +
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH--------- 380
Query: 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDL 244
S L+ L ++ +++ + S L + L + + I + L
Sbjct: 381 -SPLHILNLTK-NKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 245 RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304
K L + + +P L+ L+L + +V S + +L L L + +
Sbjct: 438 SYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIAN- 494
Query: 305 CISALFDGTSKLQLQELDLSN 325
+ +G K L+ LDL +
Sbjct: 495 INDDMLEGLEK--LEILDLQH 513
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 52/326 (15%), Positives = 111/326 (34%), Gaps = 46/326 (14%)
Query: 14 SLFLRHN-FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQK 72
FL +N +++ + L ++ + + +S P + L ++
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW--LKCLEH 333
Query: 73 LCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL----IEPRITFDLTNSGLQQINQHGKL 128
L + + I GL++L +L L ++ + L +S L +N L
Sbjct: 334 LNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN----L 388
Query: 129 KH--LSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCS 186
+S I S F +E + LG +
Sbjct: 389 TKNKISKIESDAF-----------------SWLGHLEVLDLGL-NEIGQELTGQEWRGLE 430
Query: 187 NLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT-NHAIKSLASNTGIKVLDLR 245
N++++ +S+ + L + + SL + LR L + + + +LDL
Sbjct: 431 NIFEIYLSY-NKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 246 DCKNLGDEALRAISSLPQLKILLLDGSDISDV------GVSYLRLTVITSLVKLSLRGCK 299
+ N+ + + L +L+IL L ++++ + G L ++ L L+L
Sbjct: 489 NN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN- 546
Query: 300 RLTDKCISALFDGTSKLQLQELDLSN 325
+ + D L+ +DL
Sbjct: 547 GFDEIPVEVFKDLFE---LKIIDLGL 569
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 28/233 (12%)
Query: 181 ILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL--LTNHAIKSLASNTG 238
+ L L + H +L+ L + + +LT + L ++ + N+ +
Sbjct: 68 LCQKLPMLKVLNLQH-NELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKN--- 122
Query: 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298
+ LDL L L L L+ LLL + I + L + +SL KL L
Sbjct: 123 LITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 299 --KRLTDKCISALFDGTSKLQLQELDLS-NLPHLSDNGILTLATCRVPISELRVRQCPLI 355
K + C A+ +L L L+ S L L I L + +
Sbjct: 182 QIKEFSPGCFHAIG------RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QL 234
Query: 356 GDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWL 408
TS + +++ +LDL + + P+L +
Sbjct: 235 STTSNTTFLGL-------KWTNLTMLDLSYN-NLNVVGNDSFAW--LPQLEYF 277
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 47/266 (17%), Positives = 80/266 (30%), Gaps = 59/266 (22%)
Query: 64 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL--IEPRITFDLTNSGLQQ 121
+ I L L+ + + + LT LD+ + +EP + L
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPM----- 74
Query: 122 INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI 181
LK L+L N+L L
Sbjct: 75 ------LKVLNLQH------------NELSQLS------------------------DKT 92
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 241
C+NL +L + + + + +L + L N L++ + + ++
Sbjct: 93 FAFCTNLTELHLMS-NSIQKIKNNPFVKQK-NLITLDLSH-NGLSSTKLGTQVQLENLQE 149
Query: 242 LDLRDCK--NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 299
L L + K L E L I + LK L L + I + I L L L +
Sbjct: 150 LLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPGCFHA--IGRLFGLFLNNVQ 206
Query: 300 RLTDKCISALFDGTSKLQLQELDLSN 325
L L + ++ L LSN
Sbjct: 207 -LGPSLTEKLCLELANTSIRNLSLSN 231
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 30/269 (11%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHG 126
+ I L L + + + L S+ +L+LRD L S L
Sbjct: 171 IRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLAR------FQFSPLPVDEVSS 223
Query: 127 KLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH--- 183
+K L+ R F + L ++ + L G + +
Sbjct: 224 PMKKLAF-RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 184 -SCSNLYKLRVSH--GTQLTDLVFHDISA-TSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239
+ +L + V+ + +++ + + L+ + L S +
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF---LVPCSFSQHLKS---L 336
Query: 240 KVLDLRDCK--NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 297
+ LDL + + + P L+ L+L + + + + L + +L L +
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396
Query: 298 CKRLTDKCISALFDGTSKLQ-LQELDLSN 325
+ D + ++ L+LS+
Sbjct: 397 NT------FHPMPDSCQWPEKMRFLNLSS 419
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 27/280 (9%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIE--PRITF---------DLT 115
L ++ L L + V ++ L +L L + + RI F ++
Sbjct: 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156
Query: 116 NSGLQQINQH-----GKLKHLSLIRSQ--EFLITYFRRVNDLGILLMADKCASMESICLG 168
L+ + HL+L S+ L + ++ + L + + ++
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL--RDTNLARFQFS 214
Query: 169 GFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 227
+ K + S L + +L + T L N +
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274
Query: 228 HAIKSLAS--NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLT 285
+ L I+ L + D + S L ++K + ++ S + V S+ +
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFLVPCSFSQH- 332
Query: 286 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 325
+ SL L L + ++ + + LQ L LS
Sbjct: 333 -LKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQ 370
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 16/149 (10%)
Query: 181 ILHSCSNLYKLRVSHG--TQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238
H S L +L ++ ++L + + L L+ N N S ++
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA------NKFENLCQISASNFPS 326
Query: 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298
+ L ++ + + +L L+ L L DI L+L ++ L L+L
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 299 K--RLTDKCISALFDGTSKLQLQELDLSN 325
+ L + QL+ LDL+
Sbjct: 387 EPLSLKTEAFKEC------PQLELLDLAF 409
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 53/316 (16%), Positives = 102/316 (32%), Gaps = 41/316 (12%)
Query: 31 KLTSLEIGYISSVMVTEL-LSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTIS 89
+ +E G S + L ++ S + + D
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 90 Q-GLVSLTHLDLRDAPL--IEPRI--------TFDLTNSGLQQINQH----GKLKHLSLI 134
+S+ ++L+ I DLT + L ++ LK L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309
Query: 135 RSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVS 194
++ F + + A S+ + + G + + G L + NL +L +S
Sbjct: 310 ANK------FENLCQI----SASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDLS 358
Query: 195 HGTQLTDLVFHDISATSL-SLTHVCLRWCNL--LTNHAIKSLASNTGIKVLDLRDCKNLG 251
H + ++ +L L + L + L A K +++LDL +
Sbjct: 359 H-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ---LELLDLAFTRLKV 414
Query: 252 DEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC--KRLTDKCISAL 309
+A +L LK+L L S + +L L+L+G + + ++L
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL--PALQHLNLQGNHFPKGNIQKTNSL 472
Query: 310 FDGTSKLQLQELDLSN 325
L+ L LS
Sbjct: 473 QTLGR---LEILVLSF 485
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 29/169 (17%)
Query: 181 ILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 240
L L L T ++ + F + +L + L N +++ + +K
Sbjct: 100 ALSGPKALKHLFFIQ-TGISSIDFIPLHNQK-TLESLYLGS-NHISSIKLPKGFPTEKLK 156
Query: 241 VLDLRDCK--NLGDEALRAISSL----------------------PQLKILLLDGSDISD 276
VLD ++ L E + ++ + L G+
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216
Query: 277 VGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 325
V L+ + I SL + A+F+G ++ ++ ++L
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQK 263
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 213 SLTHVCLRWCNLLTNHAIKSLA----SNTGIKVLDLRDCKNLGDEALRAISSL----PQL 264
L V + ++ I+SL ++ I+ L + + D R + L P L
Sbjct: 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSL 100
Query: 265 KILLLDGSDISDVGVSYLR--LTVITSLVKLSL 295
++L ++ + ++ ++ L V S+V+
Sbjct: 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 6e-05
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQ----LKILLLDGSDISDVGVSYLR--LTV 286
+T +K +++ + K + E +R++ ++ L + ISD L +
Sbjct: 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET 96
Query: 287 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQ----LQELDLSNLPH--LSDNGILTLA 338
SL L++ LT + ++ L + E N L + + +
Sbjct: 97 SPSLRVLNVESN-FLTPELLARLLRS---TLVTQSIVEFKADNQRQSVLGNQVEMDMM 150
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 51/324 (15%), Positives = 104/324 (32%), Gaps = 41/324 (12%)
Query: 8 ILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSIL 67
I F + ++ + + +LE+ I +L N + +
Sbjct: 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC-----VLEDNKCSYFLSILAKLQTN 219
Query: 68 PGIQKLCLSVDYITDAMVGTISQGL--VSLTHLDLRDAPLIEPRI--TFDLTNSGLQQIN 123
P + L L+ T I Q + ++ + + + L FD + + L+ ++
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 183
H ++ Q ++ F +N + + + +
Sbjct: 280 IH-QVVSDVFGFPQSYIYEIFSNMNIKNF-----TVSGTRMVHMLCPSK----------- 322
Query: 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT-NHAIKSLASNTGIKVL 242
S L S+ LTD VF + + L + L+ L + + ++ L
Sbjct: 323 -ISPFLHLDFSN-NLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQL 379
Query: 243 DLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 302
D+ DE S L L + + ++D L + L L K
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNK--- 432
Query: 303 DKCISALFDGTSKL-QLQELDLSN 325
I ++ KL LQEL++++
Sbjct: 433 ---IKSIPKQVVKLEALQELNVAS 453
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 43/324 (13%), Positives = 89/324 (27%), Gaps = 69/324 (21%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL----------IEPRITFDLTN 116
++ L LS + + + L L L L + +
Sbjct: 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148
Query: 117 SGLQQINQHGKLKHLSL---------------IRSQEFLITYFRRVNDLGILLMADKCAS 161
+ L+ + I ++++ +L +KC+
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208
Query: 162 MESICLGGF------------CRVTDTGFKTILH--SCSNLYKLRVSHGTQLTDLVFHDI 207
SI T F IL + ++ +S+ L F D
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268
Query: 208 SATSLSLTHVCLRW-------------CNLLTNHAIKSLASN-------------TGIKV 241
+ SL + + + +N IK+ + +
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328
Query: 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301
LD + L D L +L+ L+L + + ++ T + SL +L + +
Sbjct: 329 LDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-V 386
Query: 302 TDKCISALFDGTSKLQLQELDLSN 325
+ T L L++S+
Sbjct: 387 SYDEKKGDCSWTK--SLLSLNMSS 408
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 12/152 (7%)
Query: 176 TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS 235
L L H + L + + L ++ + + N +
Sbjct: 389 IIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLG 446
Query: 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL 295
T + L + + ++ L L L + + L L++
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL--HRLQLLNM 504
Query: 296 RGCKRLTDKCISALFDGT--SKLQLQELDLSN 325
+ L L LD S
Sbjct: 505 SHNN------LLFLDSSHYNQLYSLSTLDCSF 530
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 50/264 (18%)
Query: 90 QGLVSLTHLDLRDAPL--IEPRI--------TFDLTNSGLQQI-----NQHGKLKHLSL- 133
GL L++L L P+ P + L + Q LK L++
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 134 ---IRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYK 190
I S + L YF + +L + ++ +++I + + +
Sbjct: 137 HNFIHSCK-LPAYFSNLTNLVHVDLSY--NYIQTITVNDLQFLR--------ENPQVNLS 185
Query: 191 LRVSHG--TQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDL--- 244
L +S + D F I L+L N +++ +K+ N G+ V L
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRG------NFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 245 --RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 302
+D +NL + L + I + +D ++ + ++ +SL G
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS--- 296
Query: 303 DKCISALFDGTSKLQLQELDLSNL 326
I L D + Q L +
Sbjct: 297 ---IKYLEDVPKHFKWQSLSIIRC 317
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 59/347 (17%), Positives = 97/347 (27%), Gaps = 77/347 (22%)
Query: 92 LVSLTHLDLRDAPL---IEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148
+ L L LR I +L +++ + + F + +
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGL---HVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG--TQLTDLVFHD 206
D+ I + S + F H +N+ + ++ L D+ H
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKF------------HCLANVSAMSLAGVSIKYLEDVPKH- 306
Query: 207 ISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKI 266
SLS+ L L +K L L K +LP L
Sbjct: 307 FKWQSLSIIR------CQLKQFPTLDL---PFLKSLTLTMNKGSISFKK---VALPSLSY 354
Query: 267 LLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS-- 324
L L + +S G SL L L +SA F G +LQ LD
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII--MSANFMGLE--ELQHLDFQHS 409
Query: 325 ------------NLP-----HLSDNGILTLATCRVP----ISELRVRQCPLIGDTSVIAL 363
+L +S ++ L++ +T
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 364 ASMLVDDDRWYGSSIRLLDLYNCG--GITQLAFRWLKKPYFPRLRWL 408
A+ +++ LDL C I+ F L RL+ L
Sbjct: 470 ANT---------TNLTFLDLSKCQLEQISWGVFDTL-----HRLQLL 502
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 53/274 (19%), Positives = 93/274 (33%), Gaps = 73/274 (26%)
Query: 60 NQIRP-SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG 118
QI P K L +TD T ++ L S+ + ++ I + G
Sbjct: 12 KQIFPDDAFAETIKDNLKKKSVTD--AVTQNE-LNSIDQIIANNS-----DIK-SV--QG 60
Query: 119 LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGF 178
+Q + + L L ++ D+ L ++ + L ++ D
Sbjct: 61 IQYLP---NVTKLFL---------NGNKLTDIKPL---TNLKNLGWLFLDE-NKIKDLSS 104
Query: 179 KTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238
L L SLSL H N +++ I L
Sbjct: 105 ---LKDLKKL---------------------KSLSLEH------NGISD--INGLVHLPQ 132
Query: 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298
++ L L + K + D + +S L +L L L+ + ISD+ L +T L L L
Sbjct: 133 LESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN 185
Query: 299 KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 332
++D + AL + L L+L + L+
Sbjct: 186 H-ISD--LRALAGLKN---LDVLELFSQECLNKP 213
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 46/238 (19%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 67 LPGIQKLCLSVDYITDAMVGTIS--QGLVSLTHLDLRDAPL--IEPR------ITFDLTN 116
L GI L +T I Q L +L L+L+D + + P +L+
Sbjct: 40 LDGITTLSAFGTGVTT-----IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94
Query: 117 SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDT 176
+ L+ ++ L+ + + L ++ D+ L ++++ + L ++T+
Sbjct: 95 NPLKNVSAIAGLQSI------KTLDLTSTQITDVTPL---AGLSNLQVLYLDL-NQITNI 144
Query: 177 GFKTILHSCSNLYKLRVSHGTQLTDL-VFHDISA-TSLSLTHVCLRWCNLLTNHAIKSLA 234
L +NL L + + Q++DL ++S T+L N +++ I LA
Sbjct: 145 SP---LAGLTNLQYLSIGN-AQVSDLTPLANLSKLTTLKADD------NKISD--ISPLA 192
Query: 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 292
S + + L++ + + +++ L I+ L I++ V Y V+ ++VK
Sbjct: 193 SLPNLIEVHLKNNQI---SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 47/304 (15%), Positives = 104/304 (34%), Gaps = 66/304 (21%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRI-------TFDLTNSGL 119
L G+ KL + + IT + +LT+L L + + + L
Sbjct: 63 LTGLTKLICTSNNITTLDLS----QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118
Query: 120 QQINQHG--KLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTG 177
+++ L +L+ R+ +T D+ + + ++T
Sbjct: 119 TKLDVSQNPLLTYLNCARNT---LTEI----DVS------HNTQLTELDCHLNKKITKLD 165
Query: 178 FKTILHSCSNLYKLRVSHGTQLTDLVFHDISA-TSLSLTHVCLRWCNLLTNHAIKSL-AS 235
+ L L S ++T+L L+ + +L N + L S
Sbjct: 166 V----TPQTQLTTLDCSF-NKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCS 220
Query: 236 NTGIKVLDLRDCKNLGDEALRA---------ISSLPQLKILLLDGSDISDVGVSYLRLTV 286
+ + +D+ L +S+L +L L +D+ ++ +++
Sbjct: 221 SNKLTEIDVTPLTQL--TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN---- 274
Query: 287 ITSLVKLSLRGCKRLTDKCISALFDGTSKL--------QLQELDLSNLP-----HLSDNG 333
T L+ GC+++ + ++ ++L + ELDLS P +L++
Sbjct: 275 -TQLIYFQAEGCRKIKELDVTHN----TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329
Query: 334 ILTL 337
+ L
Sbjct: 330 LTEL 333
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 53/280 (18%), Positives = 106/280 (37%), Gaps = 67/280 (23%)
Query: 67 LPGIQKLCLSVDYITDAMVGTIS--QGLVSLTHLDLRDAPLIE-PRITFDLTN------- 116
L +++L L+ D I+D IS L + L+L + ++T
Sbjct: 109 LTNLRELYLNEDNISD-----ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 117 ----SGLQQINQHGKLKHLSL----IRSQEFLITYFRRVNDLGILLMADKCASMESICLG 168
+ I L LSL I L S+
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISPL----------------ASLTSLHYFTAY 207
Query: 169 GFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDL-VFHDISA-TSLSLTHVCLRWCNLLT 226
++TD T + + + L L++ + ++TDL ++S T L + N ++
Sbjct: 208 V-NQITDI---TPVANMTRLNSLKIGN-NKITDLSPLANLSQLTWLEIGT------NQIS 256
Query: 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTV 286
+ I ++ T +K+L++ + + D + +++L QL L L+ + + + + +
Sbjct: 257 D--INAVKDLTKLKMLNVGSNQ-ISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVI--GG 309
Query: 287 ITSLVKLSLRGCKRLTDKCISALFDGTSKL-QLQELDLSN 325
+T+L L L +TD I L + L ++ D +N
Sbjct: 310 LTNLTTLFLSQNH-ITD--IRPL----ASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 54/287 (18%), Positives = 113/287 (39%), Gaps = 68/287 (23%)
Query: 60 NQIRP-SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG 118
NQI P + L + L +TD V T + L S+T L + + +
Sbjct: 13 NQIFPDADLAEGIRAVLQKASVTD--VVTQEE-LESITKLVVAGEKV-----------AS 58
Query: 119 LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGF 178
+Q I L++L+L +Q + D+ L + ++ +G ++TD
Sbjct: 59 IQGIEYLTNLEYLNLNGNQ---------ITDISPL---SNLVKLTNLYIGT-NKITDI-- 103
Query: 179 KTILHSCSNLYKLRVSHGTQLTDLVFHDISATSL-SLTHVCLRWCNLLTNHAIKSLASNT 237
+ L + +NL +L ++ ++D+ +L + + L + L++ + L++ T
Sbjct: 104 -SALQNLTNLRELYLNE-DNISDI----SPLANLTKMYSLNLGANHNLSD--LSPLSNMT 155
Query: 238 GIKVLDLRDCK----------------NLGD---EALRAISSLPQLKILLLDGSDISDVG 278
G+ L + + K +L E + ++SL L + I+D+
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215
Query: 279 VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 325
+ +T L L + ++TD +S L + + L L++
Sbjct: 216 P----VANMTRLNSLKIGNN-KITD--LSPLANLSQ---LTWLEIGT 252
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 46/286 (16%), Positives = 101/286 (35%), Gaps = 43/286 (15%)
Query: 60 NQIRPSI---LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPR------- 109
Q S+ +++L LS + ++ + L L+L L E
Sbjct: 23 KQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLDLESLST 81
Query: 110 -ITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLG 168
T DL N+ +Q++ ++ L + I+ + + ++I L
Sbjct: 82 LRTLDLNNNYVQELLVGPSIETLHAANNN---ISR----------VSCSRGQGKKNIYLA 128
Query: 169 GFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 228
++T S + L + ++ + F +++A+S +L H+ L++ N + +
Sbjct: 129 N-NKITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQY-NFIYD- 183
Query: 229 AIKSLASNTGIKVLDLRDCK--NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTV 286
+K +K LDL K +G E S + + L + + + +
Sbjct: 184 -VKGQVVFAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISLRNNKLVLIEKALRFS-- 236
Query: 287 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 332
+L LRG + F + ++Q + + L+
Sbjct: 237 -QNLEHFDLRGN-GFHCGTLRDFF--SKNQRVQTVAKQTVKKLTGQ 278
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 193 VSHGTQLTDLVFHD--ISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNL 250
+ T + + +A +L +T+ + S +G++ + +
Sbjct: 3 IQRPTPINQVFPDPGLANAVKQNLGK------QSVTD--LVSQKELSGVQNFNGDNSNI- 53
Query: 251 GDEALRAISSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRGCKRLTDKCISAL 309
++L + LK L L + ISD+ + L T L +LS+ + L + ++ +
Sbjct: 54 --QSLAGMQFFTNLKELHLSHNQISDLSPLKDL-----TKLEELSVNRNR-LKN--LNGI 103
Query: 310 FDGTSKLQLQELDLSN 325
L L L N
Sbjct: 104 ----PSACLSRLFLDN 115
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 53/336 (15%), Positives = 102/336 (30%), Gaps = 49/336 (14%)
Query: 27 LASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGI------QKLCLSVDYI 80
L+S K+ S+ + + ++ N+ S N + I PG KL L ++
Sbjct: 156 LSSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD 212
Query: 81 TDAMVGTISQGLVSLTHLDLRDAPL-IEPRITF--DLTNSGLQQIN-QHGKLKHLSLIRS 136
+ ++ T QGL L L E + GL + + +L +L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 137 Q--------EFLITYFRRVNDLGILLMADKCASMESICLGG--FCRVTDTGFKTI----- 181
+ ++ + + + + L F + K++
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 182 ----------LHSCSNLYKLRVSHGTQLTDLVFHDISATSL-SLTHVCLRWCNLLT-NHA 229
+L L +S L+ S SL ++ L + ++T +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 230 IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289
L ++ LD + SL L L + + ++S
Sbjct: 392 FLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSS 446
Query: 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 325
L L + G + + +F L LDLS
Sbjct: 447 LEVLKMAGN-SFQENFLPDIFTELR--NLTFLDLSQ 479
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 54/309 (17%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRD--------------APLIEPRITF 112
L +++L ++ + I + L +L HLDL + ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 113 DLTNSGLQQIN----QHGKLKHLSL---IRSQEFLITYFRRVNDLGIL----LMADKCAS 161
DL+ + + I + +L L+L S + T + + L + +
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 162 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ-LTDLVFHDISATSLS------- 213
+E + + + + + Y + LT++ + + ++
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 214 ---LTHVCLRWC--NLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILL 268
H+ L C +KSL K L K + LP L+ L
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSL------KRLTFTSNKGGN---AFSEVDLPSLEFLD 353
Query: 269 LDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN--L 326
L + +S G TSL L L + +S+ F G QL+ LD + L
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSSNFLGLE--QLEHLDFQHSNL 408
Query: 327 PHLSDNGIL 335
+S+ +
Sbjct: 409 KQMSEFSVF 417
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 40/281 (14%)
Query: 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPR--------ITFDLTNSG 118
+++L LS + ++ + L L+L L E T DL N+
Sbjct: 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91
Query: 119 LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGF 178
+Q++ ++ L + I+ + + ++I L ++T
Sbjct: 92 VQELLVGPSIETLHAANNN---ISR----------VSCSRGQGKKNIYLAN-NKITMLRD 137
Query: 179 KTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238
S + L + ++ + F +++A+S +L H+ L++ N + + +K
Sbjct: 138 LDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQY-NFIYD--VKGQVVFAK 192
Query: 239 IKVLDLRDCK--NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR 296
+K LDL K +G E S + + L + + + + +L LR
Sbjct: 193 LKTLDLSSNKLAFMGPE----FQSAAGVTWISLRNNKLVLIEKALRFS---QNLEHFDLR 245
Query: 297 GCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 337
G + F + ++Q + + L+
Sbjct: 246 GNG-FHCGTLRDFF--SKNQRVQTVAKQTVKKLTGQNEEEC 283
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.94 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.83 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.82 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.81 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.8 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.8 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.8 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.8 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.78 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.77 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.76 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.76 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.76 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.75 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.75 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.74 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.74 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.74 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.72 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.72 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.71 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.71 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.7 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.7 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.7 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.7 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.68 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.68 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.68 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.67 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.67 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.67 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.67 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.66 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.66 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.65 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.65 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.64 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.63 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.6 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.6 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.59 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.59 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.56 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.54 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.51 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.5 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.5 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.49 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.49 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.49 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.49 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.48 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.47 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.47 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.46 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.46 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.45 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.43 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.42 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.42 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.42 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.41 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.41 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.41 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.4 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.37 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.36 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.35 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.32 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.31 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.28 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.28 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.27 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.25 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.24 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.23 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.23 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.19 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.18 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.16 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.16 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.16 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.15 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.1 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.09 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.09 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.09 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.06 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.01 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.01 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.01 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.0 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.95 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.87 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.81 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.81 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.75 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.73 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.72 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.69 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.66 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.64 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.63 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.62 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.59 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.55 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.53 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.53 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.52 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.51 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.51 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.49 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.47 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.47 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.43 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.39 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.37 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.27 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.05 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.03 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.0 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.98 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.94 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.93 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.88 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.84 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.77 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.64 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.55 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.52 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.5 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.47 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.46 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.29 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.27 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.73 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.65 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.19 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 93.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 92.53 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-28 Score=247.35 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=186.7
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEec--------cCCCCCChHH
Q 011317 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDL--------RDCKNLGDEA 254 (488)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l--------~~~~~~~~~~ 254 (488)
.+++|++|++++|. +++..+..+...+++|++|++.+| +.+.++..+. .+++|+.|++ .++..+++.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 45677777777766 677666767777888888888875 4555555554 5888888888 3445677777
Q ss_pred HHhhc-CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecC-----CCCCCC----HHHHHHHhccCCCCCeeEEecC
Q 011317 255 LRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR-----GCKRLT----DKCISALFDGTSKLQLQELDLS 324 (488)
Q Consensus 255 ~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~~L~~L~l~ 324 (488)
+..+. .+++|++|.+..+.+++.++..+.. .+++|+.|++. +|..++ +.++..+...+ ++|++|+++
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~--~~L~~L~L~ 440 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC--KDLRRLSLS 440 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC--TTCCEEECC
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC--CCccEEeec
Confidence 76665 4889999988778888888887775 68999999998 677888 77887777666 899999997
Q ss_pred CCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCC
Q 011317 325 NLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR 404 (488)
Q Consensus 325 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~ 404 (488)
+ .+++.++..+...+++|+.|++++| .+++.++..++. .+++|++|++++|. +++.++..+.. .+++
T Consensus 441 ~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~--------~~~~L~~L~L~~n~-~~~~~~~~~~~-~l~~ 507 (594)
T 2p1m_B 441 G--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS--------GCDSLRKLEIRDCP-FGDKALLANAS-KLET 507 (594)
T ss_dssp S--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH--------HCTTCCEEEEESCS-CCHHHHHHTGG-GGGG
T ss_pred C--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh--------cCCCcCEEECcCCC-CcHHHHHHHHH-hCCC
Confidence 6 7899998888877999999999999 799999988876 79999999999999 68888876665 5899
Q ss_pred ccEEEecCCC-CHHHHHHHHhhCCCceeeccc
Q 011317 405 LRWLGVTGSV-NRDILDALARSRPFLNVACRG 435 (488)
Q Consensus 405 L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~ 435 (488)
|+.|++++|. ....+..+....|.+++....
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 9999999997 466777788889999876544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=248.60 Aligned_cols=214 Identities=17% Similarity=0.218 Sum_probs=131.6
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHH-hhCCCCcCEEeccCCCCCChHHHHhh-cCCCCccEEEeCC-----------Cc
Q 011317 207 ISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDG-----------SD 273 (488)
Q Consensus 207 ~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~-----------~~ 273 (488)
+...+++|++|++++|. +....+.. +..+++|+.|++++ .+.+.++..+ ..+++|++|++++ +.
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 34456677777777764 55555432 45677777777763 3444444444 3567777777773 36
Q ss_pred cchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecC---CCCCCCH----HHHHHHHhcCCCCCe
Q 011317 274 ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS---NLPHLSD----NGILTLATCRVPISE 346 (488)
Q Consensus 274 i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~---~~~~l~~----~~~~~l~~~~~~L~~ 346 (488)
+++.++..+.. .+++|++|++ +|+.+++.++..+...+ ++|++|+++ .|+.+++ .++..+...|++|+.
T Consensus 365 ~~~~~~~~l~~-~~~~L~~L~l-~~~~l~~~~~~~l~~~~--~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 365 VSQRGLIALAQ-GCQELEYMAV-YVSDITNESLESIGTYL--KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp CCHHHHHHHHH-HCTTCSEEEE-EESCCCHHHHHHHHHHC--CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred cCHHHHHHHHh-hCccCeEEEe-ecCCccHHHHHHHHhhC--CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 66666665555 5777777777 44567766666665544 677777775 2445553 456555556777777
Q ss_pred EeecCCC-CCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC-CHHHHHHHHh
Q 011317 347 LRVRQCP-LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDALAR 424 (488)
Q Consensus 347 L~l~~~~-~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 424 (488)
|++++|. .+++.++..++. .+++|++|++++|. +++.++..+.. .|++|++|++++|. ....+..+..
T Consensus 441 L~L~~~~~~l~~~~~~~~~~--------~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQ--------YSPNVRWMLLGYVG-ESDEGLMEFSR-GCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHH--------SCTTCCEEEECSCC-SSHHHHHHHHT-CCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred EEEecCCCCccHHHHHHHHH--------hCccceEeeccCCC-CCHHHHHHHHh-cCcccCeeeccCCCCcHHHHHHHHH
Confidence 7776653 266666666665 66777777777766 67666665544 46777777777775 4444555555
Q ss_pred hCCCce-eeccccc
Q 011317 425 SRPFLN-VACRGEE 437 (488)
Q Consensus 425 ~~~~l~-~~~~~~~ 437 (488)
..|.++ +...+|.
T Consensus 511 ~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR 524 (592)
T ss_dssp HCSSCCEEEEESCB
T ss_pred hcCccCeeECcCCc
Confidence 566554 3344443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=233.65 Aligned_cols=380 Identities=17% Similarity=0.217 Sum_probs=253.3
Q ss_pred HHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcc-------cCCCCCCCcEEEeecCccChhHHHHHHhcCC
Q 011317 21 FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQI-------RPSILPGIQKLCLSVDYITDAMVGTISQGLV 93 (488)
Q Consensus 21 ~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (488)
...++..+| +++.|+++..+.......... .|... ....+++|++|+|+++.+++..+..+...++
T Consensus 65 ~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 137 (592)
T 3ogk_B 65 PDRLSRRFP-NLRSLKLKGKPRAAMFNLIPE------NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137 (592)
T ss_dssp HHHHHHHCT-TCSEEEEECSCGGGGGTCSCT------TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG
T ss_pred hHHHHHhCC-CCeEEEecCCcchhhcccccc------cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc
Confidence 345667788 799999976543221111100 11110 0113677888888877777777776665555
Q ss_pred C-ccEEeccCCCCCCCccccccChHHHHhhh-cCCCccEEEccccccccc----------------------ccccccCh
Q 011317 94 S-LTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLI----------------------TYFRRVND 149 (488)
Q Consensus 94 ~-L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~----------------------~~~~~~~~ 149 (488)
+ |++|++++|. .++..++..+. .|++|++|+++.+.-... ..+..++.
T Consensus 138 ~~L~~L~L~~~~--------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 138 DDLETLKLDKCS--------GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp GGCCEEEEESCE--------EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred ccCcEEECcCCC--------CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 5 8888887773 34454555443 677777777765431000 01122334
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCH------------------------------------------------HHHHHH
Q 011317 150 LGILLMADKCASMESICLGGFCRVTD------------------------------------------------TGFKTI 181 (488)
Q Consensus 150 ~~l~~l~~~~~~L~~L~l~~~~~~~~------------------------------------------------~~~~~~ 181 (488)
..+..+...+++|+.|++++|. +.. ..++.+
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 288 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred HHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence 5566666677778877777642 111 112222
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHh-hCCCCcCEEeccC----------CCCC
Q 011317 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGIKVLDLRD----------CKNL 250 (488)
Q Consensus 182 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~----------~~~~ 250 (488)
...+++|++|++++|. +++..+..+...+++|++|++.+ .+.+.++..+ ..+++|++|++++ |+.+
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 3345667777777766 66666666677888888888883 4555555554 3688888888884 7777
Q ss_pred ChHHHHhhc-CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC---CCCCCH----HHHHHHhccCCCCCeeEEe
Q 011317 251 GDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG---CKRLTD----KCISALFDGTSKLQLQELD 322 (488)
Q Consensus 251 ~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~~L~~L~ 322 (488)
++.++..+. .+++|++|+++.+.+++.++..+.. .+++|+.|++.+ |+.+++ .++..+..++ ++|++|+
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~--~~L~~L~ 442 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--KKLRRFA 442 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC--TTCCEEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC--CCCCEEE
Confidence 777666543 6888888888777888888877776 688888888873 556664 4666666655 7888888
Q ss_pred cCCCC-CCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccC
Q 011317 323 LSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPY 401 (488)
Q Consensus 323 l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 401 (488)
+++|. .+++.++..+...+++|+.|++++| .+++.++..+.. .+++|++|++++|. +++.++..+.. .
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~--------~~~~L~~L~l~~n~-l~~~~~~~~~~-~ 511 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR--------GCPNLQKLEMRGCC-FSERAIAAAVT-K 511 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT--------CCTTCCEEEEESCC-CBHHHHHHHHH-H
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh--------cCcccCeeeccCCC-CcHHHHHHHHH-h
Confidence 87764 3778888888877888888888888 788888887776 78888888888888 88877776654 4
Q ss_pred CCCccEEEecCCC-CHHHHHHHHhhCCCceeec
Q 011317 402 FPRLRWLGVTGSV-NRDILDALARSRPFLNVAC 433 (488)
Q Consensus 402 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~ 433 (488)
+++|++|++++|. ....+..+....|.+.+..
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEE
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEE
Confidence 8888888888885 3445556666777776653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=230.95 Aligned_cols=319 Identities=18% Similarity=0.206 Sum_probs=249.5
Q ss_pred CCCCCcEEEeecCc--cChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccc-----
Q 011317 66 ILPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQE----- 138 (488)
Q Consensus 66 ~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~----- 138 (488)
.+++|++|+++++. ++...+..+...+++|++|++++|. .++. ....+..+++|++|.+..+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--------~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV--------PLEK-LATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS--------CHHH-HHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC--------cHHH-HHHHHhcCCcceEcccccccCccchh
Confidence 47899999999764 7777788887789999999999883 1222 222345777777777543211
Q ss_pred --------------cccc-cccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHH
Q 011317 139 --------------FLIT-YFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLV 203 (488)
Q Consensus 139 --------------~~~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 203 (488)
.... ++.......+..+...+++|++|++++|. +++..+..+...+++|++|+++++ +.+..
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~ 329 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAG 329 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHH
T ss_pred hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHH
Confidence 0000 12233334444455568999999999975 888888888889999999999987 56777
Q ss_pred HHHHHhcCCCCCEEEe--------cCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeC--C
Q 011317 204 FHDISATSLSLTHVCL--------RWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLD--G 271 (488)
Q Consensus 204 ~~~~~~~~~~L~~L~l--------~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~--~ 271 (488)
+..+...+++|++|++ ..+..+++.++..+. .+++|+.|.+.. ..+++..+..+. .+++|+.|+++ +
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 7778888999999999 445678888887776 599999996654 678888887776 68999999999 3
Q ss_pred ----Cccc----hhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCC
Q 011317 272 ----SDIS----DVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 343 (488)
Q Consensus 272 ----~~i~----~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 343 (488)
+.++ +.++..+.. .+++|+.|++++ .+++.++..+...+ ++|++|++++| .+++.++..+...+++
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~--~~L~~L~L~~~-~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYA--KKMEMLSVAFA-GDSDLGMHHVLSGCDS 482 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHC--TTCCEEEEESC-CSSHHHHHHHHHHCTT
T ss_pred CCCcccccCCchhhHHHHHHh-hCCCccEEeecC--cccHHHHHHHHHhc--hhccEeeccCC-CCcHHHHHHHHhcCCC
Confidence 4677 667776666 699999999976 68998888876645 89999999996 6899999888778999
Q ss_pred CCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 344 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 344 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
|+.|++++| .+++.++..+.. .+++|+.|++++|+ ++..++..+.. .+|+|+...+....
T Consensus 483 L~~L~L~~n-~~~~~~~~~~~~--------~l~~L~~L~l~~~~-~~~~~~~~l~~-~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 483 LRKLEIRDC-PFGDKALLANAS--------KLETMRSLWMSSCS-VSFGACKLLGQ-KMPKLNVEVIDERG 542 (594)
T ss_dssp CCEEEEESC-SCCHHHHHHTGG--------GGGGSSEEEEESSC-CBHHHHHHHHH-HCTTEEEEEECSSS
T ss_pred cCEEECcCC-CCcHHHHHHHHH--------hCCCCCEEeeeCCC-CCHHHHHHHHH-hCCCCEEEEecCCC
Confidence 999999999 669999888776 78999999999998 69999988855 58999877776554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=221.85 Aligned_cols=378 Identities=20% Similarity=0.243 Sum_probs=248.4
Q ss_pred ccceeeeeecccccchhhHHHHHHHhhhccceeeecccccccc--ceecCCCCCCCCCCCcccCCCCCCCcEEEeecCcc
Q 011317 3 GSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMV--TELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYI 80 (488)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 80 (488)
.|+.|.++. ..+.......++..+| +++.|++++..-... ..+. .....+++|++|+++++.+
T Consensus 4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~------------~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 4 DIQSLDIQC--EELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDIS------------SALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEES--CCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHH------------HHHHTCTTCCEEECTTCCC
T ss_pred cceehhhhh--cccCchhHHHHHhhcC-CccEEEccCCCCCHHHHHHHH------------HHHHhCCCcCEEeCCCCcC
Confidence 466677754 4456666777788888 999999985432110 0110 0023368899999998888
Q ss_pred ChhHHHHHHhcCC----CccEEeccCCCCCCCccccccChHH----HHhhhcCCCccEEEcccccccccccccccChHHH
Q 011317 81 TDAMVGTISQGLV----SLTHLDLRDAPLIEPRITFDLTNSG----LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGI 152 (488)
Q Consensus 81 ~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~~~~~~~~~~----l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 152 (488)
++..+..+...++ +|++|++++|. +++.+ ...+..+++|++|++++ +.+++.++
T Consensus 69 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~---------i~~~~~~~l~~~l~~~~~L~~L~Ls~---------n~i~~~~~ 130 (461)
T 1z7x_W 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCC---------LTGAGCGVLSSTLRTLPTLQELHLSD---------NLLGDAGL 130 (461)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSC---------CBGGGHHHHHHHTTSCTTCCEEECCS---------SBCHHHHH
T ss_pred ChHHHHHHHHHHhhCCCceeEEEccCCC---------CCHHHHHHHHHHHccCCceeEEECCC---------CcCchHHH
Confidence 8887877777676 69999999884 55433 34566888999999963 33555555
Q ss_pred HHHHHh----CCCCCEEEEcCCCCCCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHh----cCCCCCEEEecC
Q 011317 153 LLMADK----CASMESICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISA----TSLSLTHVCLRW 221 (488)
Q Consensus 153 ~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~ 221 (488)
..+... .++|++|++++| .++..+ +...+..+++|++|+++++. +++.+...+.. ..++|++|++++
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 554442 457889998885 666533 34445567888999888765 55555554443 356888888888
Q ss_pred CCCCCHHHH----HHhhCCCCcCEEeccCCCCCChHHHHhhc-----CCCCccEEEeCCCccchhHHHHHHh--hcCCCc
Q 011317 222 CNLLTNHAI----KSLASNTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRL--TVITSL 290 (488)
Q Consensus 222 ~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L 290 (488)
| .+...+. ..+..+++|++|+++++ .+.+.+...+. .+++|++|++++|.+++.+...+.. ..+++|
T Consensus 209 n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 209 C-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp S-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred C-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence 6 4554332 23446788888888886 56665544332 4788888888888888776433322 137888
Q ss_pred cEEecCCCCCCCHHHHHHHhcc--CCCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 291 VKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 291 ~~L~l~~~~~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
++|+++++ .+++.+...+... ...++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..++.
T Consensus 287 ~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 363 (461)
T 1z7x_W 287 KELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQ 363 (461)
T ss_dssp CEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHH
T ss_pred ceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHH
Confidence 88888886 4766655544332 11258888888885 5765543332 335788888888888 788877776665
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC-CHHHHHHHHhh
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV-NRDILDALARS 425 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~ 425 (488)
.+.. .+++|++|++++|. +++.+...+.. ..+++|++|++++|. ....+..+...
T Consensus 364 ~l~~----~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 364 GLGQ----PGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421 (461)
T ss_dssp HHTS----TTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred HHcC----CCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHH
Confidence 3321 26788888888886 88754443322 127888888888885 44555555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=215.49 Aligned_cols=387 Identities=23% Similarity=0.255 Sum_probs=259.9
Q ss_pred Cccceeeeeecccccchh---hHHHHHHHhhhccceeeeccccccc--cceecCCCCCCCCCCCcccCCCCCCCcEEEee
Q 011317 2 QGSKALILMFDISLFLRH---NFARVWALASEKLTSLEIGYISSVM--VTELLSPNVEPHQSPNQIRPSILPGIQKLCLS 76 (488)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~---~~~~~~~~lp~~l~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 76 (488)
++|+.|.++.+. +... .+...+..+| +|+.|++++..-.. ...+.... ....++|++|+++
T Consensus 28 ~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l-----------~~~~~~L~~L~L~ 93 (461)
T 1z7x_W 28 QQCQVVRLDDCG--LTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGL-----------QTPSCKIQKLSLQ 93 (461)
T ss_dssp TTCSEEEEESSC--CCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTT-----------CSTTCCCCEEECT
T ss_pred CCccEEEccCCC--CCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHH-----------hhCCCceeEEEcc
Confidence 567888886543 3433 3344455556 89999988543211 11110000 1112279999999
Q ss_pred cCccChhHHHHHH---hcCCCccEEeccCCCCCCCccccccChHHHHhhh-----cCCCccEEEcccccccccccccccC
Q 011317 77 VDYITDAMVGTIS---QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-----QHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 77 ~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
++.+++.....+. ..+++|++|++++|. +++.++..+. ..++|++|+++.+. .....
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~---------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------l~~~~ 158 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNL---------LGDAGLQLLCEGLLDPQCRLEKLQLEYCS------LSAAS 158 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSB---------CHHHHHHHHHHHHTSTTCCCCEEECTTSC------CBGGG
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCc---------CchHHHHHHHHHHhcCCCcceEEECCCCC------CCHHH
Confidence 8888875433333 478899999999983 6666666554 25679999997542 11222
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHH----hCCCCceEEecCCCCCCHHH---HHHHHhcCCCCCEEEecC
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILH----SCSNLYKLRVSHGTQLTDLV---FHDISATSLSLTHVCLRW 221 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 221 (488)
...+......+++|++|+++++ .+.+.++..+.. ..++|++|++++|. ++..+ +......+++|++|++++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccC
Confidence 2233444456899999999985 677666655544 35689999999875 44333 334455788999999998
Q ss_pred CCCCCHHHHHHhh-----CCCCcCEEeccCCCCCChHHHH----hhcCCCCccEEEeCCCccchhHHHHHHhh---cCCC
Q 011317 222 CNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRLT---VITS 289 (488)
Q Consensus 222 ~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~~ 289 (488)
+ .+.+.+...+. .+++|++|++++| .+++.+.. .+..+++|++|++++|.+++.+...+... ..++
T Consensus 237 n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 237 N-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp S-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred C-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 5 67666655443 4789999999986 67776533 34468999999999998888777666551 2368
Q ss_pred ccEEecCCCCCCCHHHHH---HHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc----CCCCCeEeecCCCCCCHHHHHH
Q 011317 290 LVKLSLRGCKRLTDKCIS---ALFDGTSKLQLQELDLSNLPHLSDNGILTLATC----RVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~---~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
|+.|++++|. +++.+.. .....+ ++|++|+++++ .+++.++..+... .++|+.|++++| .+++.++..
T Consensus 315 L~~L~L~~n~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCSHFSSVLAQN--RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHHHHHHC--SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ceeeEcCCCC-CchHHHHHHHHHHhhC--CCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 9999999875 6654332 222233 78999999985 7887777666542 568999999999 889877777
Q ss_pred HHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCCC----HHHHHHHHhhCCCceee
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSVN----RDILDALARSRPFLNVA 432 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~l~~~ 432 (488)
++..+. .+++|++|++++|+ +++.++..+.. ...++|+.|.+.++.. .+.+..+....|.+++.
T Consensus 390 l~~~l~-----~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 390 LAATLL-----ANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHH-----HCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHH-----hCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 665433 68899999999997 88887776654 1234788888887753 34556677788887763
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=187.72 Aligned_cols=247 Identities=19% Similarity=0.185 Sum_probs=157.4
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHH---HhCCCCceEEecCCC--CCC---HHHHH---HHHhcCCCCCEEEecCCCCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTIL---HSCSNLYKLRVSHGT--QLT---DLVFH---DISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~---~~~~~---~~~~~~~~L~~L~l~~~~~~~ 226 (488)
.+++|++|+++++ .++..+...+. ..+++|++|+++++. .++ ...+. .....+++|++|+++++ .+.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4566666666663 55554444332 245666666666542 111 11222 22345677777777774 444
Q ss_pred HH----HHHHhhCCCCcCEEeccCCCCCChHHHHhhc----CC---------CCccEEEeCCCccchhHHHHHHh--hcC
Q 011317 227 NH----AIKSLASNTGIKVLDLRDCKNLGDEALRAIS----SL---------PQLKILLLDGSDISDVGVSYLRL--TVI 287 (488)
Q Consensus 227 ~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~i~~~~~~~l~~--~~~ 287 (488)
.. ....+..+++|++|++++| .+++.+...+. .+ ++|++|++++|.+++.++..+.. ..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 42 2224456778888888775 45444433333 23 88899999988887665553221 148
Q ss_pred CCccEEecCCCCCCCHHHHHHHhc--cCCCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 288 TSLVKLSLRGCKRLTDKCISALFD--GTSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 288 ~~L~~L~l~~~~~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
++|++|++++| .+++.++..++. -..+++|++|+|+++ .+++.+...+ ...+++|+.|++++| .+++.+...
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHH
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHH
Confidence 89999999987 588776554432 112388999999984 6876555444 346789999999999 799887777
Q ss_pred HHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 414 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 414 (488)
++..+.. +.+++|++|++++|. ++..++..+.. ..+++|++|++++|.
T Consensus 264 l~~~l~~---~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSK---LENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHT---CSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhh---ccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 6653310 038899999999998 88854433322 137999999999986
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-21 Score=184.90 Aligned_cols=245 Identities=15% Similarity=0.126 Sum_probs=177.8
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHH---HhcCCCCCEEEecCC--CCCC---HHHHH----HhhCCCCcCEEeccCCCC
Q 011317 182 LHSCSNLYKLRVSHGTQLTDLVFHDI---SATSLSLTHVCLRWC--NLLT---NHAIK----SLASNTGIKVLDLRDCKN 249 (488)
Q Consensus 182 ~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~--~~~~---~~~~~----~l~~~~~L~~L~l~~~~~ 249 (488)
+..+++|++|+++++. ++......+ ...+++|++|+++++ +.+. ..++. .+..+++|++|+++++ .
T Consensus 28 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A 105 (386)
T ss_dssp HHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred HhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-c
Confidence 4568999999999875 666655544 347899999999986 2222 22332 2458999999999996 5
Q ss_pred CChHH----HHhhcCCCCccEEEeCCCccchhHHHHHHh--hcC---------CCccEEecCCCCCCCHHHHHHH---hc
Q 011317 250 LGDEA----LRAISSLPQLKILLLDGSDISDVGVSYLRL--TVI---------TSLVKLSLRGCKRLTDKCISAL---FD 311 (488)
Q Consensus 250 ~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~---------~~L~~L~l~~~~~l~~~~~~~l---~~ 311 (488)
+...+ ...+..+++|++|++++|.++..+...+.. ..+ ++|++|++++|. +++.++..+ ..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHH
Confidence 66643 345678999999999999998766655544 013 899999999974 775555432 22
Q ss_pred cCCCCCeeEEecCCCCCCCHHHHHHHHh----cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 312 GTSKLQLQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 312 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.+ ++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+...++..+. .+++|++|++++|.
T Consensus 185 ~~--~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~-----~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 185 SH--RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALK-----SWPNLRELGLNDCL 255 (386)
T ss_dssp HC--TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGG-----GCTTCCEEECTTCC
T ss_pred hC--CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHc-----cCCCcCEEECCCCC
Confidence 33 79999999995 888877655543 7899999999999 798887777765443 78999999999998
Q ss_pred CCCHHHHHHhhc----cCCCCccEEEecCCCCHH-----HHHHHHhhCCCce-eeccccccc
Q 011317 388 GITQLAFRWLKK----PYFPRLRWLGVTGSVNRD-----ILDALARSRPFLN-VACRGEELG 439 (488)
Q Consensus 388 ~i~~~~~~~l~~----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~l~-~~~~~~~~~ 439 (488)
+++.+...+.. ..+++|++|++++|.... ....+....|.++ +...++.+.
T Consensus 256 -i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 256 -LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred -CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 99876554433 238999999999997543 3344445567765 445555443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-22 Score=187.44 Aligned_cols=282 Identities=19% Similarity=0.234 Sum_probs=171.8
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.+... ...+++|++|++++|. ++. ++.+..+++|++|+++++. .
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~---------i~~--~~~~~~l~~L~~L~l~~n~------i 122 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK---------ITD--ISALQNLTNLRELYLNEDN------I 122 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCC--CGGGTTCTTCSEEECTTSC------C
T ss_pred hhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc---------ccC--chHHcCCCcCCEEECcCCc------c
Confidence 336778888887766665322 3467788888888773 332 2346677788888886442 1
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+.. ...+++|+.|++++|..+.... . +..+++|++|+++++....... ...+++|++|+++++ .
T Consensus 123 ~~~~~------~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~ 188 (347)
T 4fmz_A 123 SDISP------LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYN-Q 188 (347)
T ss_dssp CCCGG------GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTS-C
T ss_pred cCchh------hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCC-c
Confidence 12211 2457778888887764443221 1 3567778888887765322211 446678888888775 3
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 304 (488)
+.... .+..+++|+.|+++++ .+..... +..+++|++|++++|.++.... +. .+++|+.|++++|. ++..
T Consensus 189 l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~-l~~~ 258 (347)
T 4fmz_A 189 IEDIS--PLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSP--LA--NLSQLTWLEIGTNQ-ISDI 258 (347)
T ss_dssp CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSC-CCCC
T ss_pred ccccc--cccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcc--hh--cCCCCCEEECCCCc-cCCC
Confidence 33221 2557778888888775 3333222 5677788888888876665433 22 47788888887764 4321
Q ss_pred HHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
..+ ..+++|++|++++| .++... . ...+++|+.|++++| .+++.....+. .+++|++|+++
T Consensus 259 --~~~---~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~~~l~---------~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 --NAV---KDLTKLKMLNVGSN-QISDIS--V-LNNLSQLNSLFLNNN-QLGNEDMEVIG---------GLTNLTTLFLS 319 (347)
T ss_dssp --GGG---TTCTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSS-CCCGGGHHHHH---------TCTTCSEEECC
T ss_pred --hhH---hcCCCcCEEEccCC-ccCCCh--h-hcCCCCCCEEECcCC-cCCCcChhHhh---------ccccCCEEEcc
Confidence 111 12277888888875 454321 1 235778888888887 66665555555 57778888888
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+ ++.... +. .+++|++|++++|.
T Consensus 320 ~n~-l~~~~~--~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRP--LA--SLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGG--GG--GCTTCSEESSSCC-
T ss_pred CCc-cccccC--hh--hhhccceeehhhhc
Confidence 887 554322 33 37788888887775
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=173.84 Aligned_cols=251 Identities=18% Similarity=0.247 Sum_probs=171.7
Q ss_pred CCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHhhCCCCcC
Q 011317 162 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH-AIKSLASNTGIK 240 (488)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~ 240 (488)
++.+++++ ..+....+..+. .++++.|+++++.. ...... ...+++|++|+++++ .+... ....+..+++|+
T Consensus 49 ~~~l~l~~-~~~~~~~~~~~~--~~~l~~L~l~~n~l-~~~~~~--~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTG-KNLHPDVTGRLL--SQGVIAFRCPRSFM-DQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTT-CBCCHHHHHHHH--HTTCSEEECTTCEE-CSCCCS--CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCS
T ss_pred heeecccc-ccCCHHHHHhhh--hccceEEEcCCccc-cccchh--hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCC
Confidence 55666655 244433222211 15666666665431 100000 124567777777775 35544 233455778888
Q ss_pred EEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCC-Ce
Q 011317 241 VLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL-QL 318 (488)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~-~L 318 (488)
+|++++| .+.+.....++.+++|++|++++| .+++.++..+.. .+++|++|++++|..+++.++......+ + +|
T Consensus 122 ~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l--~~~L 197 (336)
T 2ast_B 122 NLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHV--SETI 197 (336)
T ss_dssp EEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHS--CTTC
T ss_pred EEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhc--ccCC
Confidence 8888876 466666667777888888888888 677766665444 5888888888887668776665555444 7 88
Q ss_pred eEEecCCCC-CCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 319 QELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 319 ~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
++|++++|. .+++.++......+++|+.|++++|..+++.++..+. .+++|++|++++|..+++.++..+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------QLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------GCTTCCEEECTTCTTCCGGGGGGG
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---------CCCCCCEeeCCCCCCCCHHHHHHH
Confidence 888888865 6777777766667889999999888557777666655 578899999999877777777666
Q ss_pred hccCCCCccEEEecCCCCHHHHHHHHhhCCCceeecc
Q 011317 398 KKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACR 434 (488)
Q Consensus 398 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 434 (488)
.. +++|+.|++++|.....+..+....|.+++.+.
T Consensus 269 ~~--~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 269 GE--IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp GG--CTTCCEEECTTSSCTTCHHHHHHHSTTSEESCC
T ss_pred hc--CCCCCEEeccCccCHHHHHHHHhhCcceEEecc
Confidence 65 889999999998767677778778888887644
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-19 Score=168.29 Aligned_cols=198 Identities=18% Similarity=0.251 Sum_probs=97.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.+..+..+...+++|++|++++| .+++.....++.+++|++|++++ +..
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~---------~l~~~~~~~l~~~~~L~~L~L~~--------~~~ 154 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNLVRLNLSG--------CSG 154 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCHHHHHHHTTCTTCSEEECTT--------CBS
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc---------ccCHHHHHHHhcCCCCCEEECCC--------CCC
Confidence 4555566665555555444444445556666666555 24444444555555555555532 223
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCC-CCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCS-NLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
+++..+......+++|++|++++|..+++.++..++..++ +|++|++++|. .+++..+......+++|++|++++|..
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 4444444444445555555555543555444444445555 55555555543 344444444444455555555555433
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYL 282 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l 282 (488)
+++.....+..+++|++|++++|..+.+.++..+..+++|+.|++++| +++.++..+
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 433333344445555555555544444444444444555555555554 444444333
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=177.15 Aligned_cols=295 Identities=19% Similarity=0.205 Sum_probs=211.4
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|++|+++++.+... ..+ ..+++|++|++++|. +++. ..+..+++|++|+++++. ..
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~-~~~~~L~~L~l~~n~---------i~~~--~~~~~l~~L~~L~L~~n~------i~ 101 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGI-EYLTNLEYLNLNGNQ---------ITDI--SPLSNLVKLTNLYIGTNK------IT 101 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC---------CCCC--GGGTTCTTCCEEECCSSC------CC
T ss_pred hcccccEEEEeCCccccc--hhh-hhcCCccEEEccCCc---------cccc--hhhhcCCcCCEEEccCCc------cc
Confidence 478999999998776652 223 479999999999984 4432 227889999999997653 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+. ....+++|++|+++++ .+..... +..+++|+.|+++++........ ...+++|++|+++++. +
T Consensus 102 ~~~------~~~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~ 167 (347)
T 4fmz_A 102 DIS------ALQNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-V 167 (347)
T ss_dssp CCG------GGTTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred Cch------HHcCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-c
Confidence 221 1356899999999995 5554322 46799999999999865543221 5678999999999964 3
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
.... .+..+++|+.|+++++ .+.... .+..+++|+.|++++|.+..... +. .+++|+.|++++|. ++...
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~-l~~~~ 237 (347)
T 4fmz_A 168 KDVT--PIANLTDLYSLSLNYN-QIEDIS--PLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNK-ITDLS 237 (347)
T ss_dssp CCCG--GGGGCTTCSEEECTTS-CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSC-CCCCG
T ss_pred CCch--hhccCCCCCEEEccCC-cccccc--cccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCc-cCCCc
Confidence 3222 2678999999999996 444332 36789999999999998776543 33 48999999999975 44221
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 385 (488)
. .. .+++|++|+++++ .++.. .. ...+++|+.|++++| .+++. ..+. .+++|+.|++++
T Consensus 238 ~---~~--~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~~~~---------~l~~L~~L~L~~ 296 (347)
T 4fmz_A 238 P---LA--NLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSN-QISDI--SVLN---------NLSQLNSLFLNN 296 (347)
T ss_dssp G---GT--TCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--GGGG---------GCTTCSEEECCS
T ss_pred c---hh--cCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCC-ccCCC--hhhc---------CCCCCCEEECcC
Confidence 1 22 2389999999996 55532 11 236899999999999 66653 2222 789999999999
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce
Q 011317 386 CGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN 430 (488)
Q Consensus 386 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 430 (488)
|. ++......+.. +++|++|++++|....... ....+.++
T Consensus 297 n~-l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 297 NQ-LGNEDMEVIGG--LTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp SC-CCGGGHHHHHT--CTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred Cc-CCCcChhHhhc--cccCCEEEccCCccccccC--hhhhhccc
Confidence 98 88777777775 9999999999997432222 33455553
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=181.76 Aligned_cols=212 Identities=23% Similarity=0.248 Sum_probs=98.3
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|+.|+++++ .+.... . +..+++|++|+++++......+ ...+++|++|+++++ .+... ..+..++
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~--~~l~~l~ 243 (466)
T 1o6v_A 175 NLTTLERLDISSN-KVSDIS--V-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN-QLKDI--GTLASLT 243 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCC--GGGGGCT
T ss_pred cCCCCCEEECcCC-cCCCCh--h-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCC-Ccccc--hhhhcCC
Confidence 3555555555553 233211 1 2345555666555543211111 234555666666553 22221 2344555
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
+|+.|+++++. +.... .+..+++|+.|++++|.+..... +. .+++|+.|++++|. ++... .+ . .+++
T Consensus 244 ~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~-l~~~~--~~-~--~l~~ 310 (466)
T 1o6v_A 244 NLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQ-LEDIS--PI-S--NLKN 310 (466)
T ss_dssp TCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSC-CSCCG--GG-G--GCTT
T ss_pred CCCEEECCCCc-cccch--hhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCc-ccCch--hh-c--CCCC
Confidence 66666665542 22211 14455666666666655443222 22 35666666666543 22110 01 1 1156
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 318 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 318 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
|++|++++| .+++... ...+++|+.|++++| .+++. ..+. .+++|+.|++++|. +++... +
T Consensus 311 L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l~---------~l~~L~~L~l~~n~-l~~~~~--~ 371 (466)
T 1o6v_A 311 LTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--SSLA---------NLTNINWLSAGHNQ-ISDLTP--L 371 (466)
T ss_dssp CSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--GGGT---------TCTTCCEEECCSSC-CCBCGG--G
T ss_pred CCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--hhhc---------cCCCCCEEeCCCCc-cCccch--h
Confidence 666666664 3332211 124566666666666 44432 1111 55666666666665 443221 2
Q ss_pred hccCCCCccEEEecCCC
Q 011317 398 KKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 398 ~~~~~~~L~~L~l~~~~ 414 (488)
. .+++|+.|++++|.
T Consensus 372 ~--~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 372 A--NLTRITQLGLNDQA 386 (466)
T ss_dssp T--TCTTCCEEECCCEE
T ss_pred h--cCCCCCEEeccCCc
Confidence 2 36666666666653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-21 Score=193.28 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=117.3
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhh---CCCCcCEEeccCCCCCCh---------HHHHhhc--CCCCccEEEeCCCccch
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLA---SNTGIKVLDLRDCKNLGD---------EALRAIS--SLPQLKILLLDGSDISD 276 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~---------~~~~~l~--~~~~L~~L~l~~~~i~~ 276 (488)
+++|++|+++++ .+.......+. ..++|+.|+++++..... .....+. ..++|+.|++++|.+..
T Consensus 211 ~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 211 NTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred cceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 357888888874 45444433333 347888888876532211 0001111 34689999999998876
Q ss_pred hHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCC
Q 011317 277 VGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 356 (488)
Q Consensus 277 ~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 356 (488)
.....+.. +++|+.|++++|. ++......+ ..+++|++|+++++ .++......+ ..+++|+.|++++| .++
T Consensus 290 ~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~ 360 (455)
T 3v47_A 290 LLKSVFSH--FTDLEQLTLAQNE-INKIDDNAF---WGLTHLLKLNLSQN-FLGSIDSRMF-ENLDKLEVLDLSYN-HIR 360 (455)
T ss_dssp ECTTTTTT--CTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSS-CCCEECGGGG-TTCTTCCEEECCSS-CCC
T ss_pred cchhhccc--CCCCCEEECCCCc-ccccChhHh---cCcccCCEEECCCC-ccCCcChhHh-cCcccCCEEECCCC-ccc
Confidence 54444444 8999999999864 542211111 12289999999995 6653322222 26899999999999 665
Q ss_pred HHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 357 DTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
......+. .+++|++|++++|. ++......+. .+++|++|++++|+
T Consensus 361 ~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQSFL---------GLPNLKELALDTNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTTTT---------TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccChhhcc---------ccccccEEECCCCc-cccCCHhHhc--cCCcccEEEccCCC
Confidence 43332332 78999999999997 7754433344 48999999999876
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-22 Score=203.68 Aligned_cols=231 Identities=16% Similarity=0.147 Sum_probs=103.9
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|+.|+++++ .+.. ++..+..+++|++|+++++.. .... ......+++|++|+++++......+...+..++
T Consensus 276 ~l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 276 CFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANKF-ENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TCTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTCCC-SBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred cccCCCEEeccCC-ccCC--CChhhcccccCCEEECccCCc-CcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3566666666663 3331 111123456666666665542 1110 112334566666666664222111111234566
Q ss_pred CcCEEeccCCCCCChHH--HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 238 GIKVLDLRDCKNLGDEA--LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
+|++|+++++ .+.... ...+..+++|++|++++|.+.......+.. +++|+.|++++|. ++......... .+
T Consensus 351 ~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~~~--~l 424 (606)
T 3t6q_A 351 NLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTR-LKVKDAQSPFQ--NL 424 (606)
T ss_dssp TCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT--CTTCSEEECTTCC-EECCTTCCTTT--TC
T ss_pred cCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC--CccCCeEECCCCc-CCCcccchhhh--Cc
Confidence 6666666654 333322 233455666666666666554333222323 5666666666543 21100000001 12
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHH---HHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV---IALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|++|+++++ .++......+. .+++|+.|++++| .+++..+ ..+. .+++|++|++++|. ++..
T Consensus 425 ~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~ 491 (606)
T 3t6q_A 425 HLLKVLNLSHS-LLDISSEQLFD-GLPALQHLNLQGN-HFPKGNIQKTNSLQ---------TLGRLEILVLSFCD-LSSI 491 (606)
T ss_dssp TTCCEEECTTC-CCBTTCTTTTT-TCTTCCEEECTTC-BCGGGEECSSCGGG---------GCTTCCEEECTTSC-CCEE
T ss_pred ccCCEEECCCC-ccCCcCHHHHh-CCCCCCEEECCCC-CCCccccccchhhc---------cCCCccEEECCCCc-cCcc
Confidence 56666666663 33321111111 3566666666666 3332111 0011 45556666666654 4433
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
....+.. +++|+.|++++|.
T Consensus 492 ~~~~~~~--l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 492 DQHAFTS--LKMMNHVDLSHNR 511 (606)
T ss_dssp CTTTTTT--CTTCCEEECCSSC
T ss_pred Chhhhcc--ccCCCEEECCCCc
Confidence 2223332 5566666666554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-21 Score=192.52 Aligned_cols=301 Identities=18% Similarity=0.136 Sum_probs=186.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++++.|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++.+. ...
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENI---------VSAVEPGAFNNLFNLRTLGLRSNR------LKL 94 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CCS
T ss_pred CCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCc---------cCEeChhhhhCCccCCEEECCCCc------CCc
Confidence 4678888888777765433333 368888888888873 444344557788888888886542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... .+..+++|++|+++++ .+... ....+..+++|++|+++++.. ..... .....+++|++|+++++ .+.
T Consensus 95 ~~~~----~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~ 165 (477)
T 2id5_A 95 IPLG----VFTGLSNLTKLDISEN-KIVIL-LDYMFQDLYNLKSLEVGDNDL-VYISH-RAFSGLNSLEQLTLEKC-NLT 165 (477)
T ss_dssp CCTT----SSTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEEECCTTC-CEECT-TSSTTCTTCCEEEEESC-CCS
T ss_pred cCcc----cccCCCCCCEEECCCC-ccccC-ChhHccccccCCEEECCCCcc-ceeCh-hhccCCCCCCEEECCCC-cCc
Confidence 2221 1235788888888884 55433 122235678888888887642 21110 12345678888888885 444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
......+..+++|+.|+++++ .+.......+..+++|+.|++++|............ ..+|+.|++++|. ++....
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~ 241 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSITHCN-LTAVPY 241 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEEESSC-CCSCCH
T ss_pred ccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccccc--CccccEEECcCCc-ccccCH
Confidence 444445667888888888885 455554556677888888888887443322222222 4578888888864 442221
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
..+ . .+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|+.|++++|
T Consensus 242 ~~~-~--~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N 306 (477)
T 2id5_A 242 LAV-R--HLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGG-QLAVVEPYAFR---------GLNYLRVLNVSGN 306 (477)
T ss_dssp HHH-T--TCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSS-CCSEECTTTBT---------TCTTCCEEECCSS
T ss_pred HHh-c--CccccCeeECCCC-cCCccChhhc-cccccCCEEECCCC-ccceECHHHhc---------CcccCCEEECCCC
Confidence 122 1 1278888888884 5553222222 25788888888888 55543222222 6788888888888
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++......+. .+++|+.|++++|+
T Consensus 307 ~-l~~~~~~~~~--~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 Q-LTTLEESVFH--SVGNLETLILDSNP 331 (477)
T ss_dssp C-CSCCCGGGBS--CGGGCCEEECCSSC
T ss_pred c-CceeCHhHcC--CCcccCEEEccCCC
Confidence 6 6654433343 37888888888876
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=174.47 Aligned_cols=298 Identities=20% Similarity=0.268 Sum_probs=188.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|++|+++.+.+..... ...+++|++|++++|. ++.. ..+..+++|++|+++++. ..
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~---------l~~~--~~~~~l~~L~~L~l~~n~------l~ 147 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQ---------ITDI--DPLKNLTNLNRLELSSNT------IS 147 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCCC--GGGTTCTTCSEEEEEEEE------EC
T ss_pred ccccCCEEECCCCccccChh---hcCCCCCCEEECCCCC---------CCCC--hHHcCCCCCCEEECCCCc------cC
Confidence 36677777777665554322 2367777777777763 3221 226677777777776542 11
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+.. ...+++|+.|++++ .+... .. +..+++|+.|+++++.. .... ....+++|++|+++++. +
T Consensus 148 ~~~~------~~~l~~L~~L~l~~--~~~~~--~~-~~~l~~L~~L~l~~n~l-~~~~---~l~~l~~L~~L~l~~n~-l 211 (466)
T 1o6v_A 148 DISA------LSGLTSLQQLSFGN--QVTDL--KP-LANLTTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQ-I 211 (466)
T ss_dssp CCGG------GTTCTTCSEEEEEE--SCCCC--GG-GTTCTTCCEEECCSSCC-CCCG---GGGGCTTCSEEECCSSC-C
T ss_pred CChh------hccCCcccEeecCC--cccCc--hh-hccCCCCCEEECcCCcC-CCCh---hhccCCCCCEEEecCCc-c
Confidence 1211 24577788888764 22211 11 35678889998887753 2211 24577899999998863 3
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
.... .+..+++|+.|+++++ .+... ..+..+++|+.|++++|.+..... +. .+++|+.|++++|. ++...
T Consensus 212 ~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~-l~~~~ 281 (466)
T 1o6v_A 212 SDIT--PLGILTNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQ-ISNIS 281 (466)
T ss_dssp CCCG--GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSC-CCCCG
T ss_pred cccc--cccccCCCCEEECCCC-Ccccc--hhhhcCCCCCEEECCCCccccchh--hh--cCCCCCEEECCCCc-cCccc
Confidence 3221 2567889999999886 34432 356788999999999987765432 33 48899999999875 43211
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 385 (488)
.+ . .+++|++|+++++ .++.... ...+++|+.|++++| .+++... + . .+++|+.|++++
T Consensus 282 --~~-~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--~-~--------~l~~L~~L~l~~ 340 (466)
T 1o6v_A 282 --PL-A--GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP--V-S--------SLTKLQRLFFYN 340 (466)
T ss_dssp --GG-T--TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG--G-G--------GCTTCCEEECCS
T ss_pred --cc-c--CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCchh--h-c--------cCccCCEeECCC
Confidence 12 1 2389999999985 5553221 236899999999999 5554322 2 2 789999999999
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce-eeccccc
Q 011317 386 CGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN-VACRGEE 437 (488)
Q Consensus 386 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 437 (488)
|. +++. ..+. .+++|+.|++++|....... ....+.++ +...++.
T Consensus 341 n~-l~~~--~~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 341 NK-VSDV--SSLA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SC-CCCC--GGGT--TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred Cc-cCCc--hhhc--cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 97 6653 3454 48999999999996432222 34445553 4444443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-21 Score=201.57 Aligned_cols=207 Identities=17% Similarity=0.102 Sum_probs=113.1
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCC
Q 011317 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 263 (488)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 263 (488)
.+++|++|+++++. ++. +......+++|++|+++++ .+.......+..+++|+.|+++++..........+..+++
T Consensus 276 ~l~~L~~L~l~~n~-l~~--lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSE--LPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TCTTCSEEECTTSC-CSC--CCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred cccCCCEEeccCCc-cCC--CChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 35566666666543 221 1111234556666666664 3332222334466667777766653222223334556777
Q ss_pred ccEEEeCCCccchhH--HHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC
Q 011317 264 LKILLLDGSDISDVG--VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR 341 (488)
Q Consensus 264 L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 341 (488)
|++|++++|.+.... ...+. .+++|+.|++++|. ++......+ . .+++|++|+++++ .++..........+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLR--NLSHLQSLNLSYNE-PLSLKTEAF-K--ECPQLELLDLAFT-RLKVKDAQSPFQNL 424 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTT--TCTTCCEEECCSCS-CEEECTTTT-T--TCTTCSEEECTTC-CEECCTTCCTTTTC
T ss_pred CCEEECCCCccccccCcchhcc--cCCCCCEEECCCCc-CCcCCHHHh-c--CCccCCeEECCCC-cCCCcccchhhhCc
Confidence 777777777665433 12222 36777777777753 321100111 1 1277888888874 33322111112257
Q ss_pred CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH---HHhhccCCCCccEEEecCCC
Q 011317 342 VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF---RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~---~~l~~~~~~~L~~L~l~~~~ 414 (488)
++|+.|++++| .++......+. .+++|++|++++|. +++..+ ..+. .+++|+.|++++|.
T Consensus 425 ~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~~~~~~~~--~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 425 HLLKVLNLSHS-LLDISSEQLFD---------GLPALQHLNLQGNH-FPKGNIQKTNSLQ--TLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEEECTTC-CCBTTCTTTTT---------TCTTCCEEECTTCB-CGGGEECSSCGGG--GCTTCCEEECTTSC
T ss_pred ccCCEEECCCC-ccCCcCHHHHh---------CCCCCCEEECCCCC-CCccccccchhhc--cCCCccEEECCCCc
Confidence 88888888888 44432222222 68899999999997 554221 2233 38899999999986
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-22 Score=209.67 Aligned_cols=155 Identities=15% Similarity=0.071 Sum_probs=70.5
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGT 313 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~ 313 (488)
+++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|++++|.... +..+..+
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l---- 465 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEGEIPQELMYV---- 465 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGC----
T ss_pred cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccCcCCHHHcCC----
Confidence 344555555443 222222333445555666666655444322222333 5566666665543111 1111111
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
++|++|+++++ .++......+. .+++|+.|++++| .+++.....+. .+++|++|++++|. ++...
T Consensus 466 --~~L~~L~L~~N-~l~~~~p~~l~-~l~~L~~L~L~~N-~l~~~~p~~~~---------~l~~L~~L~L~~N~-l~~~~ 530 (768)
T 3rgz_A 466 --KTLETLILDFN-DLTGEIPSGLS-NCTNLNWISLSNN-RLTGEIPKWIG---------RLENLAILKLSNNS-FSGNI 530 (768)
T ss_dssp --TTCCEEECCSS-CCCSCCCGGGG-GCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CEEEC
T ss_pred --CCceEEEecCC-cccCcCCHHHh-cCCCCCEEEccCC-ccCCcCChHHh---------cCCCCCEEECCCCc-ccCcC
Confidence 55666666663 33311111111 4566666666666 33322111122 45566666666665 44322
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011317 394 FRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~ 414 (488)
...+.. +++|+.|++++|.
T Consensus 531 p~~l~~--l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 531 PAELGD--CRSLIWLDLNTNL 549 (768)
T ss_dssp CGGGGG--CTTCCEEECCSSE
T ss_pred CHHHcC--CCCCCEEECCCCc
Confidence 233333 6666666666653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-20 Score=183.39 Aligned_cols=307 Identities=14% Similarity=0.111 Sum_probs=177.3
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccC-hHHHHhhhcCCCccEEEcccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLT-NSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..++|++|+++++.+.......+ ..+++|++|++++|. +. ......+..+++|++|+++++. .
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------~~~~i~~~~~~~l~~L~~L~Ls~n~------l 91 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQT---------PGLVIRNNTFRGLSSLIILKLDYNQ------F 91 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCS---------TTCEECTTTTTTCTTCCEEECTTCT------T
T ss_pred CCCccCEEEecCCccCcCChhHh-ccCccccEEECcCCc---------ccceECcccccccccCCEEeCCCCc------c
Confidence 34789999999988876434334 479999999999984 32 2123457789999999997653 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHH-HHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFK-TILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
..+.... ...+++|++|+++++ .+....+. ..+..+++|++|+++++.. .......+...+++|++|+++++
T Consensus 92 ~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n- 164 (455)
T 3v47_A 92 LQLETGA----FNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFN- 164 (455)
T ss_dssp CEECTTT----TTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTC-
T ss_pred CccChhh----ccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCC-
Confidence 2221111 245899999999995 66643232 2245689999999998763 22211223567899999999985
Q ss_pred CCCHHHHHHhh--CCCCcCEEeccCCCCCChHHH--------HhhcCCCCccEEEeCCCccchhHHHHHHhh-cCCCccE
Q 011317 224 LLTNHAIKSLA--SNTGIKVLDLRDCKNLGDEAL--------RAISSLPQLKILLLDGSDISDVGVSYLRLT-VITSLVK 292 (488)
Q Consensus 224 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-~~~~L~~ 292 (488)
.+.......+. ..++|+.|+++++. +..... ..+..+++|++|++++|.+.......+... ..++|+.
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred cccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 33322222232 23678888888753 322211 122356788888888888776655544430 1245555
Q ss_pred EecCCCCC-----------------------------------CCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHH
Q 011317 293 LSLRGCKR-----------------------------------LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 337 (488)
Q Consensus 293 L~l~~~~~-----------------------------------l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l 337 (488)
|+++++.. ++...... . ..+++|++|+++++ .++......+
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~--~~l~~L~~L~Ls~n-~l~~~~~~~~ 319 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-F--SHFTDLEQLTLAQN-EINKIDDNAF 319 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-T--TTCTTCCEEECTTS-CCCEECTTTT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh-c--ccCCCCCEEECCCC-cccccChhHh
Confidence 55544321 22100000 0 11256666666663 4442211111
Q ss_pred HhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 338 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 338 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. .+++|+.|++++| .++......+. .+++|++|++++|. ++......+.. +++|++|++++|.
T Consensus 320 ~-~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 382 (455)
T 3v47_A 320 W-GLTHLLKLNLSQN-FLGSIDSRMFE---------NLDKLEVLDLSYNH-IRALGDQSFLG--LPNLKELALDTNQ 382 (455)
T ss_dssp T-TCTTCCEEECCSS-CCCEECGGGGT---------TCTTCCEEECCSSC-CCEECTTTTTT--CTTCCEEECCSSC
T ss_pred c-CcccCCEEECCCC-ccCCcChhHhc---------CcccCCEEECCCCc-ccccChhhccc--cccccEEECCCCc
Confidence 1 4566666666666 44332211121 56667777777765 55433333433 6677777777664
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-21 Score=203.00 Aligned_cols=359 Identities=17% Similarity=0.146 Sum_probs=225.2
Q ss_pred CCccceeeeeecccccchhhHHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCcc
Q 011317 1 MQGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYI 80 (488)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 80 (488)
+.+|+.|.+..+...-..+. ..++ +|+.|++++......... ...+++|++|+++++.+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~-----~~l~-~L~~L~Ls~n~l~~~~~~---------------l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDV-----SRCV-NLEFLDVSSNNFSTGIPF---------------LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CTTCCEEECCSSEEESCCBC-----TTCT-TCCEEECCSSCCCSCCCB---------------CTTCCSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcccccCCc-----ccCC-cCCEEECcCCcCCCCCcc---------------cccCCCCCEEECcCCcC
Confidence 35688888876433211111 3445 888888875432111111 24478999999999888
Q ss_pred ChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCC
Q 011317 81 TDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCA 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 160 (488)
.......+ ..+++|++|++++|. ++.. ++.. .+++|++|+++.+.-.. .+.. .+...++
T Consensus 236 ~~~~~~~l-~~l~~L~~L~Ls~n~---------l~~~-~~~~-~l~~L~~L~L~~n~l~~-----~ip~----~~~~~~~ 294 (768)
T 3rgz_A 236 SGDFSRAI-STCTELKLLNISSNQ---------FVGP-IPPL-PLKSLQYLSLAENKFTG-----EIPD----FLSGACD 294 (768)
T ss_dssp CSCHHHHT-TTCSSCCEEECCSSC---------CEES-CCCC-CCTTCCEEECCSSEEEE-----SCCC----CSCTTCT
T ss_pred CCcccHHH-hcCCCCCEEECCCCc---------ccCc-cCcc-ccCCCCEEECcCCccCC-----ccCH----HHHhhcC
Confidence 86655555 479999999999985 2221 1111 68899999997653210 1111 1123368
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC-Cc
Q 011317 161 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GI 239 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L 239 (488)
+|++|+++++ .+... ++..+..+++|++|+++++......+. .....+++|++|+++++. +.......+..++ +|
T Consensus 295 ~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 295 TLTGLDLSGN-HFYGA-VPPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASL 370 (768)
T ss_dssp TCSEEECCSS-EEEEC-CCGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTC
T ss_pred cCCEEECcCC-cCCCc-cchHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCC
Confidence 9999999985 44322 122246789999999998753211111 124577899999999863 2211111233444 89
Q ss_pred CEEeccCCCCCChHHHHhhcC--CCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCC
Q 011317 240 KVLDLRDCKNLGDEALRAISS--LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTS 314 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~ 314 (488)
+.|+++++ .+.......+.. +++|++|++++|.++......+.. +++|+.|++++|. ++ +..+..+
T Consensus 371 ~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~~~p~~l~~l----- 441 (768)
T 3rgz_A 371 LTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNY-LSGTIPSSLGSL----- 441 (768)
T ss_dssp SEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSE-EESCCCGGGGGC-----
T ss_pred cEEEccCC-CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCCc-ccCcccHHHhcC-----
Confidence 99999986 343333334443 788999999999777544444444 8999999999875 32 2333222
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 394 (488)
++|+.|+++++ .++......+. .+++|+.|++++| .++......+. .+++|++|++++|. ++....
T Consensus 442 -~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~~p~~l~---------~l~~L~~L~L~~N~-l~~~~p 507 (768)
T 3rgz_A 442 -SKLRDLKLWLN-MLEGEIPQELM-YVKTLETLILDFN-DLTGEIPSGLS---------NCTNLNWISLSNNR-LTGEIP 507 (768)
T ss_dssp -TTCCEEECCSS-CCCSCCCGGGG-GCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CCSCCC
T ss_pred -CCCCEEECCCC-cccCcCCHHHc-CCCCceEEEecCC-cccCcCCHHHh---------cCCCCCEEEccCCc-cCCcCC
Confidence 89999999995 55432222222 5899999999999 55532222222 78999999999998 665444
Q ss_pred HHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce
Q 011317 395 RWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN 430 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 430 (488)
..+.. +++|+.|++++|.....+.......+.++
T Consensus 508 ~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 508 KWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred hHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 55554 89999999999974322222233445544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=175.61 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=89.5
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHH---HhhcCCCCccEEEeCCCccchhHH-HHHHhh
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEAL---RAISSLPQLKILLLDGSDISDVGV-SYLRLT 285 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~~~-~~l~~~ 285 (488)
..++|+.|+++++ .+...+...+..+++|+.|+++++ .+..... ..+..+++|++|++++|.++.... .....
T Consensus 308 ~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~- 384 (549)
T 2z81_A 308 LLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL- 384 (549)
T ss_dssp HSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-
T ss_pred hcccceEEEeccC-ccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhh-
Confidence 3456777777764 333322222335777777777775 4444332 224567777777777776665432 11122
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 286 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
.+++|+.|++++|. ++. +.... ..+++|++|+++++ .++.-.. ...++|+.|++++| .++.. ..
T Consensus 385 ~l~~L~~L~Ls~N~-l~~--lp~~~--~~~~~L~~L~Ls~N-~l~~l~~----~~~~~L~~L~Ls~N-~l~~~-----~~ 448 (549)
T 2z81_A 385 TLKNLTSLDISRNT-FHP--MPDSC--QWPEKMRFLNLSST-GIRVVKT----CIPQTLEVLDVSNN-NLDSF-----SL 448 (549)
T ss_dssp GCTTCCEEECTTCC-CCC--CCSCC--CCCTTCCEEECTTS-CCSCCCT----TSCTTCSEEECCSS-CCSCC-----CC
T ss_pred cCCCCCEEECCCCC-Ccc--CChhh--cccccccEEECCCC-Ccccccc----hhcCCceEEECCCC-Chhhh-----cc
Confidence 37777777777753 431 11111 11256777777764 3431100 01245666666666 44321 11
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++. +.... .+++|+.|++++|.
T Consensus 449 --------~l~~L~~L~Ls~N~-l~~--ip~~~--~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 449 --------FLPRLQELYISRNK-LKT--LPDAS--LFPVLLVMKISRNQ 484 (549)
T ss_dssp --------CCTTCCEEECCSSC-CSS--CCCGG--GCTTCCEEECCSSC
T ss_pred --------cCChhcEEECCCCc-cCc--CCCcc--cCccCCEEecCCCc
Confidence 55666666666665 442 22221 25666666666664
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=175.15 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=67.6
Q ss_pred cCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHH
Q 011317 259 SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 337 (488)
Q Consensus 259 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l 337 (488)
..+++|++|++++|.++......+. .+++|+.|++++|. ++. ..+...... +++|++|+++++ .++.......
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~~~~--l~~L~~L~Ls~N-~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQ-LKELSKIAEMTTQ--MKSLQQLDISQN-SVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSC-CCBHHHHHHHHTT--CTTCCEEECCSS-CCBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCc-cCccccchHHHhh--CCCCCEEECCCC-cCCcccccch
Confidence 3566777777777766653333333 36677777777654 442 122221222 267777777763 4432111111
Q ss_pred HhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCC-CCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 338 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG-SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 338 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
...+++|+.|++++| .+++.. .. .+ ++|+.|++++|. ++... ..+. .+++|++|++++|.
T Consensus 395 ~~~l~~L~~L~Ls~N-~l~~~~----~~--------~l~~~L~~L~Ls~N~-l~~ip-~~~~--~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSN-ILTDTI----FR--------CLPPRIKVLDLHSNK-IKSIP-KQVV--KLEALQELNVASNQ 455 (520)
T ss_dssp CCCCTTCCEEECCSS-CCCGGG----GG--------SCCTTCCEEECCSSC-CCCCC-GGGG--GCTTCCEEECCSSC
T ss_pred hccCccCCEEECcCC-CCCcch----hh--------hhcccCCEEECCCCc-ccccc-hhhh--cCCCCCEEECCCCc
Confidence 124566777777766 444211 11 22 466666666665 55211 1122 26666666666664
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-20 Score=190.34 Aligned_cols=302 Identities=15% Similarity=0.117 Sum_probs=167.0
Q ss_pred CCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCC--c----------------------cccccChHHHHhhh
Q 011317 68 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEP--R----------------------ITFDLTNSGLQQIN 123 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~----------------------~~~~~~~~~l~~l~ 123 (488)
.+|++|+++++.+...........+++|+.+.+........ . ....++. ..+.+.
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-~~~~~~ 282 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD-DIVKFH 282 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG-GGGSCG
T ss_pred ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc-cccccc
Confidence 47999999998887666666666888888877742210000 0 0001122 122255
Q ss_pred cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHH
Q 011317 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLV 203 (488)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 203 (488)
.+++|+.|+++++. ...+. ....+++|+.|++++| .+.. ++.+ .+++|++|+++++......
T Consensus 283 ~l~~L~~L~l~~~~------~~~l~------~l~~~~~L~~L~l~~n-~l~~--lp~~--~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 283 CLANVSAMSLAGVS------IKYLE------DVPKHFKWQSLSIIRC-QLKQ--FPTL--DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp GGTTCSEEEEESCC------CCCCC------CCCTTCCCSEEEEESC-CCSS--CCCC--CCSSCCEEEEESCSSCEEC-
T ss_pred cCCCCCEEEecCcc------chhhh------hccccccCCEEEcccc-cCcc--cccC--CCCccceeeccCCcCccch-
Confidence 67788888886543 12222 1134677888888875 3322 2232 5778888888776433321
Q ss_pred HHHHHhcCCCCCEEEecCCCCCCHHH--HHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHH-H
Q 011317 204 FHDISATSLSLTHVCLRWCNLLTNHA--IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV-S 280 (488)
Q Consensus 204 ~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~ 280 (488)
....+++|++|+++++ .+.... ...+..+++|+.|+++++. +.... ..+..+++|+.|++++|.+..... .
T Consensus 345 ---~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 345 ---KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp ---CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred ---hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCCccCCccChh
Confidence 1235677888888774 332110 1234567778888887753 33222 345567777777777776554332 2
Q ss_pred HHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHH
Q 011317 281 YLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV 360 (488)
Q Consensus 281 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 360 (488)
.+. .+++|+.|++++|. ++......+ . .+++|++|+++++ .+++..+......+++|+.|++++| .++....
T Consensus 419 ~~~--~l~~L~~L~l~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 490 (606)
T 3vq2_A 419 AFL--SLEKLLYLDISYTN-TKIDFDGIF-L--GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW 490 (606)
T ss_dssp TTT--TCTTCCEEECTTSC-CEECCTTTT-T--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT
T ss_pred hhh--ccccCCEEECcCCC-CCccchhhh-c--CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccCh
Confidence 222 36777777777764 221100011 1 1267777777774 4433211111224677777777777 5543222
Q ss_pred HHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 361 IALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 361 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+. .+++|++|++++|. ++......+.. +++|+.|++++|.
T Consensus 491 ~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 491 GVFD---------TLHRLQLLNMSHNN-LLFLDSSHYNQ--LYSLSTLDCSFNR 532 (606)
T ss_dssp TTTT---------TCTTCCEEECCSSC-CSCEEGGGTTT--CTTCCEEECTTSC
T ss_pred hhhc---------ccccCCEEECCCCc-CCCcCHHHccC--CCcCCEEECCCCc
Confidence 2222 56777777777776 55543334433 6777777777775
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-20 Score=190.00 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=102.7
Q ss_pred CCCCcCEEeccCCCCCChHH--HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 235 SNTGIKVLDLRDCKNLGDEA--LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
.+++|+.|+++++ .+.... ...+..+++|++|++++|.+...... +. .+++|+.|++++|. ++.........
T Consensus 345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~~~- 418 (570)
T 2z63_A 345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSN-LKQMSEFSVFL- 418 (570)
T ss_dssp BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSE-EESCTTSCTTT-
T ss_pred cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCc-cccccchhhhh-
Confidence 4677888888775 343322 34456788899999988866543322 22 47888888888764 22110000111
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
.+++|++|++++| .++...... ...+++|+.|++++| .+++..+..... .+++|++|++++|. ++..
T Consensus 419 -~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~p~~~~--------~l~~L~~L~l~~n~-l~~~ 485 (570)
T 2z63_A 419 -SLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGN-SFQENFLPDIFT--------ELRNLTFLDLSQCQ-LEQL 485 (570)
T ss_dssp -TCTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCT--------TCTTCCEEECTTSC-CCEE
T ss_pred -cCCCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCC-cCccccchhhhh--------cccCCCEEECCCCc-cccC
Confidence 2278888888885 443221111 125788888888888 443211111111 67788888888886 6654
Q ss_pred HHHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce-eeccccc
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN-VACRGEE 437 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 437 (488)
....+.. +++|++|++++|.-...........+.++ +...+++
T Consensus 486 ~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 486 SPTAFNS--LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Chhhhhc--ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 3344443 78888888888753222222223344443 4444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-19 Score=180.25 Aligned_cols=304 Identities=16% Similarity=0.115 Sum_probs=200.9
Q ss_pred HHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCC
Q 011317 26 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL 105 (488)
Q Consensus 26 ~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 105 (488)
..+|..++.|++++..-..... .....+++|++|+|+.+.+.......+ ..+++|++|+|++|.
T Consensus 28 ~~~~~~l~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKTLNQ--------------DEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNR- 91 (477)
T ss_dssp SCCCTTCSEEECCSSCCCEECT--------------TTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-
T ss_pred CCCCCCCcEEECCCCccceECH--------------hHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCc-
Confidence 3456678888877432111100 013447899999999887776433333 378999999999984
Q ss_pred CCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhC
Q 011317 106 IEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSC 185 (488)
Q Consensus 106 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
++......+..+++|++|+++.+. ...+... ....+++|+.|+++++ .+....... +..+
T Consensus 92 --------l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l 151 (477)
T 2id5_A 92 --------LKLIPLGVFTGLSNLTKLDISENK------IVILLDY----MFQDLYNLKSLEVGDN-DLVYISHRA-FSGL 151 (477)
T ss_dssp --------CCSCCTTSSTTCTTCCEEECTTSC------CCEECTT----TTTTCTTCCEEEECCT-TCCEECTTS-STTC
T ss_pred --------CCccCcccccCCCCCCEEECCCCc------cccCChh----HccccccCCEEECCCC-ccceeChhh-ccCC
Confidence 444333446789999999997643 2222111 1246899999999984 555432222 3568
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc
Q 011317 186 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265 (488)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 265 (488)
++|++|+++++.. +... ......+++|+.|+++++ .+.......+..+++|+.|+++++........ ......+|+
T Consensus 152 ~~L~~L~l~~n~l-~~~~-~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 227 (477)
T 2id5_A 152 NSLEQLTLEKCNL-TSIP-TEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLT 227 (477)
T ss_dssp TTCCEEEEESCCC-SSCC-HHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCS
T ss_pred CCCCEEECCCCcC-cccC-hhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCc-ccccCcccc
Confidence 9999999998753 2222 123457889999999985 44333333456889999999998755443332 223455999
Q ss_pred EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCC
Q 011317 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPIS 345 (488)
Q Consensus 266 ~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 345 (488)
+|++++|.++......+.. +++|+.|+++++. ++......+ ..+++|++|+++++ .++......+. .+++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~ 299 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRH--LVYLRFLNLSYNP-ISTIEGSML---HELLRLQEIQLVGG-QLAVVEPYAFR-GLNYLR 299 (477)
T ss_dssp EEEEESSCCCSCCHHHHTT--CTTCCEEECCSSC-CCEECTTSC---TTCTTCCEEECCSS-CCSEECTTTBT-TCTTCC
T ss_pred EEECcCCcccccCHHHhcC--ccccCeeECCCCc-CCccChhhc---cccccCCEEECCCC-ccceECHHHhc-CcccCC
Confidence 9999999888666555555 9999999999864 542111111 12389999999994 66643222222 689999
Q ss_pred eEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 346 ELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 346 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.|++++| .++......+. .+++|+.|++++|+
T Consensus 300 ~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 300 VLNVSGN-QLTTLEESVFH---------SVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSCCCGGGBS---------CGGGCCEEECCSSC
T ss_pred EEECCCC-cCceeCHhHcC---------CCcccCEEEccCCC
Confidence 9999999 66542221111 67899999999988
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-20 Score=190.86 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|++++| .++......+ ..+++|+.|++++| .+++..+.... ..+++|++|++++|. ++.....
T Consensus 424 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~--------~~l~~L~~L~Ls~n~-l~~~~~~ 491 (606)
T 3vq2_A 424 EKLLYLDISYT-NTKIDFDGIF-LGLTSLNTLKMAGN-SFKDNTLSNVF--------ANTTNLTFLDLSKCQ-LEQISWG 491 (606)
T ss_dssp TTCCEEECTTS-CCEECCTTTT-TTCTTCCEEECTTC-EEGGGEECSCC--------TTCTTCCEEECTTSC-CCEECTT
T ss_pred ccCCEEECcCC-CCCccchhhh-cCCCCCCEEECCCC-cCCCcchHHhh--------ccCCCCCEEECCCCc-CCccChh
Confidence 66777777764 3332111111 24677777777777 44331111111 178899999999997 7654444
Q ss_pred HhhccCCCCccEEEecCCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSVN 415 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~~ 415 (488)
.+.. +++|++|++++|..
T Consensus 492 ~~~~--l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 492 VFDT--LHRLQLLNMSHNNL 509 (606)
T ss_dssp TTTT--CTTCCEEECCSSCC
T ss_pred hhcc--cccCCEEECCCCcC
Confidence 4543 89999999999964
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=173.30 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCeeEEecCCCCCCCHHHHHHH--HhcCCCCCeEeecCCCCCCHHHH-HHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTL--ATCRVPISELRVRQCPLIGDTSV-IALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|++|++++ +.++....... ...+++|+.|++++| .++.... ..... .+++|++|++++|. ++.
T Consensus 334 ~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~--------~l~~L~~L~Ls~N~-l~~- 401 (549)
T 2z81_A 334 KSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILL--------TLKNLTSLDISRNT-FHP- 401 (549)
T ss_dssp TTCCEEECCS-SCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGG--------GCTTCCEEECTTCC-CCC-
T ss_pred ccccEEEccC-CccccccccchhhhhccccCcEEEccCC-cccccccchhhhh--------cCCCCCEEECCCCC-Ccc-
Confidence 7788888877 35665433221 225677888888877 5554332 12222 67788888888886 552
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+..... .+++|++|++++|.
T Consensus 402 -lp~~~~-~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 402 -MPDSCQ-WPEKMRFLNLSSTG 421 (549)
T ss_dssp -CCSCCC-CCTTCCEEECTTSC
T ss_pred -CChhhc-ccccccEEECCCCC
Confidence 111111 36788888888775
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=164.96 Aligned_cols=298 Identities=16% Similarity=0.117 Sum_probs=188.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 131 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------LSS 131 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCC
T ss_pred cccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCC---------CCcCCHHHhcCCCCCCEEECCCCc------cCc
Confidence 6788888888777665333333 368888899988874 444333456778888888887543 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ++..+++|++|+++++ .+..... ..+..+++|++|+++++.. +..+ ...+++|+.|+++++ .+.
T Consensus 132 l~~~----~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~----~~~l~~L~~L~l~~n-~l~ 199 (390)
T 3o6n_A 132 LPRG----IFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYN-LLS 199 (390)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEEECCSSCC-SBCC----GGGCTTCSEEECCSS-CCS
T ss_pred CCHH----HhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEEECCCCcC-Cccc----cccccccceeecccc-ccc
Confidence 2221 1245788899998884 5543311 2235678899999887653 2221 345678899988874 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
.+...++|+.|+++++ .+..... ...++|+.|++++|.+++.. .+. .+++|+.|+++++. ++....
T Consensus 200 -----~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~Ls~n~-l~~~~~ 265 (390)
T 3o6n_A 200 -----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDTA--WLL--NYPGLVEVDLSYNE-LEKIMY 265 (390)
T ss_dssp -----EEECCSSCSEEECCSS-CCCEEEC---CCCSSCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSC-CCEEES
T ss_pred -----ccCCCCcceEEECCCC-eeeeccc---cccccccEEECCCCCCcccH--HHc--CCCCccEEECCCCc-CCCcCh
Confidence 2345678899999885 3433211 24578999999998777642 233 48899999998864 442211
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
..+ ..+++|++|+++++ .++.... ....+++|+.|++++| .++... ..+. .+++|++|++++|
T Consensus 266 ~~~---~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~-~~~~---------~l~~L~~L~L~~N 328 (390)
T 3o6n_A 266 HPF---VKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVE-RNQP---------QFDRLENLYLDHN 328 (390)
T ss_dssp GGG---TTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCG-GGHH---------HHTTCSEEECCSS
T ss_pred hHc---cccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecC-cccc---------ccCcCCEEECCCC
Confidence 111 12288999999984 5553211 1135789999999998 554221 1122 4678999999999
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCCC-HHHHHHHHhhCCCc
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSVN-RDILDALARSRPFL 429 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~l 429 (488)
. ++... +. .+++|+.|++++|+- -.....+....+..
T Consensus 329 ~-i~~~~---~~--~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 329 S-IVTLK---LS--THHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp C-CCCCC---CC--TTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred c-cceeC---ch--hhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 8 65432 22 488999999999873 34444454444443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-19 Score=182.23 Aligned_cols=309 Identities=16% Similarity=0.125 Sum_probs=140.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++.+.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 159 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNG---------LSSTKLGTQVQLENLQELLLSNNK------IQA 159 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSC---------CSCCCCCSSSCCTTCCEEECCSSC------CCC
T ss_pred CCCCCEEECCCCccCccChhHc-cccCCCCEEECCCCc---------ccccCchhhcccccCCEEEccCCc------ccc
Confidence 5666666666554443211112 246666666666653 222222334556666666665331 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHh--cCCCCCEEEecCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISA--TSLSLTHVCLRWCNL 224 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 224 (488)
+....+. ...+++|+.|+++++ .+..... ..+..+++|+.|.+.++. +.......+.. ..++|++|+++++ .
T Consensus 160 ~~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n-~ 233 (680)
T 1ziw_A 160 LKSEELD--IFANSSLKKLELSSN-QIKEFSP-GCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNS-Q 233 (680)
T ss_dssp BCHHHHG--GGTTCEESEEECTTC-CCCCBCT-TGGGGSSEECEEECTTCC-CHHHHHHHHHHHHTTSCCCEEECTTS-C
T ss_pred cCHHHhh--ccccccccEEECCCC-cccccCh-hhhhhhhhhhhhhccccc-cChhhHHHHHHHhhhccccEEEccCC-c
Confidence 2111110 012456666666663 3332211 112345555555555443 22222222211 2356677776664 2
Q ss_pred CCHHHHHHhhCC--CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC
Q 011317 225 LTNHAIKSLASN--TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 302 (488)
Q Consensus 225 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 302 (488)
+.......+..+ ++|+.|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|+++++..-.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT--CTTCCEEECTTCBCCC
T ss_pred ccccChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcC--CCCccEEeccchhhhc
Confidence 222111122222 34777777664 344444445566677777777776555433222322 5666666665532111
Q ss_pred HHHHHHHh-----ccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC------------------------
Q 011317 303 DKCISALF-----DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP------------------------ 353 (488)
Q Consensus 303 ~~~~~~l~-----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~------------------------ 353 (488)
......+. .-..+++|++|+++++ .++......+ ..+++|+.|++++|.
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 11111110 0011255666666553 3332111111 135555555555441
Q ss_pred ---CCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH-HHHHhhccCCCCccEEEecCCC
Q 011317 354 ---LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL-AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 354 ---~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++......+ ..+++|+.|++++|. ++.. ....+. .+++|+.|++++|.
T Consensus 389 ~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~-l~~~~~~~~~~--~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 389 TKNKISKIESDAF---------SWLGHLEVLDLGLNE-IGQELTGQEWR--GLENIFEIYLSYNK 441 (680)
T ss_dssp TTSCCCEECTTTT---------TTCTTCCEEECCSSC-CEEECCSGGGT--TCTTCCEEECCSCS
T ss_pred CCCCCCeEChhhh---------hCCCCCCEEeCCCCc-CccccCccccc--CcccccEEecCCCC
Confidence 2221111111 157788888888876 4321 112333 37788888888775
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-20 Score=188.39 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred CcCEEeccCCCCCChHHHHhhc-------CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHh
Q 011317 238 GIKVLDLRDCKNLGDEALRAIS-------SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 310 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 310 (488)
+|+.|+++++ .+.......+. .+++|++|++++|.++......+. .+++|+.|+++++. ++.-... ..
T Consensus 403 ~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~-l~~i~~~-~~ 477 (636)
T 4eco_A 403 VMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNM-LTEIPKN-SL 477 (636)
T ss_dssp CEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSC-CSBCCSS-SS
T ss_pred ccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCC-CCCcCHH-Hh
Confidence 5666666553 33332222333 445666666666655532222222 26666667666643 3310000 00
Q ss_pred ccC-----CCCCeeEEecCCCCCCCHHHHHHHH-hcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 311 DGT-----SKLQLQELDLSNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 311 ~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
... .+++|++|+++++ .++.- ...+. ..+++|+.|++++| .++. +..-.. .+++|+.|+++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~--------~l~~L~~L~Ls 544 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLTKL-SDDFRATTLPYLVGIDLSYN-SFSK--FPTQPL--------NSSTLKGFGIR 544 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCCBC-CGGGSTTTCTTCCEEECCSS-CCSS--CCCGGG--------GCSSCCEEECC
T ss_pred ccccccccccCCccEEECcCC-cCCcc-ChhhhhccCCCcCEEECCCC-CCCC--cChhhh--------cCCCCCEEECC
Confidence 000 0016666777663 44411 11111 14666777777666 4442 111111 45666666664
Q ss_pred CCCC-----CCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGG-----ITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~-----i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+. +.......+.. +++|+.|++++|.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITL--CPSLTQLQIGSND 577 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC
T ss_pred CCcccccCcccccChHHHhc--CCCCCEEECCCCc
Confidence 3221 22222223332 5666666666664
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=150.93 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCcCEEeccCCCCCChHHHHh----hcCCC-CccEEEeCCCccchhHHHHHHh--hcC-CCccEEecCCCCCCCHHHHHH
Q 011317 237 TGIKVLDLRDCKNLGDEALRA----ISSLP-QLKILLLDGSDISDVGVSYLRL--TVI-TSLVKLSLRGCKRLTDKCISA 308 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~----l~~~~-~L~~L~l~~~~i~~~~~~~l~~--~~~-~~L~~L~l~~~~~l~~~~~~~ 308 (488)
++|++|+++++ .+++.+... +..++ +|++|++++|.+++.+...+.. ..+ ++|+.|++++|. +++.+...
T Consensus 138 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH
Confidence 45555555553 333322222 22333 5666666666555444332222 013 356666666543 44322221
Q ss_pred Hhc---cCCCCCeeEEecCCCCCCCHHHH---HHHHhcCCCCCeEeecCCC--CCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 309 LFD---GTSKLQLQELDLSNLPHLSDNGI---LTLATCRVPISELRVRQCP--LIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 309 l~~---~~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
+.. .. .++|++|++++ +.+++.+. ..+...+++|+.|++++|. .+++.++..+..... .+++|+.
T Consensus 216 l~~~l~~~-~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-----~l~~L~~ 288 (362)
T 3goz_A 216 LAYIFSSI-PNHVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-----NIQKIIL 288 (362)
T ss_dssp HHHHHHHS-CTTCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-----TCCEEEE
T ss_pred HHHHHhcC-CCCceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-----cCCceEE
Confidence 111 10 04666666666 35554333 2223345667777776662 255666666554333 5566666
Q ss_pred EeccCCCCCCH
Q 011317 381 LDLYNCGGITQ 391 (488)
Q Consensus 381 L~l~~~~~i~~ 391 (488)
|++++|. +.+
T Consensus 289 LdL~~N~-l~~ 298 (362)
T 3goz_A 289 VDKNGKE-IHP 298 (362)
T ss_dssp ECTTSCB-CCG
T ss_pred EecCCCc-CCC
Confidence 6776666 544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=167.82 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.......+ ..+++|++|++++|. ++. ++.. .+++|++|+++++. ...
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~---------l~~--lp~~-~l~~L~~L~Ls~N~------l~~ 135 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNR---------LQN--ISCC-PMASLRHLDLSFND------FDV 135 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTT-TTCTTCCEEECTTSC---------CCE--ECSC-CCTTCSEEECCSSC------CSB
T ss_pred CCCccEEECCCCCCCcCCHHHh-CCCCCCCEEECCCCc---------CCc--cCcc-ccccCCEEECCCCC------ccc
Confidence 5667777776665554322222 256667777776663 221 1111 56677777776432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCC--ceEEecCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL--YKLRVSHG 196 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~ 196 (488)
+. .......+++|++|++++ +.+....+ ..+++| +.|+++++
T Consensus 136 l~---~p~~~~~l~~L~~L~L~~-n~l~~~~~----~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 136 LP---VCKEFGNLTKLTFLGLSA-AKFRQLDL----LPVAHLHLSCILLDLV 179 (562)
T ss_dssp CC---CCGGGGGCTTCCEEEEEC-SBCCTTTT----GGGTTSCEEEEEEEES
T ss_pred cC---chHhhcccCcccEEecCC-CccccCch----hhhhhceeeEEEeecc
Confidence 11 101124577788888877 45554322 234444 77766654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-18 Score=179.95 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=78.7
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCC--CCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSL--PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
.++|+.|+++++ .+.......+..+ ++|++|++++|.+.......+.. +++|+.|+++++. ++......+ .
T Consensus 221 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~-~-- 293 (680)
T 1ziw_A 221 NTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNN-IQHLFSHSL-H-- 293 (680)
T ss_dssp TSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSCC-BSEECTTTT-T--
T ss_pred hccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccC--cccccEeeCCCCc-cCccChhhh-c--
Confidence 356666666664 3433333334433 34777777777665443333333 6777777777653 331110011 1
Q ss_pred CCCCeeEEecCCCCCCCHHHHHH-------HHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 314 SKLQLQELDLSNLPHLSDNGILT-------LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~-------l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
.+++|++|+++++.......... ....+++|+.|++++| .++......+. .+++|++|++++|
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFT---------GLINLKYLSLSNS 363 (680)
T ss_dssp TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTT---------TCTTCCEEECTTC
T ss_pred CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhc---------cccCCcEEECCCC
Confidence 12677777776532111000000 0124677777777777 44432111111 5677888887776
Q ss_pred CCCCHH--HHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQL--AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++.. ....+.....++|+.|++++|.
T Consensus 364 ~-~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 364 F-TSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp B-SCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred c-hhhhhcchhhhcccccCcCceEECCCCC
Confidence 4 2111 0111111113578888887775
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-18 Score=166.87 Aligned_cols=287 Identities=16% Similarity=0.115 Sum_probs=196.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++++.|++..+.++..... +...+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 44 l~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 107 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQ---------IEEIDTYAFAYAHTIQKLYMGFNA------IRY 107 (390)
T ss_dssp GCCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CCC
T ss_pred cCCceEEEecCCchhhCChh-HhcccccCcEEECCCCc---------ccccChhhccCCCCcCEEECCCCC------CCc
Confidence 68999999998766653322 23479999999999984 554444467889999999997643 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ....+++|++|+++++ .+... ...++..+++|++|+++++.. .... ......+++|++|+++++ .+.
T Consensus 108 ~~~~----~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l~~n-~l~ 178 (390)
T 3o6n_A 108 LPPH----VFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSN-RLT 178 (390)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCC-CBCC-TTTTSSCTTCCEEECCSS-CCS
T ss_pred CCHH----HhcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCcc-CccC-hhhccCCCCCCEEECCCC-cCC
Confidence 2221 1245899999999994 66533 223345689999999998753 2111 112356789999999985 444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
.. .+..+++|+.|+++++ .+. .+...++|++|++++|.+..... ...++|+.|+++++. ++..
T Consensus 179 ~~---~~~~l~~L~~L~l~~n-~l~-----~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~-l~~~-- 241 (390)
T 3o6n_A 179 HV---DLSLIPSLFHANVSYN-LLS-----TLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNN-LTDT-- 241 (390)
T ss_dssp BC---CGGGCTTCSEEECCSS-CCS-----EEECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSC-CCCC--
T ss_pred cc---ccccccccceeecccc-ccc-----ccCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCC-Cccc--
Confidence 32 2457899999999985 333 23456789999999997765422 136789999999975 4432
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
..+ . .+++|++|+++++ .++......+. .+++|+.|++++| .++... .... .+++|++|++++|
T Consensus 242 ~~l-~--~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~--~~~~--------~l~~L~~L~L~~n 305 (390)
T 3o6n_A 242 AWL-L--NYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNN-RLVALN--LYGQ--------PIPTLKVLDLSHN 305 (390)
T ss_dssp GGG-G--GCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECCSS-CCCEEE--CSSS--------CCTTCCEEECCSS
T ss_pred HHH-c--CCCCccEEECCCC-cCCCcChhHcc-ccccCCEEECCCC-cCcccC--cccC--------CCCCCCEEECCCC
Confidence 111 2 2289999999994 66643222222 5899999999999 655421 1111 6899999999999
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSVN 415 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~~ 415 (488)
. ++... ..+. .+++|+.|++++|..
T Consensus 306 ~-l~~~~-~~~~--~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 306 H-LLHVE-RNQP--QFDRLENLYLDHNSI 330 (390)
T ss_dssp C-CCCCG-GGHH--HHTTCSEEECCSSCC
T ss_pred c-ceecC-cccc--ccCcCCEEECCCCcc
Confidence 7 66422 1233 378999999999963
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-19 Score=182.87 Aligned_cols=332 Identities=16% Similarity=0.122 Sum_probs=187.4
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+. .
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l 112 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP---------IQSLALGAFSGLSSLQKLVAVETN------L 112 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC---------CCEECTTTTTTCTTCCEEECTTSC------C
T ss_pred hCCCCceEEECCCCcCCccCcccc-cCchhCCEEeCcCCc---------CCccCHhhhcCccccccccccccc------c
Confidence 447899999999877665333333 368999999999984 444344567889999999997543 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCC--CHHHHHHHHhc------------
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQL--TDLVFHDISAT------------ 210 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~------------ 210 (488)
..+.... ...+++|++|+++++ .+....++..+..+++|++|+++++... ....+..+...
T Consensus 113 ~~l~~~~----~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 113 ASLENFP----IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp CCSTTCS----CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccCCCcc----ccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 2222211 246899999999985 5443212222467899999999986421 11111111110
Q ss_pred -----------CCCCCEEEecCCCCCC-HH--------------------------------------------------
Q 011317 211 -----------SLSLTHVCLRWCNLLT-NH-------------------------------------------------- 228 (488)
Q Consensus 211 -----------~~~L~~L~l~~~~~~~-~~-------------------------------------------------- 228 (488)
..+|++|+++++..-. ..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 0023333333210000 00
Q ss_pred ------HHHHhhCCCCcCEEeccCCC---------------------CCChHHHH-------------------hhcCCC
Q 011317 229 ------AIKSLASNTGIKVLDLRDCK---------------------NLGDEALR-------------------AISSLP 262 (488)
Q Consensus 229 ------~~~~l~~~~~L~~L~l~~~~---------------------~~~~~~~~-------------------~l~~~~ 262 (488)
....+..+++|+.|+++++. .+...... ....++
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 00011123444444444321 01000000 003578
Q ss_pred CccEEEeCCCccchhH--HHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc
Q 011317 263 QLKILLLDGSDISDVG--VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 340 (488)
+|++|++++|.++... ...+.. +++|+.|++++|. ++..... .. .+++|++|+++++ .++..........
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~~--~~--~l~~L~~L~l~~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNG-VITMSSN--FL--GLEQLEHLDFQHS-NLKQMSEFSVFLS 419 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHT--CSCCCEEECCSCS-EEEEEEE--EE--TCTTCCEEECTTS-EEESCTTSCTTTT
T ss_pred CCCEEeCcCCccCccccccccccc--cCccCEEECCCCc-ccccccc--cc--ccCCCCEEEccCC-ccccccchhhhhc
Confidence 8999999999877543 233444 8999999999975 3311000 12 2389999999985 4432211111236
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH-HHhhccCCCCccEEEecCCCCHHHH
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF-RWLKKPYFPRLRWLGVTGSVNRDIL 419 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~~ 419 (488)
+++|+.|++++| .++......+. .+++|++|++++|. +++..+ ..+. .+++|+.|++++|......
T Consensus 420 l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~p~~~~--~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAFNGIFN---------GLSSLEVLKMAGNS-FQENFLPDIFT--ELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp CTTCCEEECTTS-CCEECCTTTTT---------TCTTCCEEECTTCE-EGGGEECSCCT--TCTTCCEEECTTSCCCEEC
T ss_pred CCCCCEEeCcCC-cccccchhhhh---------cCCcCcEEECcCCc-Cccccchhhhh--cccCCCEEECCCCccccCC
Confidence 899999999999 44432211121 68999999999997 543212 2233 4899999999999643332
Q ss_pred HHHHhhCCCce-eecccccc
Q 011317 420 DALARSRPFLN-VACRGEEL 438 (488)
Q Consensus 420 ~~~~~~~~~l~-~~~~~~~~ 438 (488)
.......+.++ +...++.+
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCC
T ss_pred hhhhhcccCCCEEeCCCCcC
Confidence 22223445554 44444433
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=168.74 Aligned_cols=191 Identities=16% Similarity=0.153 Sum_probs=79.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.......+ ..+++|++|+|++|. ++......++.+++|++|+++++. ...
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 137 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------LSS 137 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCC
T ss_pred CCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCc---------CCCCCHHHHcCCCCCCEEEeeCCC------CCC
Confidence 4555555555544443222222 245555555555552 332222234455555555554332 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ++..+++|+.|+++++ .+.... ...+..+++|++|+++++.. ...+ ...+++|+.|+++++ .+.
T Consensus 138 l~~~----~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~l~~n-~l~ 205 (597)
T 3oja_B 138 LPRG----IFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYN-LLS 205 (597)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSCC-SBCC----GGGCTTCSEEECCSS-CCS
T ss_pred CCHH----HhccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCCC-CCcC----hhhhhhhhhhhcccC-ccc
Confidence 1111 1123555555555553 333221 11123455555555555431 1111 223455555555553 222
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
.+...++|+.|+++++ .+..... ...++|+.|++++|.++.. ..+. .+++|+.|++++|
T Consensus 206 -----~l~~~~~L~~L~ls~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~N 264 (597)
T 3oja_B 206 -----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYN 264 (597)
T ss_dssp -----EEECCTTCSEEECCSS-CCCEEEC---SCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSS
T ss_pred -----cccCCchhheeeccCC-ccccccc---ccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCCC
Confidence 1223445555555553 2221110 0123455555555544432 1122 2555555555553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-18 Score=172.63 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=161.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++++.|+++++.++..... +...+++|++|+|++|. ++......++.+++|++|+++.+. ...
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 113 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQ---------IEEIDTYAFAYAHTIQKLYMGFNA------IRY 113 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-HHHHCCCCSEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CCC
T ss_pred CCCceEEEeeCCCCCCcCHH-HHccCCCCcEEECCCCC---------CCCCChHHhcCCCCCCEEECCCCc------CCC
Confidence 67899999997766653322 33479999999999984 555444467889999999997643 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... .+..+++|+.|+++++ .+... ...++..+++|++|+++++.. .... ......+++|++|+++++ .+.
T Consensus 114 ~~~~----~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~L~~N-~l~ 184 (597)
T 3oja_B 114 LPPH----VFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSN-RLT 184 (597)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCC-CBCC-TTTTTTCTTCCEEECTTS-CCS
T ss_pred CCHH----HHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCcC-CCCC-hhhhhcCCcCcEEECcCC-CCC
Confidence 2221 2246899999999995 66533 233346789999999998753 2211 112456789999999985 444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KC 305 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~ 305 (488)
.. .+..+++|+.|+++++ .+. .+...++|+.|++++|.+...... ..++|+.|++++|. ++. ..
T Consensus 185 ~~---~~~~l~~L~~L~l~~n-~l~-----~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~-l~~~~~ 249 (597)
T 3oja_B 185 HV---DLSLIPSLFHANVSYN-LLS-----TLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNN-LTDTAW 249 (597)
T ss_dssp BC---CGGGCTTCSEEECCSS-CCS-----EEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSC-CCCCGG
T ss_pred Cc---ChhhhhhhhhhhcccC-ccc-----cccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCC-CCCChh
Confidence 32 2557899999999985 333 345667899999999977643321 35789999999975 443 22
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 356 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 356 (488)
+. .+++|++|+++++ .++......+. .+++|+.|++++| .++
T Consensus 250 l~------~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~ 291 (597)
T 3oja_B 250 LL------NYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNN-RLV 291 (597)
T ss_dssp GG------GCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECTTS-CCC
T ss_pred hc------cCCCCCEEECCCC-ccCCCCHHHhc-CccCCCEEECCCC-CCC
Confidence 22 2278888888884 55533222222 4677777777776 443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=146.27 Aligned_cols=264 Identities=18% Similarity=0.126 Sum_probs=158.5
Q ss_pred EEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHH----HhhhcCC-CccEEEccccccccccccccc
Q 011317 73 LCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL----QQINQHG-KLKHLSLIRSQEFLITYFRRV 147 (488)
Q Consensus 73 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~ 147 (488)
+.++.+.+... +..+....++|++|+|++|. +++.+. ..+..++ +|++|+++++. ....
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~---------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~ 66 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNN---------LYSISTVELIQAFANTPASVTSLNLSGNS------LGFK 66 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSC---------GGGSCHHHHHHHHHTCCTTCCEEECCSSC------GGGS
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCC---------CChHHHHHHHHHHHhCCCceeEEECcCCC------CCHH
Confidence 34445555543 33334345558888888874 444443 4455677 78888886432 2222
Q ss_pred ChHHHHHHHHh-CCCCCEEEEcCCCCCCHHH---HHHHHHhC-CCCceEEecCCCCCCHH---HHHHHHhc-CCCCCEEE
Q 011317 148 NDLGILLMADK-CASMESICLGGFCRVTDTG---FKTILHSC-SNLYKLRVSHGTQLTDL---VFHDISAT-SLSLTHVC 218 (488)
Q Consensus 148 ~~~~l~~l~~~-~~~L~~L~l~~~~~~~~~~---~~~~~~~~-~~L~~L~l~~~~~~~~~---~~~~~~~~-~~~L~~L~ 218 (488)
....+...... +++|++|+++++ .++... +...+..+ ++|++|+++++. ++.. .+...... +++|++|+
T Consensus 67 ~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 67 NSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEE
Confidence 22333333233 378888888885 454332 33333444 788888888765 3332 23333333 46888888
Q ss_pred ecCCCCCCHHHHH----HhhCCC-CcCEEeccCCCCCChHHHH----hhcCC-CCccEEEeCCCccchhHHHHHHh---h
Q 011317 219 LRWCNLLTNHAIK----SLASNT-GIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL---T 285 (488)
Q Consensus 219 l~~~~~~~~~~~~----~l~~~~-~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~~~~l~~---~ 285 (488)
++++ .+++.+.. .+...+ +|++|++++| .+++.+.. .+..+ ++|++|++++|.+++.+...+.. .
T Consensus 145 Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 145 LRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 8884 55533322 234554 8999999886 55554443 33455 48999999999888765543332 1
Q ss_pred cCCCccEEecCCCCCCCHH---HHHHHhccCCCCCeeEEecCCCC--CCCHHHHHHHHhc---CCCCCeEeecCCCCCCH
Q 011317 286 VITSLVKLSLRGCKRLTDK---CISALFDGTSKLQLQELDLSNLP--HLSDNGILTLATC---RVPISELRVRQCPLIGD 357 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~---~~~~l~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~ 357 (488)
..++|+.|++++| .+++. .+..+.... ++|++|++++|. .+++.++..+... +++|+.|++++| .+.+
T Consensus 223 ~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l--~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 223 IPNHVVSLNLCLN-CLHGPSLENLKLLKDSL--KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHP 298 (362)
T ss_dssp SCTTCCEEECCSS-CCCCCCHHHHHHTTTTT--TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCG
T ss_pred CCCCceEEECcCC-CCCcHHHHHHHHHHhcC--CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCC
Confidence 2458999999986 46653 334333333 789999999863 3777777766543 456778889888 6666
Q ss_pred HHH
Q 011317 358 TSV 360 (488)
Q Consensus 358 ~~~ 360 (488)
...
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 533
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-17 Score=163.27 Aligned_cols=280 Identities=19% Similarity=0.167 Sum_probs=172.1
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.... ...+++|++|++++|. ++.. .++.+++|++|+++.+. .
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~---------l~~~---~~~~l~~L~~L~L~~N~------l 118 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK---------LTNL---DVTPLTKLTYLNCDTNK------L 118 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC---------CSCC---CCTTCTTCCEEECCSSC------C
T ss_pred cccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC---------Ccee---ecCCCCcCCEEECCCCc------C
Confidence 34678888888877766532 2367888888888874 3332 16678888888886542 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+. ...+++|+.|+++++ .++... +..+++|++|+++++..+...+ ...+++|++|+++++ .
T Consensus 119 ~~l~-------~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~ 181 (457)
T 3bz5_A 119 TKLD-------VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-K 181 (457)
T ss_dssp SCCC-------CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-C
T ss_pred Ceec-------CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-c
Confidence 2221 245788888888874 554431 3457888888888775443321 335678888888875 4
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 304 (488)
+...+ +..+++|+.|+++++ .+... .+..+++|+.|++++|.++... +. .+++|+.|+++++. ++..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~--~l~~L~~L~l~~N~-l~~~ 248 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTEID---VT--PLTQLTYFDCSVNP-LTEL 248 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSC-CSCC
T ss_pred cceec---cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCcccccC---cc--ccCCCCEEEeeCCc-CCCc
Confidence 44322 567788888888875 44433 3667788888888888777633 22 47888888888764 4322
Q ss_pred HHHHHhccCCCCCee----------EEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCC
Q 011317 305 CISALFDGTSKLQLQ----------ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 374 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~----------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 374 (488)
... .+++|+ .|++++|..+.... ...|++|+.|++++|..+..... .. ..+...+...
T Consensus 249 ~~~------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~-~~-~~L~~L~l~~ 316 (457)
T 3bz5_A 249 DVS------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC-QA-AGITELDLSQ 316 (457)
T ss_dssp CCT------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC-TT-CCCSCCCCTT
T ss_pred CHH------HCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc-CC-CcceEechhh
Confidence 111 114444 44444443222111 12578899999988853321110 00 0000001116
Q ss_pred CCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 375 GSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 375 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+++|+.|++++|. ++.. .+. .|++|+.|++++|.
T Consensus 317 ~~~L~~L~L~~N~-l~~l---~l~--~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 317 NPKLVYLYLNNTE-LTEL---DVS--HNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCEEECTTCC-CSCC---CCT--TCTTCSEEECCSSC
T ss_pred cccCCEEECCCCc-cccc---ccc--cCCcCcEEECCCCC
Confidence 7889999999887 6663 243 48999999998885
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-17 Score=158.69 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=42.9
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++.++.++++++ .+++.++..+..... .+++|+.|++++|. ++......+. .+++|++|++++|+
T Consensus 247 ~~~~l~~l~L~~~-~l~~~~l~~l~~~l~-----~l~~L~~L~Ls~N~-l~~i~~~~~~--~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNV-KITDESLFQVMKLLN-----QISGLLELEFSRNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESC-BCCHHHHHHHHHHHH-----TCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccchhhccccccc-cccCcchhhhHHHHh-----cccCCCEEECCCCC-CCccCHHHHh--cCCCCCEEEeeCCC
Confidence 3566777777777 677766655543322 67788888888886 6632222223 37888888888876
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=182.84 Aligned_cols=297 Identities=14% Similarity=0.142 Sum_probs=139.8
Q ss_pred CCCCcEEEeecCc-cCh-hHHHHHH------hcCCCccEEeccCCCCCCCccccccChHHHH--hhhcCCCccEEEcccc
Q 011317 67 LPGIQKLCLSVDY-ITD-AMVGTIS------QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ--QINQHGKLKHLSLIRS 136 (488)
Q Consensus 67 l~~L~~L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~--~l~~~~~L~~L~l~~~ 136 (488)
+++|+.|+++.|. +.. .....+. ..+++|++|++++|. ++. ... .++.+++|+.|+++.+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~---------L~~-ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN---------LEE-FPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC---------CCB-CCCHHHHTTCTTCCEEECTTS
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc---------CCc-cCChhhhhcCCCCCEEECCCC
Confidence 5667777776665 544 2222222 134467777776663 331 111 3556667777776543
Q ss_pred cccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCC-CceEEecCCCCCCHHHHHHHHhcC--CC
Q 011317 137 QEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSN-LYKLRVSHGTQLTDLVFHDISATS--LS 213 (488)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~ 213 (488)
. ...++ ....+++|+.|+++++ .+. . ++..+..+++ |+.|+++++. +.. +....... ++
T Consensus 584 ~------l~~lp------~~~~L~~L~~L~Ls~N-~l~-~-lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~~~~~~~~~ 645 (876)
T 4ecn_A 584 K------VRHLE------AFGTNVKLTDLKLDYN-QIE-E-IPEDFCAFTDQVEGLGFSHNK-LKY--IPNIFNAKSVYV 645 (876)
T ss_dssp C------CCBCC------CCCTTSEESEEECCSS-CCS-C-CCTTSCEECTTCCEEECCSSC-CCS--CCSCCCTTCSSC
T ss_pred C------cccch------hhcCCCcceEEECcCC-ccc-c-chHHHhhccccCCEEECcCCC-CCc--CchhhhccccCC
Confidence 2 11111 1134566667777663 443 1 2211234555 7777776654 221 11111111 23
Q ss_pred CCEEEecCCCCCCHHHH---HHhh--CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHh----
Q 011317 214 LTHVCLRWCNLLTNHAI---KSLA--SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL---- 284 (488)
Q Consensus 214 L~~L~l~~~~~~~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~---- 284 (488)
|+.|+++++ .+..... ..+. .+++|+.|+++++ .+.......+..+++|+.|+|++|.+.......+..
T Consensus 646 L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 646 MGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp EEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 667777664 2221100 0011 2346777777664 344333333346667777777776555211111100
Q ss_pred -hcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC-----CCCHH
Q 011317 285 -TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP-----LIGDT 358 (488)
Q Consensus 285 -~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-----~l~~~ 358 (488)
..+++|+.|++++|. ++. +........+++|+.|+|+++ .++.- ...+. .+++|+.|++++|+ .+...
T Consensus 724 l~nl~~L~~L~Ls~N~-L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~-~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNK-LTS--LSDDFRATTLPYLSNMDVSYN-CFSSF-PTQPL-NSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CTTGGGCCEEECCSSC-CCC--CCGGGSTTTCTTCCEEECCSS-CCSSC-CCGGG-GCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccCCccEEECCCCC-Ccc--chHHhhhccCCCcCEEEeCCC-CCCcc-chhhh-cCCCCCEEECCCCCCccccccccc
Confidence 012267777777653 431 111111012267777777763 44421 11112 46777777776532 11111
Q ss_pred HHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 359 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
....+. .+++|+.|++++|. ++. +....+++|+.|++++|+
T Consensus 798 ip~~l~---------~L~~L~~L~Ls~N~-L~~-----Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 798 WPTGIT---------TCPSLIQLQIGSND-IRK-----VDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCTTGG---------GCSSCCEEECCSSC-CCB-----CCSCCCSSSCEEECCSCT
T ss_pred ChHHHh---------cCCCCCEEECCCCC-CCc-----cCHhhcCCCCEEECCCCC
Confidence 111111 56777777777776 421 211124677777777775
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-18 Score=179.05 Aligned_cols=302 Identities=11% Similarity=0.043 Sum_probs=181.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccCh-HHHHhhh-------cCCCccEEEccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTN-SGLQQIN-------QHGKLKHLSLIRSQ 137 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~l~~l~-------~~~~L~~L~l~~~~ 137 (488)
.+++|++|+|+.|.+.......+ ..+++|+.|+|++|.. ++. .....++ .+++|++|+++++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~--------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRG--------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTT--------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCC--------cccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 47889999998776544433333 3688999999988731 343 2222232 45689999987543
Q ss_pred ccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCC-CCE
Q 011317 138 EFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLS-LTH 216 (488)
Q Consensus 138 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~ 216 (488)
...++.. .....+++|+.|+++++ .+.. ++ .+..+++|+.|+++++.. . .+......+++ |+.
T Consensus 560 ------L~~ip~~---~~l~~L~~L~~L~Ls~N-~l~~--lp-~~~~L~~L~~L~Ls~N~l-~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 560 ------LEEFPAS---ASLQKMVKLGLLDCVHN-KVRH--LE-AFGTNVKLTDLKLDYNQI-E--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp ------CCBCCCH---HHHTTCTTCCEEECTTS-CCCB--CC-CCCTTSEESEEECCSSCC-S--CCCTTSCEECTTCCE
T ss_pred ------CCccCCh---hhhhcCCCCCEEECCCC-Cccc--ch-hhcCCCcceEEECcCCcc-c--cchHHHhhccccCCE
Confidence 2223220 12356888999999884 5552 23 345678889999987653 2 12222345667 999
Q ss_pred EEecCCCCCCHHHHHHhhC--CCCcCEEeccCCCCCChHHH---Hhhc--CCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 217 VCLRWCNLLTNHAIKSLAS--NTGIKVLDLRDCKNLGDEAL---RAIS--SLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 217 L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~---~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
|+++++ .+...+ ..+.. .++|+.|+++++. +..... ..+. .+++|+.|++++|.+.......+. .+++
T Consensus 624 L~Ls~N-~L~~lp-~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~--~l~~ 698 (876)
T 4ecn_A 624 LGFSHN-KLKYIP-NIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA--TGSP 698 (876)
T ss_dssp EECCSS-CCCSCC-SCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH--TTCC
T ss_pred EECcCC-CCCcCc-hhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc--cCCC
Confidence 999885 343211 11222 3458899998863 332111 1112 345899999999988744333333 4889
Q ss_pred ccEEecCCCCCCCHHHHHH-HhccC-----CCCCeeEEecCCCCCCCHHHHHHHH-hcCCCCCeEeecCCCCCCHHHHHH
Q 011317 290 LVKLSLRGCKRLTDKCISA-LFDGT-----SKLQLQELDLSNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~-l~~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
|+.|++++|. ++. +.. +.... .+++|++|+|++| .++.- ...+. ..+++|+.|++++| .++. +
T Consensus 699 L~~L~Ls~N~-L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~--l-- 768 (876)
T 4ecn_A 699 ISTIILSNNL-MTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYN-CFSS--F-- 768 (876)
T ss_dssp CSEEECCSCC-CSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSS-CCSS--C--
T ss_pred CCEEECCCCc-CCc--cChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCC-CCCc--c--
Confidence 9999999864 441 111 10000 1138999999985 66511 11121 25889999999998 6654 2
Q ss_pred HHcccccCCCCCCCCccEEeccCCCC-----CCHHHHHHhhccCCCCccEEEecCCCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGG-----ITQLAFRWLKKPYFPRLRWLGVTGSVN 415 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~-----i~~~~~~~l~~~~~~~L~~L~l~~~~~ 415 (488)
..... .+++|+.|++++|+. +.......+.. +++|+.|++++|..
T Consensus 769 -p~~l~-----~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 769 -PTQPL-----NSSQLKAFGIRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSNDI 818 (876)
T ss_dssp -CCGGG-----GCTTCCEEECCCCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSCC
T ss_pred -chhhh-----cCCCCCEEECCCCCCcccccccccChHHHhc--CCCCCEEECCCCCC
Confidence 11111 788999999987431 33322334443 89999999999864
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-18 Score=158.38 Aligned_cols=275 Identities=15% Similarity=0.111 Sum_probs=118.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++++.|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+. ...
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~ 114 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKNQ------LKE 114 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSC------CSB
T ss_pred CCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCc---------CCeeCHHHhcCCCCCCEEECCCCc------CCc
Confidence 3566666666655554322222 256666666666653 333223345566666666665432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. ...++|++|+++++ .+.... ...+..+++|+.|+++++..............+++|++|+++++ .+.
T Consensus 115 l~~-------~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~ 184 (330)
T 1xku_A 115 LPE-------KMPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NIT 184 (330)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCC
T ss_pred cCh-------hhcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccc
Confidence 111 11245666666653 443321 22234456666666655432100000111233445555555543 221
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
..+. ...++|+.|+++++ .+.......+..+++|++|++++|.++......+.. +
T Consensus 185 ~l~~---~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l------------------- 239 (330)
T 1xku_A 185 TIPQ---GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--T------------------- 239 (330)
T ss_dssp SCCS---SCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--S-------------------
T ss_pred cCCc---cccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--C-------------------
Confidence 1000 01244555555443 233333333444444555555444443322211222 3
Q ss_pred HHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
++|++|+++++ .++ +.++ ..+++|+.|++++| .++..+...+..... ....+.|+.|+++
T Consensus 240 ---------~~L~~L~L~~N-~l~~lp~~l----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~---~~~~~~l~~l~l~ 301 (330)
T 1xku_A 240 ---------PHLRELHLNNN-KLVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGY---NTKKASYSGVSLF 301 (330)
T ss_dssp ---------TTCCEEECCSS-CCSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSC---CTTSCCCSEEECC
T ss_pred ---------CCCCEEECCCC-cCccCChhh----ccCCCcCEEECCCC-cCCccChhhcCCccc---ccccccccceEee
Confidence 45555555553 333 1111 14566666666666 444322222211000 0023567777777
Q ss_pred CCCCCCHHHH--HHhhccCCCCccEEEecCC
Q 011317 385 NCGGITQLAF--RWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 385 ~~~~i~~~~~--~~l~~~~~~~L~~L~l~~~ 413 (488)
+|+ +....+ ..+. .+++++.+++++|
T Consensus 302 ~N~-~~~~~i~~~~f~--~~~~l~~l~L~~N 329 (330)
T 1xku_A 302 SNP-VQYWEIQPSTFR--CVYVRAAVQLGNY 329 (330)
T ss_dssp SSS-SCGGGSCGGGGT--TCCCGGGEEC---
T ss_pred cCc-ccccccCccccc--cccceeEEEeccc
Confidence 776 433211 2232 3667777777665
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=157.95 Aligned_cols=174 Identities=13% Similarity=0.135 Sum_probs=120.6
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHH--HHHHhhcCCC
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV--SYLRLTVITS 289 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~~ 289 (488)
++|+.|+++++. +.... ....+++|++|+++++ .+.......+..+++|++|++++|.++.... ..+. .+++
T Consensus 302 ~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~ 375 (520)
T 2z7x_B 302 MNIKNFTVSGTR-MVHML--CPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKS 375 (520)
T ss_dssp CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTT
T ss_pred CceeEEEcCCCc-ccccc--chhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCC
Confidence 357777777643 22211 0147899999999996 5666556677899999999999999886322 3344 4999
Q ss_pred ccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC-CCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 290 LVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 290 L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
|+.|++++|. ++. .... .. ..+++|++|+++++ .++..... .+ ++|+.|++++| .++. +..-..
T Consensus 376 L~~L~Ls~N~-l~~~l~~~-~~--~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~L~~L~Ls~N-~l~~--ip~~~~-- 441 (520)
T 2z7x_B 376 LQQLDISQNS-VSYDEKKG-DC--SWTKSLLSLNMSSN-ILTDTIFR----CLPPRIKVLDLHSN-KIKS--IPKQVV-- 441 (520)
T ss_dssp CCEEECCSSC-CBCCGGGC-SC--CCCTTCCEEECCSS-CCCGGGGG----SCCTTCCEEECCSS-CCCC--CCGGGG--
T ss_pred CCEEECCCCc-CCcccccc-hh--ccCccCCEEECcCC-CCCcchhh----hhcccCCEEECCCC-cccc--cchhhh--
Confidence 9999999975 432 1111 11 12389999999995 67654333 33 69999999999 6652 221111
Q ss_pred ccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 368 VDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++......+. .+++|++|++++|+
T Consensus 442 ------~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 ------KLEALQELNVASNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 479 (520)
T ss_dssp ------GCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ------cCCCCCEEECCCCc-CCccCHHHhc--cCCcccEEECcCCC
Confidence 68999999999997 7753322243 48999999999987
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-19 Score=188.03 Aligned_cols=328 Identities=14% Similarity=0.107 Sum_probs=183.6
Q ss_pred HHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhH-HHHHHhcCCCccEEec
Q 011317 22 ARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAM-VGTISQGLVSLTHLDL 100 (488)
Q Consensus 22 ~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~L 100 (488)
..+.. +|+.++.|++++........ . ....+++|++|+++++...... ...+ ..+++|++|+|
T Consensus 17 ~~vP~-lp~~l~~LdLs~N~i~~i~~---~-----------~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~L 80 (844)
T 3j0a_A 17 TQVPQ-VLNTTERLLLSFNYIRTVTA---S-----------SFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDL 80 (844)
T ss_dssp SCCCS-SCTTCCEEEEESCCCCEECS---S-----------SCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEEC
T ss_pred CCCCC-CCCCcCEEECCCCcCCccCh---h-----------HCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEEC
Confidence 33444 66677777777543211110 0 1345889999999876332221 1222 47889999999
Q ss_pred cCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHH-HHHHhCCCCCEEEEcCCCCCCHHHHH
Q 011317 101 RDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGIL-LMADKCASMESICLGGFCRVTDTGFK 179 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~ 179 (488)
++|. ++......+..+++|++|+++.+. +.+.... .....+++|++|+++++ .+....+.
T Consensus 81 s~N~---------l~~~~p~~~~~l~~L~~L~Ls~n~---------l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~ 141 (844)
T 3j0a_A 81 GSSK---------IYFLHPDAFQGLFHLFELRLYFCG---------LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH 141 (844)
T ss_dssp TTCC---------CCEECTTSSCSCSSCCCEECTTCC---------CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCC
T ss_pred CCCc---------CcccCHhHccCCcccCEeeCcCCC---------CCcccccCccccccCCCCEEECCCC-cccccccc
Confidence 9884 554444567788999999997543 1110000 01245889999999984 55433222
Q ss_pred HHHHhCCCCceEEecCCCCC--CHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC------CcCEEeccCCCCCC
Q 011317 180 TILHSCSNLYKLRVSHGTQL--TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT------GIKVLDLRDCKNLG 251 (488)
Q Consensus 180 ~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~ 251 (488)
..+..+++|++|+++++... ....+..+.. ++|+.|+++++. +.......++.++ +|+.|+++++. +.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~ 217 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WT 217 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SS
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCc-Cc
Confidence 23467899999999986531 1122222222 689999998853 3221111122333 39999999862 22
Q ss_pred hHHHHh------------------------------------hcC--CCCccEEEeCCCccchhHHHHHHhhcCCCccEE
Q 011317 252 DEALRA------------------------------------ISS--LPQLKILLLDGSDISDVGVSYLRLTVITSLVKL 293 (488)
Q Consensus 252 ~~~~~~------------------------------------l~~--~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L 293 (488)
...... +.. .++|+.|++++|.+.......+. .+++|+.|
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L 295 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVL 295 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEE
T ss_pred hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEE
Confidence 211111 111 25677788877766543322222 37778888
Q ss_pred ecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCC
Q 011317 294 SLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 373 (488)
Q Consensus 294 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 373 (488)
+++++. ++...-..+ . .+++|++|+++++ .++......+ ..+++|+.|++++| .++......+.
T Consensus 296 ~L~~n~-i~~~~~~~~-~--~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~~~~--------- 359 (844)
T 3j0a_A 296 NLAYNK-INKIADEAF-Y--GLDNLQVLNLSYN-LLGELYSSNF-YGLPKVAYIDLQKN-HIAIIQDQTFK--------- 359 (844)
T ss_dssp EEESCC-CCEECTTTT-T--TCSSCCEEEEESC-CCSCCCSCSC-SSCTTCCEEECCSC-CCCCCCSSCSC---------
T ss_pred ECCCCc-CCCCChHHh-c--CCCCCCEEECCCC-CCCccCHHHh-cCCCCCCEEECCCC-CCCccChhhhc---------
Confidence 887753 432111111 1 2277888888874 4432111111 15678888888877 44322111111
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++. +. .+++|+.|.+++|.
T Consensus 360 ~l~~L~~L~Ls~N~-l~~-----i~--~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 360 FLEKLQTLDLRDNA-LTT-----IH--FIPSIPDIFLSGNK 392 (844)
T ss_dssp SCCCCCEEEEETCC-SCC-----CS--SCCSCSEEEEESCC
T ss_pred CCCCCCEEECCCCC-CCc-----cc--CCCCcchhccCCCC
Confidence 57888888888887 442 22 26677777777664
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-18 Score=185.39 Aligned_cols=340 Identities=18% Similarity=0.139 Sum_probs=211.8
Q ss_pred CccceeeeeecccccchhhHHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccC
Q 011317 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYIT 81 (488)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 81 (488)
.++++|.|+++.-. .. ....|..++ +|+.|+++..... ..+.. .....+++|++|+|+++.+.
T Consensus 24 ~~l~~LdLs~N~i~--~i-~~~~~~~l~-~L~~LdLs~n~~~--~~i~~-----------~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 24 NTTERLLLSFNYIR--TV-TASSFPFLE-QLQLLELGSQYTP--LTIDK-----------EAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp TTCCEEEEESCCCC--EE-CSSSCSSCC-SCSEEEECTTCCC--CEECT-----------TTTSSCTTCCEEECTTCCCC
T ss_pred CCcCEEECCCCcCC--cc-ChhHCcccc-cCeEEeCCCCCCc--cccCH-----------HHhcCCCCCCEEECCCCcCc
Confidence 46788888765332 11 112356666 8888888754210 00100 01345789999999988777
Q ss_pred hhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHh--hhcCCCccEEEcccccccccccccccChHHHHHHHHhC
Q 011317 82 DAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ--INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKC 159 (488)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 159 (488)
......+ ..+++|++|+|++|. ++...+.. +..+++|++|+++.+.- ..+. .......+
T Consensus 87 ~~~p~~~-~~l~~L~~L~Ls~n~---------l~~~~~~~~~~~~L~~L~~L~Ls~N~l------~~~~---~~~~~~~L 147 (844)
T 3j0a_A 87 FLHPDAF-QGLFHLFELRLYFCG---------LSDAVLKDGYFRNLKALTRLDLSKNQI------RSLY---LHPSFGKL 147 (844)
T ss_dssp EECTTSS-CSCSSCCCEECTTCC---------CSSCCSTTCCCSSCSSCCEEEEESCCC------CCCC---CCGGGGTC
T ss_pred ccCHhHc-cCCcccCEeeCcCCC---------CCcccccCccccccCCCCEEECCCCcc------cccc---cchhHhhC
Confidence 5433333 378999999999984 44322222 67899999999976531 1111 11123568
Q ss_pred CCCCEEEEcCCCCCCH---HHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCC------CCCEEEecCCCCCCHHHH
Q 011317 160 ASMESICLGGFCRVTD---TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSL------SLTHVCLRWCNLLTNHAI 230 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~ 230 (488)
++|+.|+++++ .+.. ..+..+. .++|+.|+++++......+. ....++ .|+.|+++++. +.....
T Consensus 148 ~~L~~L~Ls~N-~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~ 221 (844)
T 3j0a_A 148 NSLKSIDFSSN-QIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGNG-WTVDIT 221 (844)
T ss_dssp SSCCEEEEESS-CCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSCC-SSTTTT
T ss_pred CCCCEEECCCC-cCCeeCHHHccccc--CCccceEECCCCcccccccc--chhhcCCccccCceeEEecCCCc-CchhHH
Confidence 99999999984 4432 2233321 17999999998753221110 011122 49999999862 211110
Q ss_pred HH------------------------------------hh--CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 231 KS------------------------------------LA--SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 231 ~~------------------------------------l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
.. +. ..++|+.|+++++ .+.......+..+++|+.|++++|
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCC
Confidence 00 11 1368999999885 555555556778999999999999
Q ss_pred ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 273 DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 273 ~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
.+.......+.. +++|+.|+++++. ++......+ ..+++|++|+++++ .++......+ ..+++|+.|++++|
T Consensus 301 ~i~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 301 KINKIADEAFYG--LDNLQVLNLSYNL-LGELYSSNF---YGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCEECTTTTTT--CSSCCEEEEESCC-CSCCCSCSC---SSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETC
T ss_pred cCCCCChHHhcC--CCCCCEEECCCCC-CCccCHHHh---cCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCC
Confidence 877654443444 8999999999874 431100011 12389999999985 5542221111 25899999999999
Q ss_pred CCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 353 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 353 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++. +. .+++|+.|++++|. ++ .+.. ...+++.|++++|.
T Consensus 373 -~l~~-----i~---------~~~~L~~L~l~~N~-l~-----~l~~-~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 373 -ALTT-----IH---------FIPSIPDIFLSGNK-LV-----TLPK-INLTANLIHLSENR 412 (844)
T ss_dssp -CSCC-----CS---------SCCSCSEEEEESCC-CC-----CCCC-CCTTCCEEECCSCC
T ss_pred -CCCc-----cc---------CCCCcchhccCCCC-cc-----cccc-cccccceeecccCc
Confidence 5542 11 57889999999998 55 2222 36789999999885
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-17 Score=163.04 Aligned_cols=257 Identities=17% Similarity=0.174 Sum_probs=173.8
Q ss_pred CCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccc
Q 011317 64 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 143 (488)
Q Consensus 64 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 143 (488)
...+++|++|+++.+.+.... + ..+++|++|++++|. ++.. .++.+++|++|+++.+.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~~L~L~~N~---------l~~l---~~~~l~~L~~L~l~~N~------ 138 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD---V-TPLTKLTYLNCDTNK---------LTKL---DVSQNPLLTYLNCARNT------ 138 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC---C-TTCTTCCEEECCSSC---------CSCC---CCTTCTTCCEEECTTSC------
T ss_pred cccCCCCCEEECcCCCCceee---c-CCCCcCCEEECCCCc---------CCee---cCCCCCcCCEEECCCCc------
Confidence 345789999999988877642 2 478999999999984 3332 26788999999997543
Q ss_pred ccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 144 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 144 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
...+. ...+++|+.|+++++..+.... +..+++|+.|+++++. ++..+ ...+++|+.|+++++
T Consensus 139 l~~l~-------l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N- 201 (457)
T 3bz5_A 139 LTEID-------VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTN- 201 (457)
T ss_dssp CSCCC-------CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSS-
T ss_pred cceec-------cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCC-
Confidence 22221 2458899999999865554332 3468899999999875 33322 456789999999985
Q ss_pred CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEec--------
Q 011317 224 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL-------- 295 (488)
Q Consensus 224 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l-------- 295 (488)
.+... .+..+++|+.|+++++ .+.... +..+++|+.|++++|.++..... .+++|+.|++
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N-~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSN-KLTEID---VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCCCSCC
T ss_pred cCCee---ccccCCCCCEEECcCC-cccccC---ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCCCCEE
Confidence 44433 3668899999999986 454432 67889999999999987764322 3555555544
Q ss_pred --CCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHH-----HHHH-HhcCCCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 296 --RGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNG-----ILTL-ATCRVPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 296 --~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~-----~~~l-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
++|..+.... . ..+++|+.|++++|..+..-. +..+ ...+++|+.|++++| .++.. .+.
T Consensus 270 ~l~~n~~~~~~~----~--~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l---~l~--- 336 (457)
T 3bz5_A 270 DLTHNTQLIYFQ----A--EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL---DVS--- 336 (457)
T ss_dssp CCTTCTTCCEEE----C--TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC---CCT---
T ss_pred ECCCCccCCccc----c--cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc---ccc---
Confidence 4443222111 1 123889999999875332100 0000 125688999999988 66552 122
Q ss_pred ccCCCCCCCCccEEeccCCCCCCH
Q 011317 368 VDDDRWYGSSIRLLDLYNCGGITQ 391 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~~i~~ 391 (488)
.+++|+.|++++|. +++
T Consensus 337 ------~l~~L~~L~l~~N~-l~~ 353 (457)
T 3bz5_A 337 ------HNTKLKSLSCVNAH-IQD 353 (457)
T ss_dssp ------TCTTCSEEECCSSC-CCB
T ss_pred ------cCCcCcEEECCCCC-CCC
Confidence 78999999999998 664
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-18 Score=174.78 Aligned_cols=299 Identities=11% Similarity=0.089 Sum_probs=194.7
Q ss_pred CCCCCcEEEeecCccChh-----------------HHHHHH-hcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCC
Q 011317 66 ILPGIQKLCLSVDYITDA-----------------MVGTIS-QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGK 127 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~-----------------~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~ 127 (488)
.+++|++|+++++.+... ....+. ..+++|++|++++|. +.......++.+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---------l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---------NLTKLPTFLKALPE 274 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---------TCSSCCTTTTTCSS
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---------CCccChHHHhcCCC
Confidence 388999999998887763 222221 168999999999985 33333356788999
Q ss_pred ccEEEcccccccccccccccChHHHHH-HHH-----hCCCCCEEEEcCCCCCCHHHHHH--HHHhCCCCceEEecCCCCC
Q 011317 128 LKHLSLIRSQEFLITYFRRVNDLGILL-MAD-----KCASMESICLGGFCRVTDTGFKT--ILHSCSNLYKLRVSHGTQL 199 (488)
Q Consensus 128 L~~L~l~~~~~~~~~~~~~~~~~~l~~-l~~-----~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 199 (488)
|++|+++.+. .++...++. +.. .+++|+.|+++++ .++. ++. .+..+++|++|+++++...
T Consensus 275 L~~L~Ls~n~--------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 275 MQLINVACNR--------GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCEEECTTCT--------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCEEECcCCC--------CCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCCcCc
Confidence 9999997431 144412222 222 2489999999995 6652 332 4577999999999987532
Q ss_pred CHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC-cCEEeccCCCCCChHHHHhhcC--CCCccEEEeCCCccch
Q 011317 200 TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG-IKVLDLRDCKNLGDEALRAISS--LPQLKILLLDGSDISD 276 (488)
Q Consensus 200 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~i~~ 276 (488)
...+ ....+++|++|+++++ .+... ...+..+++ |+.|+++++ .+... ...+.. +++|+.|++++|.+..
T Consensus 344 g~ip---~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 344 GKLP---AFGSEIKLASLNLAYN-QITEI-PANFCGFTEQVENLSFAHN-KLKYI-PNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp EECC---CCEEEEEESEEECCSS-EEEEC-CTTSEEECTTCCEEECCSS-CCSSC-CSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cchh---hhCCCCCCCEEECCCC-ccccc-cHhhhhhcccCcEEEccCC-cCccc-chhhhhcccCccCEEECcCCcCCC
Confidence 1222 2346689999999985 44311 123557888 999999986 44422 223333 4589999999998875
Q ss_pred hHHHHHH-----hhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHH------hcCC
Q 011317 277 VGVSYLR-----LTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA------TCRV 342 (488)
Q Consensus 277 ~~~~~l~-----~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~------~~~~ 342 (488)
.....+. ...+++|+.|++++|. ++ ...+..+ ++|++|+++++ .++.-....+. +.++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l------~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTG------SPLSSINLMGN-MLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTT------CCCSEEECCSS-CCSBCCSSSSEETTEECTTGG
T ss_pred cchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccC------CCCCEEECCCC-CCCCcCHHHhccccccccccC
Confidence 4333232 0025699999999975 44 2222223 89999999994 56511111000 1123
Q ss_pred CCCeEeecCCCCCCHHHHHHHH-cccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 343 PISELRVRQCPLIGDTSVIALA-SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+|+.|++++| .++... ..+. . .+++|+.|++++|. ++. ....+.. +++|+.|++++|
T Consensus 489 ~L~~L~Ls~N-~l~~lp-~~~~~~--------~l~~L~~L~Ls~N~-l~~-ip~~~~~--l~~L~~L~Ls~N 546 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLS-DDFRAT--------TLPYLVGIDLSYNS-FSK-FPTQPLN--SSTLKGFGIRNQ 546 (636)
T ss_dssp GCCEEECCSS-CCCBCC-GGGSTT--------TCTTCCEEECCSSC-CSS-CCCGGGG--CSSCCEEECCSC
T ss_pred CccEEECcCC-cCCccC-hhhhhc--------cCCCcCEEECCCCC-CCC-cChhhhc--CCCCCEEECCCC
Confidence 8999999999 666211 1111 1 67899999999998 765 2234443 899999999654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-16 Score=152.80 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=189.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
++.....+.+++.++.-- . ...++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 30 C~~~~~c~~~~~~l~~iP-~---~~~~~L~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 90 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-S---GLTEAVKSLDLSNNR---------ITYISNSDLQRCVNLQALVLTSNG------INT 90 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-T---TCCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTSC------CCE
T ss_pred CCCCeEeeCCCCCccccc-c---cccccCcEEECCCCc---------CcccCHHHhccCCCCCEEECCCCc------cCc
Confidence 555566777777766521 1 135689999999984 554344457889999999997543 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.... ...+++|++|+++++ .++.. ....+..+++|++|+++++. +...+.......+++|++|+++++..+.
T Consensus 91 ~~~~~----~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 91 IEEDS----FSSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp ECTTT----TTTCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred cCHhh----cCCCCCCCEEECCCC-cCCcC-CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc
Confidence 22111 245899999999984 66543 23335679999999999875 3221110134578899999999864444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
......+..+++|+.|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|+++++. ++....
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~L~~n~-l~~~~~ 239 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--TSSVECLELRDTD-LDTFHF 239 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--TTTEEEEEEESCB-CTTCCC
T ss_pred ccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhh--cccccEEECCCCc-cccccc
Confidence 433344668899999999986 566555667788999999999999887555444444 8999999999864 443211
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEec
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 383 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 383 (488)
..+......+.++.+++.+ ..+++..+..+ ...+++|+.|++++| .++.... .+.. .+++|++|++
T Consensus 240 ~~l~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~--------~l~~L~~L~L 308 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRN-VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFD--------RLTSLQKIWL 308 (353)
T ss_dssp C------CCCCCCEEEEES-CBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTT--------TCTTCCEEEC
T ss_pred cccccccccchhhcccccc-ccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHh--------cCCCCCEEEe
Confidence 1111111227799999998 47887665543 346899999999999 6652111 1111 7899999999
Q ss_pred cCCC
Q 011317 384 YNCG 387 (488)
Q Consensus 384 ~~~~ 387 (488)
++|+
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9998
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-18 Score=158.76 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=66.7
Q ss_pred CCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHH
Q 011317 262 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 338 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 338 (488)
++|++|++++|.++......+.. +++|+.|+++++. ++. ..+.. +++|++|+++++ .++.-. .. .
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~--l~~L~~L~L~~N~-l~~~~~~~~~~------l~~L~~L~L~~N-~l~~lp-~~-l 260 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLR--YSKLYRLGLGHNQ-IRMIENGSLSF------LPTLRELHLDNN-KLSRVP-AG-L 260 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTT--CTTCSCCBCCSSC-CCCCCTTGGGG------CTTCCEEECCSS-CCCBCC-TT-G
T ss_pred CCCCEEECCCCcCCccCHHHhcC--CCCCCEEECCCCc-CCcCChhHhhC------CCCCCEEECCCC-cCeecC-hh-h
Confidence 45666666666554433222333 5666666666543 321 11111 166777777663 444110 01 1
Q ss_pred hcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH--HHHHhhccCCCCccEEEecCCC
Q 011317 339 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL--AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 339 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+++|+.|++++| .++..+...+...... ...++|+.|++++|+ +... ....+. .+++|+.+++++|.
T Consensus 261 ~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~---~~~~~l~~L~l~~N~-~~~~~~~~~~~~--~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTN-NITKVGVNDFCPVGFG---VKRAYYNGISLFNNP-VPYWEVQPATFR--CVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTSSSCSSCC---SSSCCBSEEECCSSS-SCGGGSCGGGGT--TBCCSTTEEC----
T ss_pred hcCccCCEEECCCC-CCCccChhHccccccc---cccccccceEeecCc-ccccccCccccc--ccchhhhhhccccc
Confidence 25777888888777 5554433333221000 024678888888887 5421 122333 37788888887763
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=153.61 Aligned_cols=175 Identities=12% Similarity=0.156 Sum_probs=119.5
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHH--HHHHhhcCCC
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV--SYLRLTVITS 289 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~~ 289 (488)
++|++|+++++. +.... ....+++|++|+++++ .+.......+..+++|+.|++++|.++.... ..+. .+++
T Consensus 331 ~~L~~L~l~~n~-~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~l~~ 404 (562)
T 3a79_B 331 MNIKMLSISDTP-FIHMV--CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMSS 404 (562)
T ss_dssp CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--TCTT
T ss_pred CcceEEEccCCC-ccccc--CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc--CCCC
Confidence 357777776643 22111 1147899999999996 5666556677899999999999998886322 2233 4899
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC-CCCCeEeecCCCCCCHHHHHHHHcccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASMLV 368 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~ 368 (488)
|+.|+++++. ++...-.... ..+++|++|+++++ .++..... .+ ++|+.|++++| .++ .+....+
T Consensus 405 L~~L~l~~N~-l~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~----~l~~~L~~L~L~~N-~l~-----~ip~~~~ 470 (562)
T 3a79_B 405 LETLDVSLNS-LNSHAYDRTC--AWAESILVLNLSSN-MLTGSVFR----CLPPKVKVLDLHNN-RIM-----SIPKDVT 470 (562)
T ss_dssp CCEEECTTSC-CBSCCSSCCC--CCCTTCCEEECCSS-CCCGGGGS----SCCTTCSEEECCSS-CCC-----CCCTTTT
T ss_pred CCEEECCCCc-CCCccChhhh--cCcccCCEEECCCC-CCCcchhh----hhcCcCCEEECCCC-cCc-----ccChhhc
Confidence 9999999975 3320000011 12389999999994 67654333 34 69999999999 666 1221111
Q ss_pred cCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 369 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 369 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++......+. .+++|+.|++++|+
T Consensus 471 -----~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 -----HLQALQELNVASNQ-LKSVPDGVFD--RLTSLQYIWLHDNP 508 (562)
T ss_dssp -----SSCCCSEEECCSSC-CCCCCTTSTT--TCTTCCCEECCSCC
T ss_pred -----CCCCCCEEECCCCC-CCCCCHHHHh--cCCCCCEEEecCCC
Confidence 68899999999998 7743322243 48999999999987
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-17 Score=169.01 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|+++++ .++......+ ..+++|+.|++++| +++......+. .+++|++|++++|. ++.....
T Consensus 494 ~~L~~L~Ls~N-~L~~l~~~~f-~~l~~L~~L~Ls~N-~l~~l~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~ 560 (635)
T 4g8a_A 494 RNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLNH-IMTSKKQ 560 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCCBCCCGGGT---------TCTTCCEEECTTSC-CCBCCSS
T ss_pred cccCEEECCCC-ccCCcChHHH-cCCCCCCEEECCCC-cCCCCChhHHh---------CCCCCCEEECCCCc-CCCCCHH
Confidence 55666666663 4432111111 14566666666665 33322111111 45566666666665 4443333
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.+.. ..++|+.|++++|+
T Consensus 561 ~l~~-l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 561 ELQH-FPSSLAFLNLTQND 578 (635)
T ss_dssp CTTC-CCTTCCEEECTTCC
T ss_pred HHHh-hhCcCCEEEeeCCC
Confidence 3322 11456666666554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-16 Score=148.11 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCCh--HHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD--EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
++|++|+++++ .+.......+..+++|+.|+++++ .+.. .....+..+++|++|++++|.++.... ...++
T Consensus 121 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-----~~~~~ 193 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-----GLPPS 193 (330)
T ss_dssp TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-----SCCTT
T ss_pred ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCc-----ccccc
Confidence 46666666653 333333334556777777777774 3332 223345677888888888876653211 12467
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 369 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 369 (488)
|+.|+++++. ++......+. .+++|++|+++++ .++......+. .+++|+.|++++| .++. +.....
T Consensus 194 L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~-----lp~~l~- 260 (330)
T 1xku_A 194 LTELHLDGNK-ITKVDAASLK---GLNNLAKLGLSFN-SISAVDNGSLA-NTPHLRELHLNNN-KLVK-----VPGGLA- 260 (330)
T ss_dssp CSEEECTTSC-CCEECTGGGT---TCTTCCEEECCSS-CCCEECTTTGG-GSTTCCEEECCSS-CCSS-----CCTTTT-
T ss_pred CCEEECCCCc-CCccCHHHhc---CCCCCCEEECCCC-cCceeChhhcc-CCCCCCEEECCCC-cCcc-----CChhhc-
Confidence 8888888764 4422111121 2278999999884 56533222222 5899999999999 5552 111111
Q ss_pred CCCCCCCCccEEeccCCCCCCHHHHHHhhcc----CCCCccEEEecCCCC
Q 011317 370 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKP----YFPRLRWLGVTGSVN 415 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~~L~~L~l~~~~~ 415 (488)
.+++|++|++++|. ++..+...+... ..++|+.|++.+++.
T Consensus 261 ----~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 261 ----DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp ----TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ----cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 78999999999998 776544444321 247899999999974
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-16 Score=145.61 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=146.9
Q ss_pred CcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccCh
Q 011317 70 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVND 149 (488)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (488)
++.++++.+.+.. .+..+...+++|++|++++|. ++......+..+++|++|+++.+.- .....
T Consensus 12 l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~ 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNVL------YETLD 75 (317)
T ss_dssp EEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSC---------CCCCCHHHHTTCTTCCEEECTTSCC------EEEEE
T ss_pred eeEeeccccchhh-hHHHHhccCCCCCEEECcCCc---------cCcCCHHHhhCCCcCCEEECCCCcC------Ccchh
Confidence 3344444444432 344445567788888888874 4443444567778888888865431 11111
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHH
Q 011317 150 LGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA 229 (488)
Q Consensus 150 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 229 (488)
...+++|++|+++++ .+... ...++|++|+++++. +....
T Consensus 76 ------~~~l~~L~~L~Ls~n-~l~~l------~~~~~L~~L~l~~n~---------------------------l~~~~ 115 (317)
T 3o53_A 76 ------LESLSTLRTLDLNNN-YVQEL------LVGPSIETLHAANNN---------------------------ISRVS 115 (317)
T ss_dssp ------ETTCTTCCEEECCSS-EEEEE------EECTTCCEEECCSSC---------------------------CSEEE
T ss_pred ------hhhcCCCCEEECcCC-ccccc------cCCCCcCEEECCCCc---------------------------cCCcC
Confidence 234667777777763 33321 123455555555432 21110
Q ss_pred HHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHH
Q 011317 230 IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISAL 309 (488)
Q Consensus 230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l 309 (488)
...+++|+.|+++++ .+.......+..+++|++|++++|.++......+.. .+++|+.|++++|. ++..
T Consensus 116 ---~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~-l~~~----- 184 (317)
T 3o53_A 116 ---CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNF-IYDV----- 184 (317)
T ss_dssp ---ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSC-CCEE-----
T ss_pred ---ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-ccCcCCEEECCCCc-Cccc-----
Confidence 113466777777764 444444445556777777777777666544444433 36777777777754 4321
Q ss_pred hccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCC
Q 011317 310 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 389 (488)
Q Consensus 310 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 389 (488)
.....+++|++|+++++ .++..... ...+++|+.|++++| .++. +..... .+++|+.|++++|+ +
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~~~~~--------~l~~L~~L~l~~N~-~ 249 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALR--------FSQNLEHFDLRGNG-F 249 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCC--------CCTTCCEEECTTCC-C
T ss_pred ccccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc--hhhHhh--------cCCCCCEEEccCCC-c
Confidence 11112378888888884 55522111 225788999999888 5553 111111 67889999999988 7
Q ss_pred C-HHHHHHhhccCCCCccEEEecCC
Q 011317 390 T-QLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 390 ~-~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+ +.....+. .+++|+.+++.++
T Consensus 250 ~~~~~~~~~~--~~~~L~~l~l~~~ 272 (317)
T 3o53_A 250 HCGTLRDFFS--KNQRVQTVAKQTV 272 (317)
T ss_dssp BHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred cCcCHHHHHh--ccccceEEECCCc
Confidence 7 43334444 3777877777544
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-16 Score=151.40 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=142.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|+.|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+. ...
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNK---------ISKIHEKAFSPLRKLQKLYISKNH------LVE 116 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECGGGSTTCTTCCEEECCSSC------CCS
T ss_pred CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCc---------cCccCHhHhhCcCCCCEEECCCCc------CCc
Confidence 4677777777666654322222 367777777777763 444334456677777777776432 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHH-HHHHhcCCCCCEEEecCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVF-HDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 225 (488)
+... ..++|++|+++++ .+... ....+..+++|++|+++++.. ...+. ......+ +|++|+++++ .+
T Consensus 117 l~~~-------~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l-~L~~L~l~~n-~l 184 (332)
T 2ft3_A 117 IPPN-------LPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNPL-ENSGFEPGAFDGL-KLNYLRISEA-KL 184 (332)
T ss_dssp CCSS-------CCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCCC-BGGGSCTTSSCSC-CCSCCBCCSS-BC
T ss_pred cCcc-------ccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCcc-ccCCCCcccccCC-ccCEEECcCC-CC
Confidence 2111 1256777777773 44432 112234567777777776542 11000 0111223 6777777764 33
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--H
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--D 303 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~ 303 (488)
...+. ...++|+.|+++++ .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|. ++ +
T Consensus 185 ~~l~~---~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~lp 257 (332)
T 2ft3_A 185 TGIPK---DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNK-LSRVP 257 (332)
T ss_dssp SSCCS---SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSC-CCBCC
T ss_pred CccCc---cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCc-CeecC
Confidence 22110 12357777777774 454444455667777777777777665543333333 6777777777753 43 1
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh-----cCCCCCeEeecCCCCCCHHHHH-HHHcccccCCCCCCCC
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT-----CRVPISELRVRQCPLIGDTSVI-ALASMLVDDDRWYGSS 377 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-----~~~~L~~L~l~~~~~l~~~~~~-~l~~~~~~~~~~~~~~ 377 (488)
.++. .+++|++|++++ +.++..+...+.. ..+.|+.|++.+|+ +....+. .... .+++
T Consensus 258 ~~l~------~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~--------~l~~ 321 (332)
T 2ft3_A 258 AGLP------DLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFR--------CVTD 321 (332)
T ss_dssp TTGG------GCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGT--------TBCC
T ss_pred hhhh------cCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-ccccccCccccc--------ccch
Confidence 1111 126777777777 3555332222211 13567777777773 3311111 1111 5677
Q ss_pred ccEEeccCCC
Q 011317 378 IRLLDLYNCG 387 (488)
Q Consensus 378 L~~L~l~~~~ 387 (488)
|+.|++++|.
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 7777777664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=127.21 Aligned_cols=192 Identities=23% Similarity=0.252 Sum_probs=111.0
Q ss_pred CCCCEEEecCCCCCCHHHHHHhh-----CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCccchhHHHHHHh-
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRL- 284 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~- 284 (488)
++|++|++++| .++......+. .+++|+.|++++| .+++.+...+. .+++|++|+|++|.+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 45666666663 45544444333 2256666776664 45555554443 3456777777777777666655533
Q ss_pred --hcCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHHHH---hcCCCCCeEeecCCCCCCHH
Q 011317 285 --TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDT 358 (488)
Q Consensus 285 --~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~ 358 (488)
...++|++|++++| .+++.+...++.. ...++|++|+|++ +.+++.++..+. ..+++|+.|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 13466777777775 3665555444321 0116677777777 357766655443 24567778888777 77777
Q ss_pred HHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCC---ccEEE--ecCCC
Q 011317 359 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR---LRWLG--VTGSV 414 (488)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~---L~~L~--l~~~~ 414 (488)
+...++.++. .+++|++|++++|. |++.+...+.....+. |+.+. +.++.
T Consensus 227 g~~~l~~~L~-----~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 227 AALALARAAR-----EHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHHHHHH-----HCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHHHHHHH-----hCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 7766665433 46778888887776 7777776665522222 66665 55444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-15 Score=146.91 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=60.9
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|+++++..+.......+..+++|+.|+++++ .+... ..+..+++|+.|++++|.++......+.. +++
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~ 232 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMH 232 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSC--CCCTTCSSCCEEECTTSCCCEECTTTTTT--CTT
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccc--cccCCCcccCEEECCCCccCccChhhhcc--Ccc
Confidence 34445555554433332222222334555666665554 22211 13445556666666666554433322322 556
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
|+.|+++++. ++......+ ..+++|++|+|++ +.++...... ...+++|+.|++++|+
T Consensus 233 L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQ-IQVIERNAF---DNLQSLVEINLAH-NNLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTCC-CCEECTTSS---TTCTTCCEEECTT-SCCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred CCEEECCCCc-eeEEChhhh---cCCCCCCEEECCC-CCCCccChhH-hccccCCCEEEcCCCC
Confidence 6666666542 331111111 0125666666666 3444221111 1246677777777664
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-15 Score=146.20 Aligned_cols=133 Identities=23% Similarity=0.201 Sum_probs=59.4
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|++++++.+.......+..+++|+.|+++++ .+... ..+..+++|+.|++++|.++......+.. +++
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~ 243 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSS 243 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTT--CTT
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccc--ccccccccccEEECcCCcCcccCcccccC--ccC
Confidence 34445555554433333222222334555555655553 22221 23445556666666665554433332323 556
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
|+.|+++++. ++......+ . .+++|++|+++++ .++...... ...+++|+.|++++|+
T Consensus 244 L~~L~L~~n~-l~~~~~~~~-~--~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQ-VSLIERNAF-D--GLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSC-CCEECTTTT-T--TCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred CCEEEeCCCc-CceECHHHh-c--CCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 6666665542 321110011 0 1156666666663 443211111 1145667777776664
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-16 Score=148.92 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCCcCEEeccCCCCCChHH-HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 235 SNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
.+++|++|+++++ .+.... ...+..+++|++|++++|.+.......+.. +++|+.|+++++. ++...+.... .
T Consensus 99 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~~--~ 172 (306)
T 2z66_A 99 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNS-FQENFLPDIF--T 172 (306)
T ss_dssp TCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCE-EGGGEECSCC--T
T ss_pred CCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCc-cccccchhHH--h
Confidence 4556666666553 222221 134455666666666666554332222222 5666666666643 2211000111 1
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
.+++|++|+++++ .++......+. .+++|+.|++++| .++......+. .+++|+.|++++|. ++...
T Consensus 173 ~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~ 239 (306)
T 2z66_A 173 ELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLNH-IMTSK 239 (306)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCSBCCSGGGT---------TCTTCCEEECTTSC-CCBCS
T ss_pred hCcCCCEEECCCC-CcCCcCHHHhc-CCCCCCEEECCCC-ccCccChhhcc---------CcccCCEeECCCCC-CcccC
Confidence 2267777777774 45432222222 5788888888888 45432221222 67889999998887 66544
Q ss_pred HHHhhccCC-CCccEEEecCCC
Q 011317 394 FRWLKKPYF-PRLRWLGVTGSV 414 (488)
Q Consensus 394 ~~~l~~~~~-~~L~~L~l~~~~ 414 (488)
...+.. + ++|++|++++|+
T Consensus 240 ~~~~~~--~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 240 KQELQH--FPSSLAFLNLTQND 259 (306)
T ss_dssp SSSCCC--CCTTCCEEECTTCC
T ss_pred HHHHHh--hhccCCEEEccCCC
Confidence 444433 5 489999998886
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-15 Score=145.46 Aligned_cols=229 Identities=18% Similarity=0.184 Sum_probs=160.9
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
..++++.|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+|+++. ..
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~ 136 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNS---------IRQIEVGAFNGLASLNTLELFDNW------LT 136 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSC------CS
T ss_pred CCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCc---------cCCcChhhccCcccCCEEECCCCc------CC
Confidence 35789999999888776433333 378999999999984 554444567789999999997643 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+.... +..+++|+.|+++++ .+... ....+..+++|+.|+++++..+...... ....+++|++|+++++ .+
T Consensus 137 ~~~~~~----~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l 208 (452)
T 3zyi_A 137 VIPSGA----FEYLSKLRELWLRNN-PIESI-PSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NI 208 (452)
T ss_dssp BCCTTT----SSSCTTCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CC
T ss_pred ccChhh----hcccCCCCEEECCCC-Cccee-CHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cc
Confidence 232221 245889999999984 56533 2223456899999999986654432211 2346789999999985 44
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
... ..+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.......+.. +++|+.|+++++. ++...
T Consensus 209 ~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~ 282 (452)
T 3zyi_A 209 KDM--PNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHNN-LSSLP 282 (452)
T ss_dssp SSC--CCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSC-CSCCC
T ss_pred ccc--ccccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCCc-CCccC
Confidence 432 24668899999999995 666666677889999999999999887655444444 8999999999864 54211
Q ss_pred HHHHhccCCCCCeeEEecCCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLP 327 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~ 327 (488)
...+ ..+++|++|++++++
T Consensus 283 ~~~~---~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLF---TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSS---TTCTTCCEEECCSSC
T ss_pred hHHh---ccccCCCEEEccCCC
Confidence 1111 123899999999854
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=132.79 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+.. ...
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~~-----l~~ 95 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNV---------LARIDAAAFTGLALLEQLDLSDNAQ-----LRS 95 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSCTT-----CCC
T ss_pred CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCc---------cceeCHhhcCCccCCCEEeCCCCCC-----ccc
Confidence 4567777777666554332222 356777777777763 3332333455666777777754321 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.... ...+++|++|+++++ .+.... ...+..+++|++|+++++.. .... ......+++|++|+++++ .+.
T Consensus 96 ~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n-~l~ 166 (285)
T 1ozn_A 96 VDPAT----FHGLGRLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNAL-QALP-DDTFRDLGNLTHLFLHGN-RIS 166 (285)
T ss_dssp CCTTT----TTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSS-CCC
T ss_pred cCHHH----hcCCcCCCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCcc-cccC-HhHhccCCCccEEECCCC-ccc
Confidence 11111 123566666666663 333221 11123455566666655431 1100 001123444555555442 222
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
..+...+..+++|+.|+++++ .+.......+..+++|+.|++++|.++......+.. +++|+.|++++
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~ 234 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP--LRALQYLRLND 234 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT--CTTCCEEECCS
T ss_pred ccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHccc--CcccCEEeccC
Confidence 211112334444444444443 233333333444444444444444444333222222 44444444444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-15 Score=144.72 Aligned_cols=229 Identities=17% Similarity=0.166 Sum_probs=159.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
..++++.|+|+.+.+.......+ ..+++|++|+|++|. ++......+..+++|++|+|+++. ..
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~i~~~~~~~l~~L~~L~L~~n~------l~ 125 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNH---------IRTIEIGAFNGLANLNTLELFDNR------LT 125 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSC---------CCEECGGGGTTCSSCCEEECCSSC------CS
T ss_pred CCCCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCc---------CCccChhhccCCccCCEEECCCCc------CC
Confidence 35789999999887776443333 378999999999984 555445567889999999997643 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+.... +..+++|+.|+++++ .+... ....+..+++|++|+++++..+..... .....+++|++|+++++ .+
T Consensus 126 ~~~~~~----~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l 197 (440)
T 3zyj_A 126 TIPNGA----FVYLSKLKELWLRNN-PIESI-PSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC-NL 197 (440)
T ss_dssp SCCTTT----SCSCSSCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS-CC
T ss_pred eeCHhH----hhccccCceeeCCCC-ccccc-CHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC-cC
Confidence 232211 245789999999984 55543 122245689999999998655443221 12446789999999985 44
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
... ..+..+++|+.|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++...
T Consensus 198 ~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~ 271 (440)
T 3zyj_A 198 REI--PNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN--LQSLVEINLAHNN-LTLLP 271 (440)
T ss_dssp SSC--CCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT--CTTCCEEECTTSC-CCCCC
T ss_pred ccc--cccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcC--CCCCCEEECCCCC-CCccC
Confidence 422 23568899999999996 676666677889999999999999887655544444 8999999999964 54211
Q ss_pred HHHHhccCCCCCeeEEecCCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLP 327 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~ 327 (488)
...+ . .+++|+.|++++++
T Consensus 272 ~~~~-~--~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLF-T--PLHHLERIHLHHNP 290 (440)
T ss_dssp TTTT-S--SCTTCCEEECCSSC
T ss_pred hhHh-c--cccCCCEEEcCCCC
Confidence 1111 1 23899999999854
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-15 Score=157.73 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+|+.|.+..-....+ ..+++|++|+|++|. ++......|..+++|++|+++.+. .
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~---------l~~l~~~~f~~L~~L~~L~Ls~N~------l 136 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP---------IQSLALGAFSGLSSLQKLVAVETN------L 136 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC---------CCEECGGGGTTCTTCCEEECTTSC------C
T ss_pred hCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCc---------CCCCCHHHhcCCCCCCEEECCCCc------C
Confidence 347888888888776654322222 368888888888884 444344457788899999987543 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
..+.... +..+++|++|+++++ .+........+..+++|++|+++++.
T Consensus 137 ~~l~~~~----~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 137 ASLENFP----IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCSTTCC----CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCChhh----hhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 2222211 245788999999884 55432233334668899999998764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-13 Score=126.95 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=141.9
Q ss_pred CCCcCEEeccCCCCCChHHHHhhc-----CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHh
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 310 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 310 (488)
.++|+.|++++| .++......+. ..++|++|+|++|.+++.++..+.. .+++|+.|++++| .+++.+...++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCC-CCCHHHHHHHH
Confidence 578999999996 57777665554 3379999999999999988887776 6789999999997 58888777665
Q ss_pred cc--CCCCCeeEEecCCCCCCCHHHHHHHH---hcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccC
Q 011317 311 DG--TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 311 ~~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 385 (488)
.. ...++|++|++++| .+++.+...++ ..+++|++|++++| .+++.++..++..+. .+++|++|++++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~-----~~~~L~~L~Ls~ 220 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD-----RNRQLQELNVAY 220 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG-----GCSCCCEEECCS
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh-----cCCCcCeEECCC
Confidence 32 12278999999995 78887766654 46789999999999 799999888876554 678999999999
Q ss_pred CCCCCHHHHHHhhcc--CCCCccEEEecCCC-CHHHHHHHHh
Q 011317 386 CGGITQLAFRWLKKP--YFPRLRWLGVTGSV-NRDILDALAR 424 (488)
Q Consensus 386 ~~~i~~~~~~~l~~~--~~~~L~~L~l~~~~-~~~~~~~~~~ 424 (488)
|. +++.+...+..+ .+++|++|++++|. ....+..+..
T Consensus 221 N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 221 NG-AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 98 999877665431 37899999999996 4566666655
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-15 Score=137.41 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
+..+++|++|+++++..+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~--- 149 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNA-LQALPDDTF--- 149 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC--CcCCCEEECCCCc-ccccCHhHh---
Confidence 3345566666665543244433444555666666666666554332222222 5666666666543 221100001
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
..+++|++|+++++ .++......+. .+++|+.|++++| .++......+. .+++|+.|++++|. ++..
T Consensus 150 ~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~ 216 (285)
T 1ozn_A 150 RDLGNLTHLFLHGN-RISSVPERAFR-GLHSLDRLLLHQN-RVAHVHPHAFR---------DLGRLMTLYLFANN-LSAL 216 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCC
T ss_pred ccCCCccEEECCCC-cccccCHHHhc-CccccCEEECCCC-cccccCHhHcc---------CcccccEeeCCCCc-CCcC
Confidence 11266777777763 45422111111 4778888888887 55543222222 67788888888886 6665
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
....+.. +++|+.|++++|+
T Consensus 217 ~~~~~~~--l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 217 PTEALAP--LRALQYLRLNDNP 236 (285)
T ss_dssp CHHHHTT--CTTCCEEECCSSC
T ss_pred CHHHccc--CcccCEEeccCCC
Confidence 4445544 7888888888876
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.9e-16 Score=144.66 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=55.2
Q ss_pred CCCcEEEeecCccCh--hHHHHHHhcCCCccEEeccC-CCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 68 PGIQKLCLSVDYITD--AMVGTISQGLVSLTHLDLRD-APLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.+++.|+++++.+.. .....+ ..+++|++|++++ +. ++......++.+++|++|+++.+.-.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~---------l~~~~p~~l~~l~~L~~L~Ls~n~l~----- 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINN---------LVGPIPPAIAKLTQLHYLYITHTNVS----- 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETT---------EESCCCGGGGGCTTCSEEEEEEECCE-----
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCc---------ccccCChhHhcCCCCCEEECcCCeeC-----
Confidence 578888888776654 333333 3678888888874 42 33323344666777777777643211
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
..+.. ....+++|++|+++++ .+... ++..+..+++|++|+++++
T Consensus 115 ~~~p~-----~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 115 GAIPD-----FLSQIKTLVTLDFSYN-ALSGT-LPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EECCG-----GGGGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCSS
T ss_pred CcCCH-----HHhCCCCCCEEeCCCC-ccCCc-CChHHhcCCCCCeEECcCC
Confidence 01111 1134666666666663 33211 1111234555555555544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-16 Score=146.96 Aligned_cols=253 Identities=12% Similarity=0.040 Sum_probs=165.8
Q ss_pred CCccEEeccCCCCCCCccccccCh--HHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCC
Q 011317 93 VSLTHLDLRDAPLIEPRITFDLTN--SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF 170 (488)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~--~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 170 (488)
.++++|+++++. ++. .....+..+++|++|+++++.... ..+.. ....+++|++|+++++
T Consensus 50 ~~l~~L~L~~~~---------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~-----~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLN---------LPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPP-----AIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCC---------CSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCG-----GGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCC---------ccCCcccChhHhCCCCCCeeeCCCCCccc----ccCCh-----hHhcCCCCCEEECcCC
Confidence 689999999984 443 334568889999999997421111 01111 1246899999999984
Q ss_pred CCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC-CcCEEeccCCCC
Q 011317 171 CRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKN 249 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 249 (488)
.+... ++..+..+++|++|+++++..... +......+++|++|+++++ .+.......+..++ +|+.|+++++ .
T Consensus 112 -~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N-~ 185 (313)
T 1ogq_A 112 -NVSGA-IPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRN-R 185 (313)
T ss_dssp -CCEEE-CCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSS-E
T ss_pred -eeCCc-CCHHHhCCCCCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCC-e
Confidence 55432 222246789999999998753211 1123457889999999985 44322223456777 9999999985 4
Q ss_pred CChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCC
Q 011317 250 LGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHL 329 (488)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l 329 (488)
+.......+..++ |+.|++++|.+.......+.. +++|+.|+++++. ++... ..+ ..+++|++|+++++ .+
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~-~~~---~~l~~L~~L~Ls~N-~l 256 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNS-LAFDL-GKV---GLSKNLNGLDLRNN-RI 256 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSE-ECCBG-GGC---CCCTTCCEEECCSS-CC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCc-eeeec-Ccc---cccCCCCEEECcCC-cc
Confidence 4444444566666 999999999877544443444 8999999999975 43110 011 22389999999995 56
Q ss_pred CHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCC
Q 011317 330 SDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 390 (488)
Q Consensus 330 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 390 (488)
+......+. .+++|+.|++++| .++... ... . .+++|+.+++++|+.+.
T Consensus 257 ~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~i-p~~-~--------~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 257 YGTLPQGLT-QLKFLHSLNVSFN-NLCGEI-PQG-G--------NLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCCGGGG-GCTTCCEEECCSS-EEEEEC-CCS-T--------TGGGSCGGGTCSSSEEE
T ss_pred cCcCChHHh-cCcCCCEEECcCC-cccccC-CCC-c--------cccccChHHhcCCCCcc
Confidence 522222222 6899999999999 554211 111 1 67889999999987543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-15 Score=142.27 Aligned_cols=229 Identities=17% Similarity=0.107 Sum_probs=101.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHH--HHhhhcCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG--LQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.++|++|+++++.+..... .....+++|++|++++|. ++..+ ...+..+++|++|+++.+.-
T Consensus 27 ~~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~i------ 90 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNG---------LSFKGCCSQSDFGTTSLKYLDLSFNGV------ 90 (306)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC---------CCEEEEEEHHHHSCSCCCEEECCSCSE------
T ss_pred CCCCCEEECCCCccCccCH-hHhhccccCCEEECCCCc---------cCcccCcccccccccccCEEECCCCcc------
Confidence 4577777777666553211 112356777777777763 33211 22344566777777754321
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+... ...+++|++|+++++ .+........+..+++|++|+++++.
T Consensus 91 ~~l~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--------------------------- 137 (306)
T 2z66_A 91 ITMSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--------------------------- 137 (306)
T ss_dssp EEEEEE-----EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC---------------------------
T ss_pred ccChhh-----cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc---------------------------
Confidence 111110 123566666666663 33221110112344555555555443
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCCh-HHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 303 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 303 (488)
+.......+..+++|+.|+++++ .+.. .....+..+++|++|++++|.++......+.. +++|+.|+++++. ++.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~ 213 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMSHNN-FFS 213 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSC-CSB
T ss_pred CCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC--CCCCCEEECCCCc-cCc
Confidence 11111112234455555555543 2221 11223344555555555555444332222222 5555555555543 221
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC-CCCCeEeecCCC
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCP 353 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~ 353 (488)
.....+ ..+++|++|+++++ .++......+. .+ ++|+.|++++|+
T Consensus 214 ~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPY---KCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGG---TTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCC
T ss_pred cChhhc---cCcccCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCC
Confidence 100001 01256666666663 44322222122 23 367777776663
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=140.39 Aligned_cols=244 Identities=18% Similarity=0.129 Sum_probs=133.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|++++|.+..- ...+++|++|+|++|. ++. ++. .+++|++|+++.+. ...
T Consensus 60 ~~~L~~L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~---------l~~--lp~--~l~~L~~L~Ls~N~------l~~ 115 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ---------LTS--LPV--LPPGLLELSIFSNP------LTH 115 (622)
T ss_dssp CTTCSEEEECSCCCSCC-----CCCCTTCCEEEECSCC---------CSC--CCC--CCTTCCEEEECSCC------CCC
T ss_pred CCCCcEEEecCCCCCCC-----CCcCCCCCEEEcCCCc---------CCc--CCC--CCCCCCEEECcCCc------CCC
Confidence 47888888887776631 1257888888888874 322 111 56788888886542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. .+++|+.|+++++ .++.. ...+++|++|++++|.. +. +....++|+.|+++++ .+.
T Consensus 116 l~~--------~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N-~l~ 174 (622)
T 3g06_A 116 LPA--------LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQL-AS-----LPALPSELCKLWAYNN-QLT 174 (622)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS-CCS
T ss_pred CCC--------CCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCcC-CC-----cCCccCCCCEEECCCC-CCC
Confidence 221 3567888888774 44431 12347777777776642 21 1123457777777764 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
..+ ..+++|+.|+++++ .+.... ...++|+.|++++|.++... . .+++|+.|++++|. ++.
T Consensus 175 ~l~----~~~~~L~~L~Ls~N-~l~~l~----~~~~~L~~L~L~~N~l~~l~-----~-~~~~L~~L~Ls~N~-L~~--- 235 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDN-QLASLP----TLPSELYKLWAYNNRLTSLP-----A-LPSGLKELIVSGNR-LTS--- 235 (622)
T ss_dssp CCC----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSSCC-----C-CCTTCCEEECCSSC-CSC---
T ss_pred CCc----ccCCCCcEEECCCC-CCCCCC----CccchhhEEECcCCcccccC-----C-CCCCCCEEEccCCc-cCc---
Confidence 211 34567777777764 333211 12456777777776555321 1 24567777776653 332
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
+.. .+++|++|+++++ .++.-. ..+++|+.|++++| .++. +..-.. .+++|+.|++++|
T Consensus 236 --lp~--~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N-~L~~--lp~~l~--------~l~~L~~L~L~~N 294 (622)
T 3g06_A 236 --LPV--LPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTR--LPESLI--------HLSSETTVNLEGN 294 (622)
T ss_dssp --CCC--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCCS--CCGGGG--------GSCTTCEEECCSC
T ss_pred --CCC--CCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCC-CCCc--CCHHHh--------hccccCEEEecCC
Confidence 111 1256667777663 444111 13566666666666 4441 111111 5566666666666
Q ss_pred CCCCHHHHHH
Q 011317 387 GGITQLAFRW 396 (488)
Q Consensus 387 ~~i~~~~~~~ 396 (488)
+ ++......
T Consensus 295 ~-l~~~~~~~ 303 (622)
T 3g06_A 295 P-LSERTLQA 303 (622)
T ss_dssp C-CCHHHHHH
T ss_pred C-CCCcCHHH
Confidence 6 66544443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-15 Score=139.17 Aligned_cols=126 Identities=26% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCc
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 290 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 290 (488)
+++|++|+++++ .+... ...+..+++|++|+++++ .+... ...+..+++|++|++++|.+.......+. .+++|
T Consensus 182 l~~L~~L~L~~n-~l~~l-p~~l~~l~~L~~L~L~~N-~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSL-PASIANLQNLKSLKIRNS-PLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPL 255 (328)
T ss_dssp STTCCEEEEEEE-CCCCC-CGGGGGCTTCCEEEEESS-CCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCC
T ss_pred CCCCCEEECcCC-CcCcc-hHhhcCCCCCCEEEccCC-CCCcC-chhhccCCCCCEEECcCCcchhhhHHHhc--CCCCC
Confidence 567777777664 33311 122556777777777775 33322 22456677777777777655433222222 37778
Q ss_pred cEEecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCC
Q 011317 291 VKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 291 ~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
+.|++++|...+ +..+..+ ++|++|++++|+... +..+. .+++|+.+.+..+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l------~~L~~L~L~~n~~~~~iP~~l~----~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRL------TQLEKLDLRGCVNLSRLPSLIA----QLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGC------TTCCEEECTTCTTCCCCCGGGG----GSCTTCEEECCGG
T ss_pred CEEECCCCCchhhcchhhhcC------CCCCEEeCCCCCchhhccHHHh----hccCceEEeCCHH
Confidence 888887765443 2222222 778888888865443 23333 5788888887654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=111.05 Aligned_cols=108 Identities=19% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
.+|++|++++|. +++.++..+. .|++|+.|++++|..++|.++..++.... .+++|++|+|++|.+||+.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-----~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLEN-----LQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHH-----HHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhccc-----ccCCCCEEEcCCCCcCCHHHHH
Confidence 457778887764 7777777664 57788888888887788888777774100 1356888888888778888887
Q ss_pred HhhccCCCCccEEEecCCCC--H--HHHHHHHhhCCCceee
Q 011317 396 WLKKPYFPRLRWLGVTGSVN--R--DILDALARSRPFLNVA 432 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~~--~--~~~~~~~~~~~~l~~~ 432 (488)
.+.. |++|++|++++|+. . ..+..+....|.+++.
T Consensus 134 ~L~~--~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 134 ALHH--FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp HGGG--CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred HHhc--CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 7765 78888888888762 2 2355666777777664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=113.24 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=56.4
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc---CCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG---TSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+|++|++++|.+++.++..+.. +++|++|++++|..+++.++..++.. + ++|++|+|++|.++|+.++..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~--~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~--~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQ--KSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT--CSCCCEEEEESCTTCCHHHHHHHHTCHHHH--HHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCCccHHHHHHhcC--CCCCCEEEeCCCCccCHHHHHHHHhccccc--CCCCEEEcCCCCcCCHHHHHHHh-
Confidence 4666666666666666655533 66666666666666666666666532 2 35666666666666666666655
Q ss_pred cCCCCCeEeecCCCCCCHHH
Q 011317 340 CRVPISELRVRQCPLIGDTS 359 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~ 359 (488)
.|++|+.|+|++|+.+++.+
T Consensus 137 ~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHH
T ss_pred cCCCCCEEECCCCCCCCchH
Confidence 35666666666666666554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-14 Score=136.56 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=155.8
Q ss_pred HHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHh
Q 011317 154 LMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL 233 (488)
Q Consensus 154 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 233 (488)
.+...+++|+.|+++++ .+..... ..+..+++|++|+++++......+ ...+++|++|+++++ .+. .+
T Consensus 28 ~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n-~l~-----~l 95 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQ-----EL 95 (317)
T ss_dssp HHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSS-EEE-----EE
T ss_pred HHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCC-ccc-----cc
Confidence 34455667888888874 5554322 234567888888888765311111 456788999999885 333 23
Q ss_pred hCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 234 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
...++|+.|+++++ .+..... ..+++|++|++++|.++......+.. +++|+.|+++++. ++......+....
T Consensus 96 ~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 LVGPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNE-IDTVNFAELAASS 168 (317)
T ss_dssp EECTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGG--GSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred cCCCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCCccchhhhc--cCCCCEEECCCCC-CCcccHHHHhhcc
Confidence 35689999999986 4544332 25789999999999887654433434 8999999999964 5533222232222
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
++|++|+++++ .++... ... .+++|+.|++++| .++..... +. .+++|+.|++++|. ++...
T Consensus 169 --~~L~~L~L~~N-~l~~~~--~~~-~l~~L~~L~Ls~N-~l~~l~~~-~~---------~l~~L~~L~L~~N~-l~~l~ 230 (317)
T 3o53_A 169 --DTLEHLNLQYN-FIYDVK--GQV-VFAKLKTLDLSSN-KLAFMGPE-FQ---------SAAGVTWISLRNNK-LVLIE 230 (317)
T ss_dssp --TTCCEEECTTS-CCCEEE--CCC-CCTTCCEEECCSS-CCCEECGG-GG---------GGTTCSEEECTTSC-CCEEC
T ss_pred --CcCCEEECCCC-cCcccc--ccc-ccccCCEEECCCC-cCCcchhh-hc---------ccCcccEEECcCCc-ccchh
Confidence 89999999995 565321 111 4789999999999 66542211 22 67899999999997 76421
Q ss_pred HHHhhccCCCCccEEEecCCCCH-HHHHHHHhhCCCce
Q 011317 394 FRWLKKPYFPRLRWLGVTGSVNR-DILDALARSRPFLN 430 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~ 430 (488)
..+. .+++|+.|++++|+.. ..+..+....|.++
T Consensus 231 -~~~~--~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 231 -KALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp -TTCC--CCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred -hHhh--cCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 1232 4899999999999754 44444444444443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=132.05 Aligned_cols=255 Identities=19% Similarity=0.116 Sum_probs=150.6
Q ss_pred CCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccC
Q 011317 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
+++.|+++++.+..- .. ...++|++|++++|. ++. ++. .+++|++|+++++. ...+.
T Consensus 41 ~l~~L~ls~n~L~~l-p~---~l~~~L~~L~L~~N~---------l~~--lp~--~l~~L~~L~Ls~N~------l~~lp 97 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PD---CLPAHITTLVIPDNN---------LTS--LPA--LPPELRTLEVSGNQ------LTSLP 97 (622)
T ss_dssp CCCEEECCSSCCSCC-CS---CCCTTCSEEEECSCC---------CSC--CCC--CCTTCCEEEECSCC------CSCCC
T ss_pred CCcEEEecCCCcCcc-Ch---hhCCCCcEEEecCCC---------CCC--CCC--cCCCCCEEEcCCCc------CCcCC
Confidence 466777776555421 11 123678888888874 321 111 46788888886543 22222
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 228 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 228 (488)
. .+++|+.|+++++ .++... ..+++|+.|+++++. ++. +....++|++|+++++ .+...
T Consensus 98 ~--------~l~~L~~L~Ls~N-~l~~l~-----~~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N-~l~~l 156 (622)
T 3g06_A 98 V--------LPPGLLELSIFSN-PLTHLP-----ALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDN-QLASL 156 (622)
T ss_dssp C--------CCTTCCEEEECSC-CCCCCC-----CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSCC
T ss_pred C--------CCCCCCEEECcCC-cCCCCC-----CCCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCC-cCCCc
Confidence 2 4677888888874 444321 146778888887764 221 1123478888888875 33321
Q ss_pred HHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHH
Q 011317 229 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 308 (488)
Q Consensus 229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 308 (488)
+ ..+++|+.|+++++ .++... ..+++|+.|++++|.++... . ..++|+.|.+++|. ++.
T Consensus 157 ~----~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l~-----~-~~~~L~~L~L~~N~-l~~----- 215 (622)
T 3g06_A 157 P----ALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASLP-----T-LPSELYKLWAYNNR-LTS----- 215 (622)
T ss_dssp C----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCC-----C-CCTTCCEEECCSSC-CSS-----
T ss_pred C----CccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCCC-----C-ccchhhEEECcCCc-ccc-----
Confidence 1 14567888888775 343322 35677888888888766411 1 35678888887754 331
Q ss_pred HhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCC
Q 011317 309 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 388 (488)
Q Consensus 309 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 388 (488)
+... +++|++|+++++ .++.-. ..+++|+.|++++| .++. +.. .+++|+.|++++|.
T Consensus 216 l~~~--~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~-----lp~--------~~~~L~~L~Ls~N~- 272 (622)
T 3g06_A 216 LPAL--PSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTS-----LPM--------LPSGLLSLSVYRNQ- 272 (622)
T ss_dssp CCCC--CTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSSC-
T ss_pred cCCC--CCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCc-----CCc--------ccccCcEEeCCCCC-
Confidence 1111 267888888874 555311 35678888888887 5542 222 45678888888886
Q ss_pred CCHHHHHHhhccCCCCccEEEecCCC
Q 011317 389 ITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 389 i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
++.. ...+.. +++|+.|++++|+
T Consensus 273 L~~l-p~~l~~--l~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 LTRL-PESLIH--LSSETTVNLEGNP 295 (622)
T ss_dssp CCSC-CGGGGG--SCTTCEEECCSCC
T ss_pred CCcC-CHHHhh--ccccCEEEecCCC
Confidence 6632 123433 7888888888886
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-15 Score=138.67 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=110.1
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
++++.|+++++ .+... ... +..+++|++|+++++.. . .+......+++|++|+++++ .+... ...+..+++|
T Consensus 81 ~~l~~L~L~~n-~l~~l-p~~-l~~l~~L~~L~L~~n~l-~--~lp~~~~~l~~L~~L~Ls~n-~l~~l-p~~l~~l~~L 152 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQF-PDQ-AFRLSHLQHMTIDAAGL-M--ELPDTMQQFAGLETLTLARN-PLRAL-PASIASLNRL 152 (328)
T ss_dssp TTCCEEEEESS-CCSSC-CSC-GGGGTTCSEEEEESSCC-C--CCCSCGGGGTTCSEEEEESC-CCCCC-CGGGGGCTTC
T ss_pred cceeEEEccCC-Cchhc-Chh-hhhCCCCCEEECCCCCc-c--chhHHHhccCCCCEEECCCC-ccccC-cHHHhcCcCC
Confidence 45555555552 33311 111 12355555555555432 1 11111234456666666553 23211 1124456666
Q ss_pred CEEeccCCCCCChHHH--------HhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH--HHHHHH
Q 011317 240 KVLDLRDCKNLGDEAL--------RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISAL 309 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~l 309 (488)
++|++++|........ ..+..+++|++|++++|.++.. ...+. .+++|+.|++++|. ++. ..+.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~--~l~~L~~L~L~~N~-l~~l~~~l~-- 226 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIA--NLQNLKSLKIRNSP-LSALGPAIH-- 226 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGG--GCTTCCEEEEESSC-CCCCCGGGG--
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhc--CCCCCCEEEccCCC-CCcCchhhc--
Confidence 6666666433322111 0123467777777777765521 11233 36777777777754 331 1111
Q ss_pred hccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCC
Q 011317 310 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 389 (488)
Q Consensus 310 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 389 (488)
.+++|++|++++|..... .... ...+++|+.|++++|...... ...+. .+++|++|++++|..
T Consensus 227 ----~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~~-p~~~~---------~l~~L~~L~L~~n~~- 289 (328)
T 4fcg_A 227 ----HLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDCSNLLTL-PLDIH---------RLTQLEKLDLRGCVN- 289 (328)
T ss_dssp ----GCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTCTTCCBC-CTTGG---------GCTTCCEEECTTCTT-
T ss_pred ----cCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCCCchhhc-chhhh---------cCCCCCEEeCCCCCc-
Confidence 126777777777543321 1111 125677888888877433211 11121 677888888888773
Q ss_pred CHHHHHHhhccCCCCccEEEecCCC
Q 011317 390 TQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 390 ~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.......+.. +++|+.+.+..+.
T Consensus 290 ~~~iP~~l~~--L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 290 LSRLPSLIAQ--LPANCIILVPPHL 312 (328)
T ss_dssp CCCCCGGGGG--SCTTCEEECCGGG
T ss_pred hhhccHHHhh--ccCceEEeCCHHH
Confidence 3333344443 7788888776553
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=132.39 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=140.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++.+.+..- ....++|++|++++|. ++. ++.++.+++|++|+++++. ...
T Consensus 110 ~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~---------l~~--lp~~~~l~~L~~L~l~~N~------l~~ 167 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQ---------LEK--LPELQNSSFLKIIDVDNNS------LKK 167 (454)
T ss_dssp CTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSC---------CSS--CCCCTTCTTCCEEECCSSC------CSC
T ss_pred cCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCC---------CCC--CcccCCCCCCCEEECCCCc------Ccc
Confidence 46777777776665531 1122578888887773 332 2346778888888886542 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. ..++|++|+++++ .+... +. +..+++|++|+++++.. .. +....++|++|+++++ .+.
T Consensus 168 lp~--------~~~~L~~L~L~~n-~l~~l--~~-~~~l~~L~~L~l~~N~l-~~-----l~~~~~~L~~L~l~~n-~l~ 228 (454)
T 1jl5_A 168 LPD--------LPPSLEFIAAGNN-QLEEL--PE-LQNLPFLTAIYADNNSL-KK-----LPDLPLSLESIVAGNN-ILE 228 (454)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSSC--CC-CTTCTTCCEEECCSSCC-SS-----CCCCCTTCCEEECCSS-CCS
T ss_pred cCC--------CcccccEEECcCC-cCCcC--cc-ccCCCCCCEEECCCCcC-Cc-----CCCCcCcccEEECcCC-cCC
Confidence 211 1347888888874 44432 22 35577888888877642 21 1122357888888775 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
.. ..+..+++|+.|+++++ .+.... ...++|+.|++++|.+... .. ..++|+.|++++|. ++.
T Consensus 229 ~l--p~~~~l~~L~~L~l~~N-~l~~l~----~~~~~L~~L~l~~N~l~~l-----~~-~~~~L~~L~ls~N~-l~~--- 291 (454)
T 1jl5_A 229 EL--PELQNLPFLTTIYADNN-LLKTLP----DLPPSLEALNVRDNYLTDL-----PE-LPQSLTFLDVSENI-FSG--- 291 (454)
T ss_dssp SC--CCCTTCTTCCEEECCSS-CCSSCC----SCCTTCCEEECCSSCCSCC-----CC-CCTTCCEEECCSSC-CSE---
T ss_pred cc--cccCCCCCCCEEECCCC-cCCccc----ccccccCEEECCCCccccc-----Cc-ccCcCCEEECcCCc-cCc---
Confidence 22 13557778888888775 333211 1236777777777765531 11 24567777777653 332
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
+.. ..++|++|+++++ .++.- ....++|+.|++++| .++. +.. .+++|++|++++|
T Consensus 292 --l~~--~~~~L~~L~l~~N-~l~~i-----~~~~~~L~~L~Ls~N-~l~~-----lp~--------~~~~L~~L~L~~N 347 (454)
T 1jl5_A 292 --LSE--LPPNLYYLNASSN-EIRSL-----CDLPPSLEELNVSNN-KLIE-----LPA--------LPPRLERLIASFN 347 (454)
T ss_dssp --ESC--CCTTCCEEECCSS-CCSEE-----CCCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSS
T ss_pred --ccC--cCCcCCEEECcCC-cCCcc-----cCCcCcCCEEECCCC-cccc-----ccc--------cCCcCCEEECCCC
Confidence 000 1146666666663 44321 111136666666666 3432 111 3456666666666
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++. +.. .+++|++|++++|.
T Consensus 348 ~-l~~-----lp~-~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 348 H-LAE-----VPE-LPQNLKQLHVEYNP 368 (454)
T ss_dssp C-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred c-ccc-----ccc-hhhhccEEECCCCC
Confidence 5 442 111 25566666666553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-14 Score=142.70 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccc
Q 011317 92 LVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRS 136 (488)
Q Consensus 92 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 136 (488)
+++|++|+|++|. ++......+..+++|++|+|+++
T Consensus 33 ~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N 68 (487)
T 3oja_A 33 AWNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSN 68 (487)
T ss_dssp GGGCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTS
T ss_pred CCCccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCC
Confidence 3467777776663 33333334556666666666543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-14 Score=130.50 Aligned_cols=208 Identities=16% Similarity=0.089 Sum_probs=113.6
Q ss_pred cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHH--HHHHHHH-hCCCCceEEecCCCCCC
Q 011317 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDT--GFKTILH-SCSNLYKLRVSHGTQLT 200 (488)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~ 200 (488)
.+++|++|+++++.-.. .+.... +...+++|++|+++++ .+... .+..+.. .+++|++|+++++.. .
T Consensus 93 ~l~~L~~L~L~~n~l~~-----~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~ 162 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG-----TAPPPL---LEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS-L 162 (312)
T ss_dssp TTSCCCEEEEEEEBCBS-----CCCCCS---SSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC-C
T ss_pred CcCCccEEEccCCcccc-----hhHHHH---HHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC-c
Confidence 56777777776543110 011000 0134677788888773 44432 1211111 026788888876642 2
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHH-HHHh--hCCCCcCEEeccCCCCCCh---HHHHhhcCCCCccEEEeCCCcc
Q 011317 201 DLVFHDISATSLSLTHVCLRWCNLLTNHA-IKSL--ASNTGIKVLDLRDCKNLGD---EALRAISSLPQLKILLLDGSDI 274 (488)
Q Consensus 201 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~i 274 (488)
.... .....+++|++|+++++...+..+ ...+ ..+++|++|+++++ .+.. .....+..+++|++|++++|.+
T Consensus 163 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 163 NFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred cchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 1110 123356788888888753222222 2233 57788888888875 4442 2223334677888888888876
Q ss_pred chhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCC
Q 011317 275 SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPL 354 (488)
Q Consensus 275 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 354 (488)
+......... .+++|+.|+++++. ++ .+..... ++|++|++++ +.++... . ...+++|+.|++++| .
T Consensus 241 ~~~~~~~~~~-~l~~L~~L~Ls~N~-l~-----~ip~~~~-~~L~~L~Ls~-N~l~~~p--~-~~~l~~L~~L~L~~N-~ 307 (312)
T 1wwl_A 241 RDAAGAPSCD-WPSQLNSLNLSFTG-LK-----QVPKGLP-AKLSVLDLSY-NRLDRNP--S-PDELPQVGNLSLKGN-P 307 (312)
T ss_dssp CSSCCCSCCC-CCTTCCEEECTTSC-CS-----SCCSSCC-SEEEEEECCS-SCCCSCC--C-TTTSCEEEEEECTTC-T
T ss_pred Ccccchhhhh-hcCCCCEEECCCCc-cC-----hhhhhcc-CCceEEECCC-CCCCCCh--h-HhhCCCCCEEeccCC-C
Confidence 6533111111 35788888888754 44 1111111 6788888888 4665331 1 235788889999888 4
Q ss_pred CC
Q 011317 355 IG 356 (488)
Q Consensus 355 l~ 356 (488)
++
T Consensus 308 l~ 309 (312)
T 1wwl_A 308 FL 309 (312)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-13 Score=124.50 Aligned_cols=103 Identities=25% Similarity=0.295 Sum_probs=45.1
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
+++|+.|+++++ .+... .. +..+++|++|+++++.. ..... ...+++|++|+++++ .+... ..+..+++
T Consensus 40 l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~i-~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQI-TDLAP---LKNLTKITELELSGN-PLKNV--SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCC-CCCGG---GTTCCSCCEEECCSC-CCSCC--GGGTTCTT
T ss_pred cCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCcC-CCChh---HccCCCCCEEEccCC-cCCCc--hhhcCCCC
Confidence 445666666663 33321 11 23456666666665432 11111 334455555555553 22221 12344555
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
|+.|+++++ .+... ..+..+++|++|++++|.++
T Consensus 109 L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 109 IKTLDLTST-QITDV--TPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CCEEECTTS-CCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-CCCCc--hhhcCCCCCCEEECCCCccC
Confidence 555555543 22221 12444455555555554443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-13 Score=128.21 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=78.0
Q ss_pred CCcEEEeecCccChhHHHHHHh--cCCCccEEeccCCCCCCCccccccChHHHHhh--hcCCCccEEEcccccccccccc
Q 011317 69 GIQKLCLSVDYITDAMVGTISQ--GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI--NQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.++.+.+....+++..+..+.. .+++|++|++++|. ++......+ ..+++|++|+++++. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~------i 129 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---------ITGTMPPLPLEATGLALSSLRLRNVS------W 129 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---------CBSCCCCCSSSCCCBCCSSCEEESCC------C
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---------eccchhhhhhhccCCCCCEEEeeccc------c
Confidence 4677777776666655544433 45678888888874 333222233 566777777776432 1
Q ss_pred cc-cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHH--HHhcCCCCCEEEecC
Q 011317 145 RR-VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD--ISATSLSLTHVCLRW 221 (488)
Q Consensus 145 ~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~ 221 (488)
.. ........+ ..+++|++|+++++ .+... ....+..+++|++|+++++.......+.. ....+++|++|++++
T Consensus 130 ~~~~~~~~~~~~-~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 130 ATGRSWLAELQQ-WLKPGLKVLSIAQA-HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp SSTTSSHHHHHT-TBCSCCCEEEEECC-SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred cchhhhhHHHHh-hhccCCCEEEeeCC-Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 11 000111111 24667777777763 44322 11112345666666666654322222211 112445566666655
Q ss_pred CCCCCHHH---HHHhhCCCCcCEEeccCC
Q 011317 222 CNLLTNHA---IKSLASNTGIKVLDLRDC 247 (488)
Q Consensus 222 ~~~~~~~~---~~~l~~~~~L~~L~l~~~ 247 (488)
+ .+...+ ...+..+++|++|+++++
T Consensus 207 N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 207 T-GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp S-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred C-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 3 332111 111234555555555553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-14 Score=141.10 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=101.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+|+++.+.......+ ..+++|++|+|++|. ++... .+..+++|++|+++++. ...
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~---------l~~~~--~l~~l~~L~~L~Ls~N~------l~~ 94 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV---------LYETL--DLESLSTLRTLDLNNNY------VQE 94 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSC---------CEEEE--ECTTCTTCCEEECCSSE------EEE
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCC---------CCCCc--ccccCCCCCEEEecCCc------CCC
Confidence 5688999999877776433333 378899999999884 33211 26778888888887542 122
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+. ..++|+.|+++++ .+..... ..+++|+.|+++++.. +... ......+++|+.|+++++ .+.
T Consensus 95 l~---------~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N-~l~ 157 (487)
T 3oja_A 95 LL---------VGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLN-EID 157 (487)
T ss_dssp EE---------ECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSSCC-CSGG-GBCGGGGSSEEEEECTTS-CCC
T ss_pred CC---------CCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCCCC-CCCC-chhhcCCCCCCEEECCCC-CCC
Confidence 21 2467888888874 4443211 2356677777766542 2110 001223455666666553 332
Q ss_pred HHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 227 NHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 227 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
......+. .+++|+.|+++++ .++.. .....+++|+.|++++|.++..... +.. +++|+.|+++++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~--l~~L~~L~Ls~N 224 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQS--AAGVTWISLRNN 224 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGG--GTTCSEEECTTS
T ss_pred CcChHHHhhhCCcccEEecCCC-ccccc--cccccCCCCCEEECCCCCCCCCCHh-HcC--CCCccEEEecCC
Confidence 22222222 4556666666554 23222 1222455555666655554432211 222 455555555553
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=124.09 Aligned_cols=259 Identities=18% Similarity=0.157 Sum_probs=174.6
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcC-CCccEEEcccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQH-GKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~~~~ 144 (488)
..++|++|+++++.+.. + ...+++|++|++++|. ++. +... ++|++|+++++. .
T Consensus 89 ~~~~L~~L~l~~n~l~~--l---p~~~~~L~~L~l~~n~---------l~~-----l~~~~~~L~~L~L~~n~------l 143 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE--L---PELPQSLKSLLVDNNN---------LKA-----LSDLPPLLEYLGVSNNQ------L 143 (454)
T ss_dssp CCTTCSEEECCSSCCSS--C---CCCCTTCCEEECCSSC---------CSC-----CCSCCTTCCEEECCSSC------C
T ss_pred CcCCCCEEEccCCcCCc--c---ccccCCCcEEECCCCc---------cCc-----ccCCCCCCCEEECcCCC------C
Confidence 35789999999877665 1 1245889999999884 322 2222 689999997653 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+.+ ...+++|++|+++++ .+... + ...++|++|+++++.. ... . -...+++|++|+++++ .
T Consensus 144 ~~lp~------~~~l~~L~~L~l~~N-~l~~l--p---~~~~~L~~L~L~~n~l-~~l--~-~~~~l~~L~~L~l~~N-~ 206 (454)
T 1jl5_A 144 EKLPE------LQNSSFLKIIDVDNN-SLKKL--P---DLPPSLEFIAAGNNQL-EEL--P-ELQNLPFLTAIYADNN-S 206 (454)
T ss_dssp SSCCC------CTTCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSSCC-SSC--C-CCTTCTTCCEEECCSS-C
T ss_pred CCCcc------cCCCCCCCEEECCCC-cCccc--C---CCcccccEEECcCCcC-CcC--c-cccCCCCCCEEECCCC-c
Confidence 22321 246889999999985 55431 1 2346899999998753 221 1 1457889999999985 3
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 304 (488)
+...+ ...++|+.|+++++ .+.. +..+..+++|++|++++|.+.... . ..++|+.|++++|. ++.
T Consensus 207 l~~l~----~~~~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N~l~~l~-----~-~~~~L~~L~l~~N~-l~~- 271 (454)
T 1jl5_A 207 LKKLP----DLPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNNLLKTLP-----D-LPPSLEALNVRDNY-LTD- 271 (454)
T ss_dssp CSSCC----CCCTTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSSCCSSCC-----S-CCTTCCEEECCSSC-CSC-
T ss_pred CCcCC----CCcCcccEEECcCC-cCCc--ccccCCCCCCCEEECCCCcCCccc-----c-cccccCEEECCCCc-ccc-
Confidence 33211 13468999999986 4443 224778999999999999776421 2 35789999999875 432
Q ss_pred HHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
+... .++|++|+++++ .++.-. ...++|+.|++++| .++. +.. ..++|++|+++
T Consensus 272 ----l~~~--~~~L~~L~ls~N-~l~~l~-----~~~~~L~~L~l~~N-~l~~-----i~~--------~~~~L~~L~Ls 325 (454)
T 1jl5_A 272 ----LPEL--PQSLTFLDVSEN-IFSGLS-----ELPPNLYYLNASSN-EIRS-----LCD--------LPPSLEELNVS 325 (454)
T ss_dssp ----CCCC--CTTCCEEECCSS-CCSEES-----CCCTTCCEEECCSS-CCSE-----ECC--------CCTTCCEEECC
T ss_pred ----cCcc--cCcCCEEECcCC-ccCccc-----CcCCcCCEEECcCC-cCCc-----ccC--------CcCcCCEEECC
Confidence 1111 278999999995 565311 12368999999999 5553 221 23589999999
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|. ++. +.. .+++|+.|++++|.
T Consensus 326 ~N~-l~~-----lp~-~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 326 NNK-LIE-----LPA-LPPRLERLIASFNH 348 (454)
T ss_dssp SSC-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred CCc-ccc-----ccc-cCCcCCEEECCCCc
Confidence 997 653 222 47899999999985
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-12 Score=120.43 Aligned_cols=189 Identities=24% Similarity=0.170 Sum_probs=93.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+++|++|+++++.. ...+ -...+++|++|+++++ .+..... +..+++|++|+++++. +... ..+..+++|
T Consensus 40 l~~L~~L~l~~~~i-~~l~---~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGV-TTIE---GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNP-LKNV--SAIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCC-CCCT---TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCC-CSCC--GGGTTCTTC
T ss_pred cCCcCEEEeeCCCc-cCch---hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCc-CCCc--hhhcCCCCC
Confidence 45666666665532 2111 1234566666666664 3322211 4566666666666642 3322 245556666
Q ss_pred cEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCC
Q 011317 265 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPI 344 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 344 (488)
++|++++|.++... .+. .+++|+.|++++|. ++.... + . .+++|++|+++++ .+++... ...+++|
T Consensus 110 ~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~-l~~~~~--l-~--~l~~L~~L~l~~n-~l~~~~~---l~~l~~L 175 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLA--GLSNLQVLYLDLNQ-ITNISP--L-A--GLTNLQYLSIGNA-QVSDLTP---LANLSKL 175 (308)
T ss_dssp CEEECTTSCCCCCG--GGT--TCTTCCEEECCSSC-CCCCGG--G-G--GCTTCCEEECCSS-CCCCCGG---GTTCTTC
T ss_pred CEEECCCCCCCCch--hhc--CCCCCCEEECCCCc-cCcCcc--c-c--CCCCccEEEccCC-cCCCChh---hcCCCCC
Confidence 66666666554422 122 36666666666643 321110 1 1 1156666666663 4432111 2245666
Q ss_pred CeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 345 SELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 345 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+.|++++| .+++... +. .+++|++|++++|. +++.. .+. .+++|+.|++++|.
T Consensus 176 ~~L~l~~n-~l~~~~~--l~---------~l~~L~~L~L~~N~-l~~~~--~l~--~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDN-KISDISP--LA---------SLPNLIEVHLKNNQ-ISDVS--PLA--NTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSS-CCCCCGG--GG---------GCTTCCEEECTTSC-CCBCG--GGT--TCTTCCEEEEEEEE
T ss_pred CEEECCCC-ccCcChh--hc---------CCCCCCEEEccCCc-cCccc--ccc--CCCCCCEEEccCCe
Confidence 66666666 4433221 11 55666666666665 44422 232 36666666666654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=122.51 Aligned_cols=208 Identities=16% Similarity=0.140 Sum_probs=132.4
Q ss_pred cCCCccEEeccCCCCCCCccccccChHHHHhh--hcCCCccEEEcccccccccccccccChHHHHHHHH-hCCCCCEEEE
Q 011317 91 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI--NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD-KCASMESICL 167 (488)
Q Consensus 91 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~L~~L~l 167 (488)
.+++|++|++++|. ++......+ ..+++|++|+++++. ...+. ..+..+.. .+++|++|++
T Consensus 93 ~l~~L~~L~L~~n~---------l~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~-~~~~~l~~~~~~~L~~L~L 156 (312)
T 1wwl_A 93 GISGLQELTLENLE---------VTGTAPPPLLEATGPDLNILNLRNVS------WATRD-AWLAELQQWLKPGLKVLSI 156 (312)
T ss_dssp TTSCCCEEEEEEEB---------CBSCCCCCSSSCCSCCCSEEEEESCB------CSSSS-SHHHHHHTTCCTTCCEEEE
T ss_pred CcCCccEEEccCCc---------ccchhHHHHHHhcCCCccEEEccCCC------Ccchh-HHHHHHHHhhcCCCcEEEe
Confidence 58899999998874 443222333 678899999997543 22221 22222221 1388999999
Q ss_pred cCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHH--hcCCCCCEEEecCCCCCC---HHHHHHhhCCCCcCEE
Q 011317 168 GGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDIS--ATSLSLTHVCLRWCNLLT---NHAIKSLASNTGIKVL 242 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L 242 (488)
+++ .+....... +..+++|++|+++++......++.... ..+++|++|+++++ .+. ......+..+++|+.|
T Consensus 157 ~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 157 AQA-HSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp ESC-SCCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEE
T ss_pred eCC-CCccchHHH-hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEE
Confidence 984 555432222 356889999999987644333332222 57789999999985 555 3333334578999999
Q ss_pred eccCCCCCChHH-HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEE
Q 011317 243 DLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQEL 321 (488)
Q Consensus 243 ~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L 321 (488)
+++++ .+.... ...+..+++|++|++++|.++... ..-.++|+.|+++++. ++... .+ ..+++|++|
T Consensus 234 ~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-----~~~~~~L~~L~Ls~N~-l~~~p--~~---~~l~~L~~L 301 (312)
T 1wwl_A 234 DLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-----KGLPAKLSVLDLSYNR-LDRNP--SP---DELPQVGNL 301 (312)
T ss_dssp ECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-----SSCCSEEEEEECCSSC-CCSCC--CT---TTSCEEEEE
T ss_pred ECCCC-cCCcccchhhhhhcCCCCEEECCCCccChhh-----hhccCCceEEECCCCC-CCCCh--hH---hhCCCCCEE
Confidence 99986 454433 334456789999999999877321 1012689999999864 55321 11 123899999
Q ss_pred ecCCCCCCC
Q 011317 322 DLSNLPHLS 330 (488)
Q Consensus 322 ~l~~~~~l~ 330 (488)
++++ +.++
T Consensus 302 ~L~~-N~l~ 309 (312)
T 1wwl_A 302 SLKG-NPFL 309 (312)
T ss_dssp ECTT-CTTT
T ss_pred eccC-CCCC
Confidence 9998 4555
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-13 Score=123.46 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 314 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 314 (488)
.+++|++|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|+++++. ++......+ ..
T Consensus 59 ~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~---~~ 131 (270)
T 2o6q_A 59 RLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ--LVNLAELRLDRNQ-LKSLPPRVF---DS 131 (270)
T ss_dssp SCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT--CSSCCEEECCSSC-CCCCCTTTT---TT
T ss_pred CCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc--ccCCCEEECCCCc-cCeeCHHHh---Cc
Confidence 4555555555543 233322233345555555555555444322222222 5556666665542 221100000 11
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 394 (488)
+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|++|++++|. ++....
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~ 198 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGAFD---------KLTELKTLKLDNNQ-LKRVPE 198 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC-CSCCCT
T ss_pred CcCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCC-cCcEeChhHhc---------cCCCcCEEECCCCc-CCcCCH
Confidence 266777777663 4442111111 24678888888777 44432211111 56788888888886 654333
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011317 395 RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+. .+++|+.|++++|+
T Consensus 199 ~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 GAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp TTTT--TCTTCCEEECCSSC
T ss_pred HHhc--cccCCCEEEecCCC
Confidence 3333 37888888888775
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=122.46 Aligned_cols=229 Identities=18% Similarity=0.163 Sum_probs=150.8
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHH--hCCCCceEEecCCCCCCHHHHHHHH-hcCCCCCEEEecCCCCCCH----HHHH
Q 011317 159 CASMESICLGGFCRVTDTGFKTILH--SCSNLYKLRVSHGTQLTDLVFHDIS-ATSLSLTHVCLRWCNLLTN----HAIK 231 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~ 231 (488)
...++.+.+.++ .++...+..+.. .+++|++|+++++..... ....+. ..+++|++|+++++ .+.. ....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNV-SWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecc-cccchhhhhHHH
Confidence 346889999985 666655554433 347799999998753211 111111 56789999999985 4432 2223
Q ss_pred HhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchh-HHHH-HHhhcCCCccEEecCCCCCCC--HHHHH
Q 011317 232 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDV-GVSY-LRLTVITSLVKLSLRGCKRLT--DKCIS 307 (488)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~-l~~~~~~~L~~L~l~~~~~l~--~~~~~ 307 (488)
.+..+++|++|+++++ .+.......+..+++|++|++++|.+... ++.. .....+++|++|++++|. ++ +....
T Consensus 140 ~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 217 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA 217 (310)
T ss_dssp HTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred HhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence 4558999999999986 56655566777899999999999986543 2211 111158899999999975 55 22222
Q ss_pred HHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC---CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 308 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 308 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
.+.... ++|++|+++++ .++......+. .+ ++|+.|++++| .++. +... -.++|+.|+++
T Consensus 218 ~l~~~l--~~L~~L~Ls~N-~l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~-----lp~~-------~~~~L~~L~Ls 280 (310)
T 4glp_A 218 ALAAAG--VQPHSLDLSHN-SLRATVNPSAP-RCMWSSALNSLNLSFA-GLEQ-----VPKG-------LPAKLRVLDLS 280 (310)
T ss_dssp HHHHHT--CCCSSEECTTS-CCCCCCCSCCS-SCCCCTTCCCEECCSS-CCCS-----CCSC-------CCSCCSCEECC
T ss_pred HHHhcC--CCCCEEECCCC-CCCccchhhHH-hccCcCcCCEEECCCC-CCCc-----hhhh-------hcCCCCEEECC
Confidence 222222 89999999994 66543211111 23 79999999999 6652 2221 34789999999
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|. ++.. ..+. .+++|+.|++++|+
T Consensus 281 ~N~-l~~~--~~~~--~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 281 SNR-LNRA--PQPD--ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCC-CCSC--CCTT--SCCCCSCEECSSTT
T ss_pred CCc-CCCC--chhh--hCCCccEEECcCCC
Confidence 998 7643 2233 48999999999886
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-13 Score=122.22 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=56.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 90 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE---------IQTIEDGAYQSLSHLSTLILTGNP------IQS 90 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCC---------CCEECTTTTTTCTTCCEEECTTCC------CCE
T ss_pred CCCccEEECCCCcccccCHhHh-ccccCCcEEECCCCc---------CCccCHHHccCCcCCCEEECCCCc------cCc
Confidence 3568888888776665332223 357888888888873 333233345667777777776432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
+... ....+++|++|+++++ .+....... +..+++|++|+++++
T Consensus 91 ~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 91 LALG----AFSGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN 134 (276)
T ss_dssp ECTT----TTTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS
T ss_pred cChh----hhcCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC
Confidence 1111 1134566777777663 332211100 233455555555544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-13 Score=124.76 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=72.8
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH----HHHHHHh
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD----KCISALF 310 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~----~~~~~l~ 310 (488)
.+++|++|+++++ .+.......+..+++|++|++++|.+.......+. .+++|+.|+++++. ++. ..+..+
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~l~~~~~~l- 148 (276)
T 2z62_A 74 SLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNL-IQSFKLPEYFSNL- 148 (276)
T ss_dssp TCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCSSC-CCCCCCCGGGGGC-
T ss_pred CCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcc--cCCCCCEEECcCCc-cceecCchhhccC-
Confidence 4455555555543 33333333444555555555555544332211122 25555555555542 221 111111
Q ss_pred ccCCCCCeeEEecCCCCCCCH---HHHHHHHhcCCCCC-eEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 311 DGTSKLQLQELDLSNLPHLSD---NGILTLATCRVPIS-ELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
++|++|+++++ .++. ..+..+. .++.|. .|++++| .++...... + ...+|+.|++++|
T Consensus 149 -----~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~~l~l~L~ls~n-~l~~~~~~~-----~-----~~~~L~~L~L~~n 210 (276)
T 2z62_A 149 -----TNLEHLDLSSN-KIQSIYCTDLRVLH-QMPLLNLSLDLSLN-PMNFIQPGA-----F-----KEIRLKELALDTN 210 (276)
T ss_dssp -----TTCCEEECCSS-CCCEECGGGGHHHH-TCTTCCEEEECCSS-CCCEECTTS-----S-----CSCCEEEEECCSS
T ss_pred -----CCCCEEECCCC-CCCcCCHHHhhhhh-hccccceeeecCCC-cccccCccc-----c-----CCCcccEEECCCC
Confidence 56666666663 4432 2233222 233333 6777776 444211100 0 3346788888877
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++......+. .+++|+.|++++|+
T Consensus 211 ~-l~~~~~~~~~--~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 Q-LKSVPDGIFD--RLTSLQKIWLHTNP 235 (276)
T ss_dssp C-CSCCCTTTTT--TCCSCCEEECCSSC
T ss_pred c-eeecCHhHhc--ccccccEEEccCCc
Confidence 6 5543322233 37788888887654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-12 Score=117.59 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccC
Q 011317 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
..+.++++++.+..- .. ...++|++|++++|. ++......+..+++|++|+++++. ...+.
T Consensus 17 ~~~~l~~~~~~l~~i-p~---~~~~~l~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~------l~~i~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PS---NIPADTKKLDLQSNK---------LSSLPSKAFHRLTKLRLLYLNDNK------LQTLP 77 (270)
T ss_dssp TTTEEECTTSCCSSC-CS---CCCTTCSEEECCSSC---------CSCCCTTSSSSCTTCCEEECCSSC------CSCCC
T ss_pred CCCEEEccCCCCCcc-CC---CCCCCCCEEECcCCC---------CCeeCHHHhcCCCCCCEEECCCCc------cCeeC
Confidence 455566655444421 00 013456777776663 333222335556666666665432 11121
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
.. .+..+++|++|+++++ .+.... ...+..+++|++|+++++
T Consensus 78 ~~----~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 78 AG----IFKELKNLETLWVTDN-KLQALP-IGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp TT----TTSSCTTCCEEECCSS-CCCCCC-TTTTTTCSSCCEEECCSS
T ss_pred hh----hhcCCCCCCEEECCCC-cCCcCC-HhHcccccCCCEEECCCC
Confidence 11 1133556666666653 333221 111233555555555544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.3e-13 Score=120.32 Aligned_cols=156 Identities=20% Similarity=0.131 Sum_probs=72.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|+++++ .+.. +..+..+++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++
T Consensus 61 ~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~ 134 (272)
T 3rfs_A 61 YLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK--LTN 134 (272)
T ss_dssp GCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTT
T ss_pred cCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc--CCC
Confidence 3445555555443 2221 123445566666666654 344333334455666666666666554322222222 556
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 369 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 369 (488)
|+.|++++|. ++......+ . .+++|++|+++++ .++..... ....+++|+.|++++| .++......+.
T Consensus 135 L~~L~L~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~----- 202 (272)
T 3rfs_A 135 LTYLNLAHNQ-LQSLPKGVF-D--KLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQN-QLKSVPDGVFD----- 202 (272)
T ss_dssp CCEEECCSSC-CCCCCTTTT-T--TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTT-----
T ss_pred CCEEECCCCc-cCccCHHHh-c--cCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCC-cCCccCHHHHh-----
Confidence 6666666542 321000000 1 1256666666663 34321111 1114566777777666 44321111111
Q ss_pred CCCCCCCCccEEeccCCC
Q 011317 370 DDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++|+
T Consensus 203 ----~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 203 ----RLTSLQYIWLHDNP 216 (272)
T ss_dssp ----TCTTCCEEECCSSC
T ss_pred ----CCcCCCEEEccCCC
Confidence 56667777777665
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-12 Score=115.93 Aligned_cols=177 Identities=15% Similarity=0.163 Sum_probs=121.2
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCc
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 290 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 290 (488)
+++|+.|.+.++ .+.. +..+..+++|++|+++++ .+.. +..+..+++|++|++++|.++......+.. +++|
T Consensus 40 l~~L~~L~l~~~-~i~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L 111 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKS--VQGIQYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDK--LTNL 111 (272)
T ss_dssp HTTCCEEECTTS-CCCC--CTTGGGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTT--CTTC
T ss_pred ccceeeeeeCCC-Cccc--ccccccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCCccCccChhHhcC--CcCC
Confidence 357777777764 2322 223668999999999996 4544 346779999999999999887544333334 8999
Q ss_pred cEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccC
Q 011317 291 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDD 370 (488)
Q Consensus 291 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 370 (488)
+.|++++|. ++......+ ..+++|++|+++++ .++...... ...+++|+.|++++| .++......+.
T Consensus 112 ~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~------ 178 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVF---DKLTNLTYLNLAHN-QLQSLPKGV-FDKLTNLTELDLSYN-QLQSLPEGVFD------ 178 (272)
T ss_dssp CEEECTTSC-CCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT------
T ss_pred CEEECCCCc-CCccCHHHh---ccCCCCCEEECCCC-ccCccCHHH-hccCccCCEEECCCC-CcCccCHHHhc------
Confidence 999999975 442111011 12389999999995 565322111 226899999999999 66532221122
Q ss_pred CCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 371 DRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 371 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 179 ---~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 179 ---KLTQLKDLRLYQNQ-LKSVPDGVFD--RLTSLQYIWLHDNP 216 (272)
T ss_dssp ---TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ---CCccCCEEECCCCc-CCccCHHHHh--CCcCCCEEEccCCC
Confidence 68999999999998 7654333344 48999999999875
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-12 Score=108.32 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=46.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+++|++|+++++. +...+ -...+++|++|+++++ .+... ..+..+++|++|+++++ .+.......+..+++|
T Consensus 43 l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT---GIEYAHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT---TGGGCTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCC-ccChH---HHhcCCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 4556666666543 22111 1234455555555554 22211 12334555555555553 3333333344445555
Q ss_pred cEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 265 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
++|++++|.+++.....+.. +++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~--l~~L~~L~L~~n 146 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINT--LPKVNSIDLSYN 146 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTT--CSSCCEEECCSC
T ss_pred CEEEecCCccCcHhHHHHhh--CCCCCEEEccCC
Confidence 55555555554433333333 444444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-12 Score=114.23 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=90.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++.+.+.......+ ..+++|++|++++|.. ++......+..+++|++|+++++.. ...
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~--------l~~i~~~~f~~l~~L~~L~l~~~n~-----l~~ 95 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVT--------LQQLESHSFYNLSKVTHIEIRNTRN-----LTY 95 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSS--------CCEECTTTEESCTTCCEEEEEEETT-----CCE
T ss_pred CCcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCC--------cceeCHhHcCCCcCCcEEECCCCCC-----eeE
Confidence 4578888888777665332222 3688888888888731 3322223456778888888864211 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCc---eEEecCCCCCCHHHHHHHHhcCCCCC-EEEecCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLY---KLRVSHGTQLTDLVFHDISATSLSLT-HVCLRWC 222 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~ 222 (488)
+... .+..+++|+.|+++++ .+... +. +..+++|+ .|+++++..+...+. .....+++|+ +|+++++
T Consensus 96 i~~~----~f~~l~~L~~L~l~~n-~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 96 IDPD----ALKELPLLKFLGIFNT-GLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp ECTT----SEECCTTCCEEEEEEE-CCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC
T ss_pred cCHH----HhCCCCCCCEEeCCCC-CCccc--cc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC
Confidence 2111 1134677888888773 44321 11 23455565 667666522221110 0122344555 5555542
Q ss_pred CCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCC-CCccEEEeCCCccc
Q 011317 223 NLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL-PQLKILLLDGSDIS 275 (488)
Q Consensus 223 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~i~ 275 (488)
.+...+...+.. ++|+.|+++++..+.......+..+ ++|+.|++++|.++
T Consensus 167 -~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 167 -GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred -CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 222111111112 4555555555322333333334444 55555555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=110.34 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+++|+.|+++++.. .... -...+++|++|+++++ .+..... +..+++|+.|+++++ .+.. +..+..+++|
T Consensus 45 l~~L~~L~l~~~~i-~~~~---~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDI-KSVQ---GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKD--LSSLKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCC-CCCT---TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCC--GGGGTTCTTC
T ss_pred cCcccEEEccCCCc-ccCh---hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCC--ChhhccCCCC
Confidence 56677777776542 2111 1334566666666664 3322211 456666666666664 3332 2235556666
Q ss_pred cEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 265 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
++|++++|.+... ..+. .+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~--~l~~L~~L~l~~n 144 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLV--HLPQLESLYLGNN 144 (291)
T ss_dssp CEEECTTSCCCCC--GGGG--GCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhc--CCCCCCEEEccCC
Confidence 6666666655442 1122 2555555555554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=104.13 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=89.9
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCcc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 291 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~ 291 (488)
++|++|+++++ .+...+ .+..+++|++|+++++ .+.. +..+..+++|++|++++|.++......+.. +++|+
T Consensus 44 ~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG--LTSLT 115 (197)
T ss_dssp HTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT--CTTCC
T ss_pred CCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECCccCcccChhhcC--CCCCC
Confidence 47777777774 343222 3556777788887776 3332 235667777788888777776544444444 77778
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCC
Q 011317 292 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 371 (488)
Q Consensus 292 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 371 (488)
.|++++|. ++......+. .+++|++|++++|..+++.. . ...+++|+.|++++| .+++.. .+.
T Consensus 116 ~L~Ls~n~-i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n-~i~~~~--~l~------- 178 (197)
T 4ezg_A 116 LLDISHSA-HDDSILTKIN---TLPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD-GVHDYR--GIE------- 178 (197)
T ss_dssp EEECCSSB-CBGGGHHHHT---TCSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB-CCCCCT--TGG-------
T ss_pred EEEecCCc-cCcHhHHHHh---hCCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC-CCcChH--Hhc-------
Confidence 88877753 5543333332 22677788887754344321 1 225777888888777 555422 222
Q ss_pred CCCCCCccEEeccCCC
Q 011317 372 RWYGSSIRLLDLYNCG 387 (488)
Q Consensus 372 ~~~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++|+
T Consensus 179 --~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 --DFPKLNQLYAFSQT 192 (197)
T ss_dssp --GCSSCCEEEECBC-
T ss_pred --cCCCCCEEEeeCcc
Confidence 56778888887776
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=108.80 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR 296 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~ 296 (488)
+..+|+|+.|.++++..+. +..+ .+++|++|.|..|.++...+..+....+|+|+.|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3456777777776642211 1112 3667777777777777777766664347777777764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-11 Score=109.19 Aligned_cols=103 Identities=22% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
+++|+.|+++++ .+... .. +..+++|++|+++++.. .... . ...+++|++|+++++ .+.. +..+..+++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n~l-~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKL-TDIK--P-LANLKNLGWLFLDEN-KVKD--LSSLKDLKK 113 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSS-CCCC--GGGGTTCTT
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCCcc-CCCc--c-cccCCCCCEEECCCC-cCCC--ChhhccCCC
Confidence 344555555553 33221 11 23355555555554432 1111 0 334455555555553 2222 112445555
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
|++|+++++ .+... ..+..+++|+.|++++|.++
T Consensus 114 L~~L~L~~n-~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 114 LKSLSLEHN-GISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CCEEECTTS-CCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-cCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 555555553 23221 23445555555555555444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-11 Score=120.52 Aligned_cols=169 Identities=22% Similarity=0.232 Sum_probs=114.7
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCC
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 262 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 262 (488)
..+++|+.|+++++.. ...+ -...+++|+.|+++++ .+.... .+..+++|+.|+|+++ .+.. +..+..++
T Consensus 40 ~~L~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI-KSVQ---GIQYLPNVTKLFLNGN-KLTDIK--PLTNLKNLGWLFLDEN-KIKD--LSSLKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCCC-CCCT---TGGGCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSS-CCCC--CTTSTTCT
T ss_pred hcCCCCCEEECcCCCC-CCCh---HHccCCCCCEEEeeCC-CCCCCh--hhccCCCCCEEECcCC-CCCC--ChhhccCC
Confidence 3468899999987653 2211 1457889999999986 343322 2678999999999986 4443 33677889
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCC
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 342 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 342 (488)
+|+.|+|++|.+... ..+. .+++|+.|++++|. ++.. ..+ . .+++|+.|+|++| .++.... ...++
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~-l~~l--~~l-~--~l~~L~~L~Ls~N-~l~~~~~---l~~l~ 175 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLV--HLPQLESLYLGNNK-ITDI--TVL-S--RLTKLDTLSLEDN-QISDIVP---LAGLT 175 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGG--GCTTCSEEECCSSC-CCCC--GGG-G--SCTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred CCCEEEecCCCCCCC--cccc--CCCccCEEECCCCc-cCCc--hhh-c--ccCCCCEEECcCC-cCCCchh---hccCC
Confidence 999999999877753 2233 38889999998864 4432 112 1 2378888888885 5553221 33688
Q ss_pred CCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 343 PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+|+.|+|++| .+++. ..+. .+++|+.|++++|+
T Consensus 176 ~L~~L~Ls~N-~i~~l--~~l~---------~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKN-HISDL--RALA---------GLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSS-CCCBC--GGGT---------TCTTCSEEECCSEE
T ss_pred CCCEEECcCC-CCCCC--hHHc---------cCCCCCEEEccCCc
Confidence 8888888888 66653 2222 67888888888886
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-12 Score=113.78 Aligned_cols=201 Identities=15% Similarity=0.053 Sum_probs=96.8
Q ss_pred CCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCC
Q 011317 93 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 172 (488)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 172 (488)
++|++|++++|. ++......+..+++|++|+++++.. ...+.... +..+++|++|++++|+.
T Consensus 31 ~~l~~L~l~~n~---------l~~i~~~~~~~l~~L~~L~l~~n~~-----l~~i~~~~----f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 31 PSTQTLKLIETH---------LRTIPSHAFSNLPNISRIYVSIDVT-----LQQLESHS----FYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTCCEEEEESCC---------CSEECTTTTTTCTTCCEEEEECCSS-----CCEECTTT----EESCTTCCEEEEEEETT
T ss_pred CcccEEEEeCCc---------ceEECHHHccCCCCCcEEeCCCCCC-----cceeCHhH----cCCCcCCcEEECCCCCC
Confidence 478889998874 4443333466777888888865421 11122111 13466777777776434
Q ss_pred CCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcC---EEeccCCCC
Q 011317 173 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK---VLDLRDCKN 249 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~ 249 (488)
+.... ...+..+++|++|+++++.. .. +. .+..+++|+ .|+++++..
T Consensus 93 l~~i~-~~~f~~l~~L~~L~l~~n~l-~~--lp--------------------------~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 93 LTYID-PDALKELPLLKFLGIFNTGL-KM--FP--------------------------DLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp CCEEC-TTSEECCTTCCEEEEEEECC-CS--CC--------------------------CCTTCCBCCSEEEEEEESCTT
T ss_pred eeEcC-HHHhCCCCCCCEEeCCCCCC-cc--cc--------------------------ccccccccccccEEECCCCcc
Confidence 44321 11123456666666665431 11 00 022334444 555555423
Q ss_pred CChHHHHhhcCCCCcc-EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC-CCeeEEecCCCC
Q 011317 250 LGDEALRAISSLPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK-LQLQELDLSNLP 327 (488)
Q Consensus 250 ~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~~~ 327 (488)
+.......+..+++|+ .|++++|.++..... ... .++|+.|+++++..++......+. .+ ++|++|++++ +
T Consensus 143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~-~~~--~~~L~~L~L~~n~~l~~i~~~~~~---~l~~~L~~L~l~~-N 215 (239)
T 2xwt_C 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY-AFN--GTKLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQ-T 215 (239)
T ss_dssp CCEECTTTTTTTBSSEEEEECCSCCCCEECTT-TTT--TCEEEEEECTTCTTCCEECTTTTT---TCSBCCSEEECTT-C
T ss_pred hhhcCcccccchhcceeEEEcCCCCCcccCHh-hcC--CCCCCEEEcCCCCCcccCCHHHhh---ccccCCcEEECCC-C
Confidence 4433333445556666 666666554422211 111 245666666665323311111111 12 4666666666 3
Q ss_pred CCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 328 HLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 328 ~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
.++..... .+++|+.|.++++
T Consensus 216 ~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 216 SVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCT----TCTTCSEEECTTC
T ss_pred ccccCChh----HhccCceeeccCc
Confidence 44421111 3566777777665
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-11 Score=112.61 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=100.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
++++++++++++.+..-. . ...+++++|++++|. ++......+..+++|++|+++++. ...
T Consensus 9 l~~l~~l~~~~~~l~~ip-~---~~~~~l~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 69 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALP-P---DLPKDTTILHLSENL---------LYTFSLATLMPYTRLTQLNLDRAE------LTK 69 (290)
T ss_dssp STTCCEEECTTSCCSSCC-S---CCCTTCCEEECTTSC---------CSEEEGGGGTTCTTCCEEECTTSC------CCE
T ss_pred cCCccEEECCCCCCCcCC-C---CCCCCCCEEEcCCCc---------CCccCHHHhhcCCCCCEEECCCCc------cCc
Confidence 567777777765554311 0 124678888888774 444334456677777777776432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ..+++|+.|+++++ .+.. ++..+..+++|++|+++++. +.
T Consensus 70 ~~~~------~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~---------------------------l~ 113 (290)
T 1p9a_G 70 LQVD------GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR---------------------------LT 113 (290)
T ss_dssp EECC------SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC---------------------------CC
T ss_pred ccCC------CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCc---------------------------Cc
Confidence 1111 23566666666663 3331 11112234444444444432 22
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DK 304 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~ 304 (488)
......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++......+. .+++|+.|+++++. ++ +.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~-l~~ip~ 189 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENS-LYTIPK 189 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred ccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhc--CcCCCCEEECCCCc-CCccCh
Confidence 111122345666666666664 34443334455666777777777665533222222 26677777777643 33 11
Q ss_pred HHHHHhccCCCCCeeEEecCCCC
Q 011317 305 CISALFDGTSKLQLQELDLSNLP 327 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~~L~l~~~~ 327 (488)
++. ..++|+.|++++.+
T Consensus 190 ~~~------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFF------GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT------TTCCCSEEECCSCC
T ss_pred hhc------ccccCCeEEeCCCC
Confidence 111 11578888888743
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-11 Score=113.53 Aligned_cols=197 Identities=17% Similarity=0.103 Sum_probs=131.5
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCC
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 262 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 262 (488)
..+++++.++++++. ++..+ ....++++.|+++++ .+.......+..+++|+.|+++++ .++... ....++
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALP----PDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ--VDGTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEE--CCSCCT
T ss_pred cccCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCccc--CCCCCC
Confidence 346789999998754 32211 112368999999985 555444445678999999999985 454432 236889
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+|++|++++|.+..... .+ . .+++|+.|+++++. ++. ..+.. +++|++|+++++ .++...... ..
T Consensus 78 ~L~~L~Ls~N~l~~l~~-~~-~-~l~~L~~L~l~~N~-l~~l~~~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~ 145 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL-LG-Q-TLPALTVLDVSFNR-LTSLPLGALRG------LGELQELYLKGN-ELKTLPPGL-LT 145 (290)
T ss_dssp TCCEEECCSSCCSSCCC-CT-T-TCTTCCEEECCSSC-CCCCCSSTTTT------CTTCCEEECTTS-CCCCCCTTT-TT
T ss_pred cCCEEECCCCcCCcCch-hh-c-cCCCCCEEECCCCc-CcccCHHHHcC------CCCCCEEECCCC-CCCccChhh-cc
Confidence 99999999997763221 12 2 48899999999864 442 22222 289999999994 565222111 22
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++| .++......+ . .+++|+.|++++|. ++.... .+. ..++|+.|.+++|+
T Consensus 146 ~l~~L~~L~L~~N-~l~~l~~~~~-~--------~l~~L~~L~L~~N~-l~~ip~-~~~--~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLANN-NLTELPAGLL-N--------GLENLDTLLLQENS-LYTIPK-GFF--GSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTTS-CCSCCCTTTT-T--------TCTTCCEEECCSSC-CCCCCT-TTT--TTCCCSEEECCSCC
T ss_pred cccCCCEEECCCC-cCCccCHHHh-c--------CcCCCCEEECCCCc-CCccCh-hhc--ccccCCeEEeCCCC
Confidence 5889999999999 5552211111 1 68899999999998 663221 222 36789999999886
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=106.66 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 316 LQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
++|++|+|+. +.+++.+...+.. .+++|+.|++++| .+++.++..+..
T Consensus 279 ~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~ 329 (362)
T 2ra8_A 279 PQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQK 329 (362)
T ss_dssp GGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHH
T ss_pred CCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHH
Confidence 4555555554 3555555444432 2455666666555 455555555554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-11 Score=107.91 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|++|++++|. ++.....
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~ 173 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGV-FDRLTKLKELRLNTN-QLQSIPAGAFD---------KLTNLQTLSLSTNQ-LQSVPHG 173 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CSCCCTT
T ss_pred CCCCEEEcCCC-cCCCcChhH-hccCCcccEEECcCC-cCCccCHHHcC---------cCcCCCEEECCCCc-CCccCHH
Confidence 56666666652 443111111 114677777777777 44422111111 56777777777776 5543333
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.+. .+++|+.|++++|+
T Consensus 174 ~~~--~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFD--RLGKLQTITLFGNQ 190 (251)
T ss_dssp TTT--TCTTCCEEECCSCC
T ss_pred HHh--CCCCCCEEEeeCCc
Confidence 333 36778888887765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=6e-09 Score=88.70 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHH
Q 011317 287 ITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 287 ~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
.++|++|++++|..+++.+...++.. ...++|++|+|++ +.+++.+...++. ..++|++|++++| .+++.+...
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 44455555544423444444333221 0114566666665 3555555444332 2355666666666 566666666
Q ss_pred HHcccccCCCCCCCCccEEec--cCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDL--YNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l--~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
++.++. .+++|++|++ ++|. +++.+...+.. ...++|++|++++|.
T Consensus 113 l~~~L~-----~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQ-----SNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGG-----GCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHH-----hCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 555444 4556666666 4454 66655443332 124566666666654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-10 Score=116.65 Aligned_cols=167 Identities=23% Similarity=0.264 Sum_probs=120.1
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|+.|+++++ .+... +. +..+++|+.|+|+++......+ ...+++|+.|+++++ .+.. +..+..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKD--LSSLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC--TT-GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCC--CTTSTTCT
T ss_pred cCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCC--ChhhccCC
Confidence 4678999999985 45432 12 3678999999999876322111 567899999999996 4443 22567899
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
+|+.|+++++ .+.. +..+..+++|+.|+|++|.+... ..+. .+++|+.|++++|. ++.... + . .+++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~-l~~~~~--l-~--~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--INGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQ-ISDIVP--L-A--GLTK 176 (605)
T ss_dssp TCCEEECTTS-CCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSC-CCCCGG--G-T--TCTT
T ss_pred CCCEEEecCC-CCCC--CccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCc-CCCchh--h-c--cCCC
Confidence 9999999986 4443 34577899999999999988764 2333 48999999999975 442111 2 2 2389
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 318 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 318 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
|+.|+|++| .+++. ..+ ..+++|+.|++++|
T Consensus 177 L~~L~Ls~N-~i~~l--~~l-~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RAL-AGLKNLDVLELFSQ 207 (605)
T ss_dssp CCEEECCSS-CCCBC--GGG-TTCTTCSEEECCSE
T ss_pred CCEEECcCC-CCCCC--hHH-ccCCCCCEEEccCC
Confidence 999999995 66642 222 36899999999998
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-09 Score=89.46 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=70.6
Q ss_pred cCCCCccEEEeCCC-ccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHhccC-CCCCeeEEecCCCCCCCHHHH
Q 011317 259 SSLPQLKILLLDGS-DISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGI 334 (488)
Q Consensus 259 ~~~~~L~~L~l~~~-~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~ 334 (488)
...++|++|+|++| .+.+.+...+.. ...++|++|++++| .+++++...++..- ..++|++|+|++ +.+++.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHH
Confidence 34555555555555 555554443332 12455666666554 25555443332210 015677777776 46676666
Q ss_pred HHHHh---cCCCCCeEee--cCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 335 LTLAT---CRVPISELRV--RQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 335 ~~l~~---~~~~L~~L~l--~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
..++. ..++|+.|++ ++| .+++.+...++.++. .+++|++|++++|. +++.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~-----~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE-----KNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH-----HCSSCCEEECCCSS-HHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH-----hCCCcCEEeccCCC-CChHH
Confidence 55543 3456777777 556 677777666665444 56677777777776 55543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.5e-11 Score=105.55 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=72.8
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
+..+++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+
T Consensus 55 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~~~~~--- 127 (251)
T 3m19_A 55 FRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--LTQLDKLYLGGNQ-LKSLPSGVF--- 127 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---
T ss_pred hcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcc--cCCCCEEEcCCCc-CCCcChhHh---
Confidence 345566666666653 344433344556666666666666555333222222 5666666666642 331100001
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
..+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 128 DRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTN-QLQSVPHGAFD---------RLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSCC
T ss_pred ccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCC-cCCccCHHHHh---------CCCCCCEEEeeCCc
Confidence 11267777777773 5542211111 25778888888888 55432221221 67788888888887
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.5e-10 Score=99.53 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
++|+.|+++++ .+.... .+..+++|+.|+++++ .+..... +..+++|+.|++++|.++
T Consensus 41 ~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp TTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred CcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccC
Confidence 45555555553 222211 2344555555555553 2332221 445555555555555443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.5e-10 Score=91.23 Aligned_cols=82 Identities=28% Similarity=0.368 Sum_probs=37.2
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH-
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF- 394 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~- 394 (488)
++|++|+++++ .++.. +......+++|+.|++++| .+++........ .+++|++|++++|. ++....
T Consensus 64 ~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~--------~l~~L~~L~l~~N~-l~~~~~~ 131 (149)
T 2je0_A 64 NKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK--------KLENLKSLDLFNCE-VTNLNDY 131 (149)
T ss_dssp TTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGG--------GCTTCCEEECTTCG-GGGSTTH
T ss_pred CCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHh--------hCCCCCEEeCcCCc-ccchHHH
Confidence 45555555552 33321 1112223556666666665 444432211111 45566666666664 443221
Q ss_pred --HHhhccCCCCccEEEec
Q 011317 395 --RWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 395 --~~l~~~~~~~L~~L~l~ 411 (488)
..+.. +++|+.|+++
T Consensus 132 ~~~~~~~--l~~L~~L~l~ 148 (149)
T 2je0_A 132 RENVFKL--LPQLTYLDGY 148 (149)
T ss_dssp HHHHHHH--CTTCCEETTB
T ss_pred HHHHHHH--CCCcccccCC
Confidence 22332 5666666553
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-10 Score=109.34 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=109.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+|+.+.+..-....+ ..+++|++|+|++|... +......+..+++|+++.+..+.. ...
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~--------~~i~~~~f~~L~~l~~~l~~~~N~-----l~~ 94 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVL--------EVIEADVFSNLPKLHEIRIEKANN-----LLY 94 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTC--------CEECTTSBCSCTTCCEEEEEEETT-----CCE
T ss_pred CCCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCC--------CccChhHhhcchhhhhhhcccCCc-----ccc
Confidence 4688999999887764222222 36889999999988521 111122355677777655433211 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... .+..+++|+.|+++++ .+....... .....++..|++.++..+.......+......++.|+++++ .+.
T Consensus 95 l~~~----~f~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~ 167 (350)
T 4ay9_X 95 INPE----AFQNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ 167 (350)
T ss_dssp ECTT----SBCCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred cCch----hhhhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-ccc
Confidence 2111 1245788888888873 443221101 11234566677765443332211112222345677777763 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR 300 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~ 300 (488)
..... .....+|+.|.+.+++.++......+..+++|+.|++++|.++.... ..+.+|++|.+.++.+
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARSTYN 235 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTCTT
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccCCC
Confidence 21111 11345677777766555655555556667777777777776653221 1345566666655543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-09 Score=87.53 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
++|+.|+++++ .+.+..++..+..+++|+.|+++++. +... .....+++|++|+++++ .+.......+..+++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 44555555553 33311112222345566666665543 2211 12234556666666663 3322111223346677
Q ss_pred CEEeccCCCCCChH-HHHhhcCCCCccEEEeCCCccchhHH---HHHHhhcCCCccEEecC
Q 011317 240 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLR 296 (488)
Q Consensus 240 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~ 296 (488)
++|+++++ .++.. ....+..+++|++|++++|.++.... ..+.. +++|+.|+++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL--LPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH--CTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH--CCCcccccCC
Confidence 77777764 34443 23556667777777777776654432 22333 6667766654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-09 Score=95.61 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=15.6
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDC 247 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 247 (488)
.+++|++|+++++ .+..... +..+++|+.|+++++
T Consensus 61 ~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 61 FFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp GCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS
T ss_pred hCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC
Confidence 3445555555543 2222111 444555555555553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-09 Score=100.98 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
..+++.+.+.+ .+.......+. .|++|+.++++++ .+...+..++..|++|+.|.+..+ +...+-..+. +|++
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~ 274 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGR 274 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTT
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhh--CChh
Confidence 34666666665 24444444444 4899999999874 566666777888999999999886 4333333333 4888
Q ss_pred cc-EEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEee
Q 011317 290 LV-KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRV 349 (488)
Q Consensus 290 L~-~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 349 (488)
|+ .+.+.+ .++.-+-.. +.+| ++|++|++.+ +.++.-+-.++. .|++|+.+..
T Consensus 275 L~~~l~l~~--~l~~I~~~a-F~~c--~~L~~l~l~~-n~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIEFGA-FMGC--DNLRYVLATG-DKITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp CCEEEEECT--TCCEECTTT-TTTC--TTEEEEEECS-SCCCEECTTTTC-TTCCCCEEEC
T ss_pred ccEEEEEcc--cceEEchhh-hhCC--ccCCEEEeCC-CccCccchhhhc-CCcchhhhcc
Confidence 98 999976 343211111 2233 8899999966 455532222222 6889988753
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-09 Score=99.13 Aligned_cols=225 Identities=15% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCCCcEEEeec--CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
+++|++|.|.. ..+++..+ ..|++|+.|++..+. ++..+-..|..|.++..+.+....... ..
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF----~~~~~L~~l~l~~n~---------i~~i~~~aF~~~~~l~~l~~~~~~~~~--~~ 164 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAF----KGCDNLKICQIRKKT---------APNLLPEALADSVTAIFIPLGSSDAYR--FK 164 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTT----TTCTTCCEEEBCCSS---------CCEECTTSSCTTTCEEEECTTCTHHHH--TS
T ss_pred cCCCcEEECCccccchhHHHh----hcCcccceEEcCCCC---------ccccchhhhcCCCceEEecCcchhhhh--cc
Confidence 56666666664 22333222 356677777776653 222222334456666666553200000 00
Q ss_pred cccChHHHHHHHHhCCCCC-EEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 145 RRVNDLGILLMADKCASME-SICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
..+.+.. +..|.+|+ .+.+.....+... +........+++.+.+.+. +....+..+...|++|+.++++++
T Consensus 165 ~~i~~~~----f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n- 236 (329)
T 3sb4_A 165 NRWEHFA----FIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT- 236 (329)
T ss_dssp TTTTTSC----EEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-
T ss_pred ccccccc----cccccccceeEEecCCCcHHHH-HhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-
Confidence 0000000 12355566 4555543322221 1111112456777777653 555666666667889999999873
Q ss_pred CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc-EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC
Q 011317 224 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 302 (488)
Q Consensus 224 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 302 (488)
.+...+..++..|++|+.|++.+. +...+..++..|++|+ .+.+.. .++..+-..+. +|++|+.|++.+. .++
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~n-~i~ 310 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATGD-KIT 310 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECSS-CCC
T ss_pred CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhh--CCccCCEEEeCCC-ccC
Confidence 444444445668899999999873 6666667788899998 999987 44333333333 4889999998653 343
Q ss_pred HHHHHHHhccCCCCCeeEEec
Q 011317 303 DKCISALFDGTSKLQLQELDL 323 (488)
Q Consensus 303 ~~~~~~l~~~~~~~~L~~L~l 323 (488)
.-+-..+ .+| ++|++++.
T Consensus 311 ~I~~~aF-~~~--~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELF-GNG--VPSKLIYK 328 (329)
T ss_dssp EECTTTT-CTT--CCCCEEEC
T ss_pred ccchhhh-cCC--cchhhhcc
Confidence 2111112 223 78888764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-09 Score=89.55 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
++|+.|+++++ .+.+..++..+..+++|+.|+++++. +... .....+++|++|+++++ .+.......+..+++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence 44555555553 23211112222344555555555543 2211 12234556666666654 2222111122346777
Q ss_pred CEEeccCCCCCChH-HHHhhcCCCCccEEEeCCCccchhHH---HHHHhhcCCCccEEecCCCC
Q 011317 240 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLRGCK 299 (488)
Q Consensus 240 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~~~~ 299 (488)
+.|+++++ .+... .+..+..+++|+.|++++|.++.... ..+. .+++|+.|++++|.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCCC
Confidence 77777775 44443 33556677777777777776654432 2222 36777777776653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-10 Score=112.53 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCC
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 103 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 103 (488)
+++|+.|+|+.+.+. .....+ ..+++|+.|+++++
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n 382 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENK 382 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCH
T ss_pred CccceeccCChhhHH-hhHHHH-HHHHHHHHhccccc
Confidence 566777777766554 223333 35677777777554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-09 Score=101.85 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 290 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 290 (488)
+.++.|+++++ .+.......+. .+++|+.|+++++ .+.......+..+++|++|+|++|.+.......+.. +++|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD--LQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--CcCC
Confidence 35777777773 44433332333 6677777777764 455544455667777777777777665433222222 6677
Q ss_pred cEEecCCCCCCCH---HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHH--HhcCCCCCeEeecCCCCCCH
Q 011317 291 VKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLPHLSDNGILTL--ATCRVPISELRVRQCPLIGD 357 (488)
Q Consensus 291 ~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~l~~ 357 (488)
+.|+++++. ++. ..+.. +++|++|+|++ +.++......+ ...+++|+.|++++| .++.
T Consensus 115 ~~L~L~~N~-i~~~~~~~~~~------l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 177 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRNAFED------MAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKK 177 (361)
T ss_dssp CEEECCSSC-CCEECTTTTTT------CTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred CEEECCCCc-ccEECHHHhCC------cccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence 777776643 331 11111 25666666666 34432111100 013556666666665 4443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=85.04 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=5.8
Q ss_pred CCCCccEEEeCCCc
Q 011317 260 SLPQLKILLLDGSD 273 (488)
Q Consensus 260 ~~~~L~~L~l~~~~ 273 (488)
.+++|+.|++++|.
T Consensus 47 ~l~~L~~L~l~~n~ 60 (168)
T 2ell_A 47 EFVNLEFLSLINVG 60 (168)
T ss_dssp GGGGCCEEEEESSC
T ss_pred hCCCCCEEeCcCCC
Confidence 33444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-09 Score=93.56 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|++|+++++ .+.......+..+++|++|++++|.++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 50 ELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3444444444442 232222222334444444444444433
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-10 Score=107.79 Aligned_cols=227 Identities=15% Similarity=0.054 Sum_probs=137.6
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
.+++++|+|++ +.++.. ....+..+++|++|+++++......+. ..+..+++++++.+.+++.+.......+..+++
T Consensus 29 ~~~l~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVL-TKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEES-CCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCCEEEccC-CcCCCc-CHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 35799999998 566643 222346789999999998764321111 123456777776665545555433334568899
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
|++|+++++ .+.......+....++..|++.++ .+.......+.. ....++.|+++++. ++.-.-..+ ...+
T Consensus 106 L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~N~-i~~i~~~~f----~~~~ 178 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNKNG-IQEIHNSAF----NGTQ 178 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCSSC-CCEECTTSS----TTEE
T ss_pred ccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh-cchhhhhhcccccc-ccCCChhhc----cccc
Confidence 999999985 444333223335566778888664 444322222222 23468889998853 542111111 1267
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 318 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 318 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
|++|.+.+++.++.-...++ ..+++|+.|++++| .++. +... .+.+|+.|.+.++.+++.. ..+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~-----lp~~-------~~~~L~~L~~l~~~~l~~l--P~l 242 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVF-HGASGPVILDISRT-RIHS-----LPSY-------GLENLKKLRARSTYNLKKL--PTL 242 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTS-CCCC-----CCSS-------SCTTCCEEECTTCTTCCCC--CCT
T ss_pred hhHHhhccCCcccCCCHHHh-ccCcccchhhcCCC-CcCc-----cChh-------hhccchHhhhccCCCcCcC--CCc
Confidence 99999987666653221111 26889999999999 5552 2111 4677888888877765542 233
Q ss_pred hccCCCCccEEEecCC
Q 011317 398 KKPYFPRLRWLGVTGS 413 (488)
Q Consensus 398 ~~~~~~~L~~L~l~~~ 413 (488)
. .+++|+.+++.+.
T Consensus 243 ~--~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 E--KLVALMEASLTYP 256 (350)
T ss_dssp T--TCCSCCEEECSCH
T ss_pred h--hCcChhhCcCCCC
Confidence 3 3889999998653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-09 Score=100.62 Aligned_cols=167 Identities=23% Similarity=0.196 Sum_probs=109.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc
Q 011317 186 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265 (488)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 265 (488)
+.++.|+++++. ++......+...+++|+.|+++++ .+.......+..+++|++|+++++ .+.......+..+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 468999999865 332221111126789999999984 555443345668999999999995 56665556678899999
Q ss_pred EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCC--
Q 011317 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP-- 343 (488)
Q Consensus 266 ~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-- 343 (488)
.|+|++|.+.......+.. +++|+.|+++++. ++......+.....+++|+.|+|++ +.++......+. .++.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~-~l~~~~ 190 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFED--MAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQ-KLPAWV 190 (361)
T ss_dssp EEECCSSCCCEECTTTTTT--CTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHH-HSCHHH
T ss_pred EEECCCCcccEECHHHhCC--cccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhh-hccHhh
Confidence 9999999887654444444 8999999999864 4421111110001238999999998 566643333333 3565
Q ss_pred CCeEeecCCCCCCHHHH
Q 011317 344 ISELRVRQCPLIGDTSV 360 (488)
Q Consensus 344 L~~L~l~~~~~l~~~~~ 360 (488)
|+.|++.+|+-.-+-.+
T Consensus 191 l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 191 KNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HTTEECCSSCEECCHHH
T ss_pred cceEEecCCCccCCcCc
Confidence 48899999864444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.4e-09 Score=90.95 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+.. +++|+.|++++|+
T Consensus 126 ~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNK-LQTIAKGTFSP--LRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTT--CTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CCEECHHHHhC--CCCCCEEEeCCCC
Confidence 45556666666655 44332222332 5666666666654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-08 Score=88.35 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=20.5
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+. .+++|+.|++.+|+
T Consensus 133 ~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQ-LKSIPHGAFD--RLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSC-CCCCCTTTTT--TCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCc-CCccCHHHHh--CCCCCCEEEeeCCC
Confidence 45666666666665 4432222232 25666666666654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-08 Score=89.18 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=29.9
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
++|++|++++ +.++......+. .+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 104 ~~L~~L~L~~-N~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNA-NKINCLRVDAFQ-DLHNLNLLSLYDN-KLQTIAKGTFS---------PLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC
T ss_pred CCCCEEECCC-CCCCEeCHHHcC-CCCCCCEEECCCC-cCCEECHHHHh---------CCCCCCEEEeCCCC
Confidence 4555555555 233321111111 4566777777766 44322211111 56677777777776
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-08 Score=88.84 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=20.8
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 133 ~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQN-QLKSIPHGAFD---------RLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-cCCccCHHHHh---------CCCCCCEEEeeCCC
Confidence 4666667776666 44421111111 56667777777766
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-08 Score=87.52 Aligned_cols=133 Identities=20% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
.++|++|+++++ .+.......+..+++|++|++++|.++......+. .+++|++|+++++. ++......+ ..+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~---~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLSTNQ-LQSLPNGVF---DKL 99 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTT---TTC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcC--CCCCcCEEECCCCc-CCccCHhHh---cCc
Confidence 457788888774 45544444566778888888888766643322222 36777777777753 331100000 112
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|++|++++|+
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQN-QLKSVPDGVFD---------RLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSCC
T ss_pred cCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCC-ccceeCHHHhc---------cCCCccEEEecCCC
Confidence 66777777663 444211111 124566777777666 44321111111 45666777776664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=73.95 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=78.4
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHH
Q 011317 286 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVI 361 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 361 (488)
.-+.|++|++++++.+++++...++.. .....|++|+|++ +.+.+.+..+++. .-+.|+.|+|++| .+++.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 356677777766445666665554432 1115788888887 4777777655543 3367888888888 78888888
Q ss_pred HHHcccccCCCCCCCCccEEeccCCC--CCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 362 ALASMLVDDDRWYGSSIRLLDLYNCG--GITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 362 ~l~~~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
.++.++. ..+.|++|+++++. .+.+.+...+.. ..-++|+.|+++.+.
T Consensus 117 ala~aL~-----~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTL-----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTT-----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHh-----hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 8877766 56678888887653 366655433322 025678888887654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-08 Score=99.00 Aligned_cols=20 Identities=5% Similarity=-0.199 Sum_probs=10.3
Q ss_pred CCCCccEEeccCCCCCCHHHH
Q 011317 374 YGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~ 394 (488)
.+++|+.|++++|+ ++....
T Consensus 228 ~l~~L~~L~L~~N~-l~~~~p 247 (571)
T 3cvr_A 228 SLDPTCTIILEDNP-LSSRIR 247 (571)
T ss_dssp GSCTTEEEECCSSS-CCHHHH
T ss_pred cCCCCCEEEeeCCc-CCCcCH
Confidence 34555555555555 554333
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-08 Score=82.47 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHH-HHhhcCCCCccEEEeCCCccchhHHH---HHHhh
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVS---YLRLT 285 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~---~l~~~ 285 (488)
.+++|+.|+++++ .+...+...+..+++|+.|+++++ .+.... +..+..+++|+.|++++|.+...... .+..
T Consensus 62 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~- 138 (176)
T 1a9n_A 62 LLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK- 138 (176)
T ss_dssp CCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH-
T ss_pred cCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH-
Confidence 3445555555553 232211111245667777777764 343322 23556677777777777765432211 2333
Q ss_pred cCCCccEEecCCC
Q 011317 286 VITSLVKLSLRGC 298 (488)
Q Consensus 286 ~~~~L~~L~l~~~ 298 (488)
+++|+.|+++++
T Consensus 139 -l~~L~~Ld~~~n 150 (176)
T 1a9n_A 139 -VPQVRVLDFQKV 150 (176)
T ss_dssp -CTTCSEETTEEC
T ss_pred -CCccceeCCCcC
Confidence 677777776654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-08 Score=87.76 Aligned_cols=62 Identities=24% Similarity=0.176 Sum_probs=33.4
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++| .++......+. .+++|++|++++|. ++......+.. +++|+.|++++|+
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFI---------GLSSVRLLSLYDNQ-ITTVAPGAFDT--LHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSST---------TCTTCSEEECTTSC-CCCBCTTTTTT--CTTCCEEECCSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhHcC---------CCccCCEEECCCCc-CCEECHHHhcC--CCCCCEEEecCcC
Confidence 4566666666666 33321111111 45667777777665 55433333433 6677777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-08 Score=88.87 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.0
Q ss_pred CCCCCEEEEcC
Q 011317 159 CASMESICLGG 169 (488)
Q Consensus 159 ~~~L~~L~l~~ 169 (488)
+++|+.|++++
T Consensus 56 l~~L~~L~L~~ 66 (220)
T 2v70_A 56 LPQLRKINFSN 66 (220)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEECCC
Confidence 44444444444
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.2e-09 Score=89.07 Aligned_cols=105 Identities=21% Similarity=0.106 Sum_probs=50.5
Q ss_pred hcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHH
Q 011317 258 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLSDNGIL 335 (488)
Q Consensus 258 l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~ 335 (488)
+..+++|++|++++|.+.... .+.. +++|+.|++++|. ++ +..+..+ ++|++|+++++ .++.. .
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~--l~~L~~L~l~~n~-l~~l~~~~~~~------~~L~~L~L~~N-~l~~l--~ 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSG--MENLRILSLGRNL-IKKIENLDAVA------DTLEELWISYN-QIASL--S 109 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHH--HTTCCEEEEEEEE-ECSCSSHHHHH------HHCSEEEEEEE-ECCCH--H
T ss_pred HhcCCCCCEEECCCCCCcccc--cccc--CCCCCEEECCCCC-cccccchhhcC------CcCCEEECcCC-cCCcC--C
Confidence 445556666666655444322 2222 5556666665542 22 1112222 45666666653 44321 1
Q ss_pred HHHhcCCCCCeEeecCCCCCCHHHH-HHHHcccccCCCCCCCCccEEeccCCC
Q 011317 336 TLATCRVPISELRVRQCPLIGDTSV-IALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 336 ~l~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.+. .+++|+.|++++| .+++... ..+. .+++|++|++++|+
T Consensus 110 ~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~---------~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 GIE-KLVNLRVLYMSNN-KITNWGEIDKLA---------ALDKLEDLLLAGNP 151 (198)
T ss_dssp HHH-HHHHSSEEEESEE-ECCCHHHHHHHT---------TTTTCSEEEECSCH
T ss_pred ccc-cCCCCCEEECCCC-cCCchhHHHHHh---------cCCCCCEEEecCCc
Confidence 222 3556666666666 4444322 2222 45666666666665
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-07 Score=92.15 Aligned_cols=167 Identities=21% Similarity=0.175 Sum_probs=93.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|++++|.+.. +. ..+++|++|++++|. ++. ++.+.. +|++|+++++. ...
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~---------l~~--ip~l~~--~L~~L~Ls~N~------l~~ 134 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR---------LST--LPELPA--SLKHLDVDNNQ------LTM 134 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC---------CSC--CCCCCT--TCCEEECCSSC------CSC
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC---------CCC--cchhhc--CCCEEECCCCc------CCC
Confidence 4678888888776663 21 356788888888774 332 111222 78888886542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
++. .+++|+.|+++++ .++.. +. .+++|+.|++++|.. +..+ .+ .++|+.|+++++ .+.
T Consensus 135 lp~--------~l~~L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N~L-~~lp--~l---~~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 135 LPE--------LPALLEYINADNN-QLTML--PE---LPTSLEVLSVRNNQL-TFLP--EL---PESLEALDVSTN-LLE 193 (571)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSCC--CC---CCTTCCEEECCSSCC-SCCC--CC---CTTCCEEECCSS-CCS
T ss_pred CCC--------cCccccEEeCCCC-ccCcC--CC---cCCCcCEEECCCCCC-CCcc--hh---hCCCCEEECcCC-CCC
Confidence 322 3677888888773 44431 11 466788888877642 2211 11 167888888774 443
Q ss_pred HHHHHHhhC-----CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHH
Q 011317 227 NHAIKSLAS-----NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYL 282 (488)
Q Consensus 227 ~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l 282 (488)
..+. +.. .+.|+.|+++++ .++... ..+..+++|+.|+|++|.++......+
T Consensus 194 ~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 194 SLPA--VPVRNHHSEETEIFFRCREN-RITHIP-ENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCC--CC--------CCEEEECCSS-CCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred chhh--HHHhhhcccccceEEecCCC-cceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 2111 111 122277777774 444322 234457777888887777766554444
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-07 Score=78.64 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=27.1
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
+|+.|+++++ .+... ..+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N 98 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA--LPDLTELILTNN 98 (176)
T ss_dssp CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH--CTTCCEEECCSC
T ss_pred CCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCcchhhc--CCCCCEEECCCC
Confidence 5666666553 33332 34445556666666665554322111222 555555555553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-09 Score=107.71 Aligned_cols=102 Identities=25% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcc
Q 011317 288 TSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 366 (488)
Q Consensus 288 ~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 366 (488)
..|+.|+++++. ++. ..+.. +++|+.|+++++ .++.- ...+ ..+++|+.|++++| .++. +..+.
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~~~~------l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N-~l~~--lp~l~-- 505 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCHLEQ------LLLVTHLDLSHN-RLRAL-PPAL-AALRCLEVLQASDN-ALEN--VDGVA-- 505 (567)
T ss_dssp TTCSEEECTTSC-CSSCCCGGG------GTTCCEEECCSS-CCCCC-CGGG-GGCTTCCEEECCSS-CCCC--CGGGT--
T ss_pred cCceEEEecCCC-CCCCcCccc------cccCcEeecCcc-ccccc-chhh-hcCCCCCEEECCCC-CCCC--CcccC--
Confidence 357777777753 332 11222 267777777773 55411 0112 25777888888777 5553 22222
Q ss_pred cccCCCCCCCCccEEeccCCCCCCHHH-HHHhhccCCCCccEEEecCCC
Q 011317 367 LVDDDRWYGSSIRLLDLYNCGGITQLA-FRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++... ...+.. +++|+.|++++|.
T Consensus 506 -------~l~~L~~L~Ls~N~-l~~~~~p~~l~~--l~~L~~L~L~~N~ 544 (567)
T 1dce_A 506 -------NLPRLQELLLCNNR-LQQSAAIQPLVS--CPRLVLLNLQGNS 544 (567)
T ss_dssp -------TCSSCCEEECCSSC-CCSSSTTGGGGG--CTTCCEEECTTSG
T ss_pred -------CCCCCcEEECCCCC-CCCCCCcHHHhc--CCCCCEEEecCCc
Confidence 67778888888776 66543 344443 7788888887775
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-06 Score=70.83 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=83.4
Q ss_pred HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC---CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCcc
Q 011317 303 DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIR 379 (488)
Q Consensus 303 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~ 379 (488)
++.+..+.... +.|++|+|++++.+.+.+...++..+ +.|+.|+|++| .++|.+..+++.++. ..+.|+
T Consensus 30 ~~~l~~ll~~n--~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~-----~N~tL~ 101 (197)
T 1pgv_A 30 ESCINRLREDD--TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIE-----TSPSLR 101 (197)
T ss_dssp HHHHHHHHTTC--SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHH-----HCSSCC
T ss_pred HHHHHHHHhcC--CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHh-----cCCccC
Confidence 34556665554 78999999985689999888776543 67999999999 999999999988877 788999
Q ss_pred EEeccCCCCCCHHHHHHhhcc--CCCCccEEEecCC
Q 011317 380 LLDLYNCGGITQLAFRWLKKP--YFPRLRWLGVTGS 413 (488)
Q Consensus 380 ~L~l~~~~~i~~~~~~~l~~~--~~~~L~~L~l~~~ 413 (488)
+|+|++|. |++.+...+..+ .-..|+.|+++++
T Consensus 102 ~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 102 VLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp EEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred eEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 99999998 999988876652 2458999999865
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-08 Score=95.24 Aligned_cols=259 Identities=13% Similarity=0.207 Sum_probs=122.9
Q ss_pred cCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCC
Q 011317 91 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF 170 (488)
Q Consensus 91 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 170 (488)
.+..++.+.+... ++..+-.+|..| +|+.+.+..+ ...+.+..+ ..+ +|+.+.+..
T Consensus 111 ~~~~l~~i~ip~~----------i~~I~~~aF~~~-~L~~i~l~~~-------i~~I~~~aF----~~~-~L~~i~lp~- 166 (401)
T 4fdw_A 111 ILKGYNEIILPNS----------VKSIPKDAFRNS-QIAKVVLNEG-------LKSIGDMAF----FNS-TVQEIVFPS- 166 (401)
T ss_dssp ECSSCSEEECCTT----------CCEECTTTTTTC-CCSEEECCTT-------CCEECTTTT----TTC-CCCEEECCT-
T ss_pred ecCCccEEEECCc----------cCEehHhhcccC-CccEEEeCCC-------ccEECHHhc----CCC-CceEEEeCC-
Confidence 4566666666653 333333344454 5777777422 233333222 222 577777754
Q ss_pred CCCCHHHHHHHHHhCCCCceEEecCCC--CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCC
Q 011317 171 CRVTDTGFKTILHSCSNLYKLRVSHGT--QLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 248 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 248 (488)
.+...+. ..+..|++|+.+++..+. .+....+ .+.+|+.+.+.. .+...+..++..|++|+.+.+..
T Consensus 167 -~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~-- 235 (401)
T 4fdw_A 167 -TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE-- 235 (401)
T ss_dssp -TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--
T ss_pred -CccEehH-HHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--
Confidence 2222111 113557777777776432 1222221 145777777754 23332333455677777777765
Q ss_pred CCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCC-------CCHHHHHHHhccCCCCCeeEE
Q 011317 249 NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR-------LTDKCISALFDGTSKLQLQEL 321 (488)
Q Consensus 249 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~-------l~~~~~~~l~~~~~~~~L~~L 321 (488)
.+...+..++.+ .+|+.+.+... +...+-..+. +|++|+.+.+.+... +... .+.+| ++|+.+
T Consensus 236 ~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c--~~L~~l 305 (401)
T 4fdw_A 236 NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFY--YCPELAEVTTYGSTFNDDPEAMIHPY----CLEGC--PKLARF 305 (401)
T ss_dssp TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTT--TCTTCCEEEEESSCCCCCTTCEECTT----TTTTC--TTCCEE
T ss_pred CccCcccccccc-CCccEEEeCCC-ccEEChhHhh--CCCCCCEEEeCCccccCCcccEECHH----HhhCC--ccCCeE
Confidence 344444444544 56777777443 2211112222 377777777765321 1111 11223 667777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccC
Q 011317 322 DLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPY 401 (488)
Q Consensus 322 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 401 (488)
.+.+ .++.-+-.++. .|++|+.+.+..+ ++..+-.++. .| +|+.|.+.++. +....-..+..
T Consensus 306 ~l~~--~i~~I~~~aF~-~c~~L~~l~lp~~--l~~I~~~aF~---------~~-~L~~l~l~~n~-~~~l~~~~F~~-- 367 (401)
T 4fdw_A 306 EIPE--SIRILGQGLLG-GNRKVTQLTIPAN--VTQINFSAFN---------NT-GIKEVKVEGTT-PPQVFEKVWYG-- 367 (401)
T ss_dssp CCCT--TCCEECTTTTT-TCCSCCEEEECTT--CCEECTTSSS---------SS-CCCEEEECCSS-CCBCCCSSCCC--
T ss_pred EeCC--ceEEEhhhhhc-CCCCccEEEECcc--ccEEcHHhCC---------CC-CCCEEEEcCCC-CcccccccccC--
Confidence 7764 23321111111 5677777777443 2211111111 55 77777777664 22211112221
Q ss_pred CC-CccEEEecC
Q 011317 402 FP-RLRWLGVTG 412 (488)
Q Consensus 402 ~~-~L~~L~l~~ 412 (488)
++ +++.|.+..
T Consensus 368 ~~~~l~~l~vp~ 379 (401)
T 4fdw_A 368 FPDDITVIRVPA 379 (401)
T ss_dssp SCTTCCEEEECG
T ss_pred CCCCccEEEeCH
Confidence 32 566666654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.8e-08 Score=82.86 Aligned_cols=106 Identities=24% Similarity=0.271 Sum_probs=64.6
Q ss_pred HhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHh
Q 011317 232 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALF 310 (488)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~ 310 (488)
.+..+++|+.|+++++ .+.... .+..+++|+.|++++|.++... ..+. .+++|+.|++++|. ++ -..+..+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~--~~~~L~~L~L~~N~-l~~l~~~~~l- 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDA--VADTLEELWISYNQ-IASLSGIEKL- 114 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHH--HHHHCSEEEEEEEE-CCCHHHHHHH-
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCccccc-chhh--cCCcCCEEECcCCc-CCcCCccccC-
Confidence 3446777777777764 333322 5556777888888777655321 1112 25678888888764 44 2333333
Q ss_pred ccCCCCCeeEEecCCCCCCCHHH-HHHHHhcCCCCCeEeecCC
Q 011317 311 DGTSKLQLQELDLSNLPHLSDNG-ILTLATCRVPISELRVRQC 352 (488)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~~ 352 (488)
++|++|++++ +.++... +..+. .+++|+.|++++|
T Consensus 115 -----~~L~~L~l~~-N~i~~~~~~~~l~-~l~~L~~L~l~~N 150 (198)
T 1ds9_A 115 -----VNLRVLYMSN-NKITNWGEIDKLA-ALDKLEDLLLAGN 150 (198)
T ss_dssp -----HHSSEEEESE-EECCCHHHHHHHT-TTTTCSEEEECSC
T ss_pred -----CCCCEEECCC-CcCCchhHHHHHh-cCCCCCEEEecCC
Confidence 6788888888 4565422 23333 5788888888888
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-06 Score=74.37 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=18.0
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 76 NMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 4444555555442 333333333444455555555554443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-07 Score=90.13 Aligned_cols=284 Identities=12% Similarity=0.152 Sum_probs=134.4
Q ss_pred CCCCcEEEeec--CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccc---
Q 011317 67 LPGIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLI--- 141 (488)
Q Consensus 67 l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--- 141 (488)
+.+|+++.+.. ..+++..+ ..|++|+.++|..+ ++..+-.++..|.+|+.+.+........
T Consensus 70 c~~L~~i~lp~~i~~I~~~aF----~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 70 CRKVTEIKIPSTVREIGEFAF----ENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp CTTEEEEECCTTCCEECTTTT----TTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred CCCceEEEeCCCccCcchhHh----hCCCCCcEEEeCCC----------ceEccchhhcccccchhhcccCceeeeccee
Confidence 67788888763 34444333 36788888888653 2322333455666666655532110000
Q ss_pred ------------ccccccChHHHHHHHHhCCCCCEEEEcCC-CCCCHHHHHHHHHhCCCCceEEecCCC-CCCHHHHHHH
Q 011317 142 ------------TYFRRVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDI 207 (488)
Q Consensus 142 ------------~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 207 (488)
.....+.+. .+..|++|+.+.+... ..+... .+..+++|+.+.+...- .+.+. .
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~----aF~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~~~~~~I~~~----~ 203 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDE----AFATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLPRNLKIIRDY----C 203 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCCTTCCEECTT----T
T ss_pred eecccccccccCccccccchh----hhcccCCCcEEecCCccceeccc----cccCCCCceEEEcCCCceEeCch----h
Confidence 000111111 1234566666666431 111111 12445666666654321 11111 1
Q ss_pred HhcCCCCCEEEecCCCC-CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc--cchhHHHHHHh
Q 011317 208 SATSLSLTHVCLRWCNL-LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRL 284 (488)
Q Consensus 208 ~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--i~~~~~~~l~~ 284 (488)
...|..|+.+.+..... +.+ ....+.+|+.+.+.. .+...+..++..++.|+.+.+..+. +....+ .
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~----~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F---~- 273 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGD----FALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLF---Y- 273 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECT----TTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTT---T-
T ss_pred hccccccceeecCCCceEeeh----hhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeecccc---c-
Confidence 22445555555443211 111 011345666666654 2333333445566777777776542 222111 1
Q ss_pred hcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCC-CCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHH
Q 011317 285 TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 285 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 363 (488)
.++.++.+..... .+.... +..| .+|+.+.+... ..+.+..+. .|.+|+.+.+... ++..+-.++
T Consensus 274 -~~~~l~~~~~~~~-~i~~~~----F~~~--~~L~~i~l~~~i~~I~~~aF~----~c~~L~~i~lp~~--v~~I~~~aF 339 (394)
T 4fs7_A 274 -NCSGLKKVIYGSV-IVPEKT----FYGC--SSLTEVKLLDSVKFIGEEAFE----SCTSLVSIDLPYL--VEEIGKRSF 339 (394)
T ss_dssp -TCTTCCEEEECSS-EECTTT----TTTC--TTCCEEEECTTCCEECTTTTT----TCTTCCEECCCTT--CCEECTTTT
T ss_pred -cccccceeccCce-eecccc----cccc--ccccccccccccceechhhhc----CCCCCCEEEeCCc--ccEEhHHhc
Confidence 3566666655432 122211 1223 67888777541 112222222 5788888888543 221111111
Q ss_pred HcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 364 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 364 ~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
. .|.+|+.+.+..+ ++..+-..+.. |++|+.+.+...
T Consensus 340 ~---------~c~~L~~i~lp~~--l~~I~~~aF~~--C~~L~~i~lp~~ 376 (394)
T 4fs7_A 340 R---------GCTSLSNINFPLS--LRKIGANAFQG--CINLKKVELPKR 376 (394)
T ss_dssp T---------TCTTCCEECCCTT--CCEECTTTBTT--CTTCCEEEEEGG
T ss_pred c---------CCCCCCEEEECcc--ccEehHHHhhC--CCCCCEEEECCC
Confidence 1 6788888888654 44433445544 888888888654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=74.09 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=59.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+++++.+...........+++|++|+|++|. ++......+..+++|++|+++++. ...
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~ 92 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---------LTGIEPNAFEGASHIQELQLGENK------IKE 92 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSCC------CCE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC---------CCCcCHhHcCCcccCCEEECCCCc------CCc
Confidence 44777888877666543221112367788888887774 443333446667777777776432 122
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
+.... +..+++|+.|++++ +.+.... ...+..+++|++|+++++.
T Consensus 93 ~~~~~----~~~l~~L~~L~L~~-N~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 93 ISNKM----FLGLHQLKTLNLYD-NQISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECSSS----STTCTTCCEEECCS-SCCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred cCHHH----hcCCCCCCEEECCC-CcCCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 21111 13356677777776 3444321 1112345666666666554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.98 E-value=7.3e-07 Score=76.26 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=17.0
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|+.|+++++ .+.......+..+++|++|++++|.++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 3444444444442 333332233334444444444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.7e-06 Score=71.87 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=32.5
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
+..+++|+.|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|++++
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~--l~~L~~L~L~~ 111 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--LKSLRLLSLHG 111 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT--CTTCCEEECCS
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC--CCCCCEEECCC
Confidence 445666666666663 444444444556666666666666554332222222 44555555554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.2e-06 Score=69.85 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~N~------l~~ 90 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQ---------IQSLPDGVFDKLTKLTILYLHENK------LQS 90 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCC
T ss_pred CCCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCc---------ceEeChhHccCCCccCEEECCCCC------ccc
Confidence 4567777777655543221111 346677777777663 332222234456666666665432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
+... ....+++|+.|+++++ .+... ...++..+++|++|+++++.
T Consensus 91 ~~~~----~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 91 LPNG----VFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCHH----HhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCC
Confidence 1111 1123556666666652 33321 11112334555555555543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.88 E-value=9.3e-07 Score=84.80 Aligned_cols=215 Identities=9% Similarity=0.151 Sum_probs=121.3
Q ss_pred CCcEEEeec--CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 69 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 69 ~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+|+.+.+.. ..++...+ ..|++|+.+++..+. ++..+-..+. +.+|+.+.+..+ ...
T Consensus 158 ~L~~i~lp~~l~~I~~~aF----~~c~~L~~l~l~~n~---------l~~I~~~aF~-~~~L~~l~lp~~-------l~~ 216 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIF----YYCYNLKKADLSKTK---------ITKLPASTFV-YAGIEEVLLPVT-------LKE 216 (401)
T ss_dssp CCCEEECCTTCCEECSSTT----TTCTTCCEEECTTSC---------CSEECTTTTT-TCCCSEEECCTT-------CCE
T ss_pred CceEEEeCCCccEehHHHh----hCcccCCeeecCCCc---------ceEechhhEe-ecccCEEEeCCc-------hhe
Confidence 588888863 23443332 478899999998763 3332222333 578888888522 333
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
+....+ ..|++|+.+.+.. ++...+... +.. .+|+.+.+...- .+... .+..|++|+.+.+.+....
T Consensus 217 I~~~aF----~~~~~L~~l~l~~--~l~~I~~~a-F~~-~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 217 IGSQAF----LKTSQLKTIEIPE--NVSTIGQEA-FRE-SGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp ECTTTT----TTCTTCCCEECCT--TCCEECTTT-TTT-CCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCC
T ss_pred ehhhHh----hCCCCCCEEecCC--CccCccccc-ccc-CCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCcccc
Confidence 333322 4578888888865 222211111 122 578888885421 12222 2347788888888663210
Q ss_pred ----CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCC
Q 011317 226 ----TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301 (488)
Q Consensus 226 ----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l 301 (488)
...+..++..|++|+.+.+.+ .+...+..++.+|++|+.+.|..+ +...+...+. +| +|+.+.+.++. +
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~--~~-~L~~l~l~~n~-~ 357 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN--NT-GIKEVKVEGTT-P 357 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS--SS-CCCEEEECCSS-C
T ss_pred CCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC--CC-CCCEEEEcCCC-C
Confidence 011223455788999998875 466666677788899999998664 3222222222 36 89999988743 2
Q ss_pred CHHHHHHHhccCCCCCeeEEecCC
Q 011317 302 TDKCISALFDGTSKLQLQELDLSN 325 (488)
Q Consensus 302 ~~~~~~~l~~~~~~~~L~~L~l~~ 325 (488)
..-. .....++. .+++.|.+..
T Consensus 358 ~~l~-~~~F~~~~-~~l~~l~vp~ 379 (401)
T 4fdw_A 358 PQVF-EKVWYGFP-DDITVIRVPA 379 (401)
T ss_dssp CBCC-CSSCCCSC-TTCCEEEECG
T ss_pred cccc-cccccCCC-CCccEEEeCH
Confidence 2100 00111121 4677887765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.4e-06 Score=69.75 Aligned_cols=12 Identities=0% Similarity=0.119 Sum_probs=6.8
Q ss_pred CCCCCeEeecCC
Q 011317 341 RVPISELRVRQC 352 (488)
Q Consensus 341 ~~~L~~L~l~~~ 352 (488)
+++|+.|++++|
T Consensus 123 l~~L~~L~l~~N 134 (177)
T 2o6r_A 123 LTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS
T ss_pred CcccCEEEecCC
Confidence 455555555555
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.77 E-value=6e-06 Score=79.32 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=53.8
Q ss_pred CCcEEEeec--CccChhHHHHHHhcCCCccEEeccCC-CCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 69 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDA-PLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 69 ~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.|+++.+.. ..+++..+ ..|.+|+.+.+..+ +. .++..+-.+|..|.+|+.+.+... ..
T Consensus 65 ~L~sI~iP~svt~Ig~~AF----~~C~~L~~i~~~~n~p~-------~l~~Ig~~aF~~c~~L~~i~~~~~-------~~ 126 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNAF----YNCTSLKRVTIQDNKPS-------CVKKIGRQAFMFCSELTDIPILDS-------VT 126 (394)
T ss_dssp CCCEEEECTTCCEECTTTT----TTCTTCCEEEEGGGCCC-------CCCEECTTTTTTCTTCCBCGGGTT-------CS
T ss_pred cCEEEEECCCeeEEhHHHh----hCCccCceEeecCCCCC-------eeeEechhhchhcccceeeccCCc-------cc
Confidence 477777763 34555443 46888888888654 21 233333445666777777766321 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCC-CCCCHHHHHHHHHhCCCCceEEecC
Q 011317 146 RVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSH 195 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~ 195 (488)
.+....+ ..|.+|+.+.+... ..+.+. .+..+..|+.+.+..
T Consensus 127 ~I~~~aF----~~c~~L~~i~lp~~~~~I~~~----~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAF----HHCEELDTVTIPEGVTSVADG----MFSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTT----TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCT
T ss_pred eehhhhh----hhhcccccccccceeeeeccc----ceecccccccccccc
Confidence 2222211 34677777777541 122221 124566777777653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.1e-06 Score=84.51 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=72.2
Q ss_pred hcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcC
Q 011317 90 QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGG 169 (488)
Q Consensus 90 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 169 (488)
..|.+|+++.|... ++..+-.+|..|.+|+.+++..+ ...+.+..+ ..|++|+.+.+..
T Consensus 68 ~~c~~L~~i~lp~~----------i~~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF----~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 68 QGCRKVTEIKIPST----------VREIGEFAFENCSKLEIINIPDS-------VKMIGRCTF----SGCYALKSILLPL 126 (394)
T ss_dssp TTCTTEEEEECCTT----------CCEECTTTTTTCTTCCEECCCTT-------CCEECTTTT----TTCTTCCCCCCCT
T ss_pred hCCCCceEEEeCCC----------ccCcchhHhhCCCCCcEEEeCCC-------ceEccchhh----cccccchhhcccC
Confidence 46889999999753 44444456788999999998532 223332222 3466777665543
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCC
Q 011317 170 FCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKN 249 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 249 (488)
.+...+... +..+..+..........+... ....|++|+.+.+... +...+...+..|++|+.+.+.. .
T Consensus 127 --~l~~i~~~a-F~~~~~~~~~~~~~~~~i~~~----aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~--~ 195 (394)
T 4fs7_A 127 --MLKSIGVEA-FKGCDFKEITIPEGVTVIGDE----AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR--N 195 (394)
T ss_dssp --TCCEECTTT-TTTCCCSEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT--T
T ss_pred --ceeeeccee-eecccccccccCccccccchh----hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC--C
Confidence 111111111 122322222222222212211 2335666777766542 1111122344566666666654 2
Q ss_pred CChHHHHhhcCCCCccEEEeCC
Q 011317 250 LGDEALRAISSLPQLKILLLDG 271 (488)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~ 271 (488)
+...+..++..++.|+.+.+..
T Consensus 196 ~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 196 LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCEECTTTTTTCTTCCBCCCCT
T ss_pred ceEeCchhhccccccceeecCC
Confidence 3333333444555555554443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.3e-05 Score=83.22 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=57.1
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHh
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALF 310 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~ 310 (488)
+..+++|+.|+|+++ .+.... ..+..+++|++|+|++|.++... ..+. .+++|+.|+|+++. ++ +..+..+
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp-~~~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l- 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNIS-ANIFKYDFLTRLYLNGNSLTELP-AEIK--NLSNLRVLDLSHNR-LTSLPAELGSC- 292 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCC-GGGGGCCSCSCCBCTTSCCSCCC-GGGG--GGTTCCEEECTTSC-CSSCCSSGGGG-
T ss_pred hccCCCCcEEECCCC-CCCCCC-hhhcCCCCCCEEEeeCCcCcccC-hhhh--CCCCCCEEeCcCCc-CCccChhhcCC-
Confidence 446677777777775 333221 22336677777777777665211 2233 36777777777653 33 1112222
Q ss_pred ccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCH
Q 011317 311 DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 357 (488)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 357 (488)
++|++|+|+++ .++.-. .. ...+++|+.|+|++| .++.
T Consensus 293 -----~~L~~L~L~~N-~l~~lp-~~-~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 293 -----FQLKYFYFFDN-MVTTLP-WE-FGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp -----TTCSEEECCSS-CCCCCC-SS-TTSCTTCCCEECTTS-CCCS
T ss_pred -----CCCCEEECCCC-CCCccC-hh-hhcCCCccEEeCCCC-ccCC
Confidence 66777777663 443110 01 124666777777666 4543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.5e-05 Score=73.95 Aligned_cols=281 Identities=12% Similarity=0.166 Sum_probs=139.9
Q ss_pred CCCCCcEEEeecC------ccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccc
Q 011317 66 ILPGIQKLCLSVD------YITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEF 139 (488)
Q Consensus 66 ~l~~L~~L~l~~~------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~ 139 (488)
.+.+|+.+.+..+ .++...+ ..|.+|+.+.+..+ ++..+-..+..|.+|+.+.+...
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF----~~c~~L~~i~~~~~----------~~~I~~~aF~~c~~L~~i~lp~~--- 147 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAF----MFCSELTDIPILDS----------VTEIDSEAFHHCEELDTVTIPEG--- 147 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTT----TTCTTCCBCGGGTT----------CSEECTTTTTTCTTCCEEECCTT---
T ss_pred CCccCceEeecCCCCCeeeEechhhc----hhcccceeeccCCc----------cceehhhhhhhhcccccccccce---
Confidence 3788999988632 2333332 36788888777653 44434445678889999988532
Q ss_pred ccccccccChHHHHHHHHhCCCCCEEEEcCC-CCCCHHHHHHHHHhCCCCceEEecCCCC-CCHHHHHHHHhcCCCCCEE
Q 011317 140 LITYFRRVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHV 217 (488)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L 217 (488)
...+.+..+ ..|.+|+.+.+... ..+....+ ...+|+.+.+..... +... ....|.+++..
T Consensus 148 ----~~~I~~~~F----~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~~~i~~~----af~~c~~l~~~ 210 (394)
T 4gt6_A 148 ----VTSVADGMF----SYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKVTRIGTN----AFSECFALSTI 210 (394)
T ss_dssp ----CCEECTTTT----TTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTCCEECTT----TTTTCTTCCEE
T ss_pred ----eeeecccce----ecccccccccccceeeEeccccc-----cccceeEEEECCcccccccc----hhhhcccccee
Confidence 223333222 45788888888651 12222211 245688887764221 1111 12345566666
Q ss_pred EecCCCCCCHHH------------HHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC--ccchhHHHHHH
Q 011317 218 CLRWCNLLTNHA------------IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS--DISDVGVSYLR 283 (488)
Q Consensus 218 ~l~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~ 283 (488)
............ .........+..+.+.. .+...+..++..+++|+.+.+... .+.... +.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~a---F~ 285 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGA---FM 285 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTT---TT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCcc---cc
Confidence 554321100000 00000122334444432 233333445667788888887654 222222 22
Q ss_pred hhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCC-CCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 284 LTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 284 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
.++.|+.+.+.. .++.-+-. .+.+| .+|+++.|... ..+.+..+. .|.+|+.+.|... ++..+-.+
T Consensus 286 --~c~~L~~i~l~~--~i~~I~~~-aF~~c--~~L~~i~lp~~v~~I~~~aF~----~C~~L~~i~ip~s--v~~I~~~a 352 (394)
T 4gt6_A 286 --NCPALQDIEFSS--RITELPES-VFAGC--ISLKSIDIPEGITQILDDAFA----GCEQLERIAIPSS--VTKIPESA 352 (394)
T ss_dssp --TCTTCCEEECCT--TCCEECTT-TTTTC--TTCCEEECCTTCCEECTTTTT----TCTTCCEEEECTT--CCBCCGGG
T ss_pred --cccccccccCCC--cccccCce-eecCC--CCcCEEEeCCcccEehHhHhh----CCCCCCEEEECcc--cCEEhHhH
Confidence 477888888754 23211111 12234 77888888641 122233333 6888888888543 22211112
Q ss_pred HHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+. .|++|+.+++.++. .....+. .|.+|+.+.+..+
T Consensus 353 F~---------~C~~L~~i~~~~~~----~~~~~~~--~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 353 FS---------NCTALNNIEYSGSR----SQWNAIS--TDSGLQNLPVAPG 388 (394)
T ss_dssp GT---------TCTTCCEEEESSCH----HHHHTCB--CCCCC--------
T ss_pred hh---------CCCCCCEEEECCce----eehhhhh--ccCCCCEEEeCCC
Confidence 22 78888888888754 1223333 4778888877644
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.3e-05 Score=79.27 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCH--HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTD--LVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
++++.|.|.+ ..+... ...++ ....|+.+.+........ .........+++|+.|+++++ .+...+ ..+..++
T Consensus 173 ~~~~~l~L~~-n~~~~~-~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDEA-NQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNIS-ANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTS-CCSCCC-GGGGGCC
T ss_pred CccceEEeeC-CCCCcc-hhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCC-hhhcCCC
Confidence 5677788876 344332 11211 123444444433211000 011233456789999999985 343221 1344789
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSK 315 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~ 315 (488)
+|++|+|+++ .++ .....+..+++|+.|+|++|.++.. ...+.. +++|+.|++++|. ++ +..+. .+
T Consensus 248 ~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~--l~~L~~L~L~~N~-l~~lp~~~~------~l 315 (727)
T 4b8c_D 248 FLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGS--CFQLKYFYFFDNM-VTTLPWEFG------NL 315 (727)
T ss_dssp SCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGG--GTTCSEEECCSSC-CCCCCSSTT------SC
T ss_pred CCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcC--CCCCCEEECCCCC-CCccChhhh------cC
Confidence 9999999986 555 2235577899999999999988732 223334 8999999999864 54 11122 23
Q ss_pred CCeeEEecCCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDN 332 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~ 332 (488)
++|++|+|++ +.++..
T Consensus 316 ~~L~~L~L~~-N~l~~~ 331 (727)
T 4b8c_D 316 CNLQFLGVEG-NPLEKQ 331 (727)
T ss_dssp TTCCCEECTT-SCCCSH
T ss_pred CCccEEeCCC-CccCCC
Confidence 8999999999 567643
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.47 E-value=4.1e-05 Score=63.76 Aligned_cols=11 Identities=9% Similarity=0.008 Sum_probs=5.0
Q ss_pred CCCceEEecCC
Q 011317 186 SNLYKLRVSHG 196 (488)
Q Consensus 186 ~~L~~L~l~~~ 196 (488)
++|+.|+++++
T Consensus 30 ~~l~~L~L~~N 40 (170)
T 3g39_A 30 TTTQVLYLYDN 40 (170)
T ss_dssp TTCSEEECCSS
T ss_pred CCCcEEEcCCC
Confidence 34444554443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.46 E-value=4.2e-05 Score=63.95 Aligned_cols=11 Identities=9% Similarity=0.284 Sum_probs=5.3
Q ss_pred CCCceEEecCC
Q 011317 186 SNLYKLRVSHG 196 (488)
Q Consensus 186 ~~L~~L~l~~~ 196 (488)
++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N 43 (174)
T 2r9u_A 33 TDKQRLWLNNN 43 (174)
T ss_dssp TTCSEEECCSS
T ss_pred CCCcEEEeCCC
Confidence 34555555543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00022 Score=59.32 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=15.0
Q ss_pred CCCcEEEeecCccChhHHHHHHhcCCCccEEeccCC
Q 011317 68 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 103 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 103 (488)
++|++|+|+.|.+.......+ ..+++|++|+|++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS
T ss_pred CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCC
Confidence 445555555444433211111 13445555555554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00023 Score=59.39 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=19.2
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
.+++|+.|+|++ +.+... ....+..+++|++|+++++.
T Consensus 79 ~l~~L~~L~L~~-N~l~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLND-NHLKSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCC-Ccccee-CHHHhccccCCCEEEeCCCC
Confidence 355666666665 344322 11223445666666666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00047 Score=64.66 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=15.2
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRD 246 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (488)
.+++|+.|+++++ .+.......+..+++|+.|+|++
T Consensus 54 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 54 GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred cccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 3445555555542 33222222233445555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00071 Score=63.46 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=32.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|+.|++++.+.+.......+..+++|+.|+|+++ .+.......+..+++|+.|+|++|.++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 34455666665423333322223445555666666553 444444444555555666666555444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0057 Score=54.39 Aligned_cols=83 Identities=25% Similarity=0.308 Sum_probs=44.2
Q ss_pred hcCCCCCEEEecCCCCCCHH-HH-HHhhCCCCcCEEeccCCCCCChH-HHHhhcCCCCccEEEeCCCccch-----hHH-
Q 011317 209 ATSLSLTHVCLRWCNLLTNH-AI-KSLASNTGIKVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISD-----VGV- 279 (488)
Q Consensus 209 ~~~~~L~~L~l~~~~~~~~~-~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~-----~~~- 279 (488)
..+++|+.|+++++ .+... ++ ..+..+++|+.|+|+++ .+.+. .+..+..+ +|++|++++|.+.. ...
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 45667777777763 33321 11 12336777777777774 44333 33333334 77777777776653 111
Q ss_pred HHHHhhcCCCccEEec
Q 011317 280 SYLRLTVITSLVKLSL 295 (488)
Q Consensus 280 ~~l~~~~~~~L~~L~l 295 (488)
..+.. .+|+|+.|+-
T Consensus 244 ~~il~-~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRE-RFPKLLRLDG 258 (267)
T ss_dssp HHHHH-HCTTCCEESS
T ss_pred HHHHH-HCcccCeECC
Confidence 12222 4677776654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0052 Score=54.68 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=26.4
Q ss_pred HHHHHhCCCCCEEEEcCCCCCCHH-HHHHHHHhCCCCceEEecCCC
Q 011317 153 LLMADKCASMESICLGGFCRVTDT-GFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 197 (488)
..+...+++|+.|+|++ +.+... .+..++..+++|+.|+|+++.
T Consensus 163 ~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred HHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 33445677778887777 455431 233344567777777777654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.016 Score=54.84 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=78.8
Q ss_pred hhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC-CC
Q 011317 121 QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QL 199 (488)
Q Consensus 121 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~ 199 (488)
.+..+.+|+.+.+... ...+....+ ..|.+|+.+.+.. .+...+. ..+..+.+|+.+.+...- .+
T Consensus 212 ~f~~~~~l~~i~~~~~-------~~~i~~~~f----~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~~i~~i 277 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-------VTTLGDGAF----YGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYAKVKTV 277 (379)
T ss_dssp TTTTCSSCSEEECCTT-------CCEECTTTT----TTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECCCCSEE
T ss_pred ccccccccceeeeccc-------eeEEccccc----cCCccceEEEcCC--CccEeCc-cccceeehhccccccccceec
Confidence 3456778888887422 222222211 3577888888865 2222111 123567888888886421 12
Q ss_pred CHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 200 TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 200 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
.. .....|++|+.+.+.+. .+...+-.++..|.+|+.+.+.. .+...+..++.+|++|+.+.+..+
T Consensus 278 ~~----~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PY----LLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CT----TTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cc----ccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 21 12347788999988752 33322233456889999999865 455566667888899998888654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.039 Score=52.10 Aligned_cols=182 Identities=9% Similarity=0.089 Sum_probs=105.9
Q ss_pred hcCCCccEEeccCCCCCCCcc---ccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEE
Q 011317 90 QGLVSLTHLDLRDAPLIEPRI---TFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESIC 166 (488)
Q Consensus 90 ~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 166 (488)
..+.+++.+.+.......... ...........+..+..+..+.+... ...+.... ...+.+|+.+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~----f~~~~~l~~i~ 223 (379)
T 4h09_A 155 YKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-------VKTVTAYG----FSYGKNLKKIT 223 (379)
T ss_dssp TTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-------CCEECTTT----TTTCSSCSEEE
T ss_pred cccccccccccccccceeecccceecccccceeccccccccccccccccc-------eeEEeecc----cccccccceee
Confidence 368899998887643210000 00000001112335666777766422 11222211 13478899988
Q ss_pred EcCCCCCCHHHHHHHHHhCCCCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEecc
Q 011317 167 LGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLR 245 (488)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (488)
+.. .+...+. ..+..+..|+.+.+...- .+... ....+.+|+.+.+.. .+...+..++..|++|+.+.+.
T Consensus 224 ~~~--~~~~i~~-~~f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 224 ITS--GVTTLGD-GAFYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp CCT--TCCEECT-TTTTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEEC
T ss_pred ecc--ceeEEcc-ccccCCccceEEEcCCCccEeCcc----ccceeehhccccccc--cceecccccccccccccccccc
Confidence 865 2222111 123568899999987531 12221 234678999999965 3333333456689999999997
Q ss_pred CCCCCChHHHHhhcCCCCccEEEeCCC--ccchhHHHHHHhhcCCCccEEecCC
Q 011317 246 DCKNLGDEALRAISSLPQLKILLLDGS--DISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
+. .+...+-.++.+|++|+.+.|... .+.+.. +. +|++|+.+.+..
T Consensus 295 ~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~a---F~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 295 NS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYA---FK--NCKALSTISYPK 342 (379)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTT---TT--TCTTCCCCCCCT
T ss_pred cc-ccceehhhhhcCCCCCCEEEcCccccEEHHHH---hh--CCCCCCEEEECC
Confidence 63 455556667889999999999764 333333 33 489999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 488 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 7e-08
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 21/246 (8%)
Query: 206 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265
D++ LS + R + + S ++ +DL + +S +L+
Sbjct: 15 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74
Query: 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL------- 318
L L+G +SD V+ L ++LV+L+L GC ++ + L S+L
Sbjct: 75 NLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132
Query: 319 ----------QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 368
+ L+ +G + +R + D S +
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192
Query: 369 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPF 428
+ + + ++ L L C I L + P L+ L V G V L L + P
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGIVPDGTLQLLKEALPH 250
Query: 429 LNVACR 434
L + C
Sbjct: 251 LQINCS 256
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 3e-07
Identities = 44/278 (15%), Positives = 80/278 (28%), Gaps = 25/278 (8%)
Query: 27 LASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVG 86
L + L G + S V P Q + +Q + LS I + +
Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS--PFRVQHMDLSNSVIEVSTLH 64
Query: 87 TISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFL-ITYFR 145
I L +L L L ++ + + ++ L L+L F
Sbjct: 65 GILSQCSKLQNLSLEGLRL---------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115
Query: 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFH 205
++ L + + V + S K
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175
Query: 206 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265
++ H+ L +L N + ++ L L C ++ E L + +P LK
Sbjct: 176 NL-------VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228
Query: 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 303
L + G + D + L +L L + C T
Sbjct: 229 TLQVFGI-VPDGTLQLL----KEALPHLQIN-CSHFTT 260
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (118), Expect = 3e-07
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 239 IKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDGSDISDVGVSYLR--LTVITSLVKLSL 295
I+ LD++ C+ L D + L Q +++ LD +++ + L V +L +L+L
Sbjct: 4 IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 296 RGCKRLTDKCISALFDG--TSKLQLQELDLSN 325
R + L D + + G T ++Q+L L N
Sbjct: 63 RSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 7e-06
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISS----LPQLKI 266
SL + + ++ L + L +V+ L DC L + + ISS P L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 59
Query: 267 LLLDGSDISDVGVSYL---RLTVITSLVKLSLRGC 298
L L +++ DVGV + T + KLSL+ C
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.003
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 187 NLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAI---KSLASNTGIKVLD 243
++ L + +L+D + ++ V L C L +L N + L+
Sbjct: 3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 244 LRDCKNLGDEALRAISSLPQLKILLL 269
LR LGD + + Q +
Sbjct: 62 LRSN-ELGDVGVHCVLQGLQTPSCKI 86
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.9 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.9 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.86 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.81 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.66 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.65 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.48 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.26 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.13 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.13 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.12 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.1 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.1 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.09 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.06 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.98 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.96 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.89 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.87 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.85 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.77 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.69 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.63 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.59 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.58 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.56 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.46 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.45 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.31 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.3 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.23 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.19 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.06 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.0 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.23 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.06 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.74 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.32 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.8e-23 Score=189.04 Aligned_cols=250 Identities=18% Similarity=0.262 Sum_probs=188.8
Q ss_pred CEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH-hhCCCCcCE
Q 011317 163 ESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKV 241 (488)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~ 241 (488)
++||+++ ..+....+..+... .+..+.++.... .. +.. ......+|++|++++| .+....+.. +..+++|++
T Consensus 3 ~~lDLs~-~~l~~~~l~~l~~~--~~~~lrl~~~~~-~~-~~~-~~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~ 75 (284)
T d2astb2 3 QTLDLTG-KNLHPDVTGRLLSQ--GVIAFRCPRSFM-DQ-PLA-EHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQN 75 (284)
T ss_dssp SEEECTT-CBCCHHHHHHHHHT--TCSEEECTTCEE-CS-CCC-SCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSE
T ss_pred CEEECCC-CCCCchHHHHHHhc--cceEeecccccc-cc-chh-hhccCCCCCEEECCCC-ccCHHHHHHHHHhCCCccc
Confidence 4567776 45555545554432 334444433211 00 000 0113347888888875 555555444 447888888
Q ss_pred EeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHh-ccCCCCCee
Q 011317 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF-DGTSKLQLQ 319 (488)
Q Consensus 242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~~~L~ 319 (488)
|++++| .+.+..+..++.+++|++|++++| .+++.++..+.. .+++|++|++++|..+++.++.... ..+ ++|+
T Consensus 76 L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~-~~~~L~~L~ls~c~~~~~~~~~~~~~~~~--~~L~ 151 (284)
T d2astb2 76 LSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVS--ETIT 151 (284)
T ss_dssp EECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSC--TTCC
T ss_pred cccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhH-HHHhccccccccccccccccchhhhcccc--cccc
Confidence 888887 577777778888888888888886 788888887776 6899999999999889988776543 334 7899
Q ss_pred EEecCCC-CCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhh
Q 011317 320 ELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLK 398 (488)
Q Consensus 320 ~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 398 (488)
+|++++| ..+++.++..+...||+|++|++++|..+++.++..+. .+++|++|++++|..+++.++..+.
T Consensus 152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~---------~~~~L~~L~L~~C~~i~~~~l~~L~ 222 (284)
T d2astb2 152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------QLNYLQHLSLSRCYDIIPETLLELG 222 (284)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------GCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred hhhhcccccccccccccccccccccccccccccccCCCchhhhhhc---------ccCcCCEEECCCCCCCChHHHHHHh
Confidence 9999987 46889999999888999999999999889998887776 6899999999999989998888887
Q ss_pred ccCCCCccEEEecCCCCHHHHHHHHhhCCCceeecc
Q 011317 399 KPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACR 434 (488)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 434 (488)
. +|+|+.|++++|.....+..+....|.+++.+.
T Consensus 223 ~--~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i~~~ 256 (284)
T d2astb2 223 E--IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 256 (284)
T ss_dssp G--CTTCCEEECTTSSCTTCHHHHHHHSTTSEESCC
T ss_pred c--CCCCCEEeeeCCCCHHHHHHHHHhCccccccCc
Confidence 5 999999999999888889999999999998654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.1e-22 Score=182.09 Aligned_cols=206 Identities=17% Similarity=0.244 Sum_probs=177.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
..+|++|+++++.+++..+..+...|++|++|++++|. +++..+..++.+++|++|++++ +..
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~---------l~~~~~~~l~~~~~L~~L~Ls~--------c~~ 107 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR---------LSDPIVNTLAKNSNLVRLNLSG--------CSG 107 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB---------CCHHHHHHHTTCTTCSEEECTT--------CBS
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC---------CCcHHHHHHhcCCCCcCccccc--------ccc
Confidence 45899999999999999999888899999999999984 7888888899999999999954 567
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHH-hCCCCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH-SCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
+++.++..+...|++|++|++++|..+++.++..... .+++|++|+++++. .+++.++..+...+|+|++|++++|..
T Consensus 108 itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 187 (284)
T d2astb2 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187 (284)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred ccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence 8899998888899999999999998898877765444 45789999999864 588888888888999999999999888
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCcc
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 291 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~ 291 (488)
+++.++..+..+++|++|++++|..+++.++..++.+|+|+.|++.+| +++.++..+.. .+|+|+
T Consensus 188 itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~-~lp~L~ 252 (284)
T d2astb2 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE-ALPHLQ 252 (284)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH-HSTTSE
T ss_pred CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHH-hCcccc
Confidence 888888888899999999999998898888888888899999999888 77777777766 577776
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.8e-19 Score=174.50 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=50.4
Q ss_pred CCCCCCcEEEeecCccChhHHHHHH---hcCCCccEEeccCCCCCCCccccccChHHHHhhh-----cCCCccEEEcccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTIS---QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-----QHGKLKHLSLIRS 136 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-----~~~~L~~L~l~~~ 136 (488)
+.+++++.|+|.++.+++..+..++ ..+++|++|+|++|. +++.++..+. ...+|++|+++.+
T Consensus 24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~---------i~~~~~~~l~~~l~~~~~~L~~L~L~~n 94 (460)
T d1z7xw1 24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---------LGDVGVHCVLQGLQTPSCKIQKLSLQNC 94 (460)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---------CHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc---------CChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence 3356666677766666665554443 356667777776663 5555555443 1235677766532
Q ss_pred cccccccccccChHHHHHHH---HhCCCCCEEEEcCCCCCCHH
Q 011317 137 QEFLITYFRRVNDLGILLMA---DKCASMESICLGGFCRVTDT 176 (488)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~ 176 (488)
.+++.++..+. ..+++|++|+++++ .+.+.
T Consensus 95 ---------~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~ 127 (460)
T d1z7xw1 95 ---------CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDA 127 (460)
T ss_dssp ---------CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHH
T ss_pred ---------Cccccccccccchhhccccccccccccc-cchhh
Confidence 24443333322 34566777776663 44443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.7e-17 Score=161.63 Aligned_cols=383 Identities=22% Similarity=0.292 Sum_probs=263.1
Q ss_pred ccceeeeeecccccchhhHHHHHHHhhhccceeeecccc--ccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCcc
Q 011317 3 GSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYIS--SVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYI 80 (488)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 80 (488)
+|+.|.+ .+..+.+..+.+++..++ +++.|.+.... ......+.. ....+++|++|+|+.+.+
T Consensus 3 ~l~~ld~--~~~~i~~~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~------------~L~~~~~L~~LdLs~N~i 67 (460)
T d1z7xw1 3 DIQSLDI--QCEELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISS------------ALRVNPALAELNLRSNEL 67 (460)
T ss_dssp EEEEEEE--ESCCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHH------------HHHTCTTCCEEECTTCCC
T ss_pred CCCEEEe--eCCcCChHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHH------------HHhcCCCCCEEECcCCcC
Confidence 3566666 566778888899999998 99999998542 111111100 023478999999999999
Q ss_pred ChhHHHHHHhcC----CCccEEeccCCCCCCCccccccChHHHHh----hhcCCCccEEEcccccccccccccccChHHH
Q 011317 81 TDAMVGTISQGL----VSLTHLDLRDAPLIEPRITFDLTNSGLQQ----INQHGKLKHLSLIRSQEFLITYFRRVNDLGI 152 (488)
Q Consensus 81 ~~~~~~~~~~~~----~~L~~L~L~~~~~~~~~~~~~~~~~~l~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 152 (488)
++..+..++..+ ++|++|+|++|. +++.+... +..+++|++|+++++. +++.++
T Consensus 68 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~---------it~~~~~~l~~~l~~~~~L~~L~L~~N~---------i~~~~~ 129 (460)
T d1z7xw1 68 GDVGVHCVLQGLQTPSCKIQKLSLQNCC---------LTGAGCGVLSSTLRTLPTLQELHLSDNL---------LGDAGL 129 (460)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSC---------CBGGGHHHHHHHTTSCTTCCEEECCSSB---------CHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCCEEECCCCC---------ccccccccccchhhcccccccccccccc---------chhhhh
Confidence 998888887643 479999999984 76655443 4578999999997542 222222
Q ss_pred HH--------------------------------HHHhCCCCCEEEEcCCCCCCHHHHHHHH----HhCCCCceEEecCC
Q 011317 153 LL--------------------------------MADKCASMESICLGGFCRVTDTGFKTIL----HSCSNLYKLRVSHG 196 (488)
Q Consensus 153 ~~--------------------------------l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~ 196 (488)
.. .....+.++.+.++++ ...+.+...+. ........+.+..+
T Consensus 130 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 208 (460)
T d1z7xw1 130 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC 208 (460)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred hhhhhcccccccccccccccccccchhhhccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 21 1233566777777764 44433333222 22235566777665
Q ss_pred CCCCH--HHHHHHHhcCCCCCEEEecCCCCCCHHHHHH-----hhCCCCcCEEeccCCCCCChHHH----HhhcCCCCcc
Q 011317 197 TQLTD--LVFHDISATSLSLTHVCLRWCNLLTNHAIKS-----LASNTGIKVLDLRDCKNLGDEAL----RAISSLPQLK 265 (488)
Q Consensus 197 ~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~ 265 (488)
..... ..........+.++.+.+.++ ......... ....+.++.++++++ .+..... ..+...+.++
T Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~l~~~~n-~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~ 286 (460)
T d1z7xw1 209 GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLK 286 (460)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCC
T ss_pred cccchhhhcccccccccccccccchhhc-cccccccchhhcccccccccccccccccc-ccccccccccccccccccccc
Confidence 43222 223334456789999999885 443333222 225789999999986 4544433 2344688999
Q ss_pred EEEeCCCccchhHHHHHHh---hcCCCccEEecCCCCCCCHHHHHHH---hccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 266 ILLLDGSDISDVGVSYLRL---TVITSLVKLSLRGCKRLTDKCISAL---FDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 266 ~L~l~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
.++++++.+++.++..+.. ...+.|+.+.+++|. +++.++..+ ...+ ++|++|+|++ +.+++.++..+++
T Consensus 287 ~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~--~~L~~L~Ls~-N~i~~~g~~~l~~ 362 (460)
T d1z7xw1 287 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQN--RFLLELQISN-NRLEDAGVRELCQ 362 (460)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHC--SSCCEEECCS-SBCHHHHHHHHHH
T ss_pred ccccccccccccccchhhccccccccccccccccccc-hhhhhhhhcccccccc--cchhhhheee-ecccCcccchhhh
Confidence 9999999999888776644 134689999999974 665554443 3333 7899999999 5899888777653
Q ss_pred ----cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecC
Q 011317 340 ----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTG 412 (488)
Q Consensus 340 ----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~ 412 (488)
..+.|+.|++++| .+++.++..++..+. .+++|++|+|++|+ +++.++..+.. .....|+.|.+.+
T Consensus 363 ~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~-----~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~l~l~~ 435 (460)
T d1z7xw1 363 GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL-----ANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYD 435 (460)
T ss_dssp HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH-----HCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred hhhcccCCCCEEECCCC-CCChHHHHHHHHHHh-----cCCCCCEEECCCCc-CCHHHHHHHHHHHHhCCCccCEEECCC
Confidence 4567999999999 899999888876554 68999999999997 99988776643 1245799999999
Q ss_pred CCC----HHHHHHHHhhCCCceee
Q 011317 413 SVN----RDILDALARSRPFLNVA 432 (488)
Q Consensus 413 ~~~----~~~~~~~~~~~~~l~~~ 432 (488)
+.. ...+.++....|.+++.
T Consensus 436 ~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 436 IYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEe
Confidence 862 44556667788888764
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.66 E-value=5.2e-15 Score=138.09 Aligned_cols=246 Identities=19% Similarity=0.205 Sum_probs=150.2
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHh---CCCCceEEecCCCC--C---CHHHHH---HHHhcCCCCCEEEecCCCCCCH
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHS---CSNLYKLRVSHGTQ--L---TDLVFH---DISATSLSLTHVCLRWCNLLTN 227 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~--~---~~~~~~---~~~~~~~~L~~L~l~~~~~~~~ 227 (488)
..+|+.|+|++ +.+.+.++..+... .++|+.|+++++.. . ...... .....+++|++|+++++ .++.
T Consensus 30 ~~~l~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~ 107 (344)
T d2ca6a1 30 DDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP 107 (344)
T ss_dssp CSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred CCCCCEEECcC-CcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-cccc
Confidence 55566666665 35555554444333 34556666654321 1 111222 22234556666666664 3333
Q ss_pred HHHHH----hhCCCCcCEEeccCCCCCChHHHHhh-------------cCCCCccEEEeCCCccchhHHHHHHh--hcCC
Q 011317 228 HAIKS----LASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGVSYLRL--TVIT 288 (488)
Q Consensus 228 ~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~ 288 (488)
.++.. +..+++|++|+++++ .+.+.+...+ ...+.|+.+.++++.+++.++..+.. ..++
T Consensus 108 ~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~ 186 (344)
T d2ca6a1 108 TAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186 (344)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred ccccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence 32222 235566666666664 3333322111 25678888888888887766654432 1478
Q ss_pred CccEEecCCCCCCCHHHHHHHh-cc-CCCCCeeEEecCCCCCCCHHHHHHHH---hcCCCCCeEeecCCCCCCHHHHHHH
Q 011317 289 SLVKLSLRGCKRLTDKCISALF-DG-TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 289 ~L~~L~l~~~~~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l 363 (488)
.|+.|++++| .++++++..+. .. ...++|++|++++ +.+++.+...++ ..+++|++|++++| .+++.++..+
T Consensus 187 ~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l 263 (344)
T d2ca6a1 187 LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAV 263 (344)
T ss_dssp TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHH
T ss_pred hhcccccccc-cccccccccchhhhhcchhhhccccccc-ccccccccccccccccccccchhhhhhcC-ccCchhhHHH
Confidence 8999999886 47776654321 11 1227899999988 468777665553 46788999999998 7999888888
Q ss_pred HcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011317 364 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 414 (488)
Q Consensus 364 ~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 414 (488)
+..+... ..++|++|++++|. |+..++..+.. ..+++|++|++++|.
T Consensus 264 ~~~l~~~---~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 264 VDAFSKL---ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHTC---SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHhhhc---cCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 7654311 35679999999987 88877665554 137889999998875
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.65 E-value=3.9e-14 Score=132.04 Aligned_cols=259 Identities=17% Similarity=0.147 Sum_probs=124.2
Q ss_pred cCCCccEEeccCCCCCCCccccccChHHHHhhh----cCCCccEEEcccccccccccccccChHHHHHH---HHhCCCCC
Q 011317 91 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QHGKLKHLSLIRSQEFLITYFRRVNDLGILLM---ADKCASME 163 (488)
Q Consensus 91 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~ 163 (488)
....|+.|+|++| .+++.++..++ ..++|+.|+++.+.... ........+..+ ...+++|+
T Consensus 29 ~~~~l~~L~Ls~n---------~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~L~ 96 (344)
T d2ca6a1 29 EDDSVKEIVLSGN---------TIGTEAARWLSENIASKKDLEIAEFSDIFTGR---VKDEIPEALRLLLQALLKCPKLH 96 (344)
T ss_dssp HCSCCCEEECTTS---------EECHHHHHHHHHTTTTCTTCCEEECCSCCTTS---CGGGSHHHHHHHHHHHTTCTTCC
T ss_pred hCCCCCEEECcCC---------cCCHHHHHHHHHHHHhCCCCCEEECCCCcccc---cccccchHHHHHHHHHhhCCCcc
Confidence 4566777777765 25555555443 45666666664321100 001111222222 23466677
Q ss_pred EEEEcCCCCCCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHH-HHHhhCCCCc
Q 011317 164 SICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA-IKSLASNTGI 239 (488)
Q Consensus 164 ~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L 239 (488)
.|+++++ .++..+ +...+..+++|++|+++++. +.+.+...+...+ .... .......+.|
T Consensus 97 ~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l--------------~~~~~~~~~~~~~~L 160 (344)
T d2ca6a1 97 TVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARAL--------------QELAVNKKAKNAPPL 160 (344)
T ss_dssp EEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHH--------------HHHHHHHHHHTCCCC
T ss_pred ccccccc-ccccccccchhhhhcccccchheeccccc-ccccccccccccc--------------cccccccccccCccc
Confidence 7777764 443322 33334456677777776654 3333322221110 0000 0011134455
Q ss_pred CEEeccCCCCCChHHHHhh----cCCCCccEEEeCCCccchhHHHHHHh---hcCCCccEEecCCCCCCCHHHHHHHh--
Q 011317 240 KVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGVSYLRL---TVITSLVKLSLRGCKRLTDKCISALF-- 310 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~~~~~~l~-- 310 (488)
+.+.++++ .+.+.+...+ ..++.|+.|+++.|.+++.+...+.. ..+++|+.|+++++ .+++.+...++
T Consensus 161 ~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~ 238 (344)
T d2ca6a1 161 RSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIA 238 (344)
T ss_dssp CEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHH
T ss_pred ceeecccc-cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc-ccccccccccccc
Confidence 55555542 3443333222 24455566666555555544332111 13555666666554 25544433332
Q ss_pred -ccCCCCCeeEEecCCCCCCCHHHHHHHHhc-----CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 311 -DGTSKLQLQELDLSNLPHLSDNGILTLATC-----RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 311 -~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
..+ ++|++|++++| .+++.++..++.. .+.|+.|++++| .+++.++..+...+.. .+++|++|+++
T Consensus 239 l~~~--~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~----~~~~L~~L~l~ 310 (344)
T d2ca6a1 239 LKSW--PNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDE----KMPDLLFLELN 310 (344)
T ss_dssp GGGC--TTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHH----HCTTCCEEECT
T ss_pred cccc--ccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHc----cCCCCCEEECC
Confidence 222 56666666664 5666555554321 245667777666 5666666655544321 35667777776
Q ss_pred CCC
Q 011317 385 NCG 387 (488)
Q Consensus 385 ~~~ 387 (488)
+|.
T Consensus 311 ~N~ 313 (344)
T d2ca6a1 311 GNR 313 (344)
T ss_dssp TSB
T ss_pred CCc
Confidence 665
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=2.7e-15 Score=142.40 Aligned_cols=188 Identities=25% Similarity=0.252 Sum_probs=108.0
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCC
Q 011317 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 263 (488)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 263 (488)
.+++++.+.++++......+ ...+++|++|+++++ .+.+. ..+..+++|+.|+++++ .+.. +..+..+++
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~--~~~~~~~~~ 264 (384)
T d2omza2 195 KLTNLESLIATNNQISDITP----LGILTNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANN-QISN--LAPLSGLTK 264 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCC--CGGGTTCTT
T ss_pred cccccceeeccCCccCCCCc----ccccCCCCEEECCCC-CCCCc--chhhcccccchhccccC-ccCC--CCccccccc
Confidence 45666677666543211111 234567777777764 33322 23456777777777765 3332 223556777
Q ss_pred ccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCC
Q 011317 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 342 (488)
Q Consensus 264 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 342 (488)
|++|+++++.+.... .+. .++.++.+.+..+. ++. ..+. .+++++.|+++++ ++++.. . ...++
T Consensus 265 L~~L~l~~~~l~~~~--~~~--~~~~l~~l~~~~n~-l~~~~~~~------~~~~l~~L~ls~n-~l~~l~--~-l~~l~ 329 (384)
T d2omza2 265 LTELKLGANQISNIS--PLA--GLTALTNLELNENQ-LEDISPIS------NLKNLTYLTLYFN-NISDIS--P-VSSLT 329 (384)
T ss_dssp CSEEECCSSCCCCCG--GGT--TCTTCSEEECCSSC-CSCCGGGG------GCTTCSEEECCSS-CCSCCG--G-GGGCT
T ss_pred CCEeeccCcccCCCC--ccc--cccccccccccccc-cccccccc------hhcccCeEECCCC-CCCCCc--c-cccCC
Confidence 777777776554322 122 36677777776653 321 1111 1277888888874 555321 1 23578
Q ss_pred CCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 343 PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+|++|++++| .+++. ..+. .+++|++|++++|+ +++. ..+.. +++|+.|+++++
T Consensus 330 ~L~~L~L~~n-~l~~l--~~l~---------~l~~L~~L~l~~N~-l~~l--~~l~~--l~~L~~L~L~~N 383 (384)
T d2omza2 330 KLQRLFFANN-KVSDV--SSLA---------NLTNINWLSAGHNQ-ISDL--TPLAN--LTRITQLGLNDQ 383 (384)
T ss_dssp TCCEEECCSS-CCCCC--GGGG---------GCTTCCEEECCSSC-CCBC--GGGTT--CTTCSEEECCCE
T ss_pred CCCEEECCCC-CCCCC--hhHc---------CCCCCCEEECCCCc-CCCC--hhhcc--CCCCCEeeCCCC
Confidence 8888888888 66542 2232 67788888888876 6642 23443 788888888764
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.48 E-value=1e-13 Score=131.34 Aligned_cols=268 Identities=21% Similarity=0.260 Sum_probs=176.2
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.+-. .+ ..+++|++|++++|. +++ +..++.+++|+.|++..+........
T Consensus 63 ~~L~nL~~L~Ls~N~l~~l~--~l-~~L~~L~~L~L~~n~---------i~~--i~~l~~l~~L~~L~~~~~~~~~~~~~ 128 (384)
T d2omza2 63 EYLNNLTQINFSNNQLTDIT--PL-KNLTKLVDILMNNNQ---------IAD--ITPLANLTNLTGLTLFNNQITDIDPL 128 (384)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSSC---------CCC--CGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ccCCCCCEEeCcCCcCCCCc--cc-cCCcccccccccccc---------ccc--cccccccccccccccccccccccccc
Confidence 45788999999988777632 23 478899999999885 332 23466788888887754321100000
Q ss_pred c----------------------------------------cc-------------ChHHHHHHHHhCCCCCEEEEcCCC
Q 011317 145 R----------------------------------------RV-------------NDLGILLMADKCASMESICLGGFC 171 (488)
Q Consensus 145 ~----------------------------------------~~-------------~~~~l~~l~~~~~~L~~L~l~~~~ 171 (488)
. .+ ...........+++++.++++++
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n- 207 (384)
T d2omza2 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN- 207 (384)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCC-
Confidence 0 00 00000011245788999999884
Q ss_pred CCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCC
Q 011317 172 RVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLG 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 251 (488)
.+..... ...+++|++|+++++.. .+.+ ....+++|+.|+++++ .+.. ...+..+++|+.|+++++ .+.
T Consensus 208 ~i~~~~~---~~~~~~L~~L~l~~n~l-~~~~---~l~~l~~L~~L~l~~n-~l~~--~~~~~~~~~L~~L~l~~~-~l~ 276 (384)
T d2omza2 208 QISDITP---LGILTNLDELSLNGNQL-KDIG---TLASLTNLTDLDLANN-QISN--LAPLSGLTKLTELKLGAN-QIS 276 (384)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSCC-CCCG---GGGGCTTCSEEECCSS-CCCC--CGGGTTCTTCSEEECCSS-CCC
T ss_pred ccCCCCc---ccccCCCCEEECCCCCC-CCcc---hhhcccccchhccccC-ccCC--CCcccccccCCEeeccCc-ccC
Confidence 4543321 24578999999998753 3221 2457789999999986 3433 224668999999999885 343
Q ss_pred hHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCH
Q 011317 252 DEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSD 331 (488)
Q Consensus 252 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 331 (488)
. +..+..++.++.+.+..+.+.... .+. .+++++.|+++++. +++.. .+ .. +++|++|++++| .++.
T Consensus 277 ~--~~~~~~~~~l~~l~~~~n~l~~~~--~~~--~~~~l~~L~ls~n~-l~~l~--~l-~~--l~~L~~L~L~~n-~l~~ 343 (384)
T d2omza2 277 N--ISPLAGLTALTNLELNENQLEDIS--PIS--NLKNLTYLTLYFNN-ISDIS--PV-SS--LTKLQRLFFANN-KVSD 343 (384)
T ss_dssp C--CGGGTTCTTCSEEECCSSCCSCCG--GGG--GCTTCSEEECCSSC-CSCCG--GG-GG--CTTCCEEECCSS-CCCC
T ss_pred C--CCcccccccccccccccccccccc--ccc--hhcccCeEECCCCC-CCCCc--cc-cc--CCCCCEEECCCC-CCCC
Confidence 2 334668899999999998776532 233 48999999999864 55321 12 12 289999999996 6663
Q ss_pred HHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 332 NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 332 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
-. .+. .+++|++|++++| .+++.. .+. .+++|+.|+|++|
T Consensus 344 l~--~l~-~l~~L~~L~l~~N-~l~~l~--~l~---------~l~~L~~L~L~~N 383 (384)
T d2omza2 344 VS--SLA-NLTNINWLSAGHN-QISDLT--PLA---------NLTRITQLGLNDQ 383 (384)
T ss_dssp CG--GGG-GCTTCCEEECCSS-CCCBCG--GGT---------TCTTCSEEECCCE
T ss_pred Ch--hHc-CCCCCCEEECCCC-cCCCCh--hhc---------cCCCCCEeeCCCC
Confidence 21 233 6999999999999 676532 222 7899999999876
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.26 E-value=2.1e-12 Score=117.97 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=96.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+|+.+.+..-....+ ..+++|++|++++|. +.......+..+++|++|++++++ ...
T Consensus 30 ~~~l~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~l~~n~---------~~~i~~~~f~~l~~L~~L~l~~n~------l~~ 93 (305)
T d1xkua_ 30 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKNQ------LKE 93 (305)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSC------CSB
T ss_pred CCCCCEEECcCCcCCCcChhHh-hcccccccccccccc---------ccccchhhhhCCCccCEecccCCc------cCc
Confidence 4678888888776654221122 367888888888874 332223346677888888886442 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. ...+.++.|.+.. ..+.... .........+..+....+..............+++|+.+.++++. +.
T Consensus 94 l~~-------~~~~~l~~L~~~~-n~l~~l~-~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~ 163 (305)
T d1xkua_ 94 LPE-------KMPKTLQELRVHE-NEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-IT 163 (305)
T ss_dssp CCS-------SCCTTCCEEECCS-SCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CC
T ss_pred Ccc-------chhhhhhhhhccc-cchhhhh-hhhhhccccccccccccccccccCCCccccccccccCccccccCC-cc
Confidence 211 1245677777766 2333221 112234555666665543321111111123344556666665532 21
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
..+ ...+++|+.|+++++ .........+..++.++.|++++|.+.......+.. +++|++|++++|
T Consensus 164 ~l~---~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~--l~~L~~L~L~~N 229 (305)
T d1xkua_ 164 TIP---QGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNN 229 (305)
T ss_dssp SCC---SSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSS
T ss_pred ccC---cccCCccCEEECCCC-cCCCCChhHhhccccccccccccccccccccccccc--cccceeeecccc
Confidence 110 113455556665553 222223334445555555555555444322222222 444444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.13 E-value=3.4e-11 Score=104.55 Aligned_cols=164 Identities=23% Similarity=0.195 Sum_probs=87.4
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|+++++ .+.. +..+..+++|+.++++++. +++ +..+..+++|+.+.++++...... .+. ..+.
T Consensus 61 ~l~~L~~L~ls~n-~i~~--~~~l~~l~~l~~l~~~~n~-~~~--i~~l~~l~~L~~l~l~~~~~~~~~--~~~--~~~~ 130 (227)
T d1h6ua2 61 YLNNLIGLELKDN-QITD--LAPLKNLTKITELELSGNP-LKN--VSAIAGLQSIKTLDLTSTQITDVT--PLA--GLSN 130 (227)
T ss_dssp GCTTCCEEECCSS-CCCC--CGGGTTCCSCCEEECCSCC-CSC--CGGGTTCTTCCEEECTTSCCCCCG--GGT--TCTT
T ss_pred cCCCCcEeecCCc-eeec--ccccccccccccccccccc-ccc--cccccccccccccccccccccccc--hhc--cccc
Confidence 3445555555443 2221 1124455666666666542 221 234455666666666665433211 111 2566
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 368 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 368 (488)
+..+.+.++.......+.. + ++|++|+++++ .++ ..++ ..+++|+.|++++| .+++. ..+.
T Consensus 131 ~~~l~~~~~~~~~~~~~~~----~--~~L~~L~l~~n-~~~~~~~l----~~l~~L~~L~Ls~n-~l~~l--~~l~---- 192 (227)
T d1h6ua2 131 LQVLYLDLNQITNISPLAG----L--TNLQYLSIGNA-QVSDLTPL----ANLSKLTTLKADDN-KISDI--SPLA---- 192 (227)
T ss_dssp CCEEECCSSCCCCCGGGGG----C--TTCCEEECCSS-CCCCCGGG----TTCTTCCEEECCSS-CCCCC--GGGG----
T ss_pred hhhhhchhhhhchhhhhcc----c--ccccccccccc-ccccchhh----cccccceecccCCC-ccCCC--hhhc----
Confidence 6666666654222222111 1 67777777774 333 2222 25778888888877 55542 2222
Q ss_pred cCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEec
Q 011317 369 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 369 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~ 411 (488)
.+++|++|++++|+ +++. ..+. .+++|+.|+++
T Consensus 193 -----~l~~L~~L~Ls~N~-lt~i--~~l~--~l~~L~~L~ls 225 (227)
T d1h6ua2 193 -----SLPNLIEVHLKNNQ-ISDV--SPLA--NTSNLFIVTLT 225 (227)
T ss_dssp -----GCTTCCEEECTTSC-CCBC--GGGT--TCTTCCEEEEE
T ss_pred -----CCCCCCEEECcCCc-CCCC--cccc--cCCCCCEEEee
Confidence 67788888888885 7653 2344 37888888875
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.13 E-value=4.9e-11 Score=102.01 Aligned_cols=145 Identities=23% Similarity=0.261 Sum_probs=78.7
Q ss_pred hCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 234 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
..+++|++|+++++ .+++ +..++.+++|+.|++++|.+++.. .+. .+++|+.|++.+|.......+..+
T Consensus 65 ~~l~~L~~L~L~~n-~i~~--l~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~l~~~~~~~~~~l~~l---- 133 (210)
T d1h6ta2 65 QYLPNVTKLFLNGN-KLTD--IKPLANLKNLGWLFLDENKVKDLS--SLK--DLKKLKSLSLEHNGISDINGLVHL---- 133 (210)
T ss_dssp GGCTTCCEEECCSS-CCCC--CGGGTTCTTCCEEECCSSCCCCGG--GGT--TCTTCCEEECTTSCCCCCGGGGGC----
T ss_pred hhCCCCCEEeCCCc-cccC--ccccccCccccccccccccccccc--ccc--cccccccccccccccccccccccc----
Confidence 34556666666654 3332 123445666666666666555322 122 356666666666543222222221
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
+.++.++++++ .+++... ...+++|+.+++++| .+++. ..+. .+++|++|++++|. +++
T Consensus 134 --~~l~~l~~~~n-~l~~~~~---~~~l~~L~~l~l~~n-~l~~i--~~l~---------~l~~L~~L~Ls~N~-i~~-- 192 (210)
T d1h6ta2 134 --PQLESLYLGNN-KITDITV---LSRLTKLDTLSLEDN-QISDI--VPLA---------GLTKLQNLYLSKNH-ISD-- 192 (210)
T ss_dssp --TTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSS-CCCCC--GGGT---------TCTTCCEEECCSSC-CCB--
T ss_pred --ccccccccccc-ccccccc---ccccccccccccccc-ccccc--cccc---------CCCCCCEEECCCCC-CCC--
Confidence 66777777663 4442211 124677888888777 55431 1222 67778888888776 664
Q ss_pred HHHhhccCCCCccEEEecC
Q 011317 394 FRWLKKPYFPRLRWLGVTG 412 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~ 412 (488)
+..+.. +++|++|++++
T Consensus 193 l~~l~~--l~~L~~L~Ls~ 209 (210)
T d1h6ta2 193 LRALAG--LKNLDVLELFS 209 (210)
T ss_dssp CGGGTT--CTTCSEEEEEE
T ss_pred ChhhcC--CCCCCEEEccC
Confidence 334443 77888887764
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.7e-12 Score=115.89 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 314 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 314 (488)
.++.++.+.+.....+.......+..+++|+.|+++++.+.......+.. .++|+.+++.++. ++...-..+ ..
T Consensus 78 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~l~l~~N~-l~~i~~~~f-~~-- 151 (284)
T d1ozna_ 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNA-LQALPDDTF-RD-- 151 (284)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT-TT--
T ss_pred ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccch--hcccchhhhcccc-ccccChhHh-cc--
Confidence 34455555544433444333444555566666666655443322222222 4556666665532 321100011 11
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 394 (488)
.++|++|+++++ .++.....++ ..+++|+.+.+++| .++......+. .+++|++|++++|. ++....
T Consensus 152 ~~~L~~L~l~~N-~l~~l~~~~f-~~l~~L~~l~l~~N-~l~~i~~~~f~---------~l~~L~~L~l~~N~-i~~~~~ 218 (284)
T d1ozna_ 152 LGNLTHLFLHGN-RISSVPERAF-RGLHSLDRLLLHQN-RVAHVHPHAFR---------DLGRLMTLYLFANN-LSALPT 218 (284)
T ss_dssp CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCCCH
T ss_pred ccchhhcccccC-cccccchhhh-ccccccchhhhhhc-cccccChhHhh---------hhhhcccccccccc-cccccc
Confidence 156777777763 4542111111 15778888888877 55432222222 67788888888887 665555
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011317 395 RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+.. +++|++|++++++
T Consensus 219 ~~~~~--~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 219 EALAP--LRALQYLRLNDNP 236 (284)
T ss_dssp HHHTT--CTTCCEEECCSSC
T ss_pred ccccc--ccccCEEEecCCC
Confidence 55554 7888888888765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.10 E-value=9.2e-11 Score=101.75 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=31.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIR 135 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 135 (488)
+.+|+.|++.++.+.+ +..+ ..+++|++|++++|. ++. +..+..+++|++++++.
T Consensus 40 l~~L~~L~l~~~~i~~--l~~l-~~l~~L~~L~ls~n~---------i~~--~~~l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTT--IEGV-QYLNNLIGLELKDNQ---------ITD--LAPLKNLTKITELELSG 94 (227)
T ss_dssp HHTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSSC---------CCC--CGGGTTCCSCCEEECCS
T ss_pred cCCcCEEECCCCCCCc--chhH-hcCCCCcEeecCCce---------eec--ccccccccccccccccc
Confidence 4566777776665554 2222 357777777777663 222 22255666666666653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.2e-11 Score=108.65 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=102.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+.+++|+|++|.++.-....+ ..+++|++|+++++. +.......+..+..++++.+..... ...
T Consensus 31 p~~~~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~ls~n~---------l~~i~~~~~~~~~~~~~l~~~~~~~-----~~~ 95 (284)
T d1ozna_ 31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNV---------LARIDAAAFTGLALLEQLDLSDNAQ-----LRS 95 (284)
T ss_dssp CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSCTT-----CCC
T ss_pred CCCCCEEECcCCcCCCCCHHHh-hcccccccccccccc---------ccccccccccccccccccccccccc-----ccc
Confidence 3567888888776654322222 367788888888764 3332333344566666666532211 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.... ...+++|+.|+++++ .+.... ......+++|+.++++++.. +..+ ....+.+++|++|+++++ .+.
T Consensus 96 l~~~~----~~~l~~L~~L~l~~n-~~~~~~-~~~~~~~~~L~~l~l~~N~l-~~i~-~~~f~~~~~L~~L~l~~N-~l~ 166 (284)
T d1ozna_ 96 VDPAT----FHGLGRLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNAL-QALP-DDTFRDLGNLTHLFLHGN-RIS 166 (284)
T ss_dssp CCTTT----TTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSS-CCC
T ss_pred ccchh----hcccccCCEEecCCc-cccccc-ccccchhcccchhhhccccc-cccC-hhHhccccchhhcccccC-ccc
Confidence 11111 134667777777764 332211 11123456677777765432 1111 012234456666666653 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
......+..+++|+.++++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|++++
T Consensus 167 ~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~--~~~L~~L~l~~ 234 (284)
T d1ozna_ 167 SVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP--LRALQYLRLND 234 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT--CTTCCEEECCS
T ss_pred ccchhhhccccccchhhhhhc-cccccChhHhhhhhhccccccccccccccccccccc--ccccCEEEecC
Confidence 222223445566666666653 344444445555666666666666555444443433 55666666655
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=8.5e-11 Score=99.59 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=78.6
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
+..+++|++|+++++ .+++. ..++.+++|++|++++|.+.... .+. .++.|+.|++++|.......+..
T Consensus 58 l~~l~nL~~L~Ls~N-~l~~~--~~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~~~~~~~~~~~~---- 126 (199)
T d2omxa2 58 VEYLNNLTQINFSNN-QLTDI--TPLKNLTKLVDILMNNNQIADIT--PLA--NLTNLTGLTLFNNQITDIDPLKN---- 126 (199)
T ss_dssp GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGT--TCTTCSEEECCSSCCCCCGGGTT----
T ss_pred cccCCCcCcCccccc-cccCc--ccccCCccccccccccccccccc--ccc--cccccccccccccccccccccch----
Confidence 345666666666664 33332 23556666666666666444322 122 36677777776654433222222
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
+++|+.|+++++ .++... .+ ..+++|+.|++.+| .+++. ..+. .+++|++|++++|+ +++
T Consensus 127 --l~~L~~L~l~~n-~l~~~~--~l-~~~~~L~~L~l~~n-~l~~l--~~l~---------~l~~L~~L~ls~N~-i~~- 186 (199)
T d2omxa2 127 --LTNLNRLELSSN-TISDIS--AL-SGLTSLQQLNFSSN-QVTDL--KPLA---------NLTTLERLDISSNK-VSD- 186 (199)
T ss_dssp --CTTCSEEECCSS-CCCCCG--GG-TTCTTCSEEECCSS-CCCCC--GGGT---------TCTTCCEEECCSSC-CCC-
T ss_pred --hhhhHHhhhhhh-hhcccc--cc-cccccccccccccc-cccCC--cccc---------CCCCCCEEECCCCC-CCC-
Confidence 267777777774 343211 11 25677888888777 55442 1122 67778888888876 665
Q ss_pred HHHHhhccCCCCccEE
Q 011317 393 AFRWLKKPYFPRLRWL 408 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L 408 (488)
+..+.. +++|+.|
T Consensus 187 -i~~l~~--L~~L~~L 199 (199)
T d2omxa2 187 -ISVLAK--LTNLESL 199 (199)
T ss_dssp -CGGGGG--CTTCSEE
T ss_pred -CccccC--CCCCCcC
Confidence 233443 6777765
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.06 E-value=5.5e-11 Score=108.31 Aligned_cols=226 Identities=16% Similarity=0.127 Sum_probs=142.5
Q ss_pred HHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCC
Q 011317 26 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL 105 (488)
Q Consensus 26 ~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 105 (488)
..+|++++.|++++..-.....- ....+++|++|+++.+.+.......+ ..+++|++|++++|.
T Consensus 27 ~~l~~~l~~L~Ls~N~i~~l~~~--------------~f~~l~~L~~L~l~~n~~~~i~~~~f-~~l~~L~~L~l~~n~- 90 (305)
T d1xkua_ 27 KDLPPDTALLDLQNNKITEIKDG--------------DFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQ- 90 (305)
T ss_dssp CSCCTTCCEEECCSSCCCCBCTT--------------TTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC-
T ss_pred CCCCCCCCEEECcCCcCCCcChh--------------Hhhccccccccccccccccccchhhh-hCCCccCEecccCCc-
Confidence 34667888888875421111100 03447899999999776664322223 478999999999984
Q ss_pred CCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhC
Q 011317 106 IEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSC 185 (488)
Q Consensus 106 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
++... -...+.++.|.+..+. ...+... .......+..+................+..+
T Consensus 91 --------l~~l~---~~~~~~l~~L~~~~n~------l~~l~~~----~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l 149 (305)
T d1xkua_ 91 --------LKELP---EKMPKTLQELRVHENE------ITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149 (305)
T ss_dssp --------CSBCC---SSCCTTCCEEECCSSC------CCBBCHH----HHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred --------cCcCc---cchhhhhhhhhccccc------hhhhhhh----hhhccccccccccccccccccCCCccccccc
Confidence 32211 1234678888875422 2333322 2245677788887764322221122234568
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc
Q 011317 186 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265 (488)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 265 (488)
++|+.++++++.. ...+ ...+++|++|+++++. ........+..++.++.|+++++ .+.......+..+++|+
T Consensus 150 ~~L~~l~l~~n~l-~~l~----~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~ 222 (305)
T d1xkua_ 150 KKLSYIRIADTNI-TTIP----QGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLR 222 (305)
T ss_dssp TTCCEEECCSSCC-CSCC----SSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCC
T ss_pred cccCccccccCCc-cccC----cccCCccCEEECCCCc-CCCCChhHhhccccccccccccc-cccccccccccccccce
Confidence 8999999987653 2111 1246799999998853 33233334668899999999985 66666666778899999
Q ss_pred EEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 266 ~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
+|++++|.++... ..+. .+++|+.|+++++
T Consensus 223 ~L~L~~N~L~~lp-~~l~--~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 223 ELHLNNNKLVKVP-GGLA--DHKYIQVVYLHNN 252 (305)
T ss_dssp EEECCSSCCSSCC-TTTT--TCSSCCEEECCSS
T ss_pred eeecccccccccc-cccc--cccCCCEEECCCC
Confidence 9999999776432 1233 3788888888875
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.98 E-value=2.2e-10 Score=96.93 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=106.6
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 314 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 314 (488)
.++++++|+++++ .+.+ +..+..+++|++|++++|.+++.. .+. .+++|+.|+++++....-.++. .
T Consensus 38 ~l~~l~~L~l~~~-~i~~--l~~l~~l~nL~~L~Ls~N~l~~~~--~l~--~l~~L~~L~l~~n~~~~~~~l~------~ 104 (199)
T d2omxa2 38 DLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLTDIT--PLK--NLTKLVDILMNNNQIADITPLA------N 104 (199)
T ss_dssp HHTTCCEEECTTS-CCCC--CTTGGGCTTCCEEECCSSCCCCCG--GGT--TCTTCCEEECCSSCCCCCGGGT------T
T ss_pred HhcCCCEEECCCC-CCCC--ccccccCCCcCcCccccccccCcc--ccc--CCcccccccccccccccccccc------c
Confidence 3578889999886 4443 345678999999999999887643 233 4899999999987643333222 2
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 394 (488)
+++|+.|+++++......++. .+++|+.|++++| .+... ..+. .+++|+.|++.+|. +++ +
T Consensus 105 l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~n-~l~~~--~~l~---------~~~~L~~L~l~~n~-l~~--l 165 (199)
T d2omxa2 105 LTNLTGLTLFNNQITDIDPLK----NLTNLNRLELSSN-TISDI--SALS---------GLTSLQQLNFSSNQ-VTD--L 165 (199)
T ss_dssp CTTCSEEECCSSCCCCCGGGT----TCTTCSEEECCSS-CCCCC--GGGT---------TCTTCSEEECCSSC-CCC--C
T ss_pred ccccccccccccccccccccc----hhhhhHHhhhhhh-hhccc--cccc---------cccccccccccccc-ccC--C
Confidence 289999999997554433333 6899999999998 55432 2222 78999999999997 665 3
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011317 395 RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+. .+++|++|++++|.
T Consensus 166 ~~l~--~l~~L~~L~ls~N~ 183 (199)
T d2omxa2 166 KPLA--NLTTLERLDISSNK 183 (199)
T ss_dssp GGGT--TCTTCCEEECCSSC
T ss_pred cccc--CCCCCCEEECCCCC
Confidence 3454 48999999999996
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.96 E-value=5.8e-10 Score=95.15 Aligned_cols=143 Identities=29% Similarity=0.341 Sum_probs=69.1
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|+++++ .+.. +..++.+++|+.|+++++ .+++ +..+..+++|+.|+++++.+.... .+. .++.
T Consensus 66 ~l~~L~~L~L~~n-~i~~--l~~~~~l~~L~~L~l~~n-~i~~--l~~l~~l~~L~~L~l~~~~~~~~~--~l~--~l~~ 135 (210)
T d1h6ta2 66 YLPNVTKLFLNGN-KLTD--IKPLANLKNLGWLFLDEN-KVKD--LSSLKDLKKLKSLSLEHNGISDIN--GLV--HLPQ 135 (210)
T ss_dssp GCTTCCEEECCSS-CCCC--CGGGTTCTTCCEEECCSS-CCCC--GGGGTTCTTCCEEECTTSCCCCCG--GGG--GCTT
T ss_pred hCCCCCEEeCCCc-cccC--ccccccCccccccccccc-cccc--cccccccccccccccccccccccc--ccc--cccc
Confidence 3445555555543 2221 112335556666666553 3332 223445566666666665443211 122 2556
Q ss_pred ccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccc
Q 011317 290 LVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 368 (488)
Q Consensus 290 L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 368 (488)
++.+.+.++. +++ ..+. .+++|+.++++++ .+++- ..+ ..+++|+.|++++| .+++. ..+.
T Consensus 136 l~~l~~~~n~-l~~~~~~~------~l~~L~~l~l~~n-~l~~i--~~l-~~l~~L~~L~Ls~N-~i~~l--~~l~---- 197 (210)
T d1h6ta2 136 LESLYLGNNK-ITDITVLS------RLTKLDTLSLEDN-QISDI--VPL-AGLTKLQNLYLSKN-HISDL--RALA---- 197 (210)
T ss_dssp CCEEECCSSC-CCCCGGGG------GCTTCSEEECCSS-CCCCC--GGG-TTCTTCCEEECCSS-CCCBC--GGGT----
T ss_pred cccccccccc-cccccccc------ccccccccccccc-ccccc--ccc-cCCCCCCEEECCCC-CCCCC--hhhc----
Confidence 6666665543 332 1111 1156666666663 44321 111 24677777777777 55542 2222
Q ss_pred cCCCCCCCCccEEeccC
Q 011317 369 DDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 369 ~~~~~~~~~L~~L~l~~ 385 (488)
.+++|++|+|++
T Consensus 198 -----~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 198 -----GLKNLDVLELFS 209 (210)
T ss_dssp -----TCTTCSEEEEEE
T ss_pred -----CCCCCCEEEccC
Confidence 567777777653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=4e-11 Score=106.79 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=91.3
Q ss_pred CCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccE
Q 011317 213 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 292 (488)
Q Consensus 213 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~ 292 (488)
++++|++++ +.+.......+..+++|++|+++++ .++. +..++.+++|++|++++|.+..... .+ . .+++|+.
T Consensus 32 ~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~--l~~~~~l~~L~~L~Ls~N~l~~~~~-~~-~-~l~~L~~ 104 (266)
T d1p9ag_ 32 DTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTK--LQVDGTLPVLGTLDLSHNQLQSLPL-LG-Q-TLPALTV 104 (266)
T ss_dssp TCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCE--EECCSCCTTCCEEECCSSCCSSCCC-CT-T-TCTTCCE
T ss_pred CCCEEECcC-CcCCCcCHHHhhccccccccccccc-cccc--ccccccccccccccccccccccccc-cc-c-ccccccc
Confidence 444444444 2333222223445666666666664 3432 2233456667777776665543211 11 1 3666777
Q ss_pred EecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccC
Q 011317 293 LSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDD 370 (488)
Q Consensus 293 L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 370 (488)
|+++++.... ...+. .++++++|.++++ .++..... ....+++|+.|++++| +++......+.
T Consensus 105 L~l~~~~~~~~~~~~~~------~l~~l~~L~l~~n-~l~~l~~~-~~~~l~~l~~l~l~~N-~l~~~~~~~~~------ 169 (266)
T d1p9ag_ 105 LDVSFNRLTSLPLGALR------GLGELQELYLKGN-ELKTLPPG-LLTPTPKLEKLSLANN-NLTELPAGLLN------ 169 (266)
T ss_dssp EECCSSCCCCCCSSTTT------TCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCSCCCTTTTT------
T ss_pred ccccccccceeeccccc------ccccccccccccc-ccceeccc-cccccccchhcccccc-cccccCccccc------
Confidence 7776654221 11111 1267777777763 44311111 1124678888888887 55432222222
Q ss_pred CCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 371 DRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 371 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++... ..+. ..++|+.|++++|+
T Consensus 170 ---~l~~L~~L~Ls~N~-L~~lp-~~~~--~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 170 ---GLENLDTLLLQENS-LYTIP-KGFF--GSHLLPFAFLHGNP 206 (266)
T ss_dssp ---TCTTCCEEECCSSC-CCCCC-TTTT--TTCCCSEEECCSCC
T ss_pred ---cccccceeecccCC-CcccC-hhHC--CCCCCCEEEecCCC
Confidence 57788888888887 66421 1222 26788888888876
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.1e-10 Score=103.86 Aligned_cols=191 Identities=18% Similarity=0.138 Sum_probs=124.9
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCC
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL 316 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 316 (488)
+++++|+|+++ .++......+.++++|++|+|++|.++.... +. .+++|+.|+++++. ++.. .... ..++
T Consensus 31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~--~l~~L~~L~Ls~N~-l~~~--~~~~--~~l~ 100 (266)
T d1p9ag_ 31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG--TLPVLGTLDLSHNQ-LQSL--PLLG--QTLP 100 (266)
T ss_dssp TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS--CCTTCCEEECCSSC-CSSC--CCCT--TTCT
T ss_pred cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc--cc--cccccccccccccc-cccc--cccc--cccc
Confidence 58999999995 6776666778899999999999998875321 22 48999999999864 4421 0111 1238
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHH
Q 011317 317 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 396 (488)
Q Consensus 317 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 396 (488)
+|+.|+++++. +...... ....+++++.|.+.+| .++...... .. .+++|+.|++++|. ++......
T Consensus 101 ~L~~L~l~~~~-~~~~~~~-~~~~l~~l~~L~l~~n-~l~~l~~~~-~~--------~l~~l~~l~l~~N~-l~~~~~~~ 167 (266)
T d1p9ag_ 101 ALTVLDVSFNR-LTSLPLG-ALRGLGELQELYLKGN-ELKTLPPGL-LT--------PTPKLEKLSLANNN-LTELPAGL 167 (266)
T ss_dssp TCCEEECCSSC-CCCCCSS-TTTTCTTCCEEECTTS-CCCCCCTTT-TT--------TCTTCCEEECTTSC-CSCCCTTT
T ss_pred ccccccccccc-cceeecc-cccccccccccccccc-ccceecccc-cc--------ccccchhccccccc-ccccCccc
Confidence 99999999853 3311111 1125789999999998 544221111 11 67899999999997 77655444
Q ss_pred hhccCCCCccEEEecCCCCHHHHHHHHhhCCCc-eeecccccccCCccCCCCCeeeecCcchHHHHHHHhc
Q 011317 397 LKKPYFPRLRWLGVTGSVNRDILDALARSRPFL-NVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLME 466 (488)
Q Consensus 397 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (488)
+.. +++|++|++++|.-...-..+. ..+.+ .+...++++.++ -++.++.+|+.+
T Consensus 168 ~~~--l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~Cd-------------C~~~~l~~wl~~ 222 (266)
T d1p9ag_ 168 LNG--LENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCN-------------CEILYFRRWLQD 222 (266)
T ss_dssp TTT--CTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCS-------------GGGHHHHHHHHH
T ss_pred ccc--ccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCCCC-------------cchHHHHHHHHh
Confidence 543 8999999999996322111222 23333 455666654443 235677788753
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.87 E-value=6.1e-12 Score=115.24 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCcEEEeecCccChh--HHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccc
Q 011317 69 GIQKLCLSVDYITDA--MVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRS 136 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 136 (488)
+++.|+|+++.+... ....+ ..+++|++|+|+++. .++......++++++|++|+++.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N--------~l~g~iP~~i~~L~~L~~L~Ls~N 111 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGIN--------NLVGPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEET--------TEESCCCGGGGGCTTCSEEEEEEE
T ss_pred EEEEEECCCCCCCCCCCCChHH-hcCcccccccccccc--------ccccccccccccccccchhhhccc
Confidence 577777776544321 11222 257777777776532 132222334666667777776543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.85 E-value=1.2e-12 Score=120.10 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=111.9
Q ss_pred HhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCC
Q 011317 157 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 236 (488)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 236 (488)
..+++|++|+|++++.+... ++..+..+++|++|+++++..... .......+++|+.++++.+... ......+..+
T Consensus 73 ~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~--~~~~~~~~~~L~~l~l~~N~~~-~~~p~~l~~l 148 (313)
T d1ogqa_ 73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGA--IPDFLSQIKTLVTLDFSYNALS-GTLPPSISSL 148 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEE--CCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGC
T ss_pred hcCccccccccccccccccc-cccccccccccchhhhcccccccc--ccccccchhhhccccccccccc-ccCchhhccC
Confidence 34677777777654443321 111134567777777776542110 0112335567777777664211 1111235567
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCc-cEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQL-KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
++|+.++++++ .+.......+..++.+ +.+.++++.++......+.. + .+..+++..+..... +.... ..+
T Consensus 149 ~~L~~l~l~~n-~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~--l-~~~~l~l~~~~~~~~--~~~~~--~~~ 220 (313)
T d1ogqa_ 149 PNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--L-NLAFVDLSRNMLEGD--ASVLF--GSD 220 (313)
T ss_dssp TTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--C-CCSEEECCSSEEEEC--CGGGC--CTT
T ss_pred cccceeecccc-ccccccccccccccccccccccccccccccccccccc--c-ccccccccccccccc--ccccc--ccc
Confidence 77777777764 3332223344445444 66777776555433322222 2 334566655432111 00111 112
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++++.+++.++ .++.. +..+ ..+++|+.|++++| ++++.-...+. .+++|++|++++|. +++. +.
T Consensus 221 ~~l~~l~~~~~-~l~~~-~~~~-~~~~~L~~L~Ls~N-~l~g~iP~~l~---------~L~~L~~L~Ls~N~-l~g~-iP 285 (313)
T d1ogqa_ 221 KNTQKIHLAKN-SLAFD-LGKV-GLSKNLNGLDLRNN-RIYGTLPQGLT---------QLKFLHSLNVSFNN-LCGE-IP 285 (313)
T ss_dssp SCCSEEECCSS-EECCB-GGGC-CCCTTCCEEECCSS-CCEECCCGGGG---------GCTTCCEEECCSSE-EEEE-CC
T ss_pred ccccccccccc-ccccc-cccc-ccccccccccCccC-eecccCChHHh---------CCCCCCEEECcCCc-cccc-CC
Confidence 67777777764 33311 1111 14567777777777 44432112222 56777777777775 4421 11
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.+. .+++|+.+++.+|.
T Consensus 286 ~~~--~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 286 QGG--NLQRFDVSAYANNK 302 (313)
T ss_dssp CST--TGGGSCGGGTCSSS
T ss_pred Ccc--cCCCCCHHHhCCCc
Confidence 221 24566666666553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.77 E-value=4.8e-08 Score=79.40 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=83.2
Q ss_pred HHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC-CCCCeeEEecCCCCCCCHHHHHHHH---hcCCCCCeEeecCCCC
Q 011317 279 VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPL 354 (488)
Q Consensus 279 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~ 354 (488)
+..+.. ..++|++|++++++.++++++..++... ..++|++|++++| .+++.+...++ ...+.|+.|++++| .
T Consensus 7 l~~l~~-n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-~ 83 (167)
T d1pgva_ 7 INRLRE-DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-F 83 (167)
T ss_dssp HHHHHT-TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHh-CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-h
Confidence 333444 4677777777776667776665544321 1267888888874 67766654443 24577888888888 7
Q ss_pred CCHHHHHHHHcccccCCCCCCCCccEEeccCCC--CCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 355 IGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG--GITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 355 l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
+++.++..++.++. .+++|++|+++++. .+.+.+...+.. ...++|+.|+++.+.
T Consensus 84 i~~~g~~~l~~aL~-----~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 84 LTPELLARLLRSTL-----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp CCHHHHHHHHHHTT-----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cchHHHHHHHHHHH-----hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 88888888777665 67788888887763 355555433332 126788888887654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.69 E-value=2.3e-07 Score=75.23 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=80.4
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccC-CCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHH
Q 011317 286 VITSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVI 361 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 361 (488)
..+.|++|+++++..++++++..++... ..++|++|++++| .+++.+...++. ..+.++.+++++| .+++.++.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~ 92 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 92 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc-cccchhHH
Confidence 4677777777776667777766655421 1267888888874 777766655432 4577888888777 78888877
Q ss_pred HHHcccccCCCCCCCCccEEeccCCC-CCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 362 ALASMLVDDDRWYGSSIRLLDLYNCG-GITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 362 ~l~~~~~~~~~~~~~~L~~L~l~~~~-~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
.++..+. .+++|+.++|+.+. .+++.+...+.. ..+++|++|++..+.
T Consensus 93 ~l~~~l~-----~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 93 ALVEALQ-----SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHGGG-----GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHH-----hCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 7776555 67778776665432 377766554432 137788888887654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.63 E-value=1.5e-08 Score=93.54 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=76.5
Q ss_pred HHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEec
Q 011317 21 FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDL 100 (488)
Q Consensus 21 ~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L 100 (488)
..++...++.+++.|++++..- ..+ +...++|++|+++++.+..- .....+|++|++
T Consensus 29 ~~~l~~c~~~~l~~LdLs~~~L---~~l---------------p~~~~~L~~L~Ls~N~l~~l-----p~~~~~L~~L~l 85 (353)
T d1jl5a_ 29 VSRLRDCLDRQAHELELNNLGL---SSL---------------PELPPHLESLVASCNSLTEL-----PELPQSLKSLLV 85 (353)
T ss_dssp HHHHHHHHHHTCSEEECTTSCC---SCC---------------CSCCTTCSEEECCSSCCSSC-----CCCCTTCCEEEC
T ss_pred HHHHHHHHHcCCCEEEeCCCCC---CCC---------------CCCCCCCCEEECCCCCCccc-----ccchhhhhhhhh
Confidence 3344444455677888775421 111 23356888888888777631 124578888888
Q ss_pred cCCCCCCCccccccChHHHHhhhcC-CCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHH
Q 011317 101 RDAPLIEPRITFDLTNSGLQQINQH-GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 179 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 179 (488)
.++. ++. +..+ +.|++|+++.+. ...+.. ...+++|+.|+++++ .+...
T Consensus 86 ~~n~---------l~~-----l~~lp~~L~~L~L~~n~------l~~lp~------~~~l~~L~~L~l~~~-~~~~~--- 135 (353)
T d1jl5a_ 86 DNNN---------LKA-----LSDLPPLLEYLGVSNNQ------LEKLPE------LQNSSFLKIIDVDNN-SLKKL--- 135 (353)
T ss_dssp CSSC---------CSC-----CCSCCTTCCEEECCSSC------CSSCCC------CTTCTTCCEEECCSS-CCSCC---
T ss_pred hhcc---------cch-----hhhhccccccccccccc------cccccc------hhhhccceeeccccc-ccccc---
Confidence 8874 221 2223 358888886442 222221 134678888888774 33211
Q ss_pred HHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 011317 180 TILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWC 222 (488)
Q Consensus 180 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 222 (488)
....+.+..+.+..+...... ....++.++.+.+.++
T Consensus 136 --~~~~~~l~~l~~~~~~~~~~~----~l~~l~~l~~L~l~~n 172 (353)
T d1jl5a_ 136 --PDLPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNN 172 (353)
T ss_dssp --CCCCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSS
T ss_pred --ccccccccchhhccccccccc----cccccccceecccccc
Confidence 112345666666543322111 1124456666766653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9e-09 Score=83.31 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=43.9
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCCh-HHHHhhcCCCCccEEEeCCCccchhH---HHHHHhh
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVG---VSYLRLT 285 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~---~~~l~~~ 285 (488)
.+++|++|+++++ .+...+...+..+++|+.|+++++ .+.+ ..+..+..+++|++|++++|.++... ...+.
T Consensus 61 ~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~-- 136 (162)
T d1a9na_ 61 LLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY-- 136 (162)
T ss_dssp CCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH--
T ss_pred cCcchhhhhcccc-cccCCCccccccccccccceeccc-cccccccccccccccccchhhcCCCccccccchHHHHHH--
Confidence 3455555555553 232211112235677777777775 3333 23455667777777777777655432 12223
Q ss_pred cCCCccEEec
Q 011317 286 VITSLVKLSL 295 (488)
Q Consensus 286 ~~~~L~~L~l 295 (488)
.+|+|+.|+.
T Consensus 137 ~lp~L~~LD~ 146 (162)
T d1a9na_ 137 KVPQVRVLDF 146 (162)
T ss_dssp HCTTCSEETT
T ss_pred HCCCcCeeCC
Confidence 3677777664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.58 E-value=2.6e-07 Score=74.96 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
+.+..+.... ++|++|+|++++.+++.++..++. ..+.|+.|++++| .+++.+...++.++. ..+.|++
T Consensus 5 ~~l~~l~~n~--~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~-----~n~~L~~ 76 (167)
T d1pgva_ 5 SCINRLREDD--TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIE-----TSPSLRV 76 (167)
T ss_dssp HHHHHHHTTC--SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHH-----HCSSCCE
T ss_pred HHHHHHHhCC--CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhh-----hcccccc
Confidence 4455665555 899999999877899888776644 4578999999999 899999888877655 6789999
Q ss_pred EeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 381 LDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 381 L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
|++++|. +++.++..+.. ...++|++|+++++.
T Consensus 77 L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 77 LNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp EECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred eeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 9999997 99988876654 247899999998763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=9.6e-10 Score=96.17 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=93.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+++++.+..-....+ ..+++|++|++++|... .......+..+++++++.+..+.....
T Consensus 28 ~~~l~~L~Ls~n~i~~l~~~~f-~~l~~L~~L~ls~n~~~--------~~i~~~~f~~l~~l~~l~~~~~n~l~~----- 93 (242)
T d1xwdc1 28 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVL--------EVIEADVFSNLPKLHEIRIEKANNLLY----- 93 (242)
T ss_dssp CSCCSEEEEESCCCCEECTTTT-TTCTTCCEEEEESCTTC--------CEECSSSEESCTTCCEEEEECCTTCCE-----
T ss_pred CCCCCEEECcCCcCCccChhHh-hccchhhhhhhcccccc--------ceeeccccccccccccccccccccccc-----
Confidence 4588999999877764222222 46889999999988421 111222355678888888754322111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceE---EecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKL---RVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
+... .+..+++|+.|+++++ .+...... ..+..++.+ ...+. .+.......+......++.|++.++
T Consensus 94 ~~~~----~~~~l~~L~~l~l~~~-~l~~~~~~---~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n- 163 (242)
T d1xwdc1 94 INPE----AFQNLPNLQYLLISNT-GIKHLPDV---HKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKN- 163 (242)
T ss_dssp ECTT----SEECCTTCCEEEEESC-CCCSCCCC---TTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cccc----cccccccccccccchh-hhcccccc---ccccccccccccccccc-ccccccccccccccccceeeecccc-
Confidence 1111 1145788899988884 44432111 123334433 33322 1211111111112236666776652
Q ss_pred CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccch
Q 011317 224 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 276 (488)
Q Consensus 224 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 276 (488)
.+..... .....++++.+....++.++......+..+++|++|+|++|.++.
T Consensus 164 ~l~~i~~-~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~ 215 (242)
T d1xwdc1 164 GIQEIHN-CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215 (242)
T ss_dssp CCCEECT-TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred ccccccc-ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence 3322111 112345555554444345554444455667777777777776553
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.1e-08 Score=82.76 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
..++++|+|+++.++.- ..+...+++|+.|+|++|. ++. +..+..+++|++|+++++. ...
T Consensus 17 ~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~---------i~~--l~~~~~l~~L~~L~ls~N~------i~~ 77 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE---------IRK--LDGFPLLRRLKTLLVNNNR------ICR 77 (162)
T ss_dssp TTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC---------CCE--ECCCCCCSSCCEEECCSSC------CCE
T ss_pred cCcCcEEECCCCCCCcc--CccccccccCCEEECCCCC---------CCc--cCCcccCcchhhhhccccc------ccC
Confidence 44688888888776652 2333467888888888874 332 2235667788888886543 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHH-HHHHHHHhCCCCceEEecCCCCCCHHHH-HHHHhcCCCCCEEEe
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDT-GFKTILHSCSNLYKLRVSHGTQLTDLVF-HDISATSLSLTHVCL 219 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l 219 (488)
+... +...+++|++|+++++ .+... .+.. +..+++|++|+++++........ ..+...+|+|+.|+.
T Consensus 78 l~~~----~~~~l~~L~~L~L~~N-~i~~~~~l~~-l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 78 IGEG----LDQALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp ECSC----HHHHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred CCcc----ccccccccccceeccc-cccccccccc-cccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 2221 2244777777777773 44432 1222 34567777777776542111111 123345566666553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.46 E-value=8.3e-09 Score=86.63 Aligned_cols=106 Identities=22% Similarity=0.142 Sum_probs=48.0
Q ss_pred hcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHH
Q 011317 258 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILT 336 (488)
Q Consensus 258 l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 336 (488)
+..+++|++|++++|.+++.. .+.. +++|+.|++++|. ++. ..+.... ++|++|+++++ .++.- ..
T Consensus 44 l~~L~~L~~L~Ls~n~I~~i~--~l~~--l~~L~~L~Ls~N~-i~~i~~~~~~~-----~~L~~L~l~~N-~i~~l--~~ 110 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEKIS--SLSG--MENLRILSLGRNL-IKKIENLDAVA-----DTLEELWISYN-QIASL--SG 110 (198)
T ss_dssp HHHTTTCCEEECSEEEESCCC--CHHH--HTTCCEEECCEEE-ECSCSSHHHHH-----HHCCEEECSEE-ECCCH--HH
T ss_pred HhcccccceeECcccCCCCcc--cccC--CccccChhhcccc-ccccccccccc-----ccccccccccc-ccccc--cc
Confidence 334455555555555444321 1222 4555555555542 221 1111111 45666666552 44421 11
Q ss_pred HHhcCCCCCeEeecCCCCCCHHH-HHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 337 LATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 337 l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+. .+++|+.|++++| .+++.. +..+. .+++|+.|++++|+
T Consensus 111 ~~-~l~~L~~L~L~~N-~i~~~~~~~~l~---------~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 111 IE-KLVNLRVLYMSNN-KITNWGEIDKLA---------ALDKLEDLLLAGNP 151 (198)
T ss_dssp HH-HHHHSSEEEESEE-ECCCHHHHHHHT---------TTTTCSEEEECSSH
T ss_pred cc-ccccccccccccc-hhcccccccccc---------CCCccceeecCCCc
Confidence 11 3455666666665 444332 23333 45666666666654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.45 E-value=2.9e-06 Score=68.49 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=61.0
Q ss_pred CCCCcCEEeccCCCCCChHHHHhh----cCCCCccEEEeCCCccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHH
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISA 308 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~ 308 (488)
..++|++|+++++..+++.++..+ ...++|++|++++|.+++.+...++. ...++++.+++.+| .++++++..
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhHHH
Confidence 345555555554444444443332 24555666666666555554443322 13566666666664 366555554
Q ss_pred Hhcc-CCCCCeeEEecCCC-CCCCHHHHHHHHh---cCCCCCeEeecCC
Q 011317 309 LFDG-TSKLQLQELDLSNL-PHLSDNGILTLAT---CRVPISELRVRQC 352 (488)
Q Consensus 309 l~~~-~~~~~L~~L~l~~~-~~l~~~~~~~l~~---~~~~L~~L~l~~~ 352 (488)
++.. ...++|+.++|..+ +.+.+.+...++. .+++|+.|++..+
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 4322 11156666666543 3566665544432 5677777777655
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.5e-09 Score=94.98 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=18.9
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
+++++|++++ +.++... ...+..+++|++|+++++.
T Consensus 29 ~~l~~L~Ls~-n~i~~l~-~~~f~~l~~L~~L~ls~n~ 64 (242)
T d1xwdc1 29 RNAIELRFVL-TKLRVIQ-KGAFSGFGDLEKIEISQND 64 (242)
T ss_dssp SCCSEEEEES-CCCCEEC-TTTTTTCTTCCEEEEESCT
T ss_pred CCCCEEECcC-CcCCccC-hhHhhccchhhhhhhcccc
Confidence 3577777776 3444221 1112446666666666553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.31 E-value=2.6e-08 Score=83.56 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=70.5
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFD 311 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~ 311 (488)
+..+++|++|+++++ .+.+. ..+..+++|+.|++++|.++.... +.. .+++|+.|+++++. ++ -.++..+
T Consensus 44 l~~L~~L~~L~Ls~n-~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~~--~~~-~~~~L~~L~l~~N~-i~~l~~~~~l-- 114 (198)
T d1m9la_ 44 LSTLKACKHLALSTN-NIEKI--SSLSGMENLRILSLGRNLIKKIEN--LDA-VADTLEELWISYNQ-IASLSGIEKL-- 114 (198)
T ss_dssp HHHTTTCCEEECSEE-EESCC--CCHHHHTTCCEEECCEEEECSCSS--HHH-HHHHCCEEECSEEE-CCCHHHHHHH--
T ss_pred HhcccccceeECccc-CCCCc--ccccCCccccChhhcccccccccc--ccc-cccccccccccccc-cccccccccc--
Confidence 456788888888874 44432 346677888999998887664221 111 24578899998864 55 3444444
Q ss_pred cCCCCCeeEEecCCCCCCCHH-HHHHHHhcCCCCCeEeecCC
Q 011317 312 GTSKLQLQELDLSNLPHLSDN-GILTLATCRVPISELRVRQC 352 (488)
Q Consensus 312 ~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~ 352 (488)
++|+.|++++ +.++.. .+..+. .+++|+.|++++|
T Consensus 115 ----~~L~~L~L~~-N~i~~~~~~~~l~-~l~~L~~L~L~~N 150 (198)
T d1m9la_ 115 ----VNLRVLYMSN-NKITNWGEIDKLA-ALDKLEDLLLAGN 150 (198)
T ss_dssp ----HHSSEEEESE-EECCCHHHHHHHT-TTTTCSEEEECSS
T ss_pred ----cccccccccc-chhcccccccccc-CCCccceeecCCC
Confidence 7899999988 466643 334443 5899999999988
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=8e-08 Score=73.63 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=9.0
Q ss_pred hcCCCCccEEEeCCCccc
Q 011317 258 ISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 258 l~~~~~L~~L~l~~~~i~ 275 (488)
+..+++|++|++++|.++
T Consensus 16 l~~l~~L~~L~ls~N~l~ 33 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLR 33 (124)
T ss_dssp GGGGTTCCEEECCSSCCC
T ss_pred cccCCCCCEEECCCCccC
Confidence 344455555555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=4.7e-07 Score=69.20 Aligned_cols=86 Identities=23% Similarity=0.228 Sum_probs=42.1
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChH-HHHhhcCC
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDE-ALRAISSL 261 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~ 261 (488)
..+++|++|+++++. ++..+ .....+++|+.|+++++ .+... ..+..+++|+.|+++++ .+... .+..+..+
T Consensus 17 ~~l~~L~~L~ls~N~-l~~lp--~~~~~l~~L~~L~l~~N-~i~~l--~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~ 89 (124)
T d1dcea3 17 EQLLLVTHLDLSHNR-LRALP--PALAALRCLEVLQASDN-ALENV--DGVANLPRLQELLLCNN-RLQQSAAIQPLVSC 89 (124)
T ss_dssp GGGTTCCEEECCSSC-CCCCC--GGGGGCTTCCEEECCSS-CCCCC--GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred ccCCCCCEEECCCCc-cCcch--hhhhhhhcccccccccc-ccccc--CccccccccCeEECCCC-ccCCCCCchhhcCC
Confidence 345555555555443 22111 11234455555555552 33321 23456666666666664 33322 23445566
Q ss_pred CCccEEEeCCCccc
Q 011317 262 PQLKILLLDGSDIS 275 (488)
Q Consensus 262 ~~L~~L~l~~~~i~ 275 (488)
++|+.|++++|.+.
T Consensus 90 ~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 90 PRLVLLNLQGNSLC 103 (124)
T ss_dssp TTCCEEECTTSGGG
T ss_pred CCCCEEECCCCcCC
Confidence 66666666666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.19 E-value=1.4e-06 Score=79.82 Aligned_cols=180 Identities=17% Similarity=0.145 Sum_probs=95.5
Q ss_pred hhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCC
Q 011317 29 SEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEP 108 (488)
Q Consensus 29 p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 108 (488)
|++|+.|++++..- ..+ +...++|+.|++..+.++.- ..-.++|++|++++|.
T Consensus 57 ~~~L~~L~Ls~N~l---~~l---------------p~~~~~L~~L~l~~n~l~~l-----~~lp~~L~~L~L~~n~---- 109 (353)
T d1jl5a_ 57 PPHLESLVASCNSL---TEL---------------PELPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQ---- 109 (353)
T ss_dssp CTTCSEEECCSSCC---SSC---------------CCCCTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSC----
T ss_pred CCCCCEEECCCCCC---ccc---------------ccchhhhhhhhhhhcccchh-----hhhccccccccccccc----
Confidence 45888888874321 111 23357899999997766531 1123579999999984
Q ss_pred ccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCC
Q 011317 109 RITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL 188 (488)
Q Consensus 109 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 188 (488)
++. ++.++.+++|++|+++.+.. .... ...+.+..+.+..+....... ...++.+
T Consensus 110 -----l~~--lp~~~~l~~L~~L~l~~~~~------~~~~--------~~~~~l~~l~~~~~~~~~~~~----l~~l~~l 164 (353)
T d1jl5a_ 110 -----LEK--LPELQNSSFLKIIDVDNNSL------KKLP--------DLPPSLEFIAAGNNQLEELPE----LQNLPFL 164 (353)
T ss_dssp -----CSS--CCCCTTCTTCCEEECCSSCC------SCCC--------CCCTTCCEEECCSSCCSSCCC----CTTCTTC
T ss_pred -----ccc--ccchhhhccceeeccccccc------cccc--------cccccccchhhcccccccccc----ccccccc
Confidence 332 23356788999999964321 1111 124567777776643322111 1346778
Q ss_pred ceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEE
Q 011317 189 YKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILL 268 (488)
Q Consensus 189 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 268 (488)
+.+.+.++.... +.......+.+...+. .+.. ......++.|+.+.++++.... . ....+++..+.
T Consensus 165 ~~L~l~~n~~~~------~~~~~~~~~~l~~~~~-~~~~--~~~~~~l~~L~~l~l~~n~~~~-~----~~~~~~l~~~~ 230 (353)
T d1jl5a_ 165 TAIYADNNSLKK------LPDLPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNNLLKT-L----PDLPPSLEALN 230 (353)
T ss_dssp CEEECCSSCCSS------CCCCCTTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSSCCSS-C----CSCCTTCCEEE
T ss_pred eecccccccccc------cccccccccccccccc-cccc--cccccccccccccccccccccc-c----ccccccccccc
Confidence 888887654211 1111223444444442 2111 1123356778888877642211 0 11234556666
Q ss_pred eCCCcc
Q 011317 269 LDGSDI 274 (488)
Q Consensus 269 l~~~~i 274 (488)
+..+.+
T Consensus 231 ~~~~~~ 236 (353)
T d1jl5a_ 231 VRDNYL 236 (353)
T ss_dssp CCSSCC
T ss_pred cccccc
Confidence 655543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.06 E-value=4.9e-07 Score=75.27 Aligned_cols=110 Identities=12% Similarity=0.126 Sum_probs=62.5
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+|+.|.++..........+++|++|++++|. +.......+..+++|++|++++++ ...
T Consensus 28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~---------i~~~~~~~~~~~~~L~~L~Ls~N~------l~~ 92 (192)
T d1w8aa_ 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---------LTGIEPNAFEGASHIQELQLGENK------IKE 92 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSCC------CCE
T ss_pred CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc---------cccccccccccccccceeeecccc------ccc
Confidence 45788888887776532222222467788888888774 333333445567778888876542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
+.... +..+++|++|+|++ +.+... ....+..+++|++|+++++.
T Consensus 93 l~~~~----F~~l~~L~~L~L~~-N~l~~i-~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 93 ISNKM----FLGLHQLKTLNLYD-NQISCV-MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECSSS----STTCTTCCEEECCS-SCCCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred cCHHH----HhCCCcccccccCC-cccccc-CHHHhcCCcccccccccccc
Confidence 22221 23467777777777 355433 11223456667777776554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.00 E-value=3.2e-07 Score=76.43 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=17.6
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|++|+++++ .+.......|.++++|++|+|++|.++
T Consensus 76 ~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~ 115 (192)
T d1w8aa_ 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred cccccceeeeccc-cccccCHHHHhCCCcccccccCCcccc
Confidence 3444444444442 333333333444444555555444443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=4.7e-05 Score=60.28 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=14.9
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 273 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 273 (488)
.+++|+.|+++++ .+......++..+++|++|+|++|.
T Consensus 54 ~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~ 91 (156)
T d2ifga3 54 GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (156)
T ss_dssp SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred cccccCcceeecc-ccCCcccccccccccccceeccCCC
Confidence 3444444444432 2333333333344444444444443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00016 Score=57.07 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=44.6
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
+..+++|++|++.+.+.++......|..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~--l~~L~~L~Ls~N 90 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF--TPRLSRLNLSFN 90 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS--CSCCCEEECCSS
T ss_pred ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccc--cccccceeccCC
Confidence 4466788888887655576666667778888888888888766544333333 777777777764
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.00035 Score=55.42 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=6.9
Q ss_pred cCCCCCeEeecCC
Q 011317 340 CRVPISELRVRQC 352 (488)
Q Consensus 340 ~~~~L~~L~l~~~ 352 (488)
.+++|+.|++++|
T Consensus 89 ~l~~L~~L~Ls~N 101 (162)
T d1koha1 89 KAPNLKILNLSGN 101 (162)
T ss_dssp HSTTCCCCCCTTS
T ss_pred hCCcccccccccC
Confidence 3555555555555
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.00051 Score=54.44 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=60.5
Q ss_pred HHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecC
Q 011317 335 LTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTG 412 (488)
Q Consensus 335 ~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~ 412 (488)
..+...+++|+.|++++| ++++. ++..... .+++|+.|++++|. |++ ..+..+ . ..+|+.|++.+
T Consensus 58 ~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~--------~l~~L~~L~Ls~N~-i~~l~~l~~l-~--~~~L~~L~L~~ 124 (162)
T d1koha1 58 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQ--------KAPNLKILNLSGNE-LKSERELDKI-K--GLKLEELWLDG 124 (162)
T ss_dssp HHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHH--------HSTTCCCCCCTTSC-CCCGGGHHHH-T--TCCCSSCCCTT
T ss_pred HHHHHhCCCCCEeeCCCc-cccCCchhHHHHh--------hCCcccccccccCc-cccchhhhhh-h--ccccceeecCC
Confidence 344557999999999999 66653 2233333 68999999999998 766 333333 2 56899999999
Q ss_pred CCC-------HHHHHHHHhhCCCceeec
Q 011317 413 SVN-------RDILDALARSRPFLNVAC 433 (488)
Q Consensus 413 ~~~-------~~~~~~~~~~~~~l~~~~ 433 (488)
|+. ..-...+...+|.++...
T Consensus 125 Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 125 NSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp STTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred CCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 873 234556677889887654
|