Citrus Sinensis ID: 011336

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
ccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEcccccEEEEEcccEEEEEEcccEEEEEccccccccccccccEEEcEEEEcccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEccEEEcccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccEEEcccccccccEEEEccccccEEEEEccccEEEEEccccccccccccccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccccEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccEEEc
cccccEEEEEEEccEEEEEEEcccccccccccccccccccccccccccccEEEEEccccEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccEEHHHcccEEEEEEcccEEEEEEccEEEEEEcccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHHcccEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccHHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEHHccccEEEEEc
madryrlfsieelpSHLIFEILTSGRLSAVDLAHLELtsktfggshglypqkFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHssdivetsagnmqitTGRYHTLLisnssvfscgsslcgvlghgpettqcvsftrinfpsaaHVVQVSASENHAAFVlqsgqvftcgdnssfccghrdtnrpifrPRLVEalkgvpckqvtaglnFTGFLTIRGHvhtcgsnthgqlghgdtldrptpksiapleevgsvvqiaagpSYMLAVTGNgvvysfgsgsnfclghgeqhdelqPRAIQTFRRKGIHVVRVSAGDEHVVALdssgyvytwgkgycgalghgdeidktlpeplsslksHLAVQVCARKRKTfvlvdtgsvygfgwmgfgslgfpdrgvsdkvlrpRILDSLRAHHVSQISTGLYHTVvvtdrgrlfgfgdneraqlghdtlrgclepTEIFIQEMEEDTGLA
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVrvsagdehvvaLDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAhhvsqistglyhtvVVTDRGRLFGFGDneraqlghdtlrgcLEPTEIFIQEMEEDTGLA
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
****YRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL***************PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI**********
*****RL*SIEELPSHLIFEILTSGRLSAVDLAHLE***********LYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVL*************ETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
***RYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
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MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query488 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.696 0.772 0.32 2e-37
Q15034 1050 Probable E3 ubiquitin-pro yes no 0.557 0.259 0.318 3e-30
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.545 0.251 0.329 2e-29
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.639 0.064 0.292 2e-29
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.545 0.251 0.329 2e-29
O95714 4834 E3 ubiquitin-protein liga no no 0.639 0.064 0.292 3e-29
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.545 0.251 0.329 6e-29
Q15751 4861 Probable E3 ubiquitin-pro no no 0.659 0.066 0.303 1e-28
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.694 0.069 0.291 2e-27
F2Z461 1003 E3 ISG15--protein ligase no no 0.520 0.253 0.311 7e-26
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)

Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 20  ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 78

Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 79  TVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 196

Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 197 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 254

Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413
            LGHGD  D  +P  L +L +    Q+    R T  L   G +YG+GW  FG +G  +  
Sbjct: 255 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 314

Query: 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
                ++ R  D  +   V Q+S G  HT+ VT+R  +F +G     QLG
Sbjct: 315 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 361
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
255575340497 Ran GTPase binding protein, putative [Ri 0.997 0.979 0.837 0.0
224114984478 predicted protein [Populus trichocarpa] 0.979 1.0 0.828 0.0
225461391492 PREDICTED: probable E3 ubiquitin-protein 0.995 0.987 0.812 0.0
224128193492 predicted protein [Populus trichocarpa] 0.997 0.989 0.806 0.0
147820281511 hypothetical protein VITISV_023540 [Viti 0.991 0.947 0.809 0.0
356549747485 PREDICTED: probable E3 ubiquitin-protein 0.985 0.991 0.803 0.0
255646519485 unknown [Glycine max] 0.985 0.991 0.797 0.0
356544020485 PREDICTED: probable E3 ubiquitin-protein 0.985 0.991 0.797 0.0
449446943491 PREDICTED: probable E3 ubiquitin-protein 0.993 0.987 0.764 0.0
18400769488 regulator of chromosome condensation rep 0.979 0.979 0.757 0.0
>gi|255575340|ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223532017|gb|EEF33828.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/487 (83%), Positives = 441/487 (90%)

Query: 1   MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
           MAD+YRL SI+ELPSHLI EIL +GRLSA DL  LELTSKTFGGSHGLYP KF+SLVD A
Sbjct: 1   MADKYRLVSIDELPSHLILEILMTGRLSATDLVCLELTSKTFGGSHGLYPHKFKSLVDFA 60

Query: 61  ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
           A QLCA HS+Y GM  N Q ELL+RC GNWKRVLRFL +VE SS +VETSAGNMQITTGR
Sbjct: 61  AFQLCASHSVYTGMLWNAQKELLDRCGGNWKRVLRFLLAVEESSGMVETSAGNMQITTGR 120

Query: 121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
           YHTLLISNSSV+SCGSSLCGVLGHGPETTQCVSF+RI FPS A VVQVSAS NHAA++L+
Sbjct: 121 YHTLLISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHNHAAYILE 180

Query: 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
           SG+VFTCGDNSSFCCGH+DT+RPIFRPR VEALKGVPCKQV AGLNFT FLT  GHV++C
Sbjct: 181 SGEVFTCGDNSSFCCGHQDTSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTRTGHVYSC 240

Query: 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
           G+NTHGQLGHGDTLDRPTPK I   E +GSV QIAAGPSY+LAVT +GVVYSFGSGSNFC
Sbjct: 241 GTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVVYSFGSGSNFC 300

Query: 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360
           LGHGEQH+E  PRAIQTFRRK +HVVRVSAGDEHVVALDSSG+VYTWGKGYCGALGHGDE
Sbjct: 301 LGHGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFVYTWGKGYCGALGHGDE 360

Query: 361 IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLR 420
           IDKTLPEPL+SLKSHLAVQVCARKRKTFVLVD G V+GFGWMGFGSLGFPDRGVSDKV+R
Sbjct: 361 IDKTLPEPLNSLKSHLAVQVCARKRKTFVLVDGGCVFGFGWMGFGSLGFPDRGVSDKVMR 420

Query: 421 PRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE 480
           PRILDSLRAH VSQISTGLYHTV VT +G++FGFGDNERAQLGHDTLRGCLEPTEIF+QE
Sbjct: 421 PRILDSLRAHRVSQISTGLYHTVAVTSQGQVFGFGDNERAQLGHDTLRGCLEPTEIFLQE 480

Query: 481 MEEDTGL 487
              DTG+
Sbjct: 481 FGHDTGI 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114984|ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461391|ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|302143037|emb|CBI20332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128193|ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820281|emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549747|ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646519|gb|ACU23737.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544020|ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446943|ref|XP_004141229.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18400769|ref|NP_566512.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|42572455|ref|NP_974323.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|7021728|gb|AAF35409.1| unknown protein [Arabidopsis thaliana] gi|15795108|dbj|BAB02372.1| unnamed protein product [Arabidopsis thaliana] gi|23297250|gb|AAN12924.1| unknown protein [Arabidopsis thaliana] gi|332642152|gb|AEE75673.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|332642153|gb|AEE75674.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.979 0.979 0.757 7.3e-201
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.911 0.836 0.350 8.9e-54
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.696 0.772 0.32 2.6e-40
TAIR|locus:2165770 1073 AT5G42140 "AT5G42140" [Arabido 0.620 0.282 0.311 7.2e-35
TAIR|locus:2025277 1103 PRAF1 "AT1G76950" [Arabidopsis 0.622 0.275 0.310 1.5e-33
FB|FBgn0035207 1058 CG9153 [Drosophila melanogaste 0.721 0.332 0.303 4.7e-33
UNIPROTKB|F1NBC5 1050 HERC3 "Uncharacterized protein 0.620 0.288 0.321 7.5e-33
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.639 0.064 0.289 6.8e-31
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.639 0.064 0.289 6.8e-31
UNIPROTKB|E1C514 1050 HERC3 "Uncharacterized protein 0.620 0.288 0.321 1.6e-32
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1944 (689.4 bits), Expect = 7.3e-201, P = 7.3e-201
 Identities = 362/478 (75%), Positives = 403/478 (84%)

Query:     1 MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
             MADR  L S E+LPSHLI E+LTSGRLSAVDL  LELTSK FGGSHG YP KFRSL D A
Sbjct:     1 MADRNCLISFEDLPSHLILEVLTSGRLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYA 60

Query:    61 ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
             ASQLC++H +Y GM    Q EL   C GNWKR+  FLQSVE SSD+VETS G MQI TG+
Sbjct:    61 ASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGK 120

Query:   121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
             YHTLLI+NS V+SCG SL GVL HG ETTQCV+FT I FP  A V QVSA++NH+AFVLQ
Sbjct:   121 YHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180

Query:   181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
             SGQV TCGDNSS CCGH DT+RPIFRP+LVEALKG PCKQV AGL+FT FL+  GH +TC
Sbjct:   181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTC 240

Query:   241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
             GSNTHGQLGHGDTLDRP PK +  L+ +G VVQIAAGPSY+LAVT +G VYSFGSGSNFC
Sbjct:   241 GSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFC 300

Query:   301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360
             LGHGEQ DELQPR IQ F+RKGIH++RVSAGDEH VALDS+G VYTWGKGYCGALGHGDE
Sbjct:   301 LGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDE 360

Query:   361 IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLR 420
              DK  P+ L +L + LAVQVCARKRKTFVLV+ G +YGFGWMGFGSLGFPDRGVSDKVLR
Sbjct:   361 NDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLR 420

Query:   421 PRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI 478
             PR+L+ L+ H VSQ+STGLYHT+VVT RGR+FGFGDNERAQLGHD+LRGCLEPTEIF+
Sbjct:   421 PRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPTEIFL 478
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0035207 CG9153 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBC5 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C514 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-22
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-20
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-19
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-18
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
pfam0064648 pfam00646, F-box, F-box domain 0.002
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.004
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  110 bits (276), Expect = 4e-26
 Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 49/385 (12%)

Query: 116 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF--PSAAHVVQVSASEN 173
           I    +  LL+  +SV+S GS+    LG G + T+        F     A +++++   N
Sbjct: 57  INKHTH--LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN 114

Query: 174 HAAFVLQSGQVFTCGDNSSFCCG---HRDTN----------------RPIFRPRLVEALK 214
           H+  +   G +++ GDN     G   H+D                   P   P    A  
Sbjct: 115 HSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKS 174

Query: 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG--SVV 272
            +   ++  G   +  LT  G V++ G+   G+LG G   +           +V   ++V
Sbjct: 175 HLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIV 234

Query: 273 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG--------IH 324
           Q+AAG  +++A+T  G VY +GS          Q  +L     +  +            +
Sbjct: 235 QLAAGADHLIALTNEGKVYGWGSN---------QKGQLGRPTSERLKLVVLVGDPFAIRN 285

Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG----DEIDKTLPEPLSSLKSHLAVQV 380
           +  V+ G +H +ALD  G +Y WG    G LG G         T P     L       +
Sbjct: 286 IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSI 345

Query: 381 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY 440
            A +  + +L   G++Y FG    G LG  +    D            A  + Q++ G +
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITID---VSTPTKLSVAIKLEQVACGTH 402

Query: 441 HTVVVTDRGRLFGFGDNERAQLGHD 465
           H +  TD G ++ +G  E   LG+ 
Sbjct: 403 HNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 488
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.9
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.28
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.14
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.11
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.08
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.95
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.1
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.5
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.16
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 95.56
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.44
KOG2997366 consensus F-box protein FBX9 [General function pre 94.92
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.75
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.1
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 90.68
PF13013109 F-box-like_2: F-box-like domain 88.18
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 87.84
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 85.3
PHA02713557 hypothetical protein; Provisional 84.3
KOG0315311 consensus G-protein beta subunit-like protein (con 83.69
PHA03098534 kelch-like protein; Provisional 82.65
KOG0315311 consensus G-protein beta subunit-like protein (con 82.24
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 80.03
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2e-53  Score=405.74  Aligned_cols=352  Identities=26%  Similarity=0.378  Sum_probs=291.7

Q ss_pred             cCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcc
Q 011336          119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCC  195 (488)
Q Consensus       119 G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~--~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gql  195 (488)
                      -..|...+ .-..||+||+|...|||.+........|+..++.  +...|++++||+.|+++|++||+||+||.|..|+|
T Consensus        57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L  136 (476)
T COG5184          57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL  136 (476)
T ss_pred             cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence            34555566 8899999999999999999887766678877776  44689999999999999999999999999999999


Q ss_pred             cCCC---------------CCCceeCCEEecc----CCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCC
Q 011336          196 GHRD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR  256 (488)
Q Consensus       196 G~~~---------------~~~~~~~p~~v~~----~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~  256 (488)
                      |...               ......+|..|+.    ....+|++++||++++++|+++|+||+||....+.++.+...+.
T Consensus       137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s  216 (476)
T COG5184         137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS  216 (476)
T ss_pred             ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence            9776               2234677888876    23447999999999999999999999999998888888844433


Q ss_pred             ------CCceeecCCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEe
Q 011336          257 ------PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA  330 (488)
Q Consensus       257 ------~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~  330 (488)
                            .+|..+.    ...|+++++|.+|.++|+++|++|.||+|..||||.........+..+..+. .-..|.+|+|
T Consensus       217 ~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vac  291 (476)
T COG5184         217 QKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVAC  291 (476)
T ss_pred             ccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhccc
Confidence                  3444443    2589999999999999999999999999999999998877766665554332 1224788999


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCCCCCCCCC----CCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCC
Q 011336          331 GDEHVVALDSSGYVYTWGKGYCGALGHGDE----IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGS  406 (488)
Q Consensus       331 g~~h~~~lt~~G~vy~wG~n~~gqlG~~~~----~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gq  406 (488)
                      |.+|++||+++|++|+||.|.+||||.++.    .....|.....+.+..|.++++|..|+++|..+|.||+||+++.+|
T Consensus       292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~q  371 (476)
T COG5184         292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQ  371 (476)
T ss_pred             CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccc
Confidence            999999999999999999999999999822    1233566666677778999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceecceEcCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCC-CCCcccceEEEc
Q 011336          407 LGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGCLEPTEIFI  478 (488)
Q Consensus       407 LG~~~~~~~~~~~~P~~v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~-~~~~~~p~~v~~  478 (488)
                      ||..... ...+..|.++...  .++.+++||..|+++.+++|+||+||+|++||||.+. ..++..|+.|+.
T Consensus       372 lg~~~~~-~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~  441 (476)
T COG5184         372 LGIQEEI-TIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ  441 (476)
T ss_pred             ccCcccc-eeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence            9998743 3344556655533  3799999999999999999999999999999999975 567778887774

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-38
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-29
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-16
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-38
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-29
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-16
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-38
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-29
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-16
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 8e-38
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-29
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-16
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-28
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 1e-21
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 5e-15
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 8e-13
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 6e-15
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 7e-13
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 5e-13
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-05
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 2e-10
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 1e-07
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 9   ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 68  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 413
            LGHGD  D  +P  L +L +    Q+    R T  L   G +YG+GW  FG +G  +  
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 414 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 463
                ++ R  D  +   V Q+S G  HT+ VT+R  +F +G     QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-108
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-86
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-85
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-73
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-107
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-85
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-75
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-56
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-53
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-39
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-87
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-77
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-74
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-82
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-72
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-68
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-14
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-69
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-67
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-44
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-22
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-06
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-32
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-22
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  325 bits (835), Expect = e-108
 Identities = 96/365 (26%), Positives = 159/365 (43%), Gaps = 9/365 (2%)

Query: 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
              +     L    + +++  G +  G LG   E  +    T     +    VQ+   E 
Sbjct: 5   HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGI-EGAKVKVPTPCEALATLRPVQLIGGEQ 63

Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK--QVTAGLNFTGFL 231
               V   G+++  G  +    G   T   +  P L+E+++ V  K   V +G      L
Sbjct: 64  TLFAVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 291
           +  G V++ G    G+LGHG+      P+ I  L  +  VV +AAG ++   VT  G +Y
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLY 181

Query: 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351
           ++G G    LGH +  D+L+P+ ++  +   +  +   +GD   + L     V++WG G 
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241

Query: 352 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 411
            G LG G      +P  + SL     V+V    + +  L  +G+VY +G   +  LG   
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301

Query: 412 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCL 471
               D V RPR +  L+   V  I+TG  H V  T+ G ++ +GDN+  QLG  T     
Sbjct: 302 ---DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ 358

Query: 472 EPTEI 476
            P  +
Sbjct: 359 RPRLV 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.09
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.99
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.85
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 97.6
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 96.88
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.25
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.01
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 95.72
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.69
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.81
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 94.08
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.82
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.99
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.5
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.33
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 90.92
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 90.78
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 88.41
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 87.74
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 83.21
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 83.08
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 82.63
4g56_B357 MGC81050 protein; protein arginine methyltransfera 82.37
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 81.89
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 81.89
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 81.52
2xyi_A430 Probable histone-binding protein CAF1; transcripti 80.88
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 80.8
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 80.4
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=3.1e-75  Score=588.96  Aligned_cols=368  Identities=30%  Similarity=0.475  Sum_probs=335.4

Q ss_pred             ccccCCCceEEEecCceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCC-c
Q 011336          106 IVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-Q  183 (488)
Q Consensus       106 ~~~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G-~  183 (488)
                      +.....+|++|+||..|+++| ++|+||+||+|.+||||.+...+ ...|++++.....+|++|+||..|+++|+++| +
T Consensus        11 v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~   89 (406)
T 4d9s_A           11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME   89 (406)
T ss_dssp             ----CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred             CCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence            334556799999999999999 99999999999999999998776 34566665555568999999999999999986 9


Q ss_pred             EEEEeCCCCCcccCCCCCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeec
Q 011336          184 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA  263 (488)
Q Consensus       184 vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~  263 (488)
                      ||+||.|.+||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.++......|.++.
T Consensus        90 v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  168 (406)
T 4d9s_A           90 VYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ  168 (406)
T ss_dssp             EEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred             EEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence            99999999999999887 56788999999999999999999999999999999999999999999999998888999998


Q ss_pred             CCCCCCCEEEEEeCCCeEEEEEcCCcEEEecCCCCCccCCCCCCCCcCceeeeecccCCeeEEEEEeCCCeEEEEeCCCc
Q 011336          264 PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY  343 (488)
Q Consensus       264 ~~~~~~~i~~i~~G~~~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~  343 (488)
                      .+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.  ..+|++|+||.+|+++|+++|+
T Consensus       169 ~~~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~  245 (406)
T 4d9s_A          169 AFEG-IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGA  245 (406)
T ss_dssp             GGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCC
T ss_pred             ccCC-CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCC
Confidence            7754 589999999999999999999999999999999999988888898887653  4589999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeecCCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceE
Q 011336          344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI  423 (488)
Q Consensus       344 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~  423 (488)
                      ||+||.|.+||||+++......|+++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.+.   ......|++
T Consensus       246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~  322 (406)
T 4d9s_A          246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN---NLDQCSPVQ  322 (406)
T ss_dssp             EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---SSCEEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC---CCCCccCEE
Confidence            99999999999999999889999999999999999999999999999999999999999999999987   455678999


Q ss_pred             cCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEcccc
Q 011336          424 LDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEM  481 (488)
Q Consensus       424 v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~  481 (488)
                      ++.+...+|++|+||.+|++||+++|+||+||.|.+||||+++..+...|+.|+....
T Consensus       323 v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~  380 (406)
T 4d9s_A          323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV  380 (406)
T ss_dssp             ECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCS
T ss_pred             EeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecC
Confidence            9877778999999999999999999999999999999999999999999998876543
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 488
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-33
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-28
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-07
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-33
 Identities = 83/381 (21%), Positives = 133/381 (34%), Gaps = 24/381 (6%)

Query: 119 GRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAF 177
              H    +    V + G    G LG G    +      ++ P    VVQ  A   H   
Sbjct: 4   KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVC 61

Query: 178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV 237
           + +SGQV++ G N     G   +          +        QV+AG + T  LT  G V
Sbjct: 62  LSKSGQVYSFGCNDEGALGRDTSVEGSEMVP-GKVELQEKVVQVSAGDSHTAALTDDGRV 120

Query: 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297
              GS        G             ++    VV++A+G  +++ +T +G +Y+ G G 
Sbjct: 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 180

Query: 298 NFCLGHGEQHDELQPRAIQTFR--------------RKGIHVVRVSAGDEHVVALDSSGY 343
              LG   +    +       R              R  +       G     A+   G+
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHL--AVQVCARKRKTFVLVDTGSVYGFGW 401
           VY +G      LG        +P+ L+S K+     V     +  T  +   G  Y  G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 402 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 461
             +G LG  +      +  P ++  L A  VS ++ G      VT  GR+F +G     Q
Sbjct: 301 AEYGRLGLGEGAEEKSI--PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 356

Query: 462 LGHDTLRGCLEPTEIFIQEME 482
           LG         P E+  +++E
Sbjct: 357 LGTGQDEDAWSPVEMMGKQLE 377
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.2
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.06
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.57
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 97.14
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.94
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.97
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 94.07
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 89.61
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 84.92
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 81.5
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 80.33
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-60  Score=473.83  Aligned_cols=353  Identities=23%  Similarity=0.292  Sum_probs=288.9

Q ss_pred             ceeEee-eCCcEEEEeCCCCCCCCCCCCCceeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCC
Q 011336          121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD  199 (488)
Q Consensus       121 ~h~~~l-~~g~vy~wG~n~~GqLG~g~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~  199 (488)
                      .|++++ .+|+||+||.|.+||||.+........|++++++  .+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCC--CCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            699999 9999999999999999999776655566666554  5799999999999999999999999999999999987


Q ss_pred             CCCceeCCEEeccCCCCCeEEEEecCCeeEEEEeCCcEEEEECCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC
Q 011336          200 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS  279 (488)
Q Consensus       200 ~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~  279 (488)
                      .. ....|.+.......+|++|+||..|+++++++|+||+||.+..++++.........+..........+|++|+||..
T Consensus        84 ~~-~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~  162 (401)
T d1a12a_          84 SV-EGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGND  162 (401)
T ss_dssp             CS-TTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSS
T ss_pred             cc-ccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEeccc
Confidence            63 33444444445567899999999999999999999999987665544333222222211111122258999999999


Q ss_pred             eEEEEEcCCcEEEecCCCCCccCCCCCCCC-----------cCceeeeecc---cCCeeEEEEEeCCCeEEEEeCCCcEE
Q 011336          280 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDE-----------LQPRAIQTFR---RKGIHVVRVSAGDEHVVALDSSGYVY  345 (488)
Q Consensus       280 ~~~~lt~~G~v~~wG~n~~gqlG~~~~~~~-----------~~p~~i~~~~---~~~~~i~~i~~g~~h~~~lt~~G~vy  345 (488)
                      |+++++++|++|+||.|.++|||.......           ..|..+....   ....+|.+|+||..|+++|+++|+||
T Consensus       163 ~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~  242 (401)
T d1a12a_         163 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY  242 (401)
T ss_dssp             EEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEE
T ss_pred             ceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEe
Confidence            999999999999999999999998644221           1233332211   12357999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCcccceeecCCC--CCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecceE
Q 011336          346 TWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI  423 (488)
Q Consensus       346 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~~t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~  423 (488)
                      .||.|.++++|.........+..+..+.  ...++.+++|..|+++++++|+||+||.|.+||||.+..  ......|++
T Consensus       243 ~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~--~~~~~~P~~  320 (401)
T d1a12a_         243 GFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG--AEEKSIPTL  320 (401)
T ss_dssp             EEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT--CCCEEEEEE
T ss_pred             eecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcc--cccccCCEE
Confidence            9999999999999888777777766544  346999999999999999999999999999999999864  345567888


Q ss_pred             cCccCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccceEEEccc
Q 011336          424 LDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE  480 (488)
Q Consensus       424 v~~~~~~~v~~v~~G~~ht~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~  480 (488)
                      ++.+.  +|++|+||.+|++||++||+||+||.|.+||||+|+..++..|++|..+.
T Consensus       321 i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~  375 (401)
T d1a12a_         321 ISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ  375 (401)
T ss_dssp             CCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred             cCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccC
Confidence            88664  79999999999999999999999999999999999999999999986544
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure