Citrus Sinensis ID: 011338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWIIETE
Secondary Structure (PSIPRED)
cHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHHcccHHHHHHHHHHcccccEEcccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHEcccccccHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHcHHHHHHHHHHHccHHHHccccccccHHHHHHHccHHHHHHHHHHccHHHHHHHHHHccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccEHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEc
Coil and Loop (DISEMBL)
mvrylyretpiaeldpdkgtngamLLTSCIIDDIFDIPLDLLQRYRKLAyaqdndgdtAIDMlaqkpsafpsgtqlAFWKKWIYSFIYIRSAyasnnishgdierphqgpaehKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREistqgesqfekVGIKKVVFIAVKHGIVEFITEIMKHYpdiiwcyddynrhiFSYATLQRQEKIFNLIYTMGakknsvatnwdkahNNILhqaaflapssqldrVSGAALQMQRELQWFKEVESIVQPKYKEMVNLhyktpralfsdQHKKLVEQGEKWMKETAESCTVVAALIATIMFSaaftvpggydeytgiplylhrNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYstygpgifnkpkkWWIIETE
Flexible Loop (DISEMBL)
mvrylyretpiaeldpdkgtNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTqgesqfekvgiKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKtpralfsdqHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYStygpgifnkpkkwwiiete
Low Complexity Region (SEG)
MVRYLYRETPIAELDPDKGTNGAMLLTSCiiddifdipldllQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWIIETE
Disordered region (IsUnstruct)
****LYR***I*******GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH************HKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWII***
Disordered Region (DISOPRED)
MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGE***EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWII***
Disordered Region (DISEMBL)
MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWIIETE
Disordered Region (DISPRO)
MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWIIETE
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKKWWIIETE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.516	0.427	0.232	2e-07
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.545	0.5	0.224	0.0003

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 23/275 (8%)

Query: 159 VCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYAT 218
           + R I  +G++          + +AVK    E +  ++   P I+   D         AT
Sbjct: 258 LARRIDKKGQT---------ALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVAT 308

Query: 219 LQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVS-----GAALQM 273
            +++ +I  L+ ++    ++ A    + H   L  A  L  S +   +        AL+ 
Sbjct: 309 RKKRAEIVELLLSL---PDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRA 365

Query: 274 QRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQH---KKLVEQGEKWMKETAESCTV 330
               Q   E+ S V  + K  V++  +  +    + H   K+L +   + +     S TV
Sbjct: 366 NELNQPRDELRSTV-TQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTV 424

Query: 331 VAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGIL 390
           VA L AT+ F+A FTVPGG D   G  + + R SF +F + +A++LF+S   V++ + ++
Sbjct: 425 VAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLV 483

Query: 391 TSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTF 425
                 E  +  +  +L+  L+S+  S+A +  ++
Sbjct: 484 RGETKAEKRVVEVINKLMW-LASMCTSVAFLASSY 517

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 126/294 (42%), Gaps = 28/294 (9%)

Query: 174 VGIKK-----VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNL 228
           VG+K       + +AVK   +E + EI++    I+   D         AT + + +I +L
Sbjct: 189 VGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSL 248

Query: 229 IYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV-------SGAALQMQRELQWFK 281
           + T  A + +   N  +   ++  +  +   + +++          G  +  + E +  K
Sbjct: 249 LLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALK 308

Query: 282 EVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFS 341
              S ++ + +  +  + KT R + S   K+L +   + ++ T  S TVVA L A+I F 
Sbjct: 309 RAVSDIKHEVQSQLLQNEKTNRRV-SGIAKELRKLHREAVQNTTNSITVVAVLFASIAFL 367

Query: 342 AAFTVPGGY---DEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEED 398
           A F +PG Y     + G      R  F VF + +A SLF S   V++ + ++      + 
Sbjct: 368 AIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQK 427

Query: 399 FLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVI---ILKARIAWVSFPIILLAS 449
            + S+  +L+          A    TFG  L I   ++    +W++  I LL +
Sbjct: 428 KVVSVVNKLM---------WAACACTFGAFLAIAFAVVGKGNSWMAITITLLGA 472

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
255552378	580	ankyrin repeat-containing protein, putat	0.936	0.787	0.659	0.0
224131182	543	predicted protein [Populus trichocarpa]	0.856	0.769	0.612	1e-165
224093352	548	predicted protein [Populus trichocarpa]	0.860	0.766	0.618	1e-159
9293890	653	unnamed protein product [Arabidopsis tha	0.969	0.724	0.549	1e-156
147827121	667	hypothetical protein VITISV_044401 [Viti	0.985	0.721	0.525	1e-145
296088578	718	unnamed protein product [Vitis vinifera]	0.950	0.646	0.537	1e-143
359477037	766	PREDICTED: uncharacterized protein LOC10	0.930	0.592	0.537	1e-140
297834778	605	predicted protein [Arabidopsis lyrata su	0.850	0.685	0.503	1e-130
296087932	655	unnamed protein product [Vitis vinifera]	0.981	0.731	0.517	1e-129
225449665	810	PREDICTED: uncharacterized protein LOC10	0.948	0.571	0.509	1e-126

>gi|255552378|ref|XP_002517233.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543604|gb|EEF45133.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/482 (65%), Positives = 380/482 (78%), Gaps = 25/482 (5%)

Query: 1   MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAI 60
           M RYLY+E+P  EL P+KG NG MLLT+CI+DD++DI LDLLQ Y +LAY QD+D DTA+
Sbjct: 121 MARYLYKESPKGELSPEKGKNGIMLLTTCIVDDLYDIALDLLQNYPELAYHQDSDKDTAL 180

Query: 61  DMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA 120
           +MLAQKPSAFPSG+ L  W+      I +  +  S+N   GDIE P  G           
Sbjct: 181 EMLAQKPSAFPSGSTLPLWQS-----IRVPESQPSSN---GDIESPRSG----------- 221

Query: 121 MTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180
                 ++ +++   VP ++++Y +KL HVQ  ELL C+C+EIST  +S+FE +G+ + +
Sbjct: 222 -----RLIRRNIIRRVPGLEYLYNLKLTHVQAHELLCCLCQEISTLHKSEFENIGVYRAI 276

Query: 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA 240
           F AVKHG VEF+ E+ KHYPDIIWC D+ NR IF YA LQRQEK+FNLIY MGAKKNS+A
Sbjct: 277 FKAVKHGTVEFVEEMTKHYPDIIWCEDECNRGIFMYAVLQRQEKVFNLIYKMGAKKNSIA 336

Query: 241 TNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYK 300
           T+WDK  NNILHQAA   PSSQLDRVSGAALQMQRELQW+KEVESIVQPKYKEMVN   K
Sbjct: 337 TSWDKYFNNILHQAASPPPSSQLDRVSGAALQMQRELQWYKEVESIVQPKYKEMVNFQRK 396

Query: 301 TPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLYL 360
           TPRALF++ HKKLVE+GEKWMK+TA S TVVAALIATIMFSA FTVPGGYD+Y G PLYL
Sbjct: 397 TPRALFTESHKKLVEEGEKWMKDTATSSTVVAALIATIMFSAIFTVPGGYDQY-GKPLYL 455

Query: 361 HRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIAT 420
           +   FMVF+V+DAMSLF+S +S+LMFLGILT+RY EEDFLKSLP +LI+GLS+LFFSIAT
Sbjct: 456 YEGVFMVFMVADAMSLFASTSSILMFLGILTARYREEDFLKSLPTKLIVGLSTLFFSIAT 515

Query: 421 MMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPK 480
           MM+TFGV L   L+ R++WV FPIILLASLPVTLFALLQFPLLVEIF+STYG GIF K +
Sbjct: 516 MMITFGVALFTFLRERVSWVLFPIILLASLPVTLFALLQFPLLVEIFFSTYGLGIFEKSR 575

Query: 481 KW 482
           KW
Sbjct: 576 KW 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131182|ref|XP_002328475.1| predicted protein [Populus trichocarpa] gi|222838190|gb|EEE76555.1| predicted protein [Populus trichocarpa]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/483 (61%), Positives = 357/483 (73%), Gaps = 65/483 (13%)

Query: 1   MVRYLYRETPIAELDP-DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTA 59
           MVRYLY  +P  EL P     NG MLLT+CI+D+++DI                     A
Sbjct: 119 MVRYLYSVSPKEELSPATNNKNGVMLLTTCIMDELYDI---------------------A 157

Query: 60  IDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTR 119
           +D+L   P       QLAF++                  S  D                 
Sbjct: 158 LDLLQHYP-------QLAFYQD-----------------SDKD----------------- 176

Query: 120 AMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV 179
             T L  +  K     +PAIK +Y +KL H Q   +L C+C +IST   S+F+++G+ K 
Sbjct: 177 --TALDMLAQKPSAFPIPAIKKMYNLKLIHGQALAVLCCLCEQISTLHRSEFKEIGVYKA 234

Query: 180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSV 239
           VF AVKHGIVEFI EI++HYPD+IW  DD NR IF YATLQRQEKIF+L+Y MGAKKNS+
Sbjct: 235 VFNAVKHGIVEFIVEIVRHYPDVIWFEDDLNRGIFLYATLQRQEKIFSLLYKMGAKKNSM 294

Query: 240 ATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHY 299
           AT WDK HNNILHQAAFLAPSSQLDRVSGAALQMQRELQW+KEVESIVQPKY+EMVN ++
Sbjct: 295 ATPWDKYHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWYKEVESIVQPKYREMVNFNH 354

Query: 300 KTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLY 359
           +TP+ALF++QH+KLVE+GEKWMK+T+ESCTVVAALI+TIMFSA FTVPGGYD+++GIP+Y
Sbjct: 355 RTPQALFTEQHRKLVEEGEKWMKDTSESCTVVAALISTIMFSAIFTVPGGYDQFSGIPIY 414

Query: 360 LHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIA 419
           LH NSFMVF+VSDAMSLF+S +S+LMFLGILTSRY EEDFLKSLP ++I+GLS LFFSIA
Sbjct: 415 LHGNSFMVFMVSDAMSLFASTSSLLMFLGILTSRYREEDFLKSLPTKMIVGLSCLFFSIA 474

Query: 420 TMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKP 479
           TMM+TFG+TL ++L+ R  W+SFPIILLASLPVTLFALLQFPLLVEIF+STYGPGIF++P
Sbjct: 475 TMMITFGITLFMMLRDRFPWISFPIILLASLPVTLFALLQFPLLVEIFFSTYGPGIFDRP 534

Query: 480 KKW 482
           KKW
Sbjct: 535 KKW 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093352|ref|XP_002309894.1| predicted protein [Populus trichocarpa] gi|222852797|gb|EEE90344.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/485 (61%), Positives = 356/485 (73%), Gaps = 65/485 (13%)

Query: 1   MVRYLYRETPIAELDP-DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTA 59
           MVRYLY  +P  EL P     NG MLLT+CIID+++DI                     A
Sbjct: 127 MVRYLYSVSPKEELSPATNNKNGVMLLTTCIIDELYDI---------------------A 165

Query: 60  IDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTR 119
           +D+L   P       QLAF++                  S  D                 
Sbjct: 166 LDLLQHYP-------QLAFYQD-----------------SDKD----------------- 184

Query: 120 AMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV 179
             T L  +  K     +PAIKH+Y +KL H Q   +L C+C +IST  +S+F+ +G+ + 
Sbjct: 185 --TALDMLAQKPSAFPIPAIKHMYNLKLMHGQAHAVLCCLCEQISTLHKSEFKVIGVYRA 242

Query: 180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSV 239
           VF AVKHGIVEFI E+++HYPDIIW  D+ NR IF YATLQRQEKIF+LIY MGAKKNS+
Sbjct: 243 VFSAVKHGIVEFIIEMIRHYPDIIWSEDELNRGIFLYATLQRQEKIFSLIYKMGAKKNSM 302

Query: 240 ATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHY 299
           AT+WDK  NNILHQAAF+APSSQLDRVSGA LQMQRELQW+KEVESIVQPKY+EM+N  +
Sbjct: 303 ATSWDKYQNNILHQAAFIAPSSQLDRVSGAPLQMQRELQWYKEVESIVQPKYREMLNSSH 362

Query: 300 KTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLY 359
           KT + LF++QH+KLVE+GEKWMK TAESCTVVAALIATIMFSA FTVPGGYD+Y+GIP+Y
Sbjct: 363 KTAQTLFTEQHRKLVEEGEKWMKATAESCTVVAALIATIMFSAIFTVPGGYDQYSGIPIY 422

Query: 360 LHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIA 419
           L+RNSFMVFIVSDAMSLF+S +S+LMF GILTSRY EEDFLKSLP +LI+GLS LFFSIA
Sbjct: 423 LNRNSFMVFIVSDAMSLFASSSSLLMFFGILTSRYREEDFLKSLPTKLIVGLSCLFFSIA 482

Query: 420 TMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKP 479
           TMM+TFG+TLV++L+ R  WVSFPIILLASLPVTLFALLQFPLLVEIF+STYGPGIF+KP
Sbjct: 483 TMMITFGITLVMMLRERFHWVSFPIILLASLPVTLFALLQFPLLVEIFFSTYGPGIFDKP 542

Query: 480 KKWWI 484
           KKWW+
Sbjct: 543 KKWWL 547

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293890|dbj|BAB01793.1| unnamed protein product [Arabidopsis thaliana]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/488 (54%), Positives = 366/488 (75%), Gaps = 15/488 (3%)

Query: 1   MVRYLYRETPIAELDP------DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDN 54
           +V+YLY  TP+++LDP       KG NGAML+T+CI+D ++ I LDL+QRY KLAY +D+
Sbjct: 170 LVQYLYSHTPLSDLDPCDDSDEHKGKNGAMLVTNCIVDGLYCIALDLIQRYPKLAYTRDS 229

Query: 55  DGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHK 114
           D DTAI  LAQ P AFPSGT+LAFW++WIYS I+I      + +++      ++   +H 
Sbjct: 230 DNDTAIMALAQTPYAFPSGTRLAFWQRWIYSCIHIEKINNPHEVNNHHHHHQYRNSQDHN 289

Query: 115 NFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKV 174
           +   + M  L +       LF   I+ +Y++KL H Q +E+L C+C+EI     +Q +  
Sbjct: 290 SIQEKLMKHLKY-------LFPRIIRRVYKLKLGHAQAKEILDCICQEIPKFDAAQQKNA 342

Query: 175 GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA 234
           G+ + +F AV++GIVE+I E+M+HYPDI+W  +    +IF YA  QRQEKIF+LIY +GA
Sbjct: 343 GLNQALFKAVENGIVEYIEEMMRHYPDIVWSKNSSGLNIFFYAVSQRQEKIFSLIYNIGA 402

Query: 235 KKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEM 294
           KKN +ATNWD  HNN+LH AA+ AP+S+L+ + GAALQMQRELQWFKEVE +VQPK+++M
Sbjct: 403 KKNILATNWDIFHNNMLHHAAYRAPASRLNLIPGAALQMQRELQWFKEVEKLVQPKHRKM 462

Query: 295 VNL-HYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEY 353
           VNL   KTP+ALF+DQHK LVEQGEKWMKETA SCTVVAALI T+MFS+AFTVPGGY   
Sbjct: 463 VNLKQKKTPKALFTDQHKDLVEQGEKWMKETATSCTVVAALITTMMFSSAFTVPGGY-RS 521

Query: 354 TGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSS 413
            G+PLY+H++ F +F++SDA+SLF+SC S+LMFLGIL SRY EEDFL+SLP +LI+GL +
Sbjct: 522 DGMPLYIHQHRFKIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLA 581

Query: 414 LFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGP 473
           LF S+ATM+VTF VTL+ ++  +I+WVS   + LA +P+ +F +LQFP+L+EIF +TY P
Sbjct: 582 LFLSMATMIVTFVVTLMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFRATYCP 641

Query: 474 GIFNKPKK 481
            +F+KP++
Sbjct: 642 NVFDKPRR 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147827121|emb|CAN62183.1| hypothetical protein VITISV_044401 [Vitis vinifera]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/512 (52%), Positives = 338/512 (66%), Gaps = 31/512 (6%)

Query: 1   MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAI 60
           MVRYLY  TPI EL P+KGTNGA LL   +  +I+DI L LL+ YR L++ +D  G+  +
Sbjct: 153 MVRYLYSVTPIEELSPEKGTNGATLLNFLVSANIYDIALHLLKHYRHLSFTKDYYGNYTV 212

Query: 61  DMLAQKPSAFPSGTQLAFWKKWIYSF---------------------IYIRSAYASNNIS 99
            MLA+KPSAF SG++L FW++WIY                       IY+R         
Sbjct: 213 RMLARKPSAFLSGSKLLFWERWIYCMLIIVQLIGKVMKQVWPLPFVIIYVRPFDGPIAED 272

Query: 100 H-------GDIERPHQGPAEH---KNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAH 149
           H        D E P     +H    +       +   ++WK L  FVP +KHIYE K  H
Sbjct: 273 HEXLDQLPADEENPENSQQDHHLGDHIIVHVPRRWRGLIWKLLLRFVPDLKHIYEAKWTH 332

Query: 150 VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDY 209
           V + +LL C+  EI     SQ E  GI + ++ A+KHGI+EFI  ++KH P+ IW     
Sbjct: 333 VGSSQLLDCIFEEIPYLTSSQLEMFGINQAIYDAIKHGIIEFIVALIKHDPESIWRKGVK 392

Query: 210 NRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGA 269
            R +FS+A + RQEKIF+L+Y +G KKN +A   D  HNNILH A  L+P+SQLDRVSGA
Sbjct: 393 GRTMFSHAVVLRQEKIFSLVYGLGIKKNVIARRHDIFHNNILHLAGKLSPTSQLDRVSGA 452

Query: 270 ALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCT 329
           ALQMQRELQWFKEVES+VQ KYKE  N ++KTP  +F ++H +LV+QGE WMK TA SC 
Sbjct: 453 ALQMQRELQWFKEVESMVQAKYKEEFNEYHKTPIHVFIEEHAELVKQGESWMKSTAASCM 512

Query: 330 VVAALIATIMFSAAFTVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGI 389
           VVA LIA +MF+ AFT+PGG    TGIP+++   +FMVFI SDA+SLFSS TSVLMFLGI
Sbjct: 513 VVATLIAALMFTTAFTLPGGTKNDTGIPVFIKSKAFMVFIASDALSLFSSSTSVLMFLGI 572

Query: 390 LTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLAS 449
           LTSRY  EDFLKSLP +LIIGLSSLFFSI +MMV FG  + ++L   ++W+SFPII LA 
Sbjct: 573 LTSRYAAEDFLKSLPIKLIIGLSSLFFSIVSMMVAFGSAIFVVLCQELSWISFPIIALAC 632

Query: 450 LPVTLFALLQFPLLVEIFYSTYGPGIFNKPKK 481
           +P+T FALLQFPLLVEI   TYG  IF+KP K
Sbjct: 633 IPITFFALLQFPLLVEIVTCTYGRSIFDKPTK 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088578|emb|CBI37569.3| unnamed protein product [Vitis vinifera]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/491 (53%), Positives = 332/491 (67%), Gaps = 27/491 (5%)

Query: 1   MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAI 60
           MVRYLY  TPI EL P+KGTNGA LL   +  +I+DI L LL+ YR L++ +D  G+  +
Sbjct: 242 MVRYLYSVTPIEELSPEKGTNGATLLNFLVSANIYDIALHLLKHYRHLSFTKDYYGNYTV 301

Query: 61  DMLAQKPSAFPSGTQLAFWKKWIYSFIY----------IRSAYASNNISHGDIERPHQGP 110
            MLA+KPSAF SG++L FW++WIYS  Y          +   Y +N+++         GP
Sbjct: 302 RMLARKPSAFLSGSKLLFWERWIYSCKYFIVNHHLLEKVYLHYLANHLTCPSNYMDTYGP 361

Query: 111 AEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQ 170
            + K                   L  P +KHIYE K  HV + +LL C+  EI     SQ
Sbjct: 362 PKSKQV-----------------LVFPDLKHIYEAKWTHVGSSQLLDCIFEEIPYLTSSQ 404

Query: 171 FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIY 230
            E  GI + ++ A+KHGI+EFI  ++KH P+ IW      R +FS+A + RQEKIF+L+Y
Sbjct: 405 LEMFGINQAIYDAIKHGIIEFIVALIKHDPESIWRKGVKGRTMFSHAVVLRQEKIFSLVY 464

Query: 231 TMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPK 290
            +G KKN +A   D  HNNILH A  L+P SQLDRVSGAALQMQRELQWFKEVES+VQ K
Sbjct: 465 GLGIKKNVIARRHDIFHNNILHLAGKLSPPSQLDRVSGAALQMQRELQWFKEVESMVQAK 524

Query: 291 YKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGY 350
           YKE  N ++KTP  +F ++H +LV+QGE WMK TA SC VVA LIA +MF+ AFT+PGG 
Sbjct: 525 YKEEFNEYHKTPIHVFIEEHAELVKQGESWMKSTAASCMVVATLIAALMFTTAFTLPGGT 584

Query: 351 DEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIG 410
              TGIP+++   +FMVFI SDA+SLFSS TSVLMFLGILTSRY  EDFLKSLP +LIIG
Sbjct: 585 KNDTGIPVFIKSKAFMVFIASDALSLFSSSTSVLMFLGILTSRYAAEDFLKSLPIKLIIG 644

Query: 411 LSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYST 470
           LSSLFFSI +MMV FG  + ++L   ++W+SFPII LA +P+T FALLQFPLLVEI   T
Sbjct: 645 LSSLFFSIVSMMVAFGSAIFVVLCQELSWISFPIIALACIPITFFALLQFPLLVEIVTCT 704

Query: 471 YGPGIFNKPKK 481
           YG  IF+KP K
Sbjct: 705 YGRSIFDKPTK 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477037|ref|XP_002275355.2| PREDICTED: uncharacterized protein LOC100250623 [Vitis vinifera]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/484 (53%), Positives = 323/484 (66%), Gaps = 30/484 (6%)

Query: 1   MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAI 60
           MVRYLY  TPI EL P+KGTNGA LL   +  +I+DI L LL+ YR L++ +D  G+  +
Sbjct: 307 MVRYLYSVTPIEELSPEKGTNGATLLNFLVSANIYDIALHLLKHYRHLSFTKDYYGNYTV 366

Query: 61  DMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEH---KNFF 117
            MLA+KPSAF SGT                           D E P     +H    +  
Sbjct: 367 RMLARKPSAFLSGT---------------------------DEENPENSQQDHHLGDHII 399

Query: 118 TRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK 177
                +   ++WK L  FVP +KHIYE K  HV + +LL C+  EI     SQ E  GI 
Sbjct: 400 VHVPRRWRGLIWKLLLRFVPDLKHIYEAKWTHVGSSQLLDCIFEEIPYLTSSQLEMFGIN 459

Query: 178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKN 237
           + ++ A+KHGI+EFI  ++KH P+ IW      R +FS+A + RQEKIF+L+Y +G KKN
Sbjct: 460 QAIYDAIKHGIIEFIVALIKHDPESIWRKGVKGRTMFSHAVVLRQEKIFSLVYGLGIKKN 519

Query: 238 SVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNL 297
            +A   D  HNNILH A  L+P SQLDRVSGAALQMQRELQWFKEVES+VQ KYKE  N 
Sbjct: 520 VIARRHDIFHNNILHLAGKLSPPSQLDRVSGAALQMQRELQWFKEVESMVQAKYKEEFNE 579

Query: 298 HYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIP 357
           ++KTP  +F ++H +LV+QGE WMK TA SC VVA LIA +MF+ AFT+PGG    TGIP
Sbjct: 580 YHKTPIHVFIEEHAELVKQGESWMKSTAASCMVVATLIAALMFTTAFTLPGGTKNDTGIP 639

Query: 358 LYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFS 417
           +++   +FMVFI SDA+SLFSS TSVLMFLGILTSRY  EDFLKSLP +LIIGLSSLFFS
Sbjct: 640 VFIKSKAFMVFIASDALSLFSSSTSVLMFLGILTSRYAAEDFLKSLPIKLIIGLSSLFFS 699

Query: 418 IATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFN 477
           I +MMV FG  + ++L   ++W+SFPII LA +P+T FALLQFPLLVEI   TYG  IF+
Sbjct: 700 IVSMMVAFGSAIFVVLCQELSWISFPIIALACIPITFFALLQFPLLVEIVTCTYGRSIFD 759

Query: 478 KPKK 481
           KP K
Sbjct: 760 KPTK 763

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834778|ref|XP_002885271.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331111|gb|EFH61530.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/487 (50%), Positives = 327/487 (67%), Gaps = 72/487 (14%)

Query: 1   MVRYLYRETPIAELDP------DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDN 54
           +V YLY  TP+++LDP       KG NGAML+T+CI+D ++ I                 
Sbjct: 170 LVEYLYNHTPLSDLDPCDDSDEHKGKNGAMLVTNCIVDGLYGI----------------- 212

Query: 55  DGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHK 114
               A+D++ + P       +LA+ +        I  A           + PH  P+   
Sbjct: 213 ----ALDLIQRYP-------KLAYTRDSDNDTAIIALA-----------QTPHAFPS--- 247

Query: 115 NFFTRAMTKLLHMVWKSLNLFVP-AIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK 173
                                VP  I+ +Y++KL H Q +E+L C+C+EI     +Q + 
Sbjct: 248 ---------------------VPHIIRRVYKLKLGHAQAKEILDCICQEIPKFDAAQQKN 286

Query: 174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG 233
            G+ + +F AV++GIVE+I E+M+HYPDI+W  D    +IF YA  QRQEKIF+LIY MG
Sbjct: 287 AGLNQALFKAVENGIVEYIEEMMRHYPDIVWFKDSCGLNIFFYAVSQRQEKIFSLIYNMG 346

Query: 234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKE 293
           AKKN +ATNWDK HNN+LH AA+ AP+S+L+ + GAALQMQRELQWFKEVE +VQPK+++
Sbjct: 347 AKKNILATNWDKFHNNMLHHAAYRAPASRLNLIPGAALQMQRELQWFKEVERLVQPKHRK 406

Query: 294 MVNL-HYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDE 352
           MVNL   KTP+ALF+DQHK LVEQGEKWMKETA SCTVVAALI T+MFS+AFTVPGGY  
Sbjct: 407 MVNLKQKKTPKALFTDQHKDLVEQGEKWMKETAASCTVVAALITTMMFSSAFTVPGGY-R 465

Query: 353 YTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLS 412
             G+PLY+H++ F +F++SDA+SLF+SC S+LMFLGIL SRY EEDFL+SLP +LI+GL 
Sbjct: 466 SDGMPLYIHKHMFKIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLF 525

Query: 413 SLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYG 472
           SLF S+ATMMVTF VTL+ ++  +I+WVS   + LA +P+ +F +LQFP+L+EIF STY 
Sbjct: 526 SLFLSMATMMVTFVVTLMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFCSTYF 585

Query: 473 PGIFNKP 479
           P +F+KP
Sbjct: 586 PRVFDKP 592

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087932|emb|CBI35215.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/485 (51%), Positives = 326/485 (67%), Gaps = 6/485 (1%)

Query: 1   MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAI 60
           M R+LY  TP  +L P +G NGA LL++CI   I D+ LD+L+++ +LA + D +    I
Sbjct: 174 MTRFLYSHTPQEKLAPGQGKNGASLLSNCIASQILDVALDILKKHPRLAISLDMERIIPI 233

Query: 61  DMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA 120
            +L Q PS F SG+QL FW++WIYS I ++  +AS+ I   ++    Q   + KN   + 
Sbjct: 234 FVLGQMPSLFKSGSQLWFWQRWIYSCIPVKVDHASDQI-QVNVADDTQHSRDVKNNTAKV 292

Query: 121 MTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180
           +  L   V   L L    IK+IY  KL H Q  ELL C+C EI          + +   V
Sbjct: 293 LRHLYGPVSYLLQLL--GIKNIYAKKLRHAQATELLQCICNEIQKVNVEGTLGLRLHHTV 350

Query: 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG-AKKNSV 239
             AVK G V+F TE++K+ P ++   D  +R+IF  A L RQEKIF+L++ +   KK  +
Sbjct: 351 IQAVKQGNVDFATEMIKYTPQLVQKTDINDRNIFFIAILNRQEKIFSLLHGLNNVKKMKM 410

Query: 240 ATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHY 299
            +N D+  NN+LH AA LAP++QLD +SGAALQMQRELQWFKEVESIV P  K++VN   
Sbjct: 411 TSNVDRFGNNMLHLAAMLAPANQLDGISGAALQMQRELQWFKEVESIVPPICKDLVNADG 470

Query: 300 KTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLY 359
           K P  LF++QH  LV++GEKWMK+ A S + VAALI TIMF+AAFT+PGG D+ TG P++
Sbjct: 471 KRPSELFTEQHANLVKEGEKWMKDIAASSSFVAALIVTIMFAAAFTIPGGNDD-TGAPIF 529

Query: 360 LHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIA 419
           L  + FMVFI+SD++SLFS+ TSVLMFLGILTS+Y E  FL  LP +LIIGLS+LFFSIA
Sbjct: 530 LGNDLFMVFIISDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLIIGLSTLFFSIA 589

Query: 420 TMMVTFGVTLVIILKAR-IAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNK 478
           TMM+ F   L I+LK R    V  PIILLA +PVTLF LLQFPLLVEIF STYGPGIFN+
Sbjct: 590 TMMIAFCAALAILLKGRSTKVVIIPIILLACVPVTLFVLLQFPLLVEIFISTYGPGIFNR 649

Query: 479 PKKWW 483
             + W
Sbjct: 650 KIERW 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449665|ref|XP_002263931.1| PREDICTED: uncharacterized protein LOC100245348 [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/485 (50%), Positives = 321/485 (66%), Gaps = 22/485 (4%)

Query: 1   MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAI 60
           M R+LY  TP  +L P +G NGA LL++CI   I D+ LD+L+++ +LA + D +    I
Sbjct: 345 MTRFLYSHTPQEKLAPGQGKNGASLLSNCIASQILDVALDILKKHPRLAISLDMERIIPI 404

Query: 61  DMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA 120
            +L Q PS F SG+QL FW++WIYS I ++  +AS+ I   ++    Q   + KN   + 
Sbjct: 405 FVLGQMPSLFKSGSQLWFWQRWIYSCIPVKVDHASDQI-QVNVADDTQHSRDVKNNTAKG 463

Query: 121 MTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV 180
                             IK+IY  KL H Q  ELL C+C EI          + +   V
Sbjct: 464 ------------------IKNIYAKKLRHAQATELLQCICNEIQKVNVEGTLGLRLHHTV 505

Query: 181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG-AKKNSV 239
             AVK G V+F TE++K+ P ++   D  +R+IF  A L RQEKIF+L++ +   KK  +
Sbjct: 506 IQAVKQGNVDFATEMIKYTPQLVQKTDINDRNIFFIAILNRQEKIFSLLHGLNNVKKMKM 565

Query: 240 ATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHY 299
            +N D+  NN+LH AA LAP++QLD +SGAALQMQRELQWFKEVESIV P  K++VN   
Sbjct: 566 TSNVDRFGNNMLHLAAMLAPANQLDGISGAALQMQRELQWFKEVESIVPPICKDLVNADG 625

Query: 300 KTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTGIPLY 359
           K P  LF++QH  LV++GEKWMK+ A S + VAALI TIMF+AAFT+PGG D+ TG P++
Sbjct: 626 KRPSELFTEQHANLVKEGEKWMKDIAASSSFVAALIVTIMFAAAFTIPGGNDD-TGAPIF 684

Query: 360 LHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIA 419
           L  + FMVFI+SD++SLFS+ TSVLMFLGILTS+Y E  FL  LP +LIIGLS+LFFSIA
Sbjct: 685 LGNDLFMVFIISDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLIIGLSTLFFSIA 744

Query: 420 TMMVTFGVTLVIILKAR-IAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNK 478
           TMM+ F   L I+LK R    V  PIILLA +PVTLF LLQFPLLVEIF STYGPGIFN+
Sbjct: 745 TMMIAFCAALAILLKGRSTKVVIIPIILLACVPVTLFVLLQFPLLVEIFISTYGPGIFNR 804

Query: 479 PKKWW 483
             + W
Sbjct: 805 KIERW 809

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.952	0.695	0.384	5.8e-82
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.721	0.563	0.417	5.9e-76
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.856	0.693	0.394	8.6e-72
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.659	0.927	0.415	1.9e-60
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.731	0.621	0.365	1.8e-55
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.577	0.412	0.249	8.8e-11
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.557	0.441	0.229	6.1e-08
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.520	0.418	0.230	1.1e-07
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.538	0.388	0.237	2.8e-07
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.516	0.427	0.237	2.9e-07

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 187/486 (38%), Positives = 280/486 (57%)

Query:     1 MVRYLYRETPIAELDPDKGTNGAMLLTSCXXXXXXXXXXXXXQRYRKLAYAQDNDGDTA- 59
             M RYLY  TP+  L    G +G++L  +                 R+LA  + +  ++  
Sbjct:   201 MARYLYTRTPVQVLLDQDGYHGSLLFLNAIFYKMLDIALDLFNMSRRLAVTKHSQIESIP 260

Query:    60 IDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTR 119
             I +LA KP  FP G  L    ++IYS+I ++            + +P +   + +N   R
Sbjct:   261 IIVLASKPDLFPGGCYLGPLTRFIYSWIQVKLP---------TLPQPSRSNRDQQNTLMR 311

Query:   120 AMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV 179
                KLL    K L+ +   I  +Y +K+ H+Q ++LL  +  E    G  +  +  + + 
Sbjct:   312 ---KLL----KGLSKWT-GIDEVYRLKVMHLQAKKLLLGISEETLALGLKERSET-VDEA 362

Query:   180 VFIAVKHGIVEFITEIMKHYPDIIWCY-DDYNRHIFSYATLQRQEKIFNLIYTMGAKKNS 238
             +  AV++G V+F+ E++++  +++W      +  +F  A   RQEK+F+L+Y +  +K  
Sbjct:   363 LLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYL 422

Query:   239 VATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLH 298
             +  + D   N +LH A F +P S+L  V GA LQ+QRELQWFKEVE I     KE VN  
Sbjct:   423 LLADKDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTE 482

Query:   299 YKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYT-GIP 357
              +TP  +F+ +H+ L ++ EKWMK+TA SC++VAALI T+ F+A FTVPGG D+ + G P
Sbjct:   483 EQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKP 542

Query:   358 LYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFS 417
              +L    F++FIVSD +S F+SCTSVL+FLGILT+RY  +DFL  LP ++I GLS LF S
Sbjct:   543 FHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVS 602

Query:   418 IATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFN 477
             IA M++ F   L  ++     W+  P IL A LP  LF LLQ+PLL E+ +STYG GIF+
Sbjct:   603 IAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYGKGIFD 662

Query:   478 KPKKWW 483
             +  K W
Sbjct:   663 RNMKCW 668

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 150/359 (41%), Positives = 221/359 (61%)

Query:   124 LLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIA 183
             L+  V K L+  +  I  +Y +K+ H+Q ++LL  +  E    G  +  +  + + +  A
Sbjct:   270 LMGKVLKCLSKCI-GIDEVYRLKVMHLQAKKLLKGISEETLALGLKERSE-SVDEALLFA 327

Query:   184 VKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNW 243
             V++G V+F+ E++K+  +++W        +F+ A   RQEK+F+L+Y +G +K     + 
Sbjct:   328 VRYGNVDFLVEMIKNNSELLWSTGTST--LFNTAVQVRQEKVFSLLYGLGDRKYLFLADK 385

Query:   244 DKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPR 303
             D   N++LH A +  P+ +L  V  A LQMQRELQWFKE+E IV     E VN    TP 
Sbjct:   386 DSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPI 445

Query:   304 ALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEYTG-IPLYLHR 362
              +F  +H+ +  + EKWMK+TA SC++VAALI T+ F+A FTVPGG D+ +G  P + H 
Sbjct:   446 EIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHE 505

Query:   363 NSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMM 422
               F++FIVSD +S F++CTSVL+FLGILT+RY  +DFL SLP  +I GLS+LF SIA M+
Sbjct:   506 RIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAML 565

Query:   423 VTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVEIFYSTYGPGIFNKPKK 481
             V F   L  I      W+  P I  A  P  LF ++Q+PLL E+ +STYG  IF++  K
Sbjct:   566 VAFSSALFTIFND--PWIVAPTIFFACFPALLFVMIQYPLLKELIFSTYGKRIFDRNMK 622

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 173/439 (39%), Positives = 260/439 (59%)

Query:    57 DTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG-------DIERPHQG 109
             D A+D++   PS   + T+ A  +  IY FI ++     ++ + G          R  + 
Sbjct:   174 DIALDIIKHLPSV--AVTKHARQRLPIYKFIAVKPDLFRSHCNFGFWRHLIYSCIRVSEN 231

Query:   110 PAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC---REISTQ 166
             P  +++     MT    +    L  F   IK  Y++K  H Q Q+LL  +C   R+I  +
Sbjct:   232 PRPNRDNRLFCMT----LPQSLLKWF--GIKQTYDLKKRHSQAQKLLKQMCTSLRDIMAK 285

Query:   167 GESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYN-RHIFSYATLQRQEKI 225
              E ++++  + + +  A K G  +F  EI+K    ++W  +  + R++F  A   ++EKI
Sbjct:   286 NEIRWKET-VYEALLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKI 344

Query:   226 FNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVES 285
             FNLI+ +  +K ++  ++DK +NNILH A  L+   QL ++SGAAL+MQRE QWFKEVES
Sbjct:   345 FNLIHGLDDRKVTLLRSYDKGNNNILHIAGRLSTPDQLSKISGAALKMQRESQWFKEVES 404

Query:   286 IVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFT 345
             +V  +     N   KTPR +F   H+ L ++GE+WMK TA +C+ VAALIAT+ F A FT
Sbjct:   405 LVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFT 464

Query:   346 VPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPR 405
             VPGG D  +G PL L+   F  FI +D ++ F+SC SVL+FL ILTSRY  +DF+ SLPR
Sbjct:   465 VPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPR 524

Query:   406 QLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTLFALLQFPLLVE 465
             ++I+G S LF SIA+M+V F  +L   ++ + A V +P+  LAS P  LF +LQ+PLL E
Sbjct:   525 KMILGQSILFISIASMLVAFITSLSASMRHKPALV-YPLKPLASFPSLLFLMLQYPLLKE 583

Query:   466 IFYSTYGPGIFNKPKKWWI 484
             +  STYG  +F +  K W+
Sbjct:   584 MISSTYGKRLFYRDTKNWL 602

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 138/332 (41%), Positives = 202/332 (60%)

Query:   147 LAHVQTQELLSCVCREISTQGESQFEKVGIKKVV-FIAVKHGIVEFITEIMKHYPDIIWC 205
             LAH+  +EL S V + +  +  SQF  VG   ++ F A + G +E +  +++ YPD+IW 
Sbjct:     4 LAHMVVEELWSFVIK-LPVEEISQF--VGSSPMLLFDAAQSGNLELLLILIRSYPDLIWT 60

Query:   206 YDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN-NILHQAAFLAPSSQLD 264
              D  N+ +F  A + R EKIFN IY +GA K+ +A   +K  N N+LH  A L P ++L 
Sbjct:    61 VDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQ 120

Query:   265 RVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKET 324
              VSGAALQMQRE+ W+K V+ IV   Y +  N   +    LF+ +H  L ++GEKWMKET
Sbjct:   121 VVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKET 180

Query:   325 AESCTVVAALIATIMFSAAFTVPGGYD-----EYTGIPLYLHRNSFMVFIVSDAMSLFSS 379
             A +C +V+ LIAT++F+AAFT+PGG D     +  G P +     F VFI+SD+++L SS
Sbjct:   181 ATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSS 240

Query:   380 CTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAW 439
              TS+++FL ILTSRY E  F  +LP +L++GL +LF SI +M++ F  TL++I      W
Sbjct:   241 VTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKW 300

Query:   440 VSFPIILLASLPVTLFALLQFPLLVEIFYSTY 471
                 ++ +AS     F +L F L  +   S Y
Sbjct:   301 SLILLVYVASATALSFVVLHFQLWFDTLRSAY 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 137/375 (36%), Positives = 219/375 (58%)

Query:   112 EHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLA-HVQTQELLSCVCREIST-QGES 169
             ++ N F   ++  ++ V+  + L++     +Y  +LA +  + + L  + R+ S    +S
Sbjct:   186 QYLNLFHTMISADIYGVFADVPLWMLERVDLYRKELALYPNSNKALHLLARKTSAISHKS 245

Query:   170 Q---FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIF 226
             Q   F++V    ++F A + G VE +  +++ + D++W  D+ NR +F  A L R E IF
Sbjct:   246 QLNLFQQVASSWLLFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIF 305

Query:   227 NLIYTMGAKKNSVATNWDK-AHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVES 285
             +LIY +G  K+ +A+  +K + + +LH  A L P ++    SGAAL MQ+EL WFK V+ 
Sbjct:   306 SLIYELGGIKDLIASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKE 365

Query:   286 IVQPKYKEMVNLHYKTPRALFSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFT 345
             IV   Y E  N   +    +F++QH+ L ++GE+WMKETA +C + A LIAT++F+AA T
Sbjct:   366 IVPRSYIETKNTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAIT 425

Query:   346 VPGGYDEY------TGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDF 399
             +PGG D+        G P +  R  F +F +SD+++LFSS  S+++FL I TSRY EEDF
Sbjct:   426 IPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDF 485

Query:   400 LKSLPRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIIL---LASLPVTLFA 456
                LP +L+ GLS+LF SI +M++ F  ++++I   R+   S  ++L   LASL    FA
Sbjct:   486 RYDLPTKLMFGLSALFISIISMILAFTFSMILI---RVEKASLSLVLISCLASLTALTFA 542

Query:   457 LLQFPLLVEIFYSTY 471
              L F L      S Y
Sbjct:   543 YLYFHLWFNTLRSVY 557

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 77/309 (24%), Positives = 142/309 (45%)

Query:   180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSV 239
             + +AV+ G ++ + EI K  P      +   +++   A    + +I   + T   + N +
Sbjct:   342 IHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHL-TAHEQINHL 400

Query:   240 ATNWDKAHNNILHQAA-FLAPSS--QLDRVSGAALQMQRELQWFKEVESIVQPKY--KE- 293
             A   D   N  LH A  +  P +  +L       +Q    L      ES +QP Y  +E 
Sbjct:   401 ANEKDVDGNTPLHLATIYWRPRAVRELGGKKNLLIQNNNGLVALDIAESKLQPHYIFRER 460

Query:   294 -----MVNLHYKT-PRALFSD-QHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTV 346
                  +V LH++  PR   +  Q + ++ QG    K+   +  VVAALI T+ F++ FT+
Sbjct:   461 LTLLALVQLHFQNDPRCAHTMIQTRPIMPQGGN--KDYINALLVVAALITTVTFTSGFTI 518

Query:   347 PGGYDEYT---GIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSL 403
             PGG+ + T   G+   +     ++F++ D ++L    TS L  + ++ ++ G+    +S 
Sbjct:   519 PGGFKDSTPNVGMANLITNPRLILFLIFDILALE---TSFLAVVSLILAQLGDPTLYQSS 575

Query:   404 PRQLIIGLSSLFFSIATMMVTFGVTLVIILKARIAWVSFPIILLASLPVTL-FALLQFPL 462
              R   + + SL+F++  M + F   +VI     + W+ + I  L    +TL F+     L
Sbjct:   576 VR---VAMISLYFAMYFMTLAFFFVMVIAA-GNVRWLVYVIFCLIFSILTLAFSRFMPHL 631

Query:   463 LVEIFYSTY 471
             L+    S+Y
Sbjct:   632 LLHYCGSSY 640

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
 Identities = 69/301 (22%), Positives = 134/301 (44%)

Query:   180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSV 239
             + +A K G V  I E +KH PD     ++  ++IF  A +  + K+   +  +   K  +
Sbjct:   291 IHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKRMM 350

Query:   240 ATNWDKAHNNILHQAA---FLAPSSQLDRVSGAALQ-MQRELQWFKEVESIVQPK----- 290
                 D   N  LH A    +    + L    G  L+ +  E     ++   ++       
Sbjct:   351 -NEQDINGNTPLHLATKHRYPIVVNMLTWNDGINLRALNNEGFTALDIAETMKDNNAYVL 409

Query:   291 YKEMVNLHYKTPRALFSDQHKKL-VEQGEKWM----KETAESCTVVAALIATIMFSAAFT 345
             YK ++ +   +  A        L V Q  K      K++  +  V A L+AT+ F+A  T
Sbjct:   410 YKRLIWMALVSAGAPHGPNLIPLTVSQSSKQSPERYKDSVNTLMVTATLVATVTFAAGLT 469

Query:   346 VPGGYDE---YTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKS 402
             +PGGY     + G+   +++ +F VF++ + +++   CTSV+  + ++ ++ G+    K 
Sbjct:   470 LPGGYMSSAPHLGMAALVNKLNFKVFLLLNNIAM---CTSVVTVMALIWAQLGDALLTKK 526

Query:   403 LPRQLIIGLSSLFFSIATMMVTF--GVTLVIILKARIAWVSFPIILLASLPVTLFALLQF 460
               R   + L  L  ++ +MM+    G+TLV+   + + W+S  ++ + S  +    LL  
Sbjct:   527 AFR---LALPLLLTAVVSMMMASVAGLTLVV---SDLPWLSHLVLAIDSAFLVFLMLLII 580

Query:   461 P 461
             P
Sbjct:   581 P 581

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 63/273 (23%), Positives = 129/273 (47%)

Query:   182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFN-LIYTMGAKKNSVA 240
             +AVK    + +  +++  P I+   D +   +   AT +++ +I N L+       N++ 
Sbjct:   286 MAVKGVSSQVVRLLLRADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALT 345

Query:   241 TNWDKAHN---NILHQAAFLAPSSQLDR---VSGAALQMQRELQWFKEVESIVQPKYKEM 294
              +   A++    + H          L R   +    L   R+ +  K V  I +  + ++
Sbjct:   346 RDHKTAYDIAEGLTHSEETAEIKEILSRCGALKANELNQPRD-ELRKTVTEIKKDVHTQL 404

Query:   295 VNLHYKTPRAL--FSDQHKKLVEQGEKWMKETAESCTVVAALIATIMFSAAFTVPGGYDE 352
                  KT + +   + + +KL   G   +     S TVVA L AT+ F+A FTVPGG D+
Sbjct:   405 EQTR-KTNKNVDGIAKELRKLHRAG---INNATNSVTVVAVLFATVAFAAIFTVPGGDDD 460

Query:   353 YTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLS 412
             + G+ + +H  SF +F + +A++LF+S   V++ + ++      E  +  +  +L+  L+
Sbjct:   461 H-GVAVMVHATSFKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKLM-WLA 518

Query:   413 SLFFSIATMMVTFGVTLVIILKARIAWVSFPII 445
             S+  ++A +  ++   +V+  + R A V   +I
Sbjct:   519 SVCTTVAFISSSY---IVVGRRNRYAAVVVTVI 548

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 69/291 (23%), Positives = 131/291 (45%)

Query:   180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSV 239
             + +AVK+G V+ +  I+K  PD +   D  N+++   A    + ++   I      KN  
Sbjct:   354 IHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKE 413

Query:   240 AT-NWDKAHNNI-LHQAAF-LAPS--SQL---DRVSGAALQMQRELQWFKEVESIVQPKY 291
                N + A+ N  LH A     P   S L   +RV    L     +      E  +   Y
Sbjct:   414 KLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDG-VTALDIAEKNMDSSY 472

Query:   292 KEMVNLHYKTPRALFSDQHKKLV--------EQGEKWMKETAESCTVVAALIATIMFSAA 343
                  L +    +  + +  KL+          G K+ K+   +  +VA L+AT+ F+A 
Sbjct:   473 TFFERLTWMALISAGAPRGPKLILSTPVTQNSDGGKY-KDRVNTLLLVATLVATMTFTAG 531

Query:   344 FTVPGGYDEYT---GIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFL 400
             FT+PGGY+      G+     + +F VF+V D ++++  C S++  + ++ ++ G+   +
Sbjct:   532 FTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMY--C-SIITIVALIWAQLGDLSLI 588

Query:   401 -KSLPRQL-IIGLSSLFFSIATMMVTFGVT--LVIILKARIAWVSFPIILL 447
              K+    L ++GL+    SIA M  T+     L+I+     +++ F ++ +
Sbjct:   589 MKAFNLALPLLGLALTSMSIAFMAGTYAAVYGLLIVGVLTSSYLDFLLLFV 639

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 62/261 (23%), Positives = 118/261 (45%)

Query:   170 QFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLI 229
             + +K G +  + +AVK    E +  ++   P I+   D         AT +++ +I  L+
Sbjct:   261 RIDKKG-QTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELL 319

Query:   230 YTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDR--VSGAALQMQRELQWFKEVESIV 287
              ++     +  T   K   +I         SS +        AL+     Q   E+ S V
Sbjct:   320 LSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTV 379

Query:   288 QPKYKEMVNLHYKTPRALFSDQH---KKLVEQGEKWMKETAESCTVVAALIATIMFSAAF 344
               + K  V++  +  +    + H   K+L +   + +     S TVVA L AT+ F+A F
Sbjct:   380 T-QIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIF 438

Query:   345 TVPGGYDEYTGIPLYLHRNSFMVFIVSDAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLP 404
             TVPGG D   G  + + R SF +F + +A++LF+S   V++ + ++      E  +  + 
Sbjct:   439 TVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVI 497

Query:   405 RQLIIGLSSLFFSIATMMVTF 425
              +L+  L+S+  S+A +  ++
Sbjct:   498 NKLM-WLASMCTSVAFLASSY 517

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
pfam13962	114	pfam13962, PGG, Domain of unknown function	8e-29

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  109 bits (275), Expect = 8e-29
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 13/121 (10%)

Query: 318 EKWMKETAESCTVVAALIATIMFSAAFTVPGGY-----DEYTGIPLYL-HRNSFMVFIVS 371
            +W+++T  S  VVA LIAT+ F+A FT PGGY       + G P+       F  F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 372 DAMSLFSSCTSVLMFLGILTSRYGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVI 431
           + ++  +S  +V++ L      Y    F + LPR L+  L+ L+ S+ ++MV F      
Sbjct: 61  NTIAFVASLVAVILLL------YIVPSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 432 I 432
           +
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.92
PHA02791	284	ankyrin-like protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA02946	446	ankyin-like protein; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.91
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02878	477	ankyrin repeat protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.88
PHA02917	661	ankyrin-like protein; Provisional	99.87
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02917	661	ankyrin-like protein; Provisional	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.84
PHA02795	437	ankyrin-like protein; Provisional	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02859	209	ankyrin repeat protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.79
PHA02795	437	ankyrin-like protein; Provisional	99.79
KOG0508	615	consensus Ankyrin repeat protein [General function	99.78
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.74
PHA02741	169	hypothetical protein; Provisional	99.74
PHA02792	631	ankyrin-like protein; Provisional	99.74
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.72
PHA02736	154	Viral ankyrin protein; Provisional	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
PHA02743	166	Viral ankyrin protein; Provisional	99.69
PHA02884	300	ankyrin repeat protein; Provisional	99.68
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.68
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.65
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.64
PHA02884	300	ankyrin repeat protein; Provisional	99.64
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.62
KOG0514	452	consensus Ankyrin repeat protein [General function	99.62
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.61
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.6
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.57
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.53
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.46
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.45
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.42
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.41
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.26
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.26
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.17
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.07
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.06
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.01
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.99
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.96
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.95
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.93
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.86
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.41
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.34
PF13606	30	Ank_3: Ankyrin repeat	98.34
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.33
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.31
PF13606	30	Ank_3: Ankyrin repeat	98.29
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.23
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.15
KOG0522	560	consensus Ankyrin repeat protein [General function	98.11
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.02
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.02
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.92
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.74
KOG0522	560	consensus Ankyrin repeat protein [General function	97.63
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.54
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.46
KOG2384	223	consensus Major histocompatibility complex protein	97.29
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.08
KOG0511	516	consensus Ankyrin repeat protein [General function	97.0
KOG2384	223	consensus Major histocompatibility complex protein	96.82
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.76
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.56
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.61
KOG0511	516	consensus Ankyrin repeat protein [General function	95.57
KOG2505	591	consensus Ankyrin repeat protein [General function	94.58
KOG2505	591	consensus Ankyrin repeat protein [General function	93.52
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	85.65
KOG4591	280	consensus Uncharacterized conserved protein, conta	83.44
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	80.37

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4e-31  Score=225.08  Aligned_cols=184  Identities=15%  Similarity=0.084  Sum_probs=143.1

Q ss_pred             CCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           14 LDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        14 l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      ++-..|.||+||||+||..|+.+++.+|+..-...++.+|..||||||+||..|+                         
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~-------------------------   84 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN-------------------------   84 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc-------------------------
Confidence            3334566999999999999999999999976455677788899999999999882                         


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhh-hcccCchhhh
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCRE-ISTQGESQFE  172 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~-~~~~~~~~~~  172 (488)
                                                     .                            ++++.|+.+ +.+.+.   .
T Consensus        85 -------------------------------~----------------------------evVk~Ll~r~~advna---~  102 (226)
T KOG4412|consen   85 -------------------------------D----------------------------EVVKELLNRSGADVNA---T  102 (226)
T ss_pred             -------------------------------H----------------------------HHHHHHhcCCCCCcce---e
Confidence                                           1                            333344433 222222   5


Q ss_pred             hcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHH
Q 011338          173 KVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILH  252 (488)
Q Consensus       173 ~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLh  252 (488)
                      +..|.||||+|+..|+.||+++|+++++. +..+|..|+||||-|+.-|+.+++++|+..++.    +|.+|+.|+||||
T Consensus       103 tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~----~n~qDk~G~TpL~  177 (226)
T KOG4412|consen  103 TNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP----LNTQDKYGFTPLH  177 (226)
T ss_pred             cCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCC----CCcccccCccHHH
Confidence            67799999999999999999999999855 567799999999999999999999999999865    8999999999999


Q ss_pred             HHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          253 QAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       253 lA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      .|...|+.++...+                |   ....+..+.|++| ||+.+...+
T Consensus       178 ~al~e~~~d~a~lL----------------V---~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  178 HALAEGHPDVAVLL----------------V---RAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HHHhccCchHHHHH----------------H---HhccceeeccccC-chHHHHHHH
Confidence            99777775532111                1   1224566788888 998776543

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1e-28  Score=254.46  Aligned_cols=278  Identities=10%  Similarity=0.003  Sum_probs=193.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++++.+.   +|.+|.||||+|+..|+.+++++||+++ .+++.+|.+|+||||+|+..++     ...+.++
T Consensus        54 iv~~Ll~~Gadvn~---~d~~G~TpLh~Aa~~g~~eiv~lLL~~G-Adin~~d~~g~TpLh~A~~~~~-----~~~e~v~  124 (446)
T PHA02946         54 FVEELLHRGYSPNE---TDDDGNYPLHIASKINNNRIVAMLLTHG-ADPNACDKQHKTPLYYLSGTDD-----EVIERIN  124 (446)
T ss_pred             HHHHHHHCcCCCCc---cCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCC-----chHHHHH
Confidence            37888998886654   7899999999999999999999999985 5688999999999999987652     1244566


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhhH------hHH
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAHV------QTQ  153 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h~------~~~  153 (488)
                      .|+.....++               ...+..|.||+| ++..+..++++.+++.+... ..........|.      ...
T Consensus       125 lLl~~Gadin---------------~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~  188 (446)
T PHA02946        125 LLVQYGAKIN---------------NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKA  188 (446)
T ss_pred             HHHHcCCCcc---------------cccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCH
Confidence            6664433221               123557889998 55568889999999876321 111111111132      124


Q ss_pred             HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcC--cHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC-hhHHHHHH
Q 011338          154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHG--IVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ-EKIFNLIY  230 (488)
Q Consensus       154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv~~Ll  230 (488)
                      ++++.|++.+.+.+.   +|.+|.||||+|+..|  +.++++.|++ +.+ .+.+|.+|+||||+|++.++ .+++++|+
T Consensus       189 ~~v~~Ll~~Gadin~---~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~~~~~~~~~~Ll  263 (446)
T PHA02946        189 STISWMMKLGISPSK---PDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKTLSPAHLINKLL  263 (446)
T ss_pred             HHHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHhCChHHHHHHHH
Confidence            677788887776655   6889999999999986  8899999985 555 55679999999999999988 58999999


Q ss_pred             hcCCccc----------------cccccc-cCCCCcHHHHHHHhCCCCCcccccc------hHHhhHHHHhHHHHHHhhc
Q 011338          231 TMGAKKN----------------SVATNW-DKAHNNILHQAAFLAPSSQLDRVSG------AALQMQRELQWFKEVESIV  287 (488)
Q Consensus       231 ~~~~~~~----------------~~~~~~-D~~G~TpLhlA~~~~~~~~v~~l~~------~~l~~~~~l~~~~~v~~~~  287 (488)
                      +.+....                ..++.+ +..|+||||+|+..|+.++++.|..      .++.....-...+.++.++
T Consensus       264 ~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll  343 (446)
T PHA02946        264 STSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLL  343 (446)
T ss_pred             hCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHH
Confidence            8864310                012333 3468899999999999998876622      2222222222223333333


Q ss_pred             c-chhHHHhhcCCCCchhhhhHH
Q 011338          288 Q-PKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       288 ~-~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      . ....+.. ++|+||++++.+.
T Consensus       344 ~~ga~~n~~-~~G~t~l~~a~~~  365 (446)
T PHA02946        344 FNHFSVDSV-VNGHTCMSECVRL  365 (446)
T ss_pred             HCCCCCCCc-cccccHHHHHHHc
Confidence            2 2334443 5799999998654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=237.81  Aligned_cols=197  Identities=11%  Similarity=0.016  Sum_probs=155.5

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|.++++.     .+|.+|+||||+|+..|+.++++.|++.+. .++.+  +|+||||+|+..|       ..++++
T Consensus        14 ~~~~Lis~~a~-----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga-~~n~~--d~~TpLh~Aa~~g-------~~eiV~   78 (284)
T PHA02791         14 LKSFLSSKDAF-----KADVHGHSALYYAIADNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLE-------DTKIVK   78 (284)
T ss_pred             HHHHHHhCCCC-----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcC-CCcCC--CCCCHHHHHHHCC-------CHHHHH
Confidence            36788887763     378999999999999999999999999854 34544  4799999999999       456777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .++.....+                ...+..|.||+|.|+..++.++++.|++.+                         
T Consensus        79 lLL~~Gadv----------------n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g-------------------------  117 (284)
T PHA02791         79 ILLFSGMDD----------------SQFDDKGNTALYYAVDSGNMQTVKLFVKKN-------------------------  117 (284)
T ss_pred             HHHHCCCCC----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence            776443222                124567999999999988887777776554                         


Q ss_pred             hhhcccCchhhhhcCc-chHHHHHHHcCcHHHHHHHHHhCCCceeecc-CCCccHHHHHHhcCChhHHHHHHhcCCcccc
Q 011338          161 REISTQGESQFEKVGI-KKVVFIAVKHGIVEFITEIMKHYPDIIWCYD-DYNRHIFSYATLQRQEKIFNLIYTMGAKKNS  238 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g-~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  238 (488)
                         .+.+.   ++..| .||||+|+..|+.+++++|++++++..   | ..|+||||+|+++|+.+++++|++.|++   
T Consensus       118 ---adin~---~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd---  185 (284)
T PHA02791        118 ---WRLMF---YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTS---  185 (284)
T ss_pred             ---CCcCc---cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCC---
Confidence               22221   44456 599999999999999999999877542   3 3589999999999999999999999886   


Q ss_pred             ccccccCCCCcH-HHHHHHhCCCCCcccc
Q 011338          239 VATNWDKAHNNI-LHQAAFLAPSSQLDRV  266 (488)
Q Consensus       239 ~~~~~D~~G~Tp-LhlA~~~~~~~~v~~l  266 (488)
                       +|.+|..|.|| ||+|+..|+.++++.|
T Consensus       186 -~n~~d~~g~t~~L~~Aa~~~~~e~v~lL  213 (284)
T PHA02791        186 -TNTNNSLLFIPDIKLAIDNKDLEMLQAL  213 (284)
T ss_pred             -CCcccCCCCChHHHHHHHcCCHHHHHHH
Confidence             78999999987 9999999998776543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=5.3e-28  Score=247.11  Aligned_cols=248  Identities=13%  Similarity=0.047  Sum_probs=173.5

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|++.+++..+   .|.++.+|||+|+..|+++..+.|++.+ .+++..|++|.||||+||..++.       +..+.
T Consensus       104 i~~Lls~gad~~~---~n~~~~aplh~A~~~~~~s~L~~Ll~~~-~dvnl~de~~~TpLh~A~~~~~~-------E~~k~  172 (929)
T KOG0510|consen  104 IQVLLSYGADTPL---RNLNKNAPLHLAADSGNYSCLKLLLDYG-ADVNLEDENGFTPLHLAARKNKV-------EAKKE  172 (929)
T ss_pred             HHHHHhcCCCCCh---hhhhccCchhhccccchHHHHHHHHHhc-CCccccccCCCchhhHHHhcChH-------HHHHH
Confidence            5677777777666   6778888888888888888888888875 66788888888888888887732       22222


Q ss_pred             Hhhhhhhhhhcc----------------------ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-
Q 011338           82 WIYSFIYIRSAY----------------------ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-  138 (488)
Q Consensus        82 li~~~~~v~~~~----------------------~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-  138 (488)
                      +|....+..+.+                      ....+.......+--.+.+.+|||.|+..++.++++.+|+.+... 
T Consensus       173 Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a  252 (929)
T KOG0510|consen  173 LINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIA  252 (929)
T ss_pred             HHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccc
Confidence            222211111100                      000000000111224567899999999999999999999987432 


Q ss_pred             -hh--hHHH------------HHHhhH----hHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHH-h
Q 011338          139 -IK--HIYE------------VKLAHV----QTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMK-H  198 (488)
Q Consensus       139 -~~--~~~~------------~~~~h~----~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~-~  198 (488)
                       ..  ....            .+..|+    +..+.++.|+..+..++.   ++.++.||||.||..|+.+.|+.||+ .
T Consensus       253 ~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~---kn~d~~spLH~AA~yg~~ntv~rLL~~~  329 (929)
T KOG0510|consen  253 DVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS---KNKDEESPLHFAAIYGRINTVERLLQES  329 (929)
T ss_pred             hhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc---cCCCCCCchHHHHHcccHHHHHHHHhCc
Confidence             11  1111            122253    345677777777776665   67888999999999999999999998 4


Q ss_pred             CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc--cccCCCCcHHHHHHHhCCCCCcccc
Q 011338          199 YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT--NWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       199 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~--~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      +-...+..|..|+||||+|+++||..++++|+++|+..   .+  ..|.+|+||||+|++.|+.++|+.+
T Consensus       330 ~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~---~~~~e~D~dg~TaLH~Aa~~g~~~av~~L  396 (929)
T KOG0510|consen  330 DTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF---LNMSEADSDGNTALHLAAKYGNTSAVQKL  396 (929)
T ss_pred             CccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh---hcccccccCCchhhhHHHHhccHHHHHHH
Confidence            44455666889999999999999999999999998763   33  5599999999999999998887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=248.98  Aligned_cols=255  Identities=13%  Similarity=0.041  Sum_probs=188.3

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .+..|.||||.||..|+.++|++|++++ .+++.+|.+|+||||+||..|+       ...++.++......        
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~g-advn~~d~~g~TpLh~A~~~g~-------~~~v~~Ll~~~~~~--------   96 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRG-HNVNQPDHRDLTPLHIICKEPN-------KLGMKEMIRSINKC--------   96 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCcc-------HhHHHHHHHHHhcc--------
Confidence            4567899999999999999999999985 4688999999999999999994       44566665432211        


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhH-----HHHHHhhHhHHHHHHHHhhhhcccCchhhh
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHI-----YEVKLAHVQTQELLSCVCREISTQGESQFE  172 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----~~~~~~h~~~~~il~~l~~~~~~~~~~~~~  172 (488)
                                ....+.++++.|+..++.++++.++..+.......     ...........++++.|++.+.+.+.   +
T Consensus        97 ----------~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~---~  163 (477)
T PHA02878         97 ----------SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINM---K  163 (477)
T ss_pred             ----------ccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCc---c
Confidence                      11345678999999999999999997643221111     11111111224588888888877665   5


Q ss_pred             hcC-cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          173 KVG-IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       173 ~~~-g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +.. |.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++    ++.+|..|+|||
T Consensus       164 ~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~----in~~d~~g~TpL  238 (477)
T PHA02878        164 DRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS----TDARDKCGNTPL  238 (477)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC----CCCCCCCCCCHH
Confidence            666 999999999999999999999999875 45699999999999999999999999999887    799999999999


Q ss_pred             HHHHHh-CCCCCccccc--ch------------HHhhHHHHhHHHHHHhhc-cchhHHHhhcCCCCchhhhhH
Q 011338          252 HQAAFL-APSSQLDRVS--GA------------ALQMQRELQWFKEVESIV-QPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       252 hlA~~~-~~~~~v~~l~--~~------------~l~~~~~l~~~~~v~~~~-~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      |+|+.. ++.++++.+.  ++            ++...  ....+.++.++ ...+.+.+|.+|.||++++.+
T Consensus       239 h~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        239 HISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999976 5666665441  11            11111  11112233232 235567788899999988764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=250.37  Aligned_cols=256  Identities=13%  Similarity=0.057  Sum_probs=197.4

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcC---CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhh
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDD---IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLA   77 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g---~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~   77 (488)
                      +|++|++.+.+...   ++..|.||||+|+..|   +.++++.|++.+ .+++.+|.+|.||||+|+..|+      ...
T Consensus        29 ~v~~Ll~~ga~vn~---~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G-adin~~~~~g~TpLh~A~~~~~------~~~   98 (471)
T PHA03095         29 EVRRLLAAGADVNF---RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG-ADVNAPERCGFTPLHLYLYNAT------TLD   98 (471)
T ss_pred             HHHHHHHcCCCccc---CCCCCCCHHHHHHHhcCCChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCC------cHH
Confidence            36788888877654   7889999999999999   999999999985 5589999999999999999984      245


Q ss_pred             HHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHH--HHHHHHHHHHHhhccchh-hhhHHHHHHhh-----
Q 011338           78 FWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA--MTKLLHMVWKSLNLFVPA-IKHIYEVKLAH-----  149 (488)
Q Consensus        78 ~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h-----  149 (488)
                      +++.++....++                ...+..|.||+|.|+  ...+.++++.+++.+.+. ..........|     
T Consensus        99 iv~lLl~~ga~i----------------n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~  162 (471)
T PHA03095         99 VIKLLIKAGADV----------------NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS  162 (471)
T ss_pred             HHHHHHHcCCCC----------------CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            666666544322                124557899999999  456789999999887421 11111111112     


Q ss_pred             -HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHc--CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCCh--h
Q 011338          150 -VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKH--GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQE--K  224 (488)
Q Consensus       150 -~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~--G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--~  224 (488)
                       ....++++.+++.+.+...   .|..|.||||+|+..  ++.++++.|++.+.+. ..+|..|+||||+|+..|+.  .
T Consensus       163 ~~~~~~iv~~Ll~~g~~~~~---~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~  238 (471)
T PHA03095        163 RNANVELLRLLIDAGADVYA---VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRS  238 (471)
T ss_pred             CCCCHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHH
Confidence             2246788888888776654   478899999999975  7899999999998875 45699999999999999975  5


Q ss_pred             HHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchh
Q 011338          225 IFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRA  304 (488)
Q Consensus       225 iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~  304 (488)
                      +++.|++.|.+    +|.+|.+|+||||+|+..|+.++++.+.                   -.+.+.+.+|++|+||++
T Consensus       239 ~v~~ll~~g~d----in~~d~~g~TpLh~A~~~~~~~~v~~LL-------------------~~gad~n~~~~~g~tpl~  295 (471)
T PHA03095        239 LVLPLLIAGIS----INARNRYGQTPLHYAAVFNNPRACRRLI-------------------ALGADINAVSSDGNTPLS  295 (471)
T ss_pred             HHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHH-------------------HcCCCCcccCCCCCCHHH
Confidence            78888988876    8999999999999999999866553221                   123556788999999999


Q ss_pred             hhhHH
Q 011338          305 LFSDQ  309 (488)
Q Consensus       305 l~~~~  309 (488)
                      ++...
T Consensus       296 ~A~~~  300 (471)
T PHA03095        296 LMVRN  300 (471)
T ss_pred             HHHHh
Confidence            98653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=9.2e-27  Score=234.07  Aligned_cols=211  Identities=14%  Similarity=0.063  Sum_probs=170.2

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      -.+-.+.|++.|.++.|+.|++.....++..|++|.|+||+||.++       +++.++++|.+...++.          
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNN-------rl~v~r~li~~gadvn~----------  106 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINN-------RLDVARYLISHGADVNA----------  106 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcC-------cHHHHHHHHHcCCCccc----------
Confidence            3556788999999999999998867778888999999999999988       67788888876554432          


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                           .++..+.||||+|+..++..++..|++.|                            ++.+   .+|.+|.+|||
T Consensus       107 -----~gG~l~stPLHWAar~G~~~vv~lLlqhG----------------------------Adpt---~~D~~G~~~lH  150 (600)
T KOG0509|consen  107 -----IGGVLGSTPLHWAARNGHISVVDLLLQHG----------------------------ADPT---LKDKQGLTPLH  150 (600)
T ss_pred             -----cCCCCCCCcchHHHHcCcHHHHHHHHHcC----------------------------CCCc---eecCCCCcHHH
Confidence                 24566788999998888777777766665                            2322   27888999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccccccc-CCCCcHHHHHHHhCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWD-KAHNNILHQAAFLAPS  260 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLhlA~~~~~~  260 (488)
                      .||+.|+.-+|-+||.++.+ .+.+|.+|+||||+|+.+|....++.|++-++.    ++.+| ++|+||||+|+..|+.
T Consensus       151 la~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~----~~~~d~~~g~TpLHwa~~~gN~  225 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS----LLLTDDNHGNTPLHWAVVGGNL  225 (600)
T ss_pred             HHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc----ccccccccCCchHHHHHhcCCc
Confidence            99999999999999999965 567799999999999999999989999998765    56666 9999999999999999


Q ss_pred             CCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          261 SQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       261 ~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      ..+..+..                   ...+.+..|.+|+||++++.++
T Consensus       226 ~~v~Ll~~-------------------g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  226 TAVKLLLE-------------------GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ceEehhhh-------------------cCCcccccccCCCCHHHHHHHh
Confidence            88763211                   1134467788899999998765

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-27  Score=202.54  Aligned_cols=160  Identities=19%  Similarity=0.162  Sum_probs=135.1

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |.||++ .+...++ ++|..||||||+||..|+.++|+.|+.+.+.++|..++.|+|||||||.+|       +      
T Consensus        54 v~fLls-q~nv~~d-dkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~-------r------  118 (226)
T KOG4412|consen   54 VYFLLS-QPNVKPD-DKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKG-------R------  118 (226)
T ss_pred             HHHHHh-cCCCCCC-CccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCC-------h------
Confidence            567777 4445554 468999999999999999999999999966678999999999999999998       1      


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++.+.|++
T Consensus       119 -----------------------------------------------------------------------~eIaqlLle  127 (226)
T KOG4412|consen  119 -----------------------------------------------------------------------LEIAQLLLE  127 (226)
T ss_pred             -----------------------------------------------------------------------hhHHHHHHh
Confidence                                                                                   245555666


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                      .+..++.   +|..|.||||.||..|..+++++|+..++.. +..|+.|+||||.|...|+.++..+|++.|++    +.
T Consensus       128 ~ga~i~~---kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd----~~  199 (226)
T KOG4412|consen  128 KGALIRI---KDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD----TD  199 (226)
T ss_pred             cCCCCcc---cccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHHhccc----ee
Confidence            6555443   7888999999999999999999999998654 55699999999999999999999999999987    78


Q ss_pred             cccCCCCcHHHHHHH
Q 011338          242 NWDKAHNNILHQAAF  256 (488)
Q Consensus       242 ~~D~~G~TpLhlA~~  256 (488)
                      ..|++| ||+-.|+-
T Consensus       200 ~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  200 REDKEG-TALRIACN  213 (226)
T ss_pred             eccccC-chHHHHHH
Confidence            999988 99877654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6.6e-27  Score=240.67  Aligned_cols=229  Identities=10%  Similarity=-0.044  Sum_probs=147.7

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|++.+.+.+.   ++.+|.||||+|+..|+.+++++|++.+. .++..+.+|.||||.|+..|       ..+.++.
T Consensus        18 v~~Ll~~g~~~n~---~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~~t~L~~A~~~g-------~~~~v~~   86 (413)
T PHA02875         18 ARRLLDIGINPNF---EIYDGISPIKLAMKFRDSEAIKLLMKHGA-IPDVKYPDIESELHDAVEEG-------DVKAVEE   86 (413)
T ss_pred             HHHHHHCCCCCCc---cCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccCCCcccHHHHHHHCC-------CHHHHHH
Confidence            4555555554433   44556666666666666666666665532 34445555666666666665       2334444


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                      ++......               .......|.||||.|+..++.++++                            .|++
T Consensus        87 Ll~~~~~~---------------~~~~~~~g~tpL~~A~~~~~~~iv~----------------------------~Ll~  123 (413)
T PHA02875         87 LLDLGKFA---------------DDVFYKDGMTPLHLATILKKLDIMK----------------------------LLIA  123 (413)
T ss_pred             HHHcCCcc---------------cccccCCCCCHHHHHHHhCCHHHHH----------------------------HHHh
Confidence            44321100               0011234556666665555444444                            4444


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                      .+.+.+.   ++.+|.||||+|+..|+.++++.|++++++. +.+|..|+||||+|+..|+.+++++|++.|++    ++
T Consensus       124 ~gad~~~---~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~----~n  195 (413)
T PHA02875        124 RGADPDI---PNTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN----ID  195 (413)
T ss_pred             CCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CC
Confidence            4444333   5677999999999999999999999998874 45699999999999999999999999999987    67


Q ss_pred             cccCCCC-cHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          242 NWDKAHN-NILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       242 ~~D~~G~-TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      ..|.+|. ||+|+|+..|+.++++.+..                ....+......+++|.||+++...
T Consensus       196 ~~~~~~~~t~l~~A~~~~~~~iv~~Ll~----------------~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        196 YFGKNGCVAALCYAIENNKIDIVRLFIK----------------RGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHH----------------CCcCcchHhhcCCCchHHHHHHHh
Confidence            8887774 89999999999877654311                111222233456788999887643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=238.78  Aligned_cols=267  Identities=8%  Similarity=-0.055  Sum_probs=179.0

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |++|+...+.. + ...+.+|.||||.|+..|+.+++++|++.++ .++..+..|.||||+|+..|       ..++++.
T Consensus        17 v~~ll~~~~~~-~-n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga-~~n~~~~~~~t~L~~A~~~~-------~~~iv~~   86 (434)
T PHA02874         17 IEKIIKNKGNC-I-NISVDETTTPLIDAIRSGDAKIVELFIKHGA-DINHINTKIPHPLLTAIKIG-------AHDIIKL   86 (434)
T ss_pred             HHHHHHcCCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcC-------CHHHHHH
Confidence            56677654421 1 1367789999999999999999999999854 57889999999999999999       4567777


Q ss_pred             HhhhhhhhhhccccCCC-------CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----
Q 011338           82 WIYSFIYIRSAYASNNI-------SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----  149 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----  149 (488)
                      ++...............       .....+....+..|.||+|.|+..++.++++.+++.+... ..........|    
T Consensus        87 Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~  166 (434)
T PHA02874         87 LIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIK  166 (434)
T ss_pred             HHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence            76544322110000000       0000112234567899999999999999999998876321 11111111112    


Q ss_pred             HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHH
Q 011338          150 VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLI  229 (488)
Q Consensus       150 ~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  229 (488)
                      .+..++++.|++.+...+.   ++..|.||||+|+..|+.+++++|++.+++. ..++..|+||||.|+..++ +.+++|
T Consensus       167 ~~~~~iv~~Ll~~g~~~n~---~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~L  241 (434)
T PHA02874        167 HNFFDIIKLLLEKGAYANV---KDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELL  241 (434)
T ss_pred             CCcHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHH
Confidence            2335677777777655443   5677888888888888888888888887764 3457788888888888765 455555


Q ss_pred             HhcCCccccccccccCCCCcHHHHHHHhC-CCCCcccccchHHhhHHHHhHHHHHHhhc-cchhHHHhhcCCCCchhhhh
Q 011338          230 YTMGAKKNSVATNWDKAHNNILHQAAFLA-PSSQLDRVSGAALQMQRELQWFKEVESIV-QPKYKEMVNLHYKTPRALFS  307 (488)
Q Consensus       230 l~~~~~~~~~~~~~D~~G~TpLhlA~~~~-~~~~v~~l~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n~~G~tp~~l~~  307 (488)
                      +. +++    ++.+|.+|+||||+|+..+ +.++                    ++.++ ...+.+.+|++|+||++++.
T Consensus       242 l~-~~~----in~~d~~G~TpLh~A~~~~~~~~i--------------------v~~Ll~~gad~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        242 IN-NAS----INDQDIDGSTPLHHAINPPCDIDI--------------------IDILLYHKADISIKDNKGENPIDTAF  296 (434)
T ss_pred             Hc-CCC----CCCcCCCCCCHHHHHHhcCCcHHH--------------------HHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            53 433    6788888888888888765 2222                    22222 34566788899999998875


Q ss_pred             H
Q 011338          308 D  308 (488)
Q Consensus       308 ~  308 (488)
                      +
T Consensus       297 ~  297 (434)
T PHA02874        297 K  297 (434)
T ss_pred             H
Confidence            4

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=1.6e-26  Score=246.05  Aligned_cols=220  Identities=10%  Similarity=-0.023  Sum_probs=154.8

Q ss_pred             CcccccccC-ccccCCCCCCCCchhHHHHHHHc--CCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhh
Q 011338            1 MVRYLYRET-PIAELDPDKGTNGAMLLTSCIID--DIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLA   77 (488)
Q Consensus         1 mv~~L~~~~-~~~~l~~~~d~~G~T~LH~A~~~--g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~   77 (488)
                      +|++|++++ ++.+.  ..|..|.||||.|+..  ++.+++++|++.+ .+++.+|.+|.||||+|++.|+.     ..+
T Consensus       157 iVk~LLe~G~ADIN~--~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G-ADVN~kD~~G~TPLH~Aa~~g~~-----~~e  228 (764)
T PHA02716        157 LIKYMVDVGIVNLNY--VCKKTGYGILHAYLGNMYVDIDILEWLCNNG-VNVNLQNNHLITPLHTYLITGNV-----CAS  228 (764)
T ss_pred             HHHHHHHCCCCCccc--ccCCCCCcHHHHHHHhccCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCC-----CHH
Confidence            478899988 55443  1388899999998754  5679999999985 56899999999999999999831     125


Q ss_pred             HHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHH---HHHHHHHHHHhhccchh-h---hhHHH--HHHh
Q 011338           78 FWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAM---TKLLHMVWKSLNLFVPA-I---KHIYE--VKLA  148 (488)
Q Consensus        78 ~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~---~~~~~~~~~ll~~~~~~-~---~~~~~--~~~~  148 (488)
                      .++.|+....+++                ..+..|.||||.|+.   .++.++++.+++..... .   .....  ....
T Consensus       229 IVklLLe~GADVN----------------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA  292 (764)
T PHA02716        229 VIKKIIELGGDMD----------------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLA  292 (764)
T ss_pred             HHHHHHHcCCCCC----------------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence            6777775544331                134578899987753   45667777776543111 0   00000  0001


Q ss_pred             hHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHH--cCcHHHHHHHHHhCCCceeeccCCCccHHHHHHh-------
Q 011338          149 HVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVK--HGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATL-------  219 (488)
Q Consensus       149 h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~-------  219 (488)
                      ..+..++++.|++.+.+.+.   +|.+|+||||+|+.  .|+.+++++|++.+.+. +.+|..|+||||+|+.       
T Consensus       293 ~~g~leiVklLLe~GAdIN~---kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~  368 (764)
T PHA02716        293 RNIDISVVYSFLQPGVKLHY---KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNI  368 (764)
T ss_pred             HcCCHHHHHHHHhCCCceec---cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhcc
Confidence            12346777888887766554   67788899988764  46788888888888764 4568888899988765       


Q ss_pred             -------cCChhHHHHHHhcCCccccccccccCCCCcHHH
Q 011338          220 -------QRQEKIFNLIYTMGAKKNSVATNWDKAHNNILH  252 (488)
Q Consensus       220 -------~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLh  252 (488)
                             .++.+++++|++.|++    ++.+|..|+||||
T Consensus       369 ld~~~~~~~~~eVVklLL~~GAD----In~kn~~G~TPLh  404 (764)
T PHA02716        369 LDPETDNDIRLDVIQCLISLGAD----ITAVNCLGYTPLT  404 (764)
T ss_pred             ccccccccChHHHHHHHHHCCCC----CCCcCCCCCChHH
Confidence                   3678888888888876    6888888888888

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.7e-27  Score=246.54  Aligned_cols=254  Identities=14%  Similarity=0.052  Sum_probs=198.0

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHH-----HhhCCCCCCCCchh
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDM-----LAQKPSAFPSGTQL   76 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~-----Aa~~g~~~~s~~~l   76 (488)
                      +++++..+   ++...++.+|.||||.|+..|+.+++++|++.+ ..++..+.+|.||||+     |+..+       ..
T Consensus        18 ~~~~~~~~---~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g-~~~~~~~~~~~t~L~~~~~~~a~~~~-------~~   86 (480)
T PHA03100         18 IKYIIMED---DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNG-ADINSSTKNNSTPLHYLSNIKYNLTD-------VK   86 (480)
T ss_pred             HHHHHhcC---ccchhhhcccchhhhhhhccCCHHHHHHHHHcC-CCCCCccccCcCHHHHHHHHHHHhhc-------hH
Confidence            35566544   233347889999999999999999999999985 4578889999999999     99988       45


Q ss_pred             hHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHH--HHHHHHHHHHHhhccchh-hhhHHHHHHhh----
Q 011338           77 AFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA--MTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----  149 (488)
Q Consensus        77 ~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----  149 (488)
                      +.++.++....++                ...+..|.||+|.|+  ..++.++++.+++.+... ..........|    
T Consensus        87 ~iv~~Ll~~ga~i----------------~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~  150 (480)
T PHA03100         87 EIVKLLLEYGANV----------------NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLE  150 (480)
T ss_pred             HHHHHHHHCCCCC----------------CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence            6677666543322                124567899999999  999999999999987432 11111111112    


Q ss_pred             Hh--HHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCC------ccHHHHHHhcC
Q 011338          150 VQ--TQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYN------RHIFSYATLQR  221 (488)
Q Consensus       150 ~~--~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~  221 (488)
                      .+  ..++++.|++.+.+.+.   ++..|.||||+|+..|+.+++++|++.+++.. ..+..|      +||||.|+..|
T Consensus       151 ~~~~~~~iv~~Ll~~g~din~---~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~t~l~~a~~~~  226 (480)
T PHA03100        151 SNKIDLKILKLLIDKGVDINA---KNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN-AGDIETLLFTIFETPLHIAACYN  226 (480)
T ss_pred             cCCChHHHHHHHHHCCCCccc---ccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc-CCCCCCCcHHHHHhHHHHHHHhC
Confidence            23  57888899988877654   56789999999999999999999999998754 457778      99999999999


Q ss_pred             C--hhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCC
Q 011338          222 Q--EKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHY  299 (488)
Q Consensus       222 ~--~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G  299 (488)
                      +  .+++++|++.|++    +|.+|.+|+||||+|+..|+.++++.+.                +   .+.+.+.+|.+|
T Consensus       227 ~~~~~iv~~Ll~~g~d----in~~d~~g~TpL~~A~~~~~~~iv~~Ll----------------~---~gad~n~~d~~g  283 (480)
T PHA03100        227 EITLEVVNYLLSYGVP----INIKDVYGFTPLHYAVYNNNPEFVKYLL----------------D---LGANPNLVNKYG  283 (480)
T ss_pred             cCcHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHH----------------H---cCCCCCccCCCC
Confidence            9  9999999999876    7999999999999999999876653321                0   223567889999


Q ss_pred             CCchhhhhHH
Q 011338          300 KTPRALFSDQ  309 (488)
Q Consensus       300 ~tp~~l~~~~  309 (488)
                      +||++++.+.
T Consensus       284 ~tpl~~A~~~  293 (480)
T PHA03100        284 DTPLHIAILN  293 (480)
T ss_pred             CcHHHHHHHh
Confidence            9999998653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.3e-26  Score=239.58  Aligned_cols=232  Identities=9%  Similarity=0.030  Sum_probs=181.2

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcC-CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDD-IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFW   79 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g-~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~   79 (488)
                      ++++|++.+++.+.   +|.+|.||||+|+..| +.+++++|++.+ ..++.+|.+|+||||+|+...+     .....+
T Consensus        65 iv~~Ll~~Gadin~---~~~~g~TpLh~A~~~~~~~~iv~lLl~~g-a~in~~~~~g~tpLh~a~~~~~-----~~~~iv  135 (471)
T PHA03095         65 IVRLLLEAGADVNA---PERCGFTPLHLYLYNATTLDVIKLLIKAG-ADVNAKDKVGRTPLHVYLSGFN-----INPKVI  135 (471)
T ss_pred             HHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhCCc-----CCHHHH
Confidence            46789999887665   6789999999999999 599999999985 4589999999999999994431     134566


Q ss_pred             HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH--HHHHHHHHhhccchhhhhHHHHH--HhhH-----
Q 011338           80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK--LLHMVWKSLNLFVPAIKHIYEVK--LAHV-----  150 (488)
Q Consensus        80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~--~~h~-----  150 (488)
                      +.++....++                ...+..|.||+|.++..+  ..++++.+++.+...... +..+  ..|.     
T Consensus       136 ~~Ll~~gad~----------------~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        136 RLLLRKGADV----------------NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHHHcCCCC----------------CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHC
Confidence            6666543322                124557899999988765  578899999887432211 1111  1121     


Q ss_pred             -hHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcH--HHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHH
Q 011338          151 -QTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIV--EFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFN  227 (488)
Q Consensus       151 -~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~--~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  227 (488)
                       ...++++.+++.+.+.+.   +|..|.||||+||..|+.  .+++.|++.+.+. +.+|.+|+||||+|+..|+.++++
T Consensus       199 ~~~~~i~~~Ll~~g~~~~~---~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~  274 (471)
T PHA03095        199 KPRARIVRELIRAGCDPAA---TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACR  274 (471)
T ss_pred             CCcHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHH
Confidence             335678888887766554   788999999999999975  6888899888775 556999999999999999999999


Q ss_pred             HHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          228 LIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       228 ~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      +|++.|++    ++.+|.+|+||||+|+..|+.++++.+
T Consensus       275 ~LL~~gad----~n~~~~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        275 RLIALGAD----INAVSSDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             HHHHcCCC----CcccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            99999987    799999999999999999998887654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.93  E-value=7.2e-26  Score=240.98  Aligned_cols=239  Identities=7%  Similarity=-0.040  Sum_probs=166.7

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCc--cHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIF--DIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAF   78 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~--div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~   78 (488)
                      +|++|++++++.+.   +|.+|.||||+|+..|+.  ++|++||+.+ .+++.+|.+|+||||+|+.....    ...++
T Consensus       194 IVklLLe~GADVN~---kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G-ADVN~kD~~G~TPLh~Ai~~a~n----~~~EI  265 (764)
T PHA02716        194 ILEWLCNNGVNVNL---QNNHLITPLHTYLITGNVCASVIKKIIELG-GDMDMKCVNGMSPIMTYIINIDN----INPEI  265 (764)
T ss_pred             HHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhhhc----cCHHH
Confidence            47899999987665   789999999999999965  8999999985 56899999999999998642100    01112


Q ss_pred             HHHHhhh-----------------------hhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHH--HHHHHHHHHhh
Q 011338           79 WKKWIYS-----------------------FIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMT--KLLHMVWKSLN  133 (488)
Q Consensus        79 ~~~li~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~ll~  133 (488)
                      ++.++..                       ...+.+..++...     .....+..|+||||.|+..  ++.++++.|++
T Consensus       266 vkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA-----dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe  340 (764)
T PHA02716        266 TNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV-----KLHYKDSAGRTCLHQYILRHNISTDIIKLLHE  340 (764)
T ss_pred             HHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC-----ceeccCCCCCCHHHHHHHHhCCCchHHHHHHH
Confidence            2222111                       0011111111111     1122466899999998754  46799999998


Q ss_pred             ccchhhhhHHHHHH--hhH------------------hHHHHHHHHhhhhcccCchhhhhcCcchHHHH----HHHcCcH
Q 011338          134 LFVPAIKHIYEVKL--AHV------------------QTQELLSCVCREISTQGESQFEKVGIKKVVFI----AVKHGIV  189 (488)
Q Consensus       134 ~~~~~~~~~~~~~~--~h~------------------~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~----Aa~~G~~  189 (488)
                      .+.. ++..+..+.  .|.                  +..++++.|++.+.+.+.   +|..|+||||.    |...++.
T Consensus       341 ~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~---kn~~G~TPLh~y~~~a~n~~~~  416 (764)
T PHA02716        341 YGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA---VNCLGYTPLTSYICTAQNYMYY  416 (764)
T ss_pred             cCCC-CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC---cCCCCCChHHHHHHHHHhcChH
Confidence            7742 222222211  132                  346888999998877665   78889999994    2335788


Q ss_pred             HHHHHHHHhCCC------------------------------------------------------------ceeeccCC
Q 011338          190 EFITEIMKHYPD------------------------------------------------------------IIWCYDDY  209 (488)
Q Consensus       190 ~~v~~Ll~~~~~------------------------------------------------------------~~~~~d~~  209 (488)
                      +++++|++.+..                                                            ..+..|..
T Consensus       417 dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~  496 (764)
T PHA02716        417 DIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETS  496 (764)
T ss_pred             HHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCC
Confidence            999998875310                                                            01223678


Q ss_pred             CccHHHHHHhcCChh-----HHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338          210 NRHIFSYATLQRQEK-----IFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       210 g~t~Lh~A~~~~~~~-----iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~  260 (488)
                      |+||||+|+.+|+.+     ++++|++.|++    +|.+|++|+||||+|++.|+.
T Consensus       497 G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD----IN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        497 GMTPLHVSIISHTNANIVMDSFVYLLSIQYN----INIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             CCCHHHHHHHcCCccchhHHHHHHHHhCCCC----CcccCCCCCCHHHHHHHcCCc
Confidence            999999999999875     45999999987    899999999999999999986

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=245.40  Aligned_cols=235  Identities=11%  Similarity=-0.003  Sum_probs=143.2

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++.+.+.+.   +|.+|+||||+|+..|+.++|++|++.+ ..++..+.+|.||||+|+..|+       .+.++
T Consensus       160 i~k~Ll~~Gadvn~---~d~~G~TpLh~Aa~~G~~~iv~~LL~~G-ad~n~~~~~g~t~L~~A~~~~~-------~~ivk  228 (682)
T PHA02876        160 IAEMLLEGGADVNA---KDIYCITPIHYAAERGNAKMVNLLLSYG-ADVNIIALDDLSVLECAVDSKN-------IDTIK  228 (682)
T ss_pred             HHHHHHhCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCccCCCCCCHHHHHHHcCC-------HHHHH
Confidence            36788888887665   7889999999999999999999999985 4578899999999999999983       44455


Q ss_pred             HHhhhhhhhh------------------hccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHH-HHHHHHhhccchh-hh
Q 011338           81 KWIYSFIYIR------------------SAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLL-HMVWKSLNLFVPA-IK  140 (488)
Q Consensus        81 ~li~~~~~v~------------------~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~ll~~~~~~-~~  140 (488)
                      .++.....+.                  ....+.     .......+..|.||||.|+..+.. ++++.+++.+..- ..
T Consensus       229 ~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~-----g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~  303 (682)
T PHA02876        229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDA-----GFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK  303 (682)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc
Confidence            4443221110                  000000     011122344677888888776664 4556666554211 11


Q ss_pred             hHHHHHHhhHh-----HHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHc-CcHHHHHHHHHhCCCceeeccCCCccHH
Q 011338          141 HIYEVKLAHVQ-----TQELLSCVCREISTQGESQFEKVGIKKVVFIAVKH-GIVEFITEIMKHYPDIIWCYDDYNRHIF  214 (488)
Q Consensus       141 ~~~~~~~~h~~-----~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~d~~g~t~L  214 (488)
                      ........|..     ..+.++.++..+.+.+.   +|..|.||||+|+.. ++.++++.|++.+.+. +.+|..|+|||
T Consensus       304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~---~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpL  379 (682)
T PHA02876        304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNA---ADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPI  379 (682)
T ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC---cccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHH
Confidence            01111111211     13445555555544433   455666777766664 3566666666665553 34466667777


Q ss_pred             HHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338          215 SYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       215 h~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~  259 (488)
                      |+|+.+|+.+++++|++.|++    ++..|..|.||||+|+..++
T Consensus       380 h~Aa~~~~~~iv~~Ll~~gad----~~~~~~~g~T~Lh~A~~~~~  420 (682)
T PHA02876        380 HYAAVRNNVVIINTLLDYGAD----IEALSQKIGTALHFALCGTN  420 (682)
T ss_pred             HHHHHcCCHHHHHHHHHCCCC----ccccCCCCCchHHHHHHcCC
Confidence            777777777777777666655    46666666666666665443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=245.15  Aligned_cols=255  Identities=11%  Similarity=0.060  Sum_probs=188.8

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCcc----------------------------ccccc
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK----------------------------LAYAQ   52 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~----------------------------~~~~~   52 (488)
                      +|++|++++++...   .+.+|.||||+|+..|+.++++.|++.++.                            .++..
T Consensus       193 iv~~LL~~Gad~n~---~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~  269 (682)
T PHA02876        193 MVNLLLSYGADVNI---IALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSI  269 (682)
T ss_pred             HHHHHHHCCCCcCc---cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            47899999987665   688899999999999999999988875432                            35667


Q ss_pred             cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH-HHHHHHHH
Q 011338           53 DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK-LLHMVWKS  131 (488)
Q Consensus        53 d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l  131 (488)
                      |..|.||||+|+..|+.      ..+++.++.....+                ...+..|.||+|.|+..+ ..+.++.+
T Consensus       270 d~~g~TpLh~Aa~~~~~------~~iv~lLl~~gadi----------------n~~d~~g~TpLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        270 DDCKNTPLHHASQAPSL------SRLVPKLLERGADV----------------NAKNIKGETPLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             CCCCCCHHHHHHhCCCH------HHHHHHHHHCCCCC----------------CCcCCCCCCHHHHHHHhCCCHHHHHHH
Confidence            88899999999998831      12344443322211                124567899999999988 47888888


Q ss_pred             hhccchhhhhHHHH--HHhhH-----hHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCcee
Q 011338          132 LNLFVPAIKHIYEV--KLAHV-----QTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIW  204 (488)
Q Consensus       132 l~~~~~~~~~~~~~--~~~h~-----~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~  204 (488)
                      +..+.. ++..+..  ...|.     ...+++..+++.+.+.+.   +|..|.||||+|+..|+.++++.|++.+++.. 
T Consensus       328 l~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~---~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~-  402 (682)
T PHA02876        328 IMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA---RDYCDKTPIHYAAVRNNVVIINTLLDYGADIE-  402 (682)
T ss_pred             HHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-
Confidence            877632 1111111  11132     124566677777766654   78889999999999999999999999998854 


Q ss_pred             eccCCCccHHHHHHhcCC-hhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC-CCCcccccchHHhhHHHHhHHHH
Q 011338          205 CYDDYNRHIFSYATLQRQ-EKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP-SSQLDRVSGAALQMQRELQWFKE  282 (488)
Q Consensus       205 ~~d~~g~t~Lh~A~~~~~-~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~-~~~v~~l~~~~l~~~~~l~~~~~  282 (488)
                      ..+..|.||||+|+..++ ..++++|++.|++    +|.+|.+|+||||+|+..+. .++++.+.               
T Consensus       403 ~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad----in~~d~~G~TpLh~Aa~~~~~~~iv~lLl---------------  463 (682)
T PHA02876        403 ALSQKIGTALHFALCGTNPYMSVKTLIDRGAN----VNSKNKDLSTPLHYACKKNCKLDVIEMLL---------------  463 (682)
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC----CCcCCCCCChHHHHHHHhCCcHHHHHHHH---------------
Confidence            568899999999997665 5679999999876    79999999999999998763 34432210               


Q ss_pred             HHhhccchhHHHhhcCCCCchhhhhH
Q 011338          283 VESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       283 v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                          -.+.+.+.+|.+|.||+.++.+
T Consensus       464 ----~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        464 ----DNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             ----HCCCCCCCCCCCCCCHHHHHHH
Confidence                1234567889999999988654

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=3.2e-25  Score=184.34  Aligned_cols=109  Identities=36%  Similarity=0.705  Sum_probs=97.5

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHhhccCCCCCcCC---CCcccccCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 011338          318 EKWMKETAESCTVVAALIATIMFSAAFTVPGGYDEY---TGIPLYLHRN-SFMVFIVSDAMSLFSSCTSVLMFLGILTSR  393 (488)
Q Consensus       318 ~~~~~~~~~s~~vva~Liatv~faa~~t~Pgg~~~~---~g~~~l~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~~  393 (488)
                      +||++++++++++||+|||||||+|+++||||++||   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            478999999999999999999999999999999775   6999999888 999999999999999999998877322   


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011338          394 YGEEDFLKSLPRQLIIGLSSLFFSIATMMVTFGVTLVII  432 (488)
Q Consensus       394 ~~~~~~~~~~~~~l~~~~~~l~~s~~~m~~af~~~~~~~  432 (488)
                         .++.+..++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               445555667788999999999999999999999976

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.4e-25  Score=230.36  Aligned_cols=207  Identities=14%  Similarity=0.062  Sum_probs=167.7

Q ss_pred             hHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCC
Q 011338           24 MLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDI  103 (488)
Q Consensus        24 T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~  103 (488)
                      ..|+.|+..|+.+.++.|++.++..++..+.+|.||||.|++.|       ..++++.++.....++             
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g-------~~~iv~~Ll~~Ga~~n-------------   62 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSG-------DAKIVELFIKHGADIN-------------   62 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcC-------CHHHHHHHHHCCCCCC-------------
Confidence            36899999999999999999888888889999999999999999       5677887775543221             


Q ss_pred             CCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHH
Q 011338          104 ERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIA  183 (488)
Q Consensus       104 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~A  183 (488)
                         .....+.+|+|.|+..++.++++.|++.+.......     ......++++.+++.+.+.+.   ++..|.||||+|
T Consensus        63 ---~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~-----~~~~~~~~i~~ll~~g~d~n~---~~~~g~T~Lh~A  131 (434)
T PHA02874         63 ---HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILP-----IPCIEKDMIKTILDCGIDVNI---KDAELKTFLHYA  131 (434)
T ss_pred             ---CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcch-----hccCCHHHHHHHHHCcCCCCC---CCCCCccHHHHH
Confidence               134467899999999999999999999874321000     011224667777777666554   677899999999


Q ss_pred             HHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCc
Q 011338          184 VKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       184 a~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v  263 (488)
                      +..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+..|+.+++
T Consensus       132 ~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~----~n~~~~~g~tpL~~A~~~g~~~iv  206 (434)
T PHA02874        132 IKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY----ANVKDNNGESPLHNAAEYGDYACI  206 (434)
T ss_pred             HHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999998875 45689999999999999999999999999876    688899999999999999998877


Q ss_pred             ccc
Q 011338          264 DRV  266 (488)
Q Consensus       264 ~~l  266 (488)
                      +.+
T Consensus       207 ~~L  209 (434)
T PHA02874        207 KLL  209 (434)
T ss_pred             HHH
Confidence            654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-25  Score=229.18  Aligned_cols=277  Identities=11%  Similarity=-0.021  Sum_probs=181.6

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      ..|..|+||||+|+.....|.++.|++. +.+....|.++.+|||+|+..|       ....++.++...++++..+...
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~n~~~~aplh~A~~~~-------~~s~L~~Ll~~~~dvnl~de~~  154 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLSY-GADTPLRNLNKNAPLHLAADSG-------NYSCLKLLLDYGADVNLEDENG  154 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHhc-CCCCChhhhhccCchhhccccc-------hHHHHHHHHHhcCCccccccCC
Confidence            3688899999999999999999999998 5668899999999999999988       3445555555443332111000


Q ss_pred             C-C----------------CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccch----hhhhHHHHHH--hh----
Q 011338           97 N-I----------------SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVP----AIKHIYEVKL--AH----  149 (488)
Q Consensus        97 ~-~----------------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~--~h----  149 (488)
                      . +                -+...+.+..+..+.+++|.|+..+..++.+..+...+.    .++-....+.  .|    
T Consensus       155 ~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  155 FTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             CchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            0 0                001111222334455555555555555555555542110    0000000111  12    


Q ss_pred             HhHHHHHHHHhhhhcccCchh------------hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHH
Q 011338          150 VQTQELLSCVCREISTQGESQ------------FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYA  217 (488)
Q Consensus       150 ~~~~~il~~l~~~~~~~~~~~------------~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  217 (488)
                      .+..+.++..++.+...+..+            ..|.+|.||||+||++|+.+.++.|+..+.+. ..+++++.||||.|
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~A  313 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFA  313 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHH
Confidence            233556666666555443322            14788999999999999999999999999875 56799999999999


Q ss_pred             HhcCChhHHHHHHh-cCCccccccccccCCCCcHHHHHHHhCCCCCccccc--chHHhh--------------HHHHhHH
Q 011338          218 TLQRQEKIFNLIYT-MGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVS--GAALQM--------------QRELQWF  280 (488)
Q Consensus       218 ~~~~~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~--~~~l~~--------------~~~l~~~  280 (488)
                      +.+|+.+.|+-|++ .+   ..++|+.|-.|+||||+|++.||..+++.+.  |+....              ..-....
T Consensus       314 A~yg~~ntv~rLL~~~~---~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  314 AIYGRINTVERLLQESD---TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             HHcccHHHHHHHHhCcC---ccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence            99999999999999 33   4478999999999999999999988887652  222211              0001112


Q ss_pred             HHHHhhc-cchhHHHhhcCCCCchhh
Q 011338          281 KEVESIV-QPKYKEMVNLHYKTPRAL  305 (488)
Q Consensus       281 ~~v~~~~-~~~~~~~~n~~G~tp~~l  305 (488)
                      ..|+.++ ...+...+|++|++++++
T Consensus       391 ~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  391 SAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHHHcCCceeeccccccccccc
Confidence            2333333 335566778888888875

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2e-25  Score=234.19  Aligned_cols=231  Identities=14%  Similarity=0.098  Sum_probs=186.8

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHH-----HHHcCCccHHHHHHHhCccccccccCCCChHHHHHh--hCCCCCCCC
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTS-----CIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLA--QKPSAFPSG   73 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~-----A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~~s~   73 (488)
                      +|++|++++.+.+.   .+.+|.||||+     |+..|+.++++.|++.+++ ++..|..|.||||+|+  ..|      
T Consensus        50 ivk~Ll~~g~~~~~---~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~A~~~~~~------  119 (480)
T PHA03100         50 VVKILLDNGADINS---STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN-VNAPDNNGITPLLYAISKKSN------  119 (480)
T ss_pred             HHHHHHHcCCCCCC---ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC-CCCCCCCCCchhhHHHhcccC------
Confidence            47889998876554   67889999999     9999999999999999665 5899999999999999  777      


Q ss_pred             chhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH--HHHHHHHHhhccchh-hhhHHHHHHhh-
Q 011338           74 TQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK--LLHMVWKSLNLFVPA-IKHIYEVKLAH-  149 (488)
Q Consensus        74 ~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~-~~~~~~~~~~h-  149 (488)
                       ..++++.++.....+                ...+..|.||+|.|+..+  +.++++.+++.+... ..........| 
T Consensus       120 -~~~iv~~Ll~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~  182 (480)
T PHA03100        120 -SYSIVEYLLDNGANV----------------NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI  182 (480)
T ss_pred             -hHHHHHHHHHcCCCC----------------CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence             466777777543322                124567899999999999  999999999987431 11111111123 


Q ss_pred             ---HhHHHHHHHHhhhhcccCchhhhhcCc------chHHHHHHHcCc--HHHHHHHHHhCCCceeeccCCCccHHHHHH
Q 011338          150 ---VQTQELLSCVCREISTQGESQFEKVGI------KKVVFIAVKHGI--VEFITEIMKHYPDIIWCYDDYNRHIFSYAT  218 (488)
Q Consensus       150 ---~~~~~il~~l~~~~~~~~~~~~~~~~g------~tpLh~Aa~~G~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  218 (488)
                         .+..++++.|++.+.+.+.   .+..|      .||||.|+..|+  .++++.|++.+.+. +.+|..|+||||+|+
T Consensus       183 A~~~~~~~iv~~Ll~~ga~~~~---~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~TpL~~A~  258 (480)
T PHA03100        183 AVEKGNIDVIKFLLDNGADINA---GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTPLHYAV  258 (480)
T ss_pred             HHHhCCHHHHHHHHHcCCCccC---CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence               2346788888888776554   45566      899999999999  99999999998774 456999999999999


Q ss_pred             hcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          219 LQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       219 ~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      .+|+.+++++|++.|++    ++.+|.+|+||||+|+..++.++++.+
T Consensus       259 ~~~~~~iv~~Ll~~gad----~n~~d~~g~tpl~~A~~~~~~~iv~~L  302 (480)
T PHA03100        259 YNNNPEFVKYLLDLGAN----PNLVNKYGDTPLHIAILNNNKEIFKLL  302 (480)
T ss_pred             HcCCHHHHHHHHHcCCC----CCccCCCCCcHHHHHHHhCCHHHHHHH
Confidence            99999999999999986    799999999999999999998877655

>PHA02791 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.7e-25  Score=214.28  Aligned_cols=183  Identities=13%  Similarity=0.105  Sum_probs=146.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|+..+++.+.     .+|+||||+|+..|+.++++.|++.+ ..++.+|.+|+||||+|+..|       ..++++
T Consensus        45 iv~~Ll~~ga~~n~-----~d~~TpLh~Aa~~g~~eiV~lLL~~G-advn~~d~~G~TpLh~Aa~~g-------~~eivk  111 (284)
T PHA02791         45 LVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSG-MDDSQFDDKGNTALYYAVDSG-------NMQTVK  111 (284)
T ss_pred             HHHHHHHCcCCCcC-----CCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence            36788888775443     24789999999999999999999874 557899999999999999999       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCch-hhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAE-HKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV  159 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l  159 (488)
                      .|+....+++                ..+..| .||+|.|+..++.++++.|++.++                       
T Consensus       112 ~Ll~~gadin----------------~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~-----------------------  152 (284)
T PHA02791        112 LFVKKNWRLM----------------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-----------------------  152 (284)
T ss_pred             HHHHCCCCcC----------------ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC-----------------------
Confidence            7775543221                122333 689999999988888887765431                       


Q ss_pred             hhhhcccCchhhhh-cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccH-HHHHHhcCChhHHHHHHhcCCccc
Q 011338          160 CREISTQGESQFEK-VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHI-FSYATLQRQEKIFNLIYTMGAKKN  237 (488)
Q Consensus       160 ~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~  237 (488)
                           ..     .| ..|.||||+|++.|+.++++.|++++++. +..|..|.|| ||+|+.+|+.+++++|++.|++  
T Consensus       153 -----~~-----~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~--  219 (284)
T PHA02791        153 -----ST-----FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN--  219 (284)
T ss_pred             -----cc-----cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC--
Confidence                 00     11 24789999999999999999999999875 4568889987 9999999999999999999987  


Q ss_pred             cccccccCCCCcHH
Q 011338          238 SVATNWDKAHNNIL  251 (488)
Q Consensus       238 ~~~~~~D~~G~TpL  251 (488)
                        +|.+|.+| |||
T Consensus       220 --in~~~~~~-~~l  230 (284)
T PHA02791        220 --IYSVNLEN-VLL  230 (284)
T ss_pred             --CccCcccC-ccC
Confidence              79999955 777

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.6e-25  Score=226.35  Aligned_cols=185  Identities=12%  Similarity=-0.064  Sum_probs=151.6

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      .+++||.|+..|+.+++++|++.+ ..++.++.+|.||||+|+..|       ..+.++.++......            
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~~-------~~~~v~~Ll~~ga~~------------   61 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIG-INPNFEIYDGISPIKLAMKFR-------DSEAIKLLMKHGAIP------------   61 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcC-------CHHHHHHHHhCCCCc------------
Confidence            478999999999999999999985 457888999999999999998       456677666433211            


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                          ......+.+|+|.|+..++.++++.+++.+..                            .+  ...+.+|.||||
T Consensus        62 ----~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~----------------------------~~--~~~~~~g~tpL~  107 (413)
T PHA02875         62 ----DVKYPDIESELHDAVEEGDVKAVEELLDLGKF----------------------------AD--DVFYKDGMTPLH  107 (413)
T ss_pred             ----cccCCCcccHHHHHHHCCCHHHHHHHHHcCCc----------------------------cc--ccccCCCCCHHH
Confidence                11235678999999999888888887765521                            11  113456999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSS  261 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~  261 (488)
                      +|+..|+.+++++|++.+++. ...|..|+||||+|+..|+.+++++|++.|++    ++.+|..|+||||+|+..|+.+
T Consensus       108 ~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        108 LATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC----LDIEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             HHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999875 45689999999999999999999999999876    7899999999999999999877


Q ss_pred             Cccc
Q 011338          262 QLDR  265 (488)
Q Consensus       262 ~v~~  265 (488)
                      +++.
T Consensus       183 iv~~  186 (413)
T PHA02875        183 ICKM  186 (413)
T ss_pred             HHHH
Confidence            6543

>PHA02946 ankyin-like protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=221.17  Aligned_cols=212  Identities=10%  Similarity=0.022  Sum_probs=138.7

Q ss_pred             chhHHHHHHH--cCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338           22 GAMLLTSCII--DDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS   99 (488)
Q Consensus        22 G~T~LH~A~~--~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~   99 (488)
                      +.++||.++.  .++.+++++|++++. +++.+|.+|+||||+||+.|       ..++++.|+....++          
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Ga-dvn~~d~~G~TpLh~Aa~~g-------~~eiv~lLL~~GAdi----------   98 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGY-SPNETDDDGNYPLHIASKIN-------NNRIVAMLLTHGADP----------   98 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcC-CCCccCCCCCCHHHHHHHcC-------CHHHHHHHHHCcCCC----------
Confidence            4699998764  345689999999854 58999999999999999999       456777777554322          


Q ss_pred             CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchH
Q 011338          100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV  179 (488)
Q Consensus       100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tp  179 (488)
                            ...+..|.||||.|+..+.                          ...++++.|++.+.+.+.  ..|.+|.||
T Consensus        99 ------n~~d~~g~TpLh~A~~~~~--------------------------~~~e~v~lLl~~Gadin~--~~d~~g~tp  144 (446)
T PHA02946         99 ------NACDKQHKTPLYYLSGTDD--------------------------EVIERINLLVQYGAKINN--SVDEEGCGP  144 (446)
T ss_pred             ------CCCCCCCCCHHHHHHHcCC--------------------------chHHHHHHHHHcCCCccc--ccCCCCCcH
Confidence                  1246688999998864321                          112344444444444332  135567777


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC--hhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ--EKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~--~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      || ||..|+.++++.|++.+.+. +.+|..|+||||+|+..++  .+++++|++.|++    ++.+|.+|+||||+|+..
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad----in~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS----PSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHc
Confidence            76 55667777777777776554 3457777777777766444  4677777777765    677777777777777776


Q ss_pred             CCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          258 APSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       258 ~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      +...+                  +.++.+++..+.+.+|++|+||++++.+.
T Consensus       219 ~~~~~------------------~iv~lLl~gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        219 TVKNV------------------DIINLLLPSTDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CCCcH------------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            53210                  11222223345666777777777776543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.5e-24  Score=225.89  Aligned_cols=232  Identities=14%  Similarity=0.078  Sum_probs=179.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHc-----CCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCch
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIID-----DIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQ   75 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~-----g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~   75 (488)
                      +|++|++.+++.+.   +|.+|.||||.|+.+     ++.+++++|++.+ .+++.+|.+|+||||+|+..+..    ..
T Consensus        53 iv~~Ll~~Gadvn~---~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G-adiN~~d~~G~TpLh~a~~~~~~----~~  124 (489)
T PHA02798         53 IVKLFINLGANVNG---LDNEYSTPLCTILSNIKDYKHMLDIVKILIENG-ADINKKNSDGETPLYCLLSNGYI----NN  124 (489)
T ss_pred             HHHHHHHCCCCCCC---CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC-CCCCCCCCCcCcHHHHHHHcCCc----Ch
Confidence            47889999987665   789999999999864     6789999999985 45899999999999999998631    13


Q ss_pred             hhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHH---HHHHHHHhhccchhhhhHH-HH--HHhh
Q 011338           76 LAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKL---LHMVWKSLNLFVPAIKHIY-EV--KLAH  149 (488)
Q Consensus        76 l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~-~~--~~~h  149 (488)
                      .++++.++....++                ...+..|.||+|.++..++   .++++.|++.|.+. +... ..  ...|
T Consensus       125 ~~iv~~Ll~~Gadv----------------n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh  187 (489)
T PHA02798        125 LEILLFMIENGADT----------------TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLH  187 (489)
T ss_pred             HHHHHHHHHcCCCc----------------cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHH
Confidence            55666666544322                1245678999999999887   89999999887432 1110 00  1112


Q ss_pred             --------HhHHHHHHHHhhhhcccCchhhhhcCcchHHH-------HHHHcCcHHHHHHHHHhCCCceeeccCCCccHH
Q 011338          150 --------VQTQELLSCVCREISTQGESQFEKVGIKKVVF-------IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIF  214 (488)
Q Consensus       150 --------~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh-------~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~L  214 (488)
                              ....++++.|++.+...+.   .+..|.++++       .+...++.+++.+|+. +.+ ++.+|..|+|||
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~---~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL  262 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGFIINK---ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPL  262 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCCCccc---CCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHH
Confidence                    2246889999998876654   4556777766       3556788899988776 455 567799999999


Q ss_pred             HHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          215 SYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       215 h~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      |+|+.+|+.+++++|++.|++    +|.+|.+|+||||+|+..++.++++.+
T Consensus       263 ~~A~~~~~~~~v~~LL~~GAd----in~~d~~G~TpL~~A~~~~~~~iv~~l  310 (489)
T PHA02798        263 YYSVSHNNRKIFEYLLQLGGD----INIITELGNTCLFTAFENESKFIFNSI  310 (489)
T ss_pred             HHHHHcCcHHHHHHHHHcCCc----ccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            999999999999999999987    799999999999999999998777554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.4e-24  Score=223.09  Aligned_cols=237  Identities=13%  Similarity=0.034  Sum_probs=155.6

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcC--CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDD--IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAF   78 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g--~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~   78 (488)
                      +|++|++.+.+.+.   + .+|.||||.++..+  +.++|++||+.+ .+++.++ .|.||||.|+..+... +....++
T Consensus        18 ~v~~LL~~GadvN~---~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G-Advn~~~-~~~tpL~~a~~~~~~~-~~~~~~i   90 (494)
T PHA02989         18 ALEFLLRTGFDVNE---E-YRGNSILLLYLKRKDVKIKIVKLLIDNG-ADVNYKG-YIETPLCAVLRNREIT-SNKIKKI   90 (494)
T ss_pred             HHHHHHHcCCCccc---c-cCCCCHHHHHHhcCCCChHHHHHHHHcC-CCccCCC-CCCCcHHHHHhccCcc-hhhHHHH
Confidence            36788888876543   3 45788887655443  678898888874 4567665 5688998887765211 1223445


Q ss_pred             HHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHH---HHHHHHHHHhhccchh--hhhHHHHHHhhH---
Q 011338           79 WKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMT---KLLHMVWKSLNLFVPA--IKHIYEVKLAHV---  150 (488)
Q Consensus        79 ~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~--~~~~~~~~~~h~---  150 (488)
                      ++.++....+++                ..+..|.||||.|+..   ++.++++.|++.|.+-  ..........|.   
T Consensus        91 v~~Ll~~Gadin----------------~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         91 VKLLLKFGADIN----------------LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             HHHHHHCCCCCC----------------CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH
Confidence            666665443321                1334566777766544   4567777777766322  111111122232   


Q ss_pred             ---hHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcC----cHHHHHHHHHhCCCc---------------------
Q 011338          151 ---QTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHG----IVEFITEIMKHYPDI---------------------  202 (488)
Q Consensus       151 ---~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G----~~~~v~~Ll~~~~~~---------------------  202 (488)
                         ...++++.|++.+.+.+..  .+..|.||||+|++.+    +.+++++|++.+.+.                     
T Consensus       155 ~~~~~~~iv~~Ll~~Gadi~~~--~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~  232 (494)
T PHA02989        155 SFSVKKDVIKILLSFGVNLFEK--TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKIL  232 (494)
T ss_pred             hccCCHHHHHHHHHcCCCcccc--ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhh
Confidence               2346667777666554431  3456777777776543    677777777665442                     


Q ss_pred             ----------------eeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          203 ----------------IWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       203 ----------------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                                      .+.+|..|+||||+|+..|+.+++++|++.|++    +|.+|.+|+||||+|+..|+.++++.+
T Consensus       233 ~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad----in~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        233 SKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD----IYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             cccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                            234577899999999999999999999999987    799999999999999999998877654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2e-23  Score=218.65  Aligned_cols=230  Identities=10%  Similarity=-0.026  Sum_probs=169.8

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++++.+.   +|.+|.||||+||..|+.++++.|++..... .  ...+.+|||.|+..++       .++++
T Consensus        52 ~vk~Ll~~gadvn~---~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~--~~~~~~~l~~a~~~~~-------~ei~~  118 (477)
T PHA02878         52 VVKSLLTRGHNVNQ---PDHRDLTPLHIICKEPNKLGMKEMIRSINKC-S--VFYTLVAIKDAFNNRN-------VEIFK  118 (477)
T ss_pred             HHHHHHHCCCCCCC---CCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-c--cccchhhHHHHHHcCC-------HHHHH
Confidence            47899999876554   7899999999999999999999999885432 1  2568999999999883       33444


Q ss_pred             HHhhhhhh----------------------hhhccccCCCCCCCCCCCCCCCc-hhhhhHHHHHHHHHHHHHHHhhccch
Q 011338           81 KWIYSFIY----------------------IRSAYASNNISHGDIERPHQGPA-EHKNFFTRAMTKLLHMVWKSLNLFVP  137 (488)
Q Consensus        81 ~li~~~~~----------------------v~~~~~~~~~~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~ll~~~~~  137 (488)
                      .++.....                      +.+..++..     .+....+.. |.||||.|+..++.++++.+++.+..
T Consensus       119 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g-----adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        119 IILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG-----ADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC-----CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence            44322100                      111111111     111123344 89999999999999999999998743


Q ss_pred             hhhhHHHH--HHhh----HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHc-CcHHHHHHHHHhCCCceeeccCCC
Q 011338          138 AIKHIYEV--KLAH----VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKH-GIVEFITEIMKHYPDIIWCYDDYN  210 (488)
Q Consensus       138 ~~~~~~~~--~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~d~~g  210 (488)
                       ++..+..  ...|    .+..++++.|++.+.+.+.   +|..|.||||+|+.. ++.++++.|++++++.....+..|
T Consensus       194 -~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~---~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g  269 (477)
T PHA02878        194 -VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA---RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG  269 (477)
T ss_pred             -CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCC
Confidence             1111111  1223    2346788888888877665   688899999999976 799999999999988654433489


Q ss_pred             ccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhC
Q 011338          211 RHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLA  258 (488)
Q Consensus       211 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~  258 (488)
                      +||||+|  .++.+++++|++.|++    +|.+|.+|+||||+|+..+
T Consensus       270 ~TpLh~A--~~~~~~v~~Ll~~gad----in~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        270 LTALHSS--IKSERKLKLLLEYGAD----INSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCHHHHH--ccCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHHc
Confidence            9999999  5778999999999987    7999999999999999864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=3.3e-23  Score=192.35  Aligned_cols=183  Identities=13%  Similarity=0.047  Sum_probs=142.8

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI   98 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~   98 (488)
                      .+.+.||||.|+..|+.++|+.|++.    ++..|..|.||||+|+..+.     ...++++.++....+++.       
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~-----~~~eiv~~Ll~~gadvn~-------   81 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDK-----VNVEILKFLIENGADVNF-------   81 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCC-----CCHHHHHHHHHCCCCCCc-------
Confidence            45679999999999999999999975    56788999999999998651     135677877765543321       


Q ss_pred             CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcch
Q 011338           99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKK  178 (488)
Q Consensus        99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~t  178 (488)
                              .....|.||+|.++..+                         +....++++.|++.+.+++.   +|.+|.|
T Consensus        82 --------~~~~~g~TpLh~a~~~~-------------------------~~~~~eiv~~Ll~~gadin~---~d~~G~T  125 (209)
T PHA02859         82 --------KTRDNNLSALHHYLSFN-------------------------KNVEPEILKILIDSGSSITE---EDEDGKN  125 (209)
T ss_pred             --------cCCCCCCCHHHHHHHhC-------------------------ccccHHHHHHHHHCCCCCCC---cCCCCCC
Confidence                    11246789999875421                         11124566666666666554   7889999


Q ss_pred             HHHHHHH--cCcHHHHHHHHHhCCCceeeccCCCccHHHH-HHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHH
Q 011338          179 VVFIAVK--HGIVEFITEIMKHYPDIIWCYDDYNRHIFSY-ATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAA  255 (488)
Q Consensus       179 pLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~  255 (488)
                      |||+|+.  .|+.+++++|++.+.+.. .+|.+|+||||. |+..++.+++++|++.|++    ++.+|..|.||||+|.
T Consensus       126 pLh~a~~~~~~~~~iv~~Li~~gadin-~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad----i~~~d~~g~tpl~la~  200 (209)
T PHA02859        126 LLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNILYSYILFHSDKKIFDFLTSLGID----INETNKSGYNCYDLIK  200 (209)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCcc-cccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHh
Confidence            9999876  578999999999998754 569999999996 5678899999999999986    7999999999999998


Q ss_pred             HhC
Q 011338          256 FLA  258 (488)
Q Consensus       256 ~~~  258 (488)
                      ..+
T Consensus       201 ~~~  203 (209)
T PHA02859        201 FRN  203 (209)
T ss_pred             hhh
Confidence            764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=6.2e-24  Score=230.23  Aligned_cols=151  Identities=16%  Similarity=0.054  Sum_probs=122.9

Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHHhhccchhh-hhHHHHHHhh----HhHHHHHHHHhhhhcccCchhhhhcCcchHHHH
Q 011338          108 QGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI-KHIYEVKLAH----VQTQELLSCVCREISTQGESQFEKVGIKKVVFI  182 (488)
Q Consensus       108 ~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~  182 (488)
                      ..+.|-|+||.+...++.+++..+++...... .........|    .+.+.....+++.+...+.   ++.+|.||||.
T Consensus       470 ~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~---~~~r~~TpLh~  546 (1143)
T KOG4177|consen  470 VSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL---RTGRGYTPLHV  546 (1143)
T ss_pred             hccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh---hcccccchHHH
Confidence            46689999999999999999999888662211 1111111112    3445666777777666554   78889999999


Q ss_pred             HHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCC
Q 011338          183 AVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQ  262 (488)
Q Consensus       183 Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~  262 (488)
                      ||..|+.++|++|++++.++. .+|+.|+||||.||..|+.+++++|+++|++    +|..|.+|.||||.|+..|+.++
T Consensus       547 A~~~g~v~~VkfLLe~gAdv~-ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----vna~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  547 AVHYGNVDLVKFLLEHGADVN-AKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----VNAADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             HHhcCCchHHHHhhhCCcccc-ccCCCCCChhhHHHHcChHHHHHHHHHcCCC----CCcccccCcchhHHHHHhcccch
Confidence            999999999999999999865 4589999999999999999999999999987    89999999999999999999988


Q ss_pred             cccc
Q 011338          263 LDRV  266 (488)
Q Consensus       263 v~~l  266 (488)
                      ++.+
T Consensus       622 ~k~l  625 (1143)
T KOG4177|consen  622 VKLL  625 (1143)
T ss_pred             hhHH
Confidence            7654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=5.8e-23  Score=215.56  Aligned_cols=234  Identities=11%  Similarity=-0.025  Sum_probs=144.7

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHc--CCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIID--DIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFW   79 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~--g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~   79 (488)
                      |+.|++.....     ...+|.|+++.+...  ++.++|++|++.+. +++.+|..|.||||.|+..-..+  ....+++
T Consensus        21 v~~ll~~~~~~-----~~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Ga-dvn~~d~~g~TpL~~~~~n~~~~--~~~~~iv   92 (489)
T PHA02798         21 VKLLIKSCNPN-----EIVNEYSIFQKYLQRDSPSTDIVKLFINLGA-NVNGLDNEYSTPLCTILSNIKDY--KHMLDIV   92 (489)
T ss_pred             HHHHHhcCChh-----hhcccchHHHHHHhCCCCCHHHHHHHHHCCC-CCCCCCCCCCChHHHHHHhHHhH--HhHHHHH
Confidence            56677654322     224577877755444  47899999999855 68999999999999998651000  0134566


Q ss_pred             HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH---HHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338           80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK---LLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL  156 (488)
Q Consensus        80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il  156 (488)
                      +.++....++                ...+..|.||+|.|+..+   +.++++.+++.|                     
T Consensus        93 ~~Ll~~Gadi----------------N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G---------------------  135 (489)
T PHA02798         93 KILIENGADI----------------NKKNSDGETPLYCLLSNGYINNLEILLFMIENG---------------------  135 (489)
T ss_pred             HHHHHCCCCC----------------CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC---------------------
Confidence            6666544332                124567899999997653   445555555444                     


Q ss_pred             HHHhhhhcccCchhhhhcCcchHHHHHHHcCc---HHHHHHHHHhCCCceeeccCCCccHHHHHHhc----CChhHHHHH
Q 011338          157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGI---VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQ----RQEKIFNLI  229 (488)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~----~~~~iv~~L  229 (488)
                             .+.+.   +|.+|.||||+|++.|+   .+++++|++.+.+.....+..|.||||.++.+    ++.+++++|
T Consensus       136 -------advn~---~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~L  205 (489)
T PHA02798        136 -------ADTTL---LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF  205 (489)
T ss_pred             -------CCccc---cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHH
Confidence                   33322   34455555555555555   55555555555554332233455555555433    245555555


Q ss_pred             HhcCCccc-----------------------------------cccccccCCCCcHHHHHHHhCCCCCcccccchHHhhH
Q 011338          230 YTMGAKKN-----------------------------------SVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQ  274 (488)
Q Consensus       230 l~~~~~~~-----------------------------------~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~  274 (488)
                      ++.|++..                                   ..+|.+|..|+||||+|+..|+.++++.|.       
T Consensus       206 i~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL-------  278 (489)
T PHA02798        206 VDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLL-------  278 (489)
T ss_pred             HHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHH-------
Confidence            55543211                                   137889999999999999999866553321       


Q ss_pred             HHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          275 RELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       275 ~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                                  -...+.+.+|++|+||++++.+.
T Consensus       279 ------------~~GAdin~~d~~G~TpL~~A~~~  301 (489)
T PHA02798        279 ------------QLGGDINIITELGNTCLFTAFEN  301 (489)
T ss_pred             ------------HcCCcccccCCCCCcHHHHHHHc
Confidence                        12356788999999999998654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.89  E-value=3.1e-23  Score=208.71  Aligned_cols=182  Identities=12%  Similarity=0.078  Sum_probs=148.7

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCcccccccc-CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQD-NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      +.|++|.|+||+|+.+++.|++++||++++ ++|..+ .-|.||||+||++|       ++..++.|+.+..+..     
T Consensus        73 ~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-dvn~~gG~l~stPLHWAar~G-------~~~vv~lLlqhGAdpt-----  139 (600)
T KOG0509|consen   73 NPDREGVTLLHWAAINNRLDVARYLISHGA-DVNAIGGVLGSTPLHWAARNG-------HISVVDLLLQHGADPT-----  139 (600)
T ss_pred             CCCcCCccceeHHHHcCcHHHHHHHHHcCC-CccccCCCCCCCcchHHHHcC-------cHHHHHHHHHcCCCCc-----
Confidence            468899999999999999999999999955 578887 55999999999999       5778888887655331     


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG  175 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~  175 (488)
                                 -.+..|.+++|.|+..++.-.                            +-+++.++.+.|.   +|.+
T Consensus       140 -----------~~D~~G~~~lHla~~~~~~~~----------------------------vayll~~~~d~d~---~D~~  177 (600)
T KOG0509|consen  140 -----------LKDKQGLTPLHLAAQFGHTAL----------------------------VAYLLSKGADIDL---RDNN  177 (600)
T ss_pred             -----------eecCCCCcHHHHHHHhCchHH----------------------------HHHHHHhcccCCC---cCCC
Confidence                       145578899999987665543                            4444444433333   8999


Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHH
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAA  255 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~  255 (488)
                      |+||||+||.+|+...++.|++.++......|..|.||||+|+..|+.++++++++.+.+    .+.+|.+|.||+.+|.
T Consensus       178 grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~----~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  178 GRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD----LDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             CCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc----ccccccCCCCHHHHHH
Confidence            999999999999999999999999887666569999999999999999999966655554    6889999999999998


Q ss_pred             Hh
Q 011338          256 FL  257 (488)
Q Consensus       256 ~~  257 (488)
                      ..
T Consensus       254 ~~  255 (600)
T KOG0509|consen  254 ER  255 (600)
T ss_pred             Hh
Confidence            76

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=5.3e-22  Score=207.74  Aligned_cols=130  Identities=11%  Similarity=0.023  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCc----HHHHHHHHHhCCC-ceeeccCCCccHHHH---HHhcC--
Q 011338          152 TQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGI----VEFITEIMKHYPD-IIWCYDDYNRHIFSY---ATLQR--  221 (488)
Q Consensus       152 ~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~----~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~---A~~~~--  221 (488)
                      ..++++.|++++++++.   . ..|.||||+|+..++    .|++++|++++++ ..+..|.+|+||||.   |...+  
T Consensus       358 ~ieIvelLIs~GAdIN~---k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~  433 (672)
T PHA02730        358 SIPILRCMLDNGATMDK---T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCG  433 (672)
T ss_pred             cHHHHHHHHHCCCCCCc---C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccc
Confidence            45777888888887774   2 579999999999885    8999999999874 355668999999994   44332  


Q ss_pred             -------ChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHH
Q 011338          222 -------QEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEM  294 (488)
Q Consensus       222 -------~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~  294 (488)
                             ..+++++|+..|++    +|.+|..|+||||+|+..++.++++.+.                   -.+...+.
T Consensus       434 ~~~~e~~~~~ivk~LIs~GAD----INakD~~G~TPLh~Aa~~~~~eive~LI-------------------~~GAdIN~  490 (672)
T PHA02730        434 YHCYETILIDVFDILSKYMDD----IDMIDNENKTLLYYAVDVNNIQFARRLL-------------------EYGASVNT  490 (672)
T ss_pred             ccccchhHHHHHHHHHhcccc----hhccCCCCCCHHHHHHHhCCHHHHHHHH-------------------HCCCCCCC
Confidence                   22569999999987    8999999999999999998865443220                   12345667


Q ss_pred             hhc-CCCCchhhhhH
Q 011338          295 VNL-HYKTPRALFSD  308 (488)
Q Consensus       295 ~n~-~G~tp~~l~~~  308 (488)
                      +|+ .|.||++.+..
T Consensus       491 ~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        491 TSRSIINTAIQKSSY  505 (672)
T ss_pred             CCCcCCcCHHHHHHH
Confidence            776 59999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=5.7e-22  Score=212.28  Aligned_cols=193  Identities=8%  Similarity=0.033  Sum_probs=136.0

Q ss_pred             CCCCCchhHHHHHHHc---CCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           17 DKGTNGAMLLTSCIID---DIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~---g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      .+|.+|+||||+|+..   |+.++|++||+.+ ..++.+|.+|+||||.|+..|+...   ....++.++...       
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g-a~v~~~~~~g~TpL~~Aa~~g~~~v---~~~~~~~Ll~~~-------   95 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG-TNPLHKNWRQLTPLEEYTNSRHVKV---NKDIAMALLEAT-------   95 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC-CCccccCCCCCCHHHHHHHcCChhH---HHHHHHHHHhcc-------
Confidence            4699999999998665   8899999999985 5578899999999999999984210   001112222100       


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK  173 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~  173 (488)
                         ..  .+      -++.+.+++.|+..++.                            ++++.|++.+.+.+.   +|
T Consensus        96 ---~~--~n------~~~~~~~~~~a~~~~~~----------------------------e~vk~Ll~~Gadin~---~d  133 (661)
T PHA02917         96 ---GY--SN------INDFNIFSYMKSKNVDV----------------------------DLIKVLVEHGFDLSV---KC  133 (661)
T ss_pred             ---CC--CC------CCCcchHHHHHhhcCCH----------------------------HHHHHHHHcCCCCCc---cC
Confidence               00  00      01122444555444444                            455555555555554   67


Q ss_pred             cCcchHHHHH--HHcCcHHHHHHHHHhCCCceee--ccCCC-----------ccHHHHHHh-----------cCChhHHH
Q 011338          174 VGIKKVVFIA--VKHGIVEFITEIMKHYPDIIWC--YDDYN-----------RHIFSYATL-----------QRQEKIFN  227 (488)
Q Consensus       174 ~~g~tpLh~A--a~~G~~~~v~~Ll~~~~~~~~~--~d~~g-----------~t~Lh~A~~-----------~~~~~iv~  227 (488)
                      .+|+||||.|  +..|+.|++++|++++++....  .+..|           +||||+|+.           +++.++++
T Consensus       134 ~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~  213 (661)
T PHA02917        134 ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVK  213 (661)
T ss_pred             CCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHH
Confidence            8899999964  4578999999999999876422  12234           599999986           56899999


Q ss_pred             HHHhcCCccccccccccCCCCcHHHHHHHhCCC--CCcccc
Q 011338          228 LIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS--SQLDRV  266 (488)
Q Consensus       228 ~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~--~~v~~l  266 (488)
                      +|++.|++    +|.+|.+|+||||+|+..|+.  ++|+.|
T Consensus       214 ~Li~~Gad----vn~~d~~G~TpLh~A~~~g~~~~eivk~L  250 (661)
T PHA02917        214 CLINHGIK----PSSIDKNYCTALQYYIKSSHIDIDIVKLL  250 (661)
T ss_pred             HHHHCCCC----cccCCCCCCcHHHHHHHcCCCcHHHHHHH
Confidence            99999987    899999999999999999986  355433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=2.1e-22  Score=194.83  Aligned_cols=190  Identities=14%  Similarity=0.084  Sum_probs=156.5

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccc--------cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQ--------DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~--------d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      .+.+|.|||-+|+++||.++|++|++++...+...        +-+|-+||-.|+..|       ++++++.++....++
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAG-------Hl~vVk~L~~~ga~V  110 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAG-------HLEVVKLLLRRGASV  110 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccC-------cHHHHHHHHHhcCcc
Confidence            45678899999999999999999999865443322        346889999888888       688888888766544


Q ss_pred             hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCch
Q 011338           90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES  169 (488)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~  169 (488)
                      +                ++.....|||-.|+..|+.++++.+++.+                            .+..  
T Consensus       111 N----------------~tT~TNStPLraACfDG~leivKyLvE~g----------------------------ad~~--  144 (615)
T KOG0508|consen  111 N----------------DTTRTNSTPLRAACFDGHLEIVKYLVEHG----------------------------ADPE--  144 (615)
T ss_pred             c----------------cccccCCccHHHHHhcchhHHHHHHHHcC----------------------------CCCc--
Confidence            2                23344558999999988888877776655                            2222  


Q ss_pred             hhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338          170 QFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN  249 (488)
Q Consensus       170 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  249 (488)
                       ..|..|.|.||+||.+||.+|+++|++.+++.. .++.+|+|+||.+++.|+.+++++|+++|+.     -.+|..|-|
T Consensus       145 -IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-----i~~d~~Gmt  217 (615)
T KOG0508|consen  145 -IANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTALHDCAESGSVDIVQLLLKHGAK-----IDVDGHGMT  217 (615)
T ss_pred             -ccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchHHHhhhhcccHHHHHHHHhCCce-----eeecCCCCc
Confidence             267889999999999999999999999999864 5699999999999999999999999999864     578889999


Q ss_pred             HHHHHHHhCCCCCccccc
Q 011338          250 ILHQAAFLAPSSQLDRVS  267 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~l~  267 (488)
                      ||..|+..|+.++|+.+.
T Consensus       218 PL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  218 PLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             hHHHHhhhcchHHHHHHh
Confidence            999999999999987653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.4e-21  Score=209.38  Aligned_cols=242  Identities=13%  Similarity=0.021  Sum_probs=155.1

Q ss_pred             CcccccccCccccCCCCCCCCc-----------hhHHHHHHH-----------cCCccHHHHHHHhCccccccccCCCCh
Q 011338            1 MVRYLYRETPIAELDPDKGTNG-----------AMLLTSCII-----------DDIFDIPLDLLQRYRKLAYAQDNDGDT   58 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G-----------~T~LH~A~~-----------~g~~div~~LL~~~~~~~~~~d~~G~T   58 (488)
                      +|++|++.+++....+.++..|           .||||+|+.           .++.+++++|++.+ .+++.+|.+|.|
T Consensus       153 ivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~T  231 (661)
T PHA02917        153 IIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCT  231 (661)
T ss_pred             HHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCc
Confidence            4789999998765432334444           599999986           46889999999985 568999999999


Q ss_pred             HHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHH---------HHHHHHH
Q 011338           59 AIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMT---------KLLHMVW  129 (488)
Q Consensus        59 pLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~---------~~~~~~~  129 (488)
                      |||+|+..|+..     .++++.|+. ...+..        .    ....+..+.++++.++..         .+.++++
T Consensus       232 pLh~A~~~g~~~-----~eivk~Li~-g~d~~~--------~----~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~  293 (661)
T PHA02917        232 ALQYYIKSSHID-----IDIVKLLMK-GIDNTA--------Y----SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVK  293 (661)
T ss_pred             HHHHHHHcCCCc-----HHHHHHHHh-CCcccc--------c----ccccCcccccchHHHHHHHhhccccccchHHHHH
Confidence            999999998421     345555543 211100        0    001222333344444311         1345555


Q ss_pred             HHhhccchh----------------hhhHHHH----HHhh-------Hh--HHHHHHHHhhhhcccCch-----------
Q 011338          130 KSLNLFVPA----------------IKHIYEV----KLAH-------VQ--TQELLSCVCREISTQGES-----------  169 (488)
Q Consensus       130 ~ll~~~~~~----------------~~~~~~~----~~~h-------~~--~~~il~~l~~~~~~~~~~-----------  169 (488)
                      .|++.|...                ++.+...    ...|       .+  ..++++.|++.+++++..           
T Consensus       294 ~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~  373 (661)
T PHA02917        294 LFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINI  373 (661)
T ss_pred             HHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcC
Confidence            555555210                0000000    0000       00  122444444444332211           


Q ss_pred             ----------------hhhhcCcchHHHHHHHcC-----------------------cHHHHHHHHHhCCCceeeccCCC
Q 011338          170 ----------------QFEKVGIKKVVFIAVKHG-----------------------IVEFITEIMKHYPDIIWCYDDYN  210 (488)
Q Consensus       170 ----------------~~~~~~g~tpLh~Aa~~G-----------------------~~~~v~~Ll~~~~~~~~~~d~~g  210 (488)
                                      ..++.+|+||||.|++.+                       ..++++.|++++++. +.+|..|
T Consensus       374 ~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdI-N~kd~~G  452 (661)
T PHA02917        374 DSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDI-NMIDKRG  452 (661)
T ss_pred             CHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCC-CCCCCCC
Confidence                            013456999999998543                       356789999999885 4569999


Q ss_pred             ccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH-hCCCCCcccc
Q 011338          211 RHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF-LAPSSQLDRV  266 (488)
Q Consensus       211 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~-~~~~~~v~~l  266 (488)
                      +||||+|+..++.+++++|++.|++    +|.+|..|+||||+|+. .++.++++.+
T Consensus       453 ~TpLh~Aa~~~~~~~v~~Ll~~GAd----in~~d~~G~T~L~~A~~~~~~~~iv~~L  505 (661)
T PHA02917        453 ETLLHKAVRYNKQSLVSLLLESGSD----VNIRSNNGYTCIAIAINESRNIELLKML  505 (661)
T ss_pred             cCHHHHHHHcCCHHHHHHHHHCcCC----CCCCCCCCCCHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999999999987    79999999999999996 5666666543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.85  E-value=4.4e-21  Score=198.87  Aligned_cols=260  Identities=13%  Similarity=0.005  Sum_probs=179.7

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHH-cCCccHHHHHHHhCcc--------------------------------
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCII-DDIFDIPLDLLQRYRK--------------------------------   47 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~-~g~~div~~LL~~~~~--------------------------------   47 (488)
                      +|++|++++++...   ++++|.||||+|+. .|+.|++++||+.+.+                                
T Consensus        87 lvk~LI~~GAdvN~---~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  163 (631)
T PHA02792         87 LLKLLISKGLEINS---IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYD  163 (631)
T ss_pred             HHHHHHHcCCCccc---ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccc
Confidence            47899999997764   56779999999966 6999999999999643                                


Q ss_pred             ---ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH-
Q 011338           48 ---LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK-  123 (488)
Q Consensus        48 ---~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-  123 (488)
                         .++.+|..|.||||+|+..++........+.++.||.+...+.                ..+..|+||||.++... 
T Consensus       164 ~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~----------------~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        164 YDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR----------------YYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             cccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC----------------ccCCCCChHHHHHHHccc
Confidence               1235567799999999998843333335677787776544331                13446999999999988 


Q ss_pred             -HHHHHHHHhhccch--hhhhH--------H--------------------------------------HH-HHh-----
Q 011338          124 -LLHMVWKSLNLFVP--AIKHI--------Y--------------------------------------EV-KLA-----  148 (488)
Q Consensus       124 -~~~~~~~ll~~~~~--~~~~~--------~--------------------------------------~~-~~~-----  148 (488)
                       ..++++.|+.....  ....+        +                                      .. +..     
T Consensus       228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q  307 (631)
T PHA02792        228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ  307 (631)
T ss_pred             chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence             66777776653210  00000        0                                      00 000     


Q ss_pred             ---h------HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCC--CccHHHHH
Q 011338          149 ---H------VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDY--NRHIFSYA  217 (488)
Q Consensus       149 ---h------~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~--g~t~Lh~A  217 (488)
                         |      .-..++++.+++++....     ......++|.||..|+.+++++|+++|++.. ..|.+  |.||||+|
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-----r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN-~kD~~g~~~TpLh~A  381 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLY-----RFKHINKYFQKFDNRDPKVVEYILKNGNVVV-EDDDNIINIMPLFPT  381 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccc-----cCCcchHHHHHHHcCCHHHHHHHHHcCCchh-hhcCCCCChhHHHHH
Confidence               0      011234444444443321     1125677999999999999999999998864 44666  46999998


Q ss_pred             HhcCChh---HHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHH
Q 011338          218 TLQRQEK---IFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEM  294 (488)
Q Consensus       218 ~~~~~~~---iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~  294 (488)
                      +.....+   ++++|++.|++    +|.+|..|.||||+|+..++.++++.+.                   -...+.+.
T Consensus       382 ~~n~~~~v~~IlklLIs~GAD----IN~kD~~G~TPLh~Aa~~~n~eivelLL-------------------s~GADIN~  438 (631)
T PHA02792        382 LSIHESDVLSILKLCKPYIDD----INKIDKHGRSILYYCIESHSVSLVEWLI-------------------DNGADINI  438 (631)
T ss_pred             HHhccHhHHHHHHHHHhcCCc----cccccccCcchHHHHHHcCCHHHHHHHH-------------------HCCCCCCC
Confidence            8777654   57888999887    8999999999999999988865543220                   02345678


Q ss_pred             hhcCCCCchhhhhH
Q 011338          295 VNLHYKTPRALFSD  308 (488)
Q Consensus       295 ~n~~G~tp~~l~~~  308 (488)
                      +|+.|+||++++..
T Consensus       439 kD~~G~TpL~~A~~  452 (631)
T PHA02792        439 TTKYGSTCIGICVI  452 (631)
T ss_pred             cCCCCCCHHHHHHH
Confidence            89999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=6e-21  Score=199.89  Aligned_cols=258  Identities=13%  Similarity=0.096  Sum_probs=175.2

Q ss_pred             cCCCCCCCCchhHHHHHHHcC---CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338           13 ELDPDKGTNGAMLLTSCIIDD---IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        13 ~l~~~~d~~G~T~LH~A~~~g---~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      ++++.+|.+|+||||+|+..|   +.|+|++||++ +++++.+|.+|+||||+|+..++     .+.++++.|+......
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~~-----~~~eIv~~Ll~~~~~~  105 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRKY-----VKSQIVHLLISSYSNA  105 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcCC-----CcHHHHHHHHhcCCCC
Confidence            344568899999999999997   48999999988 55689999999999999998662     1245566666543211


Q ss_pred             --hhcc--------ccCCCCCCCCC-----------CCC-C----C-CchhhhhHHHHHHHHHHHHHHHhhccchh--h-
Q 011338           90 --RSAY--------ASNNISHGDIE-----------RPH-Q----G-PAEHKNFFTRAMTKLLHMVWKSLNLFVPA--I-  139 (488)
Q Consensus        90 --~~~~--------~~~~~~~~~~~-----------~~~-~----~-~~~~t~l~~a~~~~~~~~~~~ll~~~~~~--~-  139 (488)
                        +..+        .....++++.+           ++. .    . ..+.++++.+...++.++++.|++.|...  . 
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~  185 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYV  185 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccc
Confidence              1000        00001111111           000 1    1 25778999999999999999999987543  1 


Q ss_pred             -h-hHHHH-HH-------------hhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHH--HHHcCcHHHHHHHHH----
Q 011338          140 -K-HIYEV-KL-------------AHVQTQELLSCVCREISTQGESQFEKVGIKKVVFI--AVKHGIVEFITEIMK----  197 (488)
Q Consensus       140 -~-~~~~~-~~-------------~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~--Aa~~G~~~~v~~Ll~----  197 (488)
                       + ..++. ..             ......++++.|++++++++.   +|.+|+||||+  |+..|+.|++++|++    
T Consensus       186 ~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~---kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~  262 (672)
T PHA02730        186 FRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHG---RDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDT  262 (672)
T ss_pred             cccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCcccHHHHHHHHhcccc
Confidence             0 00110 11             123357899999999988776   78899999994  667788999999998    


Q ss_pred             ----------------------------hCCCcee-------------------eccCCCcc------------------
Q 011338          198 ----------------------------HYPDIIW-------------------CYDDYNRH------------------  212 (488)
Q Consensus       198 ----------------------------~~~~~~~-------------------~~d~~g~t------------------  212 (488)
                                                  ++.+.--                   ..|..|.+                  
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~  342 (672)
T PHA02730        263 CSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESI  342 (672)
T ss_pred             ccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhH
Confidence                                        3433211                   14566655                  


Q ss_pred             ---HHHHHHhcC---ChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC----CCCcccccchHHhhHHHHhHHHH
Q 011338          213 ---IFSYATLQR---QEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP----SSQLDRVSGAALQMQRELQWFKE  282 (488)
Q Consensus       213 ---~Lh~A~~~~---~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~----~~~v~~l~~~~l~~~~~l~~~~~  282 (488)
                         .||.=.+.+   +.+++++|+++|++    +|.+ .+|+||||+|+..++    .++++                  
T Consensus       343 ~q~~l~~Y~~~~~~v~ieIvelLIs~GAd----IN~k-~~G~TpLH~Aa~~nnn~i~~eIve------------------  399 (672)
T PHA02730        343 VQAMLINYLHYGDMVSIPILRCMLDNGAT----MDKT-TDNNYPLHDYFVNNNNIVDVNVVR------------------  399 (672)
T ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHCCCC----CCcC-CCCCcHHHHHHHHcCCcchHHHHH------------------
Confidence               677766655   68999999999987    6764 799999999998874    34332                  


Q ss_pred             HHhhccc---hhHHHhhcCCCCchh
Q 011338          283 VESIVQP---KYKEMVNLHYKTPRA  304 (488)
Q Consensus       283 v~~~~~~---~~~~~~n~~G~tp~~  304 (488)
                        -++..   .+.+.+|++|+||+.
T Consensus       400 --lLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        400 --FIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             --HHHHcCCCccccccccCCCchHh
Confidence              22221   246778899999996

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=8.1e-21  Score=210.52  Aligned_cols=151  Identities=11%  Similarity=0.017  Sum_probs=102.0

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .+.++.++||.||..|+.++++.|++.+ .+++..|.+|+||||+||.+|+       .+                    
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G-~d~n~~d~~G~TpLh~Aa~~g~-------~~--------------------  572 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAK-LDPDIGDSKGRTPLHIAASKGY-------ED--------------------  572 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCh-------HH--------------------
Confidence            4556789999999999999999999885 4578999999999999999992       22                    


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                                                               +++.|++.+.+.+.   +|.+|.
T Consensus       573 ---------------------------------------------------------~v~~Ll~~gadin~---~d~~G~  592 (823)
T PLN03192        573 ---------------------------------------------------------CVLVLLKHACNVHI---RDANGN  592 (823)
T ss_pred             ---------------------------------------------------------HHHHHHhcCCCCCC---cCCCCC
Confidence                                                                     22233333333322   455666


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      ||||+|+..|+.++++.|++.+...   .+..|.++||.|+.+|+.++++.|++.|++    +|.+|.+|+||||+|+..
T Consensus       593 TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----in~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        593 TALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN----VDSEDHQGATALQVAMAE  665 (823)
T ss_pred             CHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHC
Confidence            6666666666666666666544321   123455666666666666666666666654    566666666666666666


Q ss_pred             CCCCCc
Q 011338          258 APSSQL  263 (488)
Q Consensus       258 ~~~~~v  263 (488)
                      |+.+++
T Consensus       666 g~~~iv  671 (823)
T PLN03192        666 DHVDMV  671 (823)
T ss_pred             CcHHHH
Confidence            665444

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.5e-20  Score=197.69  Aligned_cols=202  Identities=13%  Similarity=0.070  Sum_probs=138.0

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHc---CCccHHHHHHHhCcccc-ccccCCCChHHHHHhhCCCCCCCCchhh
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIID---DIFDIPLDLLQRYRKLA-YAQDNDGDTAIDMLAQKPSAFPSGTQLA   77 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~---g~~div~~LL~~~~~~~-~~~d~~G~TpLh~Aa~~g~~~~s~~~l~   77 (488)
                      |++|++.+++.+.   +|.+|.||||.|+..   |+.|++++|++++. ++ +.+|..|+||||+|++.++     ...+
T Consensus        91 v~~Ll~~Gadin~---~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Ga-din~~~d~~g~tpLh~a~~~~~-----~~~~  161 (494)
T PHA02989         91 VKLLLKFGADINL---KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGI-NVNDVKNSRGYNLLHMYLESFS-----VKKD  161 (494)
T ss_pred             HHHHHHCCCCCCC---CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCC-CcccccCCCCCCHHHHHHHhcc-----CCHH
Confidence            6677777776655   677788888877665   56788888888744 45 6778888888888776531     1245


Q ss_pred             HHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH----HHHHHHHHhhccchhhhhHHH--HHHhh--
Q 011338           78 FWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK----LLHMVWKSLNLFVPAIKHIYE--VKLAH--  149 (488)
Q Consensus        78 ~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~--~~~~h--  149 (488)
                      .++.++....++.               ...+..|.||+|.++..+    +.++++.|++.|... +..+.  ....|  
T Consensus       162 iv~~Ll~~Gadi~---------------~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~  225 (494)
T PHA02989        162 VIKILLSFGVNLF---------------EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESF  225 (494)
T ss_pred             HHHHHHHcCCCcc---------------ccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHH
Confidence            5666664433221               012345778888776543    778888888877421 11110  00001  


Q ss_pred             --------HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcC
Q 011338          150 --------VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQR  221 (488)
Q Consensus       150 --------~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  221 (488)
                              ....+++..+.+ +.+.+.   +|..|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+.+|
T Consensus       226 ~~~~~~~~~~~~~il~~l~~-~advn~---~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi-n~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILK-YIKINK---KDKKGFNPLLISAKVDNYEAFNYLLKLGDDI-YNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             HHhchhhcccchHHHHHHHh-CCCCCC---CCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcC
Confidence                    122344444443 334333   6888999999999999999999999999885 456999999999999999


Q ss_pred             ChhHHHHHHhcC
Q 011338          222 QEKIFNLIYTMG  233 (488)
Q Consensus       222 ~~~iv~~Ll~~~  233 (488)
                      +.++++.|++.+
T Consensus       301 ~~~iv~~LL~~~  312 (494)
T PHA02989        301 NIDMLNRILQLK  312 (494)
T ss_pred             CHHHHHHHHhcC
Confidence            999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=187.85  Aligned_cols=195  Identities=12%  Similarity=0.000  Sum_probs=154.5

Q ss_pred             ccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccc------cccCCCChHHHHHhhCCCCCCCCchh
Q 011338            3 RYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAY------AQDNDGDTAIDMLAQKPSAFPSGTQL   76 (488)
Q Consensus         3 ~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~------~~d~~G~TpLh~Aa~~g~~~~s~~~l   76 (488)
                      +|+++.+.+.+-   ++.+|     +|+..+..|++++|+.++.. ++      .+++.++|+||.++..+.     ...
T Consensus        66 ~~~~~~~~~i~~---~~~~~-----~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~-----n~~  131 (437)
T PHA02795         66 DYFRIHRDNIDQ---YIVDR-----LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAY-----VEI  131 (437)
T ss_pred             HHHHHcCcchhh---hhhhh-----HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcC-----CCH
Confidence            466777765433   44455     89999999999999999544 44      678889999999999442     157


Q ss_pred             hHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338           77 AFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL  156 (488)
Q Consensus        77 ~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il  156 (488)
                      ++++.|+.+..++..                  ..+.||+|.|+..++.++++.++..|.+..+..              
T Consensus       132 eiV~~LI~~GADIn~------------------~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~--------------  179 (437)
T PHA02795        132 DIVDFMVDHGAVIYK------------------IECLNAYFRGICKKESSVVEFILNCGIPDENDV--------------  179 (437)
T ss_pred             HHHHHHHHCCCCCCC------------------CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccc--------------
Confidence            788888877654421                  233689999999999999999988874321100              


Q ss_pred             HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcc
Q 011338          157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKK  236 (488)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  236 (488)
                                 .....+..|.||+|.|+..|+.|++++|++++++. +.+|..|+||||+|+.+|+.+++++|++.|++ 
T Consensus       180 -----------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-  246 (437)
T PHA02795        180 -----------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-  246 (437)
T ss_pred             -----------cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence                       00112334779999999999999999999999885 56699999999999999999999999999987 


Q ss_pred             ccccccccCCCCcHHHHHHHhCC
Q 011338          237 NSVATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       237 ~~~~~~~D~~G~TpLhlA~~~~~  259 (488)
                         +|.+|.+|+||||+|+..|+
T Consensus       247 ---IN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        247 ---VNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ---CCCcCCCCCCHHHHHHHcCC
Confidence               79999999999999999985

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=9.9e-19  Score=192.65  Aligned_cols=230  Identities=10%  Similarity=-0.010  Sum_probs=150.6

Q ss_pred             cccccccCccccCCCCCCCCchhHHH-HHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLT-SCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH-~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      |+.++.+.+..+. +..|..|+|||| .|+.+++.++++.|++.+.     .+..|.||||.|+..+        .+.++
T Consensus        33 v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~--------~~~v~   98 (743)
T TIGR00870        33 VYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEY--------VDAVE   98 (743)
T ss_pred             HHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhcc--------HHHHH
Confidence            3445555322222 236789999999 8999999999999998743     6788999999998744        22333


Q ss_pred             HHhhhhhhhhhccccCCCC-CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338           81 KWIYSFIYIRSAYASNNIS-HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV  159 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l  159 (488)
                      .++........   ...+. ............|.||||.|+..++.++++.|++.+.+-- ...   ...    .     
T Consensus        99 ~ll~~l~~~~~---~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~---~~~----~-----  162 (743)
T TIGR00870        99 AILLHLLAAFR---KSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARA---CGD----F-----  162 (743)
T ss_pred             HHHHHHhhccc---ccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCc---CCc----h-----
Confidence            33332211100   00000 0000111224579999999999999999999998873221 000   000    0     


Q ss_pred             hhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcC---------ChhHHHHHH
Q 011338          160 CREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQR---------QEKIFNLIY  230 (488)
Q Consensus       160 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~---------~~~iv~~Ll  230 (488)
                      +..   .+. .-....|.||||.|+..|+.+++++|++++++. +..|..|+||||+|+..+         ...+.++++
T Consensus       163 ~~~---~~~-~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~  237 (743)
T TIGR00870       163 FVK---SQG-VDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFAL  237 (743)
T ss_pred             hhc---CCC-CCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            000   000 002345899999999999999999999987664 566999999999999987         234556666


Q ss_pred             hcCCc---cccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          231 TMGAK---KNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       231 ~~~~~---~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      +.++.   ...+.+.+|++|.||||+|+..|+.++++.+
T Consensus       238 ~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       238 SLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             HHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            55432   2223367899999999999999999887654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=9.6e-19  Score=192.74  Aligned_cols=229  Identities=12%  Similarity=0.022  Sum_probs=151.2

Q ss_pred             CCchhHHHHHHHcCCccHHHHHHHhC-ccccccccCCCChHHH-HHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           20 TNGAMLLTSCIIDDIFDIPLDLLQRY-RKLAYAQDNDGDTAID-MLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        20 ~~G~T~LH~A~~~g~~div~~LL~~~-~~~~~~~d~~G~TpLh-~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .++++.|+.||+.|+.+.++.++++. +.++|..|..|+|||| .|+..+       +..+++.+++...          
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~-------~~eiv~lLl~~g~----------   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENE-------NLELTELLLNLSC----------   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcC-------hHHHHHHHHhCCC----------
Confidence            46789999999999999999999873 3457888999999999 555555       3445554443210          


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhh----ccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLN----LFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK  173 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~  173 (488)
                                .+..|.|+||.|+.. ..+.++.++.    .+.....            .    .+.     .+.....+
T Consensus        78 ----------~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~------------~----~~~-----~~~~~~~~  125 (743)
T TIGR00870        78 ----------RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGP------------L----ELA-----NDQYTSEF  125 (743)
T ss_pred             ----------CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCc------------h----hhh-----cccccccc
Confidence                      355789999998762 2222222221    1100000            0    000     01111124


Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceee-------------ccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWC-------------YDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~-------------~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~  240 (488)
                      ..|.||||+||.+|+.++++.|++++++....             ....|+||||.|+..|+.+++++|++.|++    +
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad----i  201 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD----I  201 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc----h
Confidence            56999999999999999999999998775421             123699999999999999999999999876    7


Q ss_pred             ccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhc-cch----hHHHhhcCCCCchhhhhHH
Q 011338          241 TNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIV-QPK----YKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~-~~~----~~~~~n~~G~tp~~l~~~~  309 (488)
                      |.+|..|+||||+|+..+....-    ...+.    ....+.+.... ...    ..+++|++|.||++++.+.
T Consensus       202 n~~d~~g~T~Lh~A~~~~~~~~~----~~~l~----~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       202 LTADSLGNTLLHLLVMENEFKAE----YEELS----CQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             hhHhhhhhHHHHHHHhhhhhhHH----HHHHH----HHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhc
Confidence            99999999999999998642110    00000    00011111111 111    2267899999999998654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=1.4e-20  Score=177.02  Aligned_cols=160  Identities=16%  Similarity=0.132  Sum_probs=129.4

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      -|.+|+|+||||+.++|+++|+.||+.+-..++.+|+-|+||.++||...                     ++       
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~---------------------lk-------  315 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAK---------------------LK-------  315 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHh---------------------hc-------
Confidence            68999999999999999999999999998899999999999999998654                     00       


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                 .            ..+..+|+.|++.+                             +++.+  ....|+
T Consensus       316 -----------~------------~~d~~vV~~LF~mg-----------------------------nVNaK--AsQ~gQ  341 (452)
T KOG0514|consen  316 -----------Q------------PADRTVVERLFKMG-----------------------------DVNAK--ASQHGQ  341 (452)
T ss_pred             -----------c------------hhhHHHHHHHHhcc-----------------------------Ccchh--hhhhcc
Confidence                       0            01222333333322                             12211  234599


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      |+|.+|+..|+.++|+.||..+++.+ .+|.+|.|+|+.|+++||.+++++|+...   ...+...|.||.|+|.+|-..
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEivklLLA~p---~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIVKLLLAVP---SCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHHHHHhccC---cccceeecCCCchhhhhHHhc
Confidence            99999999999999999999888854 55999999999999999999999999874   334788999999999999999


Q ss_pred             CCCCCc
Q 011338          258 APSSQL  263 (488)
Q Consensus       258 ~~~~~v  263 (488)
                      ||.+|-
T Consensus       418 gh~eIa  423 (452)
T KOG0514|consen  418 GHREIA  423 (452)
T ss_pred             CchHHH
Confidence            997763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.82  E-value=6.1e-20  Score=170.48  Aligned_cols=179  Identities=13%  Similarity=0.027  Sum_probs=130.2

Q ss_pred             cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHH--HHH
Q 011338           49 AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTK--LLH  126 (488)
Q Consensus        49 ~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~  126 (488)
                      .+.....+.||||.|++.|       .+..++.++..   +                ...+..|.||||.|+..+  +. 
T Consensus        14 ~~~~~~~~~~pL~~A~~~~-------~~~~vk~Li~~---~----------------n~~~~~g~TpLh~a~~~~~~~~-   66 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKD-------DIEGVKKWIKF---V----------------NDCNDLYETPIFSCLEKDKVNV-   66 (209)
T ss_pred             HHHHhhccCcHHHHHHHhC-------cHHHHHHHHHh---h----------------hccCccCCCHHHHHHHcCCCCH-
Confidence            3344567899999999999       45666766532   1                113456889999887543  34 


Q ss_pred             HHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh-cCcchHHHHHHHc---CcHHHHHHHHHhCCCc
Q 011338          127 MVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK-VGIKKVVFIAVKH---GIVEFITEIMKHYPDI  202 (488)
Q Consensus       127 ~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~-~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~  202 (488)
                                                 ++++.|++.+.+.+.   ++ ..|.||||+|+..   |+.++++.|++++++.
T Consensus        67 ---------------------------eiv~~Ll~~gadvn~---~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi  116 (209)
T PHA02859         67 ---------------------------EILKFLIENGADVNF---KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI  116 (209)
T ss_pred             ---------------------------HHHHHHHHCCCCCCc---cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC
Confidence                                       444455555544443   33 4799999998864   5799999999998875


Q ss_pred             eeeccCCCccHHHHHHh--cCChhHHHHHHhcCCccccccccccCCCCcHHHHH-HHhCCCCCcccccchHHhhHHHHhH
Q 011338          203 IWCYDDYNRHIFSYATL--QRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA-AFLAPSSQLDRVSGAALQMQRELQW  279 (488)
Q Consensus       203 ~~~~d~~g~t~Lh~A~~--~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA-~~~~~~~~v~~l~~~~l~~~~~l~~  279 (488)
                       +.+|.+|+||||+|+.  .++.+++++|++.|++    ++.+|.+|+||||.+ +..++.++++.+.            
T Consensus       117 -n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll------------  179 (209)
T PHA02859        117 -TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----FLNKDFDNNNILYSYILFHSDKKIFDFLT------------  179 (209)
T ss_pred             -CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----cccccCCCCcHHHHHHHhcCCHHHHHHHH------------
Confidence             5679999999999986  4689999999999977    789999999999965 5555544442220            


Q ss_pred             HHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          280 FKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       280 ~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                          +   ...+.+.+|+.|+||++++..
T Consensus       180 ----~---~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        180 ----S---LGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             ----H---cCCCCCCCCCCCCCHHHHHhh
Confidence                0   224467889999999999754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.81  E-value=1.2e-19  Score=201.30  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=130.9

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      ++.|+..+.+.+.   +|.+|+||||+|+..|+.++++.|++. +.+++.+|.+|.||||+|+..|+       .+    
T Consensus       541 l~~Ll~~G~d~n~---~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~~~g~-------~~----  605 (823)
T PLN03192        541 LEELLKAKLDPDI---GDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAKH-------HK----  605 (823)
T ss_pred             HHHHHHCCCCCCC---CCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHHhCC-------HH----
Confidence            5677777776554   799999999999999999999999997 55689999999999999999982       11    


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                               +++.|.+
T Consensus       606 -------------------------------------------------------------------------iv~~L~~  612 (823)
T PLN03192        606 -------------------------------------------------------------------------IFRILYH  612 (823)
T ss_pred             -------------------------------------------------------------------------HHHHHHh
Confidence                                                                                     1222222


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                      .....     ....|.+|||.||..|+.++++.|++++++. +.+|.+|+||||+|+.+|+.+++++|++.|++    ++
T Consensus       613 ~~~~~-----~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd----v~  682 (823)
T PLN03192        613 FASIS-----DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIMNGAD----VD  682 (823)
T ss_pred             cCccc-----CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC----CC
Confidence            11111     1234779999999999999999999999885 46699999999999999999999999999987    78


Q ss_pred             cccCCC-CcHHHHHHHhCC
Q 011338          242 NWDKAH-NNILHQAAFLAP  259 (488)
Q Consensus       242 ~~D~~G-~TpLhlA~~~~~  259 (488)
                      .+|.+| .||++++.....
T Consensus       683 ~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        683 KANTDDDFSPTELRELLQK  701 (823)
T ss_pred             CCCCCCCCCHHHHHHHHHH
Confidence            899888 999999876543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=160.32  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=102.1

Q ss_pred             cCCCCCCCCchhHHHHHHHcCCccHHHHHHHh------CccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhh
Q 011338           13 ELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQR------YRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSF   86 (488)
Q Consensus        13 ~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~------~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~   86 (488)
                      .+...+|.+|.||||+||+.|+  ++.++...      .+.+.+.+|.+|+||||+|+..|+.                 
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~-----------------   68 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKA-----------------   68 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCch-----------------
Confidence            3445678899999999999997  34443322      1223456789999999999988720                 


Q ss_pred             hhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhccc
Q 011338           87 IYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQ  166 (488)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~  166 (488)
                                                                                      ...++++.|++.+...
T Consensus        69 ----------------------------------------------------------------~~~e~v~~Ll~~gadi   84 (154)
T PHA02736         69 ----------------------------------------------------------------DPQEKLKLLMEWGADI   84 (154)
T ss_pred             ----------------------------------------------------------------hHHHHHHHHHHcCCCc
Confidence                                                                            1123445555555544


Q ss_pred             Cchhhhh-cCcchHHHHHHHcCcHHHHHHHHHh-CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          167 GESQFEK-VGIKKVVFIAVKHGIVEFITEIMKH-YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       167 ~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      +.   ++ .+|.||||+|+..|+.+++++|++. +.+ .+.+|..|+||||+|+..|+.+++++|++.|++
T Consensus        85 n~---~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         85 NG---KERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cc---cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            43   45 4799999999999999999999975 555 456799999999999999999999999998865

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=4.5e-19  Score=158.54  Aligned_cols=141  Identities=9%  Similarity=0.014  Sum_probs=110.9

Q ss_pred             CCCCchhHHHHHHHcCCc----cHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           18 KGTNGAMLLTSCIIDDIF----DIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~----div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      .+.++.++||.||+.|+.    +++++|++. +..++.+|.+|+||||+||..|+.                        
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~------------------------   70 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRA------------------------   70 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCcc------------------------
Confidence            456778899999999998    455556655 556788999999999999998821                        


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK  173 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~  173 (488)
                                                                               ..+++++.|++.+...+.   ++
T Consensus        71 ---------------------------------------------------------~~~~~i~~Ll~~Gadin~---~d   90 (166)
T PHA02743         71 ---------------------------------------------------------NAVMKIELLVNMGADINA---RE   90 (166)
T ss_pred             ---------------------------------------------------------CHHHHHHHHHHcCCCCCC---CC
Confidence                                                                     112334555555555443   55


Q ss_pred             -cCcchHHHHHHHcCcHHHHHHHHH-hCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC
Q 011338          174 -VGIKKVVFIAVKHGIVEFITEIMK-HYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN  248 (488)
Q Consensus       174 -~~g~tpLh~Aa~~G~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~  248 (488)
                       ..|.||||+|+..|+.+++++|++ .+.+. ..+|..|+||||+|+..++.+++++|++.|++    ++.+|..|.
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~~  162 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAV----CDDPLSIGL  162 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcccCCc
Confidence             479999999999999999999996 56554 56799999999999999999999999999876    678877764

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=8.9e-19  Score=157.29  Aligned_cols=135  Identities=14%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             CCCCCCchhHHHHHHHcCCccHHHHHHHhC-----ccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhh
Q 011338           16 PDKGTNGAMLLTSCIIDDIFDIPLDLLQRY-----RKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIR   90 (488)
Q Consensus        16 ~~~d~~G~T~LH~A~~~g~~div~~LL~~~-----~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~   90 (488)
                      ..+|.+|.||||+|++.|+.++++.|++..     +..++.+|..|+||||+|+..|+..                    
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~--------------------   74 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQ--------------------   74 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChH--------------------
Confidence            347888999999999999999999986532     4567889999999999999888210                    


Q ss_pred             hccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchh
Q 011338           91 SAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQ  170 (488)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~  170 (488)
                                                                                  ...++++.+++.+.+.+.  
T Consensus        75 ------------------------------------------------------------~~~~ii~~Ll~~gadin~--   92 (169)
T PHA02741         75 ------------------------------------------------------------LAAEIIDHLIELGADINA--   92 (169)
T ss_pred             ------------------------------------------------------------HHHHHHHHHHHcCCCCCC--
Confidence                                                                        012445555555544443  


Q ss_pred             hhhc-CcchHHHHHHHcCcHHHHHHHHHh-CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          171 FEKV-GIKKVVFIAVKHGIVEFITEIMKH-YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       171 ~~~~-~g~tpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                       ++. .|+||||+|+..|+.++++.|++. +.+ ....|.+|+||||+|+..++.+++++|++.++
T Consensus        93 -~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 -QEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             -CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence             453 799999999999999999999974 554 45668899999999999999999999988753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=6.9e-19  Score=176.40  Aligned_cols=182  Identities=11%  Similarity=0.035  Sum_probs=131.8

Q ss_pred             cccccccCccccCCC---CCCCCchhHHHHHHH--cCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchh
Q 011338            2 VRYLYRETPIAELDP---DKGTNGAMLLTSCII--DDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQL   76 (488)
Q Consensus         2 v~~L~~~~~~~~l~~---~~d~~G~T~LH~A~~--~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l   76 (488)
                      +++|.+++..+++-.   ++++.++|+||+|+.  .|+.|+|++|++++. +++.  .++.||||.|+..+       ..
T Consensus        93 ~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GA-DIn~--~~~~t~lh~A~~~~-------~~  162 (437)
T PHA02795         93 ISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGA-VIYK--IECLNAYFRGICKK-------ES  162 (437)
T ss_pred             HHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCC-CCCC--CCCCCHHHHHHHcC-------cH
Confidence            578889888765110   367789999999999  999999999999955 4565  35689999999988       35


Q ss_pred             hHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338           77 AFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL  156 (488)
Q Consensus        77 ~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il  156 (488)
                      ++++.++.+......          ....+..+..+.+++|.+...++.                            +++
T Consensus       163 eIVk~Lls~Ga~~~n----------~~~~~l~~~~~~t~l~~a~~~~~~----------------------------eIv  204 (437)
T PHA02795        163 SVVEFILNCGIPDEN----------DVKLDLYKIIQYTRGFLVDEPTVL----------------------------EIY  204 (437)
T ss_pred             HHHHHHHhcCCcccc----------cccchhhhhhccchhHHHHhcCHH----------------------------HHH
Confidence            566666644321100          000000112344566666555444                            445


Q ss_pred             HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC--------hhHHHH
Q 011338          157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ--------EKIFNL  228 (488)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~--------~~iv~~  228 (488)
                      +.|++.+++.+.   +|..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+        .+++++
T Consensus       205 e~LIs~GADIN~---kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        205 KLCIPYIEDINQ---LDAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMSNGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             HHHHhCcCCcCc---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence            555555555544   6888999999999999999999999999885 4569999999999999984        689999


Q ss_pred             HHhcCCc
Q 011338          229 IYTMGAK  235 (488)
Q Consensus       229 Ll~~~~~  235 (488)
                      |++.|++
T Consensus       281 LL~~gad  287 (437)
T PHA02795        281 LLREPLS  287 (437)
T ss_pred             HHhCCCC
Confidence            9998865

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=2e-19  Score=174.28  Aligned_cols=188  Identities=12%  Similarity=0.053  Sum_probs=137.7

Q ss_pred             HHHHcCCccHHHHHHHhCc--ccc--ccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCC
Q 011338           28 SCIIDDIFDIPLDLLQRYR--KLA--YAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDI  103 (488)
Q Consensus        28 ~A~~~g~~div~~LL~~~~--~~~--~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~  103 (488)
                      -|++.|.......|+....  +..  -..+.+|.|||-+||++|       +.+.++.++..|-.-.+.     ...+.+
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnG-------H~~vVeyLle~~~a~~e~-----~GsV~F   77 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNG-------HADVVEYLLEHCRASPEQ-----GGSVRF   77 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcC-------cHHHHHHHHHHhcCCccC-----CceEEe
Confidence            4666676665555554322  111  123567889999999999       456788888766321110     011111


Q ss_pred             CCCCC-CCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHH
Q 011338          104 ERPHQ-GPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFI  182 (488)
Q Consensus       104 ~~~~~-~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~  182 (488)
                         ++ .-.|-.|++.|+.-+|.++|+.++..+                            ..++.   ......|||--
T Consensus        78 ---Dge~IegappLWaAsaAGHl~vVk~L~~~g----------------------------a~VN~---tT~TNStPLra  123 (615)
T KOG0508|consen   78 ---DGETIEGAPPLWAASAAGHLEVVKLLLRRG----------------------------ASVND---TTRTNSTPLRA  123 (615)
T ss_pred             ---CCcccCCCchhhHHhccCcHHHHHHHHHhc----------------------------Ccccc---ccccCCccHHH
Confidence               12 226777888888777777666665554                            23333   23335699999


Q ss_pred             HHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCC
Q 011338          183 AVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQ  262 (488)
Q Consensus       183 Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~  262 (488)
                      ||..|+.|+|++|++++.+. +..|..|+|.||+||.+||.+|+++|++.|++    +|.++..|||+||.++..|+.++
T Consensus       124 ACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD----vn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGAD----VNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             HHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCC----cchhcccCchHHHhhhhcccHHH
Confidence            99999999999999998885 56699999999999999999999999999988    89999999999999999999888


Q ss_pred             cccc
Q 011338          263 LDRV  266 (488)
Q Consensus       263 v~~l  266 (488)
                      ++.+
T Consensus       199 vq~L  202 (615)
T KOG0508|consen  199 VQLL  202 (615)
T ss_pred             HHHH
Confidence            7544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.78  E-value=1.7e-19  Score=195.95  Aligned_cols=223  Identities=17%  Similarity=0.096  Sum_probs=141.3

Q ss_pred             cccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHh
Q 011338            4 YLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWI   83 (488)
Q Consensus         4 ~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li   83 (488)
                      +|+.++.....   ...+|.||||.|+..|+.++++.|+.. +..++.+|.+|.||||.|+.+|       +.+.++.++
T Consensus        72 ~ll~~~a~v~~---~~~~~~~plh~a~~~~~a~~v~~ll~~-ga~~~~~~~~~lTpLh~aa~~g-------~~~~~~~ll  140 (1143)
T KOG4177|consen   72 LLLNRGAIVNA---TARNGITPLHVASKRGDAEMVKLLLCR-GAQIDARDRDGLTPLHCAARKG-------HVQVIELLL  140 (1143)
T ss_pred             hhhccccccCc---ccccCccHHHHHHhhcchhHHHHHHhc-cCchhhcccCCCcchhhhcccc-------cHHHHHHHH
Confidence            44444444443   455666666666666666666666666 3345566666666666666666       233444444


Q ss_pred             hhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhh
Q 011338           84 YSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREI  163 (488)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~  163 (488)
                      +.+...                .-.++.|.++++.++.   ......+.+...++..  ......|....++.+.+....
T Consensus       141 ~~~a~~----------------~~k~~~g~t~l~~a~~---~~~~~ll~~~~~~d~l--~~~~~~~~~~~~~~~ll~~~~  199 (1143)
T KOG4177|consen  141 QHGAPI----------------NIKTKNGLSPLHMAAQ---VACARLLLEYKAPDYL--RLHVAAHCGHARVAKLLLDKK  199 (1143)
T ss_pred             HccCCC----------------cccccCCCCchhhhcc---hhhhHHhhhcccchhh--hhhHHhhcchHHHHhhhhccc
Confidence            433211                1134455666666555   3333333333321111  000111222334444444333


Q ss_pred             cccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccc
Q 011338          164 STQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNW  243 (488)
Q Consensus       164 ~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~  243 (488)
                      .+...   .+.+|.||+|.||..+..++++.++.++.+. ...|..|-||||.|+..|+.+++.++++.++.    ++..
T Consensus       200 ~~~~a---~~~~~~tpl~~a~~~nri~~~eLll~~gadv-~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~----~~~~  271 (1143)
T KOG4177|consen  200 ADPNA---SALNGFTPLHIACKKNRIKVVELLLKHGADV-SAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS----VNVS  271 (1143)
T ss_pred             CCccc---cccCCCCchhhhccccccceeeeeeeccCcC-CcccccCccHHHHHHhccchhHHHHHHhcccc----cCcc
Confidence            22222   5677999999999999999999999988774 55699999999999999999999999999876    7899


Q ss_pred             cCCCCcHHHHHHHhCCCCCcccc
Q 011338          244 DKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       244 D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      |..|.||||+||..+..++.+.+
T Consensus       272 ~vr~~tplh~AA~~~~~e~~~~l  294 (1143)
T KOG4177|consen  272 TVRGETPLHMAARAGQVEVCKLL  294 (1143)
T ss_pred             cccccCcchhhhccchhhhHhhh
Confidence            99999999999999988877655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-18  Score=172.56  Aligned_cols=217  Identities=17%  Similarity=0.078  Sum_probs=150.8

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |+.|+..+...+.   .+.+|.|+||-||...+.+||++|++. +..++..|.+|+||||-|+..|       ++.++..
T Consensus        56 v~~ll~~ga~~~~---~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg-------~~~i~~~  124 (527)
T KOG0505|consen   56 VRKLLNRGASPNL---CNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCG-------YLNIVEY  124 (527)
T ss_pred             HHHHhccCCCccc---cCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccc-------cHHHHHH
Confidence            4567777766654   799999999999999999999999998 4568999999999999999999       5778888


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCC-CCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHH-hhHhHHHHHHHH
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQ-GPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKL-AHVQTQELLSCV  159 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~h~~~~~il~~l  159 (488)
                      +|....++-.++-+     ++...+-. ...+...+            ..-...-  ++. +.+... .....++-+++.
T Consensus       125 li~~gA~~~avNsd-----g~~P~dl~e~ea~~~~l------------~~~~~r~--gi~-iea~R~~~e~~ml~D~~q~  184 (527)
T KOG0505|consen  125 LIQHGANLLAVNSD-----GNMPYDLAEDEATLDVL------------ETEMARQ--GID-IEAARKAEEQTMLDDARQW  184 (527)
T ss_pred             HHHhhhhhhhccCC-----CCCccccccCcchhHHH------------HHHHHHh--ccc-HHHHhhhhHHHHHHHHHHH
Confidence            88776554322211     11100000 11111111            1111100  111 111111 111122333344


Q ss_pred             hhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccc
Q 011338          160 CREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSV  239 (488)
Q Consensus       160 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~  239 (488)
                      +..+...+.   .+..|.|.||.|+.+|..++.++|++.+.+.. .+|.+||||||.|+..|+.+++++|+++|++    
T Consensus       185 l~~G~~~d~---~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~-~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~----  256 (527)
T KOG0505|consen  185 LNAGAELDA---RHARGATALHVAAANGYTEVAALLLQAGYSVN-IKDYDGWTPLHAAAHWGQEDACELLVEHGAD----  256 (527)
T ss_pred             Hhccccccc---cccccchHHHHHHhhhHHHHHHHHHHhccCcc-cccccCCCcccHHHHhhhHhHHHHHHHhhcc----
Confidence            443333332   45559999999999999999999999988754 5699999999999999999999999999987    


Q ss_pred             cccccCCCCcHHHHHHHh
Q 011338          240 ATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       240 ~~~~D~~G~TpLhlA~~~  257 (488)
                      +++....|.||+.+|...
T Consensus       257 ~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  257 MDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cchhhhcCCCCccchhhh
Confidence            789999999999998763

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=5.1e-19  Score=180.48  Aligned_cols=216  Identities=13%  Similarity=0.060  Sum_probs=124.8

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|.|+||.|+.+|+.+++++|++..+ +.+..|.+|.+|||+||..|+       .++++.++...-         
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea-~ldl~d~kg~~plhlaaw~g~-------~e~vkmll~q~d---------  106 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEA-LLDLCDTKGILPLHLAAWNGN-------LEIVKMLLLQTD---------  106 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchh-hhhhhhccCcceEEehhhcCc-------chHHHHHHhccc---------
Confidence            578999999999999999999999998854 567888999999999999994       344444432110         


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                         ...    -..-.+++++|.++..++.+                            ++.+|++++.+.   .++|..+
T Consensus       107 ---~~n----a~~~e~~tplhlaaqhgh~d----------------------------vv~~Ll~~~adp---~i~nns~  148 (854)
T KOG0507|consen  107 ---ILN----AVNIENETPLHLAAQHGHLE----------------------------VVFYLLKKNADP---FIRNNSK  148 (854)
T ss_pred             ---CCC----cccccCcCccchhhhhcchH----------------------------HHHHHHhcCCCc---cccCccc
Confidence               000    01223455555554443332                            222333332221   1244555


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCc-------eeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDI-------IWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN  249 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  249 (488)
                      .|+|-.|++-|..++++.|++..-..       ...++-.+-+|||.|+++||.++++.|++.|.+    +|..-++| |
T Consensus       149 ~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d----in~~t~~g-t  223 (854)
T KOG0507|consen  149 ETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD----INYTTEDG-T  223 (854)
T ss_pred             ccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC----cccccccc-h
Confidence            55555555555555555555431000       111233445555555555555555555555544    45444444 5


Q ss_pred             HHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338          250 ILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK  311 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~  311 (488)
                      +||-|+..|..++|..+..                   -..+..++|.+|+|++|+..+...
T Consensus       224 alheaalcgk~evvr~ll~-------------------~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  224 ALHEAALCGKAEVVRFLLE-------------------IGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             hhhhHhhcCcchhhhHHHh-------------------hccccccccccchHHHHHHHhcch
Confidence            5555555555554432211                   123467889999999999765443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.74  E-value=8.2e-18  Score=148.18  Aligned_cols=182  Identities=13%  Similarity=0.030  Sum_probs=148.1

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      ..|.+|+.++|.|+-.|+.+.+..+|.++ ...|..+-.+++|+.+++-+-       ++.....+.             
T Consensus        91 ~t~p~g~~~~~v~ap~~s~~k~sttltN~-~rgnevs~~p~s~~slsVhql-------~L~~~~~~~-------------  149 (296)
T KOG0502|consen   91 ETDPEGWSALLVAAPCGSVDKVSTTLTNG-ARGNEVSLMPWSPLSLSVHQL-------HLDVVDLLV-------------  149 (296)
T ss_pred             CCCchhhhhhhhcCCCCCcceeeeeeccc-ccCCccccccCChhhHHHHHH-------HHHHHHHHh-------------
Confidence            47888999999999999999999999884 447888899999999988654       222222111             


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                           +...+..+..|.|||.+|+..|+..+++.++++|..-               ++                -....
T Consensus       150 -----~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp---------------~~----------------lgk~r  193 (296)
T KOG0502|consen  150 -----NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP---------------DA----------------LGKYR  193 (296)
T ss_pred             -----hccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh---------------hh----------------hhhhh
Confidence                 1112235678999999999999999999999888321               01                12224


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .++|.+|++.|..++|+.|+.+.++.. ..|-+|-|||-+|++.+|.++++.|+..|++    ++..|..|++++.+|+.
T Consensus       194 esALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd----~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYAVRGNHVKCVESLLNSGAD----VTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeeeecCChHHHHHHHHhcCCC----cccccccCCcHHHHHHH
Confidence            699999999999999999999999965 4599999999999999999999999999987    79999999999999999


Q ss_pred             hCCC
Q 011338          257 LAPS  260 (488)
Q Consensus       257 ~~~~  260 (488)
                      .|+.
T Consensus       269 lGyr  272 (296)
T KOG0502|consen  269 LGYR  272 (296)
T ss_pred             hhhH
Confidence            9984

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=7.1e-18  Score=151.43  Aligned_cols=88  Identities=11%  Similarity=0.091  Sum_probs=76.8

Q ss_pred             hhcCcchHHHHHHHcCc----HHHHHHHHHhCCCceeeccC-CCccHHHHHHhcCChhHHHHHHhc-CCccccccccccC
Q 011338          172 EKVGIKKVVFIAVKHGI----VEFITEIMKHYPDIIWCYDD-YNRHIFSYATLQRQEKIFNLIYTM-GAKKNSVATNWDK  245 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~----~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~~~~D~  245 (488)
                      +|..|+||||+|+..|+    .++++.|++.+++.. .+|. +|+||||+|+.+++.+++++|++. +.+    ++.+|.
T Consensus        56 ~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~----~~~~n~  130 (169)
T PHA02741         56 TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID----LHFCNA  130 (169)
T ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----CCcCCC
Confidence            67789999999999999    589999999988854 4464 899999999999999999999974 655    789999


Q ss_pred             CCCcHHHHHHHhCCCCCcc
Q 011338          246 AHNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       246 ~G~TpLhlA~~~~~~~~v~  264 (488)
                      +|.||||+|+..++.++++
T Consensus       131 ~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741        131 DNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             CCCCHHHHHHHCCCHHHHH
Confidence            9999999999999866553

>PHA02792 ankyrin-like protein; Provisional

Probab=99.74  E-value=2.1e-17  Score=171.63  Aligned_cols=226  Identities=10%  Similarity=0.007  Sum_probs=146.0

Q ss_pred             CCCCCchhHHHHHHHcC-------CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338           17 DKGTNGAMLLTSCIIDD-------IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g-------~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      .+|..|.||||+|+.++       +.|+++.||+++. .++.+|..|.||||+|+.+.+.     ..++++.|+..+.+-
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~-~~~~~d~~g~t~l~~~~~~~~i-----~~ei~~~L~~~~~~~  243 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK-EMRYYTYREHTTLYYYVDKCDI-----KREIFDALFDSNYSG  243 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC-CcCccCCCCChHHHHHHHcccc-----hHHHHHHHHhccccc
Confidence            46778999999999999       8999999999954 4788999999999999988621     234445444332210


Q ss_pred             ---hhccc-------cCCCCCCCCC---------CC-------CC-CCc-------------hhhhhHHHHHH--HHHHH
Q 011338           90 ---RSAYA-------SNNISHGDIE---------RP-------HQ-GPA-------------EHKNFFTRAMT--KLLHM  127 (488)
Q Consensus        90 ---~~~~~-------~~~~~~~~~~---------~~-------~~-~~~-------------~~t~l~~a~~~--~~~~~  127 (488)
                         ..+..       ...+...|..         .+       .. +..             .+--||.=...  -+.++
T Consensus       244 ~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~iei  323 (631)
T PHA02792        244 NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINV  323 (631)
T ss_pred             cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHH
Confidence               00000       0000011100         00       00 000             00000000000  12355


Q ss_pred             HHHHhhccchhhhh--HHHH-HHhhHhHHHHHHHHhhhhcccCchhhhhcC--cchHHHHHHHcCcH---HHHHHHHHhC
Q 011338          128 VWKSLNLFVPAIKH--IYEV-KLAHVQTQELLSCVCREISTQGESQFEKVG--IKKVVFIAVKHGIV---EFITEIMKHY  199 (488)
Q Consensus       128 ~~~ll~~~~~~~~~--~~~~-~~~h~~~~~il~~l~~~~~~~~~~~~~~~~--g~tpLh~Aa~~G~~---~~v~~Ll~~~  199 (488)
                      ++.+++.|....+.  ...- ...+.+..++++.|++++++.+.   +|.+  +.||||+|+..+..   ++++.|++++
T Consensus       324 IK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~---kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G  400 (631)
T PHA02792        324 IKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVE---DDDNIINIMPLFPTLSIHESDVLSILKLCKPYI  400 (631)
T ss_pred             HHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhh---hcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC
Confidence            66666666432210  0000 00123456899999999887755   4444  57999998877665   4678889998


Q ss_pred             CCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          200 PDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       200 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      ++. +.+|..|+||||+|+..++.+++++|++.|++    +|.+|..|+||||+|+.
T Consensus       401 ADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD----IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        401 DDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGAD----INITTKYGSTCIGICVI  452 (631)
T ss_pred             Ccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH
Confidence            885 45699999999999999999999999999987    79999999999999986

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.72  E-value=2.6e-17  Score=145.09  Aligned_cols=214  Identities=14%  Similarity=0.003  Sum_probs=156.9

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      ++..|...+-.+.+.|+.|++..++.-+|+-+...|.+|++++|.++-.++......-       +              
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~stt-------l--------------  116 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTT-------L--------------  116 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeee-------e--------------
Confidence            5667778888899999999999999988888888888999999999887743211000       0              


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                       .+ ..+.++.+..+-+++..++...+++.+..+.+.                              .++.   .|..|.
T Consensus       117 -tN-~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n------------------------------~VN~---~De~Gf  161 (296)
T KOG0502|consen  117 -TN-GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN------------------------------KVNA---CDEFGF  161 (296)
T ss_pred             -cc-cccCCccccccCChhhHHHHHHHHHHHHHHhhc------------------------------cccC---ccccCc
Confidence             00 111222334455566555544433333322111                              1122   577899


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      |||.||+..|++++|++|++.+++.. ..-+...++|.+|+..|..++|++|+.++.+    +|.-|.+|-|||-+|++.
T Consensus       162 TpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resALsLAt~ggytdiV~lLL~r~vd----VNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  162 TPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESALSLATRGGYTDIVELLLTREVD----VNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             hHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhHhHHhcCChHHHHHHHHhcCCC----cceeccCCCceeeeeecC
Confidence            99999999999999999999998853 4477888999999999999999999999876    899999999999999999


Q ss_pred             CCCCCcccccchHHhhHHHHhHHHHHHhhcc-chhHHHhhcCCCCchhhhhHHHHH
Q 011338          258 APSSQLDRVSGAALQMQRELQWFKEVESIVQ-PKYKEMVNLHYKTPRALFSDQHKK  312 (488)
Q Consensus       258 ~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n~~G~tp~~l~~~~~~~  312 (488)
                      ++.++++.                    ++. ..+.+..+..|.+++|++......
T Consensus       237 nhvkcve~--------------------Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  237 NHVKCVES--------------------LLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             ChHHHHHH--------------------HHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            98765543                    222 356677788899999988664433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.72  E-value=4.8e-18  Score=150.17  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=76.1

Q ss_pred             hhcCcchHHHHHHHcCcH---HHHHHHHHhCCCceeecc-CCCccHHHHHHhcCChhHHHHHHhc-CCccccccccccCC
Q 011338          172 EKVGIKKVVFIAVKHGIV---EFITEIMKHYPDIIWCYD-DYNRHIFSYATLQRQEKIFNLIYTM-GAKKNSVATNWDKA  246 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~---~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~~~~D~~  246 (488)
                      +|.+|+||||+|+..|+.   +++++|++.+.+.. .+| .+|+||||+|+..++.+++++|+.. +.+    ++.+|..
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d----~n~~~~~  125 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-GKERVFGNTPLHIAVYTQNYELATWLCNQPGVN----MEILNYA  125 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC----CccccCC
Confidence            577899999999999987   46889999988754 456 5899999999999999999999974 655    7899999


Q ss_pred             CCcHHHHHHHhCCCCCcc
Q 011338          247 HNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       247 G~TpLhlA~~~~~~~~v~  264 (488)
                      |.||||+|+..|+.++++
T Consensus       126 g~tpL~~A~~~~~~~i~~  143 (154)
T PHA02736        126 FKTPYYVACERHDAKMMN  143 (154)
T ss_pred             CCCHHHHHHHcCCHHHHH
Confidence            999999999998866553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-15  Score=158.27  Aligned_cols=183  Identities=14%  Similarity=0.158  Sum_probs=131.3

Q ss_pred             CCCCCchhHHHHHHH---cCCccHHHHHHHhCccccccc----cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338           17 DKGTNGAMLLTSCII---DDIFDIPLDLLQRYRKLAYAQ----DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~---~g~~div~~LL~~~~~~~~~~----d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      ++...|.|.||.|.-   .++.++++.||+..|.++|..    ...|+||||+|+.+.       +.+++..|+....+|
T Consensus       138 ~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~-------~~~~V~lLl~~gADV  210 (782)
T KOG3676|consen  138 ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNR-------DAELVRLLLAAGADV  210 (782)
T ss_pred             cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhc-------cHHHHHHHHHcCCch
Confidence            468899999999987   456689999999999887743    356999999999887       344555555444433


Q ss_pred             hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCch
Q 011338           90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES  169 (488)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~  169 (488)
                      ..-      ..+++             +.+                      -+ .+..        +    ...++.  
T Consensus       211 ~aR------a~G~F-------------F~~----------------------~d-qk~~--------r----k~T~Y~--  234 (782)
T KOG3676|consen  211 HAR------ACGAF-------------FCP----------------------DD-QKAS--------R----KSTNYT--  234 (782)
T ss_pred             hhH------hhccc-------------cCc----------------------cc-cccc--------c----cccCCc--
Confidence            110      00000             000                      00 0000        0    000000  


Q ss_pred             hhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338          170 QFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN  249 (488)
Q Consensus       170 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  249 (488)
                       -.-.-|..||.+||.-++.|++++|+++++|.. .+|.+|+|+||+.+.+-..+..+++++.|++  .+...+|++|-|
T Consensus       235 -G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLT  310 (782)
T KOG3676|consen  235 -GYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLT  310 (782)
T ss_pred             -ceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCC
Confidence             012458999999999999999999999888865 5599999999999999999999999999876  456788999999


Q ss_pred             HHHHHHHhCCCCCcccc
Q 011338          250 ILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~l  266 (488)
                      ||-+||+.|+.++.+.+
T Consensus       311 PLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  311 PLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             hHHHHHHhhhHHHHHHH
Confidence            99999999998776443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.69  E-value=6.1e-17  Score=144.79  Aligned_cols=88  Identities=9%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             hhcCcchHHHHHHHcCcHHH---HHHHHHhCCCceeecc-CCCccHHHHHHhcCChhHHHHHHh-cCCccccccccccCC
Q 011338          172 EKVGIKKVVFIAVKHGIVEF---ITEIMKHYPDIIWCYD-DYNRHIFSYATLQRQEKIFNLIYT-MGAKKNSVATNWDKA  246 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~---v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~D~~  246 (488)
                      +|.+|+||||+|+..|+.+.   +++|++.+.+.. .+| ..|+||||+|+.+|+.+++++|+. .+++    ++.+|.+
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~  127 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVN----LGAINYQ  127 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC----ccCcCCC
Confidence            57789999999999998654   789999988754 556 589999999999999999999995 6765    7899999


Q ss_pred             CCcHHHHHHHhCCCCCcc
Q 011338          247 HNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       247 G~TpLhlA~~~~~~~~v~  264 (488)
                      |+||||+|+..++.++++
T Consensus       128 g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743        128 HETAYHIAYKMRDRRMME  145 (166)
T ss_pred             CCCHHHHHHHcCCHHHHH
Confidence            999999999999866553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.68  E-value=2.5e-16  Score=152.11  Aligned_cols=140  Identities=13%  Similarity=0.020  Sum_probs=107.6

Q ss_pred             CCCCchh-HHHHHHHcCCccHHHHHHHhCccccccc----cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhc
Q 011338           18 KGTNGAM-LLTSCIIDDIFDIPLDLLQRYRKLAYAQ----DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSA   92 (488)
Q Consensus        18 ~d~~G~T-~LH~A~~~g~~div~~LL~~~~~~~~~~----d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~   92 (488)
                      +|.+|.| +||.|+..|+.+++++|++++. +++.+    |.+|.||||+|+..++                        
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GA-diN~~~~~sd~~g~TpLh~Aa~~~~------------------------   82 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGA-DPEAPFPLSENSKTNPLIYAIDCDN------------------------   82 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCC-CccccCcccCCCCCCHHHHHHHcCC------------------------
Confidence            4555554 6777788899999999999965 46766    4689999999998882                        


Q ss_pred             cccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhh
Q 011338           93 YASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFE  172 (488)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~  172 (488)
                                                                                  .++++.|++.+++.+..  .
T Consensus        83 ------------------------------------------------------------~eivklLL~~GADVN~~--~  100 (300)
T PHA02884         83 ------------------------------------------------------------DDAAKLLIRYGADVNRY--A  100 (300)
T ss_pred             ------------------------------------------------------------HHHHHHHHHcCCCcCcc--c
Confidence                                                                        23455555665555431  1


Q ss_pred             hcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHH
Q 011338          173 KVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILH  252 (488)
Q Consensus       173 ~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLh  252 (488)
                      +..|.||||.|+..|+.++++.|++.+++.. .+|..|+||||+|++.++.+++..+..         +..|..|.+|++
T Consensus       101 ~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~  170 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICD---------NEISNFYKHPKK  170 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcC---------CcccccccChhh
Confidence            3469999999999999999999999988854 568999999999999998888765542         235778889999


Q ss_pred             HH
Q 011338          253 QA  254 (488)
Q Consensus       253 lA  254 (488)
                      ++
T Consensus       171 ~~  172 (300)
T PHA02884        171 IL  172 (300)
T ss_pred             hh
Confidence            75

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.68  E-value=1.8e-16  Score=134.88  Aligned_cols=127  Identities=15%  Similarity=0.020  Sum_probs=100.6

Q ss_pred             hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcH
Q 011338          171 FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNI  250 (488)
Q Consensus       171 ~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  250 (488)
                      .+|.+|.||||.|+.+||.+||+.|+..+++. +.+...||||||-||+..+.+++.+|++.|++    +|++.+...||
T Consensus        92 trD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD----VnA~t~g~ltp  166 (228)
T KOG0512|consen   92 TRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD----VNAQTKGLLTP  166 (228)
T ss_pred             ccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhHHHHHHhccCc----ccccccccchh
Confidence            38999999999999999999999999998885 45688999999999999999999999999987    89999999999


Q ss_pred             HHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhc--cchhHHHhhcCCCCchhhhhHH--HHHHHHhhHHHH
Q 011338          251 LHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIV--QPKYKEMVNLHYKTPRALFSDQ--HKKLVEQGEKWM  321 (488)
Q Consensus       251 LhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n~~G~tp~~l~~~~--~~~l~~~~~~~~  321 (488)
                      ||+||...+...-                   +.-++  +......+|+.|.||++++.+.  ...+.+..++.+
T Consensus       167 Lhlaa~~rn~r~t-------------------~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e~~~  222 (228)
T KOG0512|consen  167 LHLAAGNRNSRDT-------------------LELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVEGCM  222 (228)
T ss_pred             hHHhhcccchHHH-------------------HHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHHHHh
Confidence            9999987653210                   11111  1233567889999999998764  344555444433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.65  E-value=8.2e-17  Score=168.93  Aligned_cols=268  Identities=13%  Similarity=0.004  Sum_probs=204.1

Q ss_pred             ccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhh
Q 011338           12 AELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRS   91 (488)
Q Consensus        12 ~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~   91 (488)
                      ...++....+=.|+|..||.+||.|+|++|+.++ ..+..+|+.|.+||.+|+-.|       +...++.++....+++ 
T Consensus       747 ~~id~~Te~n~~t~LT~acaggh~e~vellv~rg-aniehrdkkgf~plImaatag-------h~tvV~~llk~ha~ve-  817 (2131)
T KOG4369|consen  747 TVIDPLTEPNIKTNLTSACAGGHREEVELLVVRG-ANIEHRDKKGFVPLIMAATAG-------HITVVQDLLKAHADVE-  817 (2131)
T ss_pred             eeeccccCccccccccccccCccHHHHHHHHHhc-ccccccccccchhhhhhcccC-------chHHHHHHHhhhhhhh-
Confidence            3444445667789999999999999999999994 457899999999999999988       4556666665544442 


Q ss_pred             ccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHh----hHhHHHHHHHHhhhhccc
Q 011338           92 AYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLA----HVQTQELLSCVCREISTQ  166 (488)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~----h~~~~~il~~l~~~~~~~  166 (488)
                                    .++++.+.|+|-.|+..+..++++.||+.+... -+.+.+-...    ..+.+++++.++..+..+
T Consensus       818 --------------aQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseI  883 (2131)
T KOG4369|consen  818 --------------AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEI  883 (2131)
T ss_pred             --------------hhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccc
Confidence                          245667788999999999999999999887432 1112111111    246789999999988777


Q ss_pred             CchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCC
Q 011338          167 GESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKA  246 (488)
Q Consensus       167 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~  246 (488)
                      +... ..+.|-.||.+|+.+||.+.++.|++.+.++......+.+|+|-+|+..|+.+++.+|+...++    +..+-+.
T Consensus       884 nSrt-gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an----vehRakt  958 (2131)
T KOG4369|consen  884 NSRT-GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN----VEHRAKT  958 (2131)
T ss_pred             cccc-ccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh----hhhhccc
Confidence            6532 3456899999999999999999999999998888888999999999999999999999988654    6788899


Q ss_pred             CCcHHHHHHHhCCCCCcccccc---------------hHHhhHHHHhHHHHHHhhccc-hhHHHhhcCCCCchhhhh
Q 011338          247 HNNILHQAAFLAPSSQLDRVSG---------------AALQMQRELQWFKEVESIVQP-KYKEMVNLHYKTPRALFS  307 (488)
Q Consensus       247 G~TpLhlA~~~~~~~~v~~l~~---------------~~l~~~~~l~~~~~v~~~~~~-~~~~~~n~~G~tp~~l~~  307 (488)
                      |-|||.-++..|..++-+.|..               .++-...+-...+.+.+++++ .-.+++|++|.|++.++.
T Consensus       959 gltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen  959 GLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLAS 1035 (2131)
T ss_pred             CCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhc
Confidence            9999999999998776554421               111111222234556666654 456889999999997753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.64  E-value=9.6e-16  Score=130.42  Aligned_cols=146  Identities=12%  Similarity=-0.008  Sum_probs=114.5

Q ss_pred             hhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCC
Q 011338           23 AMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGD  102 (488)
Q Consensus        23 ~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~  102 (488)
                      .-.+-+|+..+....|+.||+..+..+|.+|.+|.||||-|+.+|+                                  
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h----------------------------------  109 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGH----------------------------------  109 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCc----------------------------------
Confidence            3456789999999999999999999999999999999999999982                                  


Q ss_pred             CCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHH
Q 011338          103 IERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFI  182 (488)
Q Consensus       103 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~  182 (488)
                                                                        +.+++.++..+++...   +...|+||||.
T Consensus       110 --------------------------------------------------~div~~ll~~gAn~~a---~T~~GWTPLhS  136 (228)
T KOG0512|consen  110 --------------------------------------------------LDIVHELLLSGANKEA---KTNEGWTPLHS  136 (228)
T ss_pred             --------------------------------------------------hHHHHHHHHccCCccc---ccccCccchhh
Confidence                                                              2333344443333322   56779999999


Q ss_pred             HHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCCh-hHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338          183 AVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQE-KIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       183 Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~  259 (488)
                      ||+..+.+++..||+++++.... ....+||||+||..++. ..+.+|+....   .....++..+.||+.+|-+.+-
T Consensus       137 AckWnN~~va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dry---i~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  137 ACKWNNFEVAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRY---IHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhcccchhHHHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccc---cChhhhcCccchHHHHHHHhhh
Confidence            99999999999999999986554 66679999999988765 45666665422   1245678889999999987754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.64  E-value=7.4e-16  Score=148.82  Aligned_cols=107  Identities=7%  Similarity=0.034  Sum_probs=86.2

Q ss_pred             HHHHHHhhhhcccCchh-hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          154 ELLSCVCREISTQGESQ-FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       154 ~il~~l~~~~~~~~~~~-~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      ++++.|++.+++.+... ..+..|.||||+|+..|+.+++++|++++++.....+..|.||||+|+.+++.+++++|++.
T Consensus        47 eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~  126 (300)
T PHA02884         47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY  126 (300)
T ss_pred             HHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            34445555555444311 12457999999999999999999999999886543356899999999999999999999999


Q ss_pred             CCccccccccccCCCCcHHHHHHHhCCCCCcc
Q 011338          233 GAKKNSVATNWDKAHNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       233 ~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~  264 (488)
                      |++    ++.+|.+|.||||+|+..++..++.
T Consensus       127 GAd----in~kd~~G~TpL~~A~~~~~~~~~~  154 (300)
T PHA02884        127 GAD----INIQTNDMVTPIELALMICNNFLAF  154 (300)
T ss_pred             CCC----CCCCCCCCCCHHHHHHHhCChhHHH
Confidence            987    7999999999999999988766543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.62  E-value=7.6e-16  Score=140.96  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=96.2

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      .|+.|.+|||+||+.||..+++.|+.+++.. +..|....||||+|+.+||.++|+.|++..++    +|+.+..|||||
T Consensus        30 gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kad----vnavnehgntpl  104 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD----VNAVNEHGNTPL  104 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhcc----cchhhccCCCch
Confidence            5778999999999999999999999998875 45577778999999999999999999998766    899999999999


Q ss_pred             HHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhc-cchhHHHhhcCCCCchhhhhHHHHH
Q 011338          252 HQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIV-QPKYKEMVNLHYKTPRALFSDQHKK  312 (488)
Q Consensus       252 hlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n~~G~tp~~l~~~~~~~  312 (488)
                      ||||.-|...+.                    +.++ .....++-|++|.||+|.+...-++
T Consensus       105 hyacfwgydqia--------------------edli~~ga~v~icnk~g~tpldkakp~l~~  146 (448)
T KOG0195|consen  105 HYACFWGYDQIA--------------------EDLISCGAAVNICNKKGMTPLDKAKPMLKN  146 (448)
T ss_pred             hhhhhhcHHHHH--------------------HHHHhccceeeecccCCCCchhhhchHHHH
Confidence            999999974432                    1222 2244678899999999987654443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.62  E-value=7e-16  Score=145.55  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=95.0

Q ss_pred             hhcCcchHHHHHHH-----cCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCC
Q 011338          172 EKVGIKKVVFIAVK-----HGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKA  246 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~-----~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~  246 (488)
                      +|.-|.||+.+|+.     ..+.++|..|.+.+ +.+..-...|+|+|++|+.+|+.++|+.|+..|++    +|.+|.+
T Consensus       298 qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd----VNiQDdD  372 (452)
T KOG0514|consen  298 QNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD----VNIQDDD  372 (452)
T ss_pred             cccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC----CccccCC
Confidence            56779999998885     45788999998764 54545567899999999999999999999999988    8999999


Q ss_pred             CCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          247 HNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       247 G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      |.|+|+.|+..||.+|++.|.                  -.|..+..+.|.+|.|++.++-+
T Consensus       373 GSTALMCA~EHGhkEivklLL------------------A~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  373 GSTALMCAAEHGHKEIVKLLL------------------AVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             ccHHHhhhhhhChHHHHHHHh------------------ccCcccceeecCCCchhhhhHHh
Confidence            999999999999988764431                  12556778889999999998754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.61  E-value=1.4e-15  Score=150.69  Aligned_cols=205  Identities=12%  Similarity=0.038  Sum_probs=129.7

Q ss_pred             HHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCC
Q 011338           25 LLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIE  104 (488)
Q Consensus        25 ~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~  104 (488)
                      .+.-|+..|.++-|..|+..+. .++..|.+|.|+||-+|.-.       +..+++.++.....|               
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga-~~~~~n~DglTalhq~~id~-------~~e~v~~l~e~ga~V---------------   99 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGA-SPNLCNVDGLTALHQACIDD-------NLEMVKFLVENGANV---------------   99 (527)
T ss_pred             HHHhccccccHHHHHHHhccCC-CccccCCccchhHHHHHhcc-------cHHHHHHHHHhcCCc---------------
Confidence            4566899999999999998864 45889999999999998776       344455544433322               


Q ss_pred             CCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH---
Q 011338          105 RPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF---  181 (488)
Q Consensus       105 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh---  181 (488)
                       ...++.+.||+|.|+-+++.                            .++..++..+..+..   .|.+|..|+-   
T Consensus       100 -n~~d~e~wtPlhaaascg~~----------------------------~i~~~li~~gA~~~a---vNsdg~~P~dl~e  147 (527)
T KOG0505|consen  100 -NAQDNEGWTPLHAAASCGYL----------------------------NIVEYLIQHGANLLA---VNSDGNMPYDLAE  147 (527)
T ss_pred             -cccccccCCcchhhcccccH----------------------------HHHHHHHHhhhhhhh---ccCCCCCcccccc
Confidence             12455666777766555433                            233333333332221   1222222211   


Q ss_pred             ---------HHH-HcCc-HH------------HHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccc
Q 011338          182 ---------IAV-KHGI-VE------------FITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNS  238 (488)
Q Consensus       182 ---------~Aa-~~G~-~~------------~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  238 (488)
                               .+. ..|. ++            =++..+..+.. ....+..|.|.||+|+.+|..++.++|++.|.+   
T Consensus       148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~---  223 (527)
T KOG0505|consen  148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARGATALHVAAANGYTEVAALLLQAGYS---  223 (527)
T ss_pred             CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHHHHHhccC---
Confidence                     111 1111 01            01111222222 233355699999999999999999999999876   


Q ss_pred             ccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          239 VATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       239 ~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                       ++.+|.+|+||||.|+.-|+.+..+.+.                   ........+++.|+||+|++.+
T Consensus       224 -~~~~D~dgWtPlHAAA~Wg~~~~~elL~-------------------~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  224 -VNIKDYDGWTPLHAAAHWGQEDACELLV-------------------EHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             -cccccccCCCcccHHHHhhhHhHHHHHH-------------------HhhcccchhhhcCCCCccchhh
Confidence             7999999999999999999865443211                   1224456788899999999866

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.60  E-value=9.7e-16  Score=156.78  Aligned_cols=199  Identities=15%  Similarity=0.099  Sum_probs=153.6

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      ++.|++..+-.++   .|..|.+|||+|+..|+.|+++.|+... +..|..+..|.||||+||+.|       ++..+..
T Consensus        65 s~llle~ea~ldl---~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhg-------h~dvv~~  133 (854)
T KOG0507|consen   65 SKLLLDYEALLDL---CDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHG-------HLEVVFY  133 (854)
T ss_pred             HHHHhcchhhhhh---hhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhc-------chHHHHH
Confidence            4667777666666   4688999999999999999999999985 778999999999999999999       4556666


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                      |+....                +....++.+.|++-.|+..+..++++.++...-+.-               .   +..
T Consensus       134 Ll~~~a----------------dp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~---------------~---~~~  179 (854)
T KOG0507|consen  134 LLKKNA----------------DPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQ---------------S---SLR  179 (854)
T ss_pred             HHhcCC----------------CccccCcccccHHHHHHHhhhhHHHHHHhhhccchh---------------h---ccc
Confidence            654321                112356677889999999998988888877631110               0   111


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                      .    . ...++-.+-+|||.|+++||.++++.|+..+-+.. ...++ -|+||.|+..|..++|++|++.|.+    ..
T Consensus       180 ~----~-~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din-~~t~~-gtalheaalcgk~evvr~ll~~gin----~h  248 (854)
T KOG0507|consen  180 V----G-DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN-YTTED-GTALHEAALCGKAEVVRFLLEIGIN----TH  248 (854)
T ss_pred             C----C-CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc-ccccc-chhhhhHhhcCcchhhhHHHhhccc----cc
Confidence            0    1 11245668899999999999999999999887754 33444 4999999999999999999999876    68


Q ss_pred             cccCCCCcHHHHHHH
Q 011338          242 NWDKAHNNILHQAAF  256 (488)
Q Consensus       242 ~~D~~G~TpLhlA~~  256 (488)
                      .+|.+|.|+|.+-..
T Consensus       249 ~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  249 IKNQHGQTALDIIID  263 (854)
T ss_pred             cccccchHHHHHHHh
Confidence            999999999987544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.6e-15  Score=138.90  Aligned_cols=73  Identities=16%  Similarity=0.262  Sum_probs=45.9

Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      .||||+||..||.++|+.|++..++. +.+|..|+||||+||..|+..+.+-|+..|+.    ++.-+++|.|||.-|
T Consensus        68 dtplhlaaahghrdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~----v~icnk~g~tpldka  140 (448)
T KOG0195|consen   68 DTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAA----VNICNKKGMTPLDKA  140 (448)
T ss_pred             CcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccce----eeecccCCCCchhhh
Confidence            46666666666666666666665553 34466666666666666666666666666654    566666666666543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.53  E-value=8.5e-14  Score=117.18  Aligned_cols=124  Identities=18%  Similarity=0.268  Sum_probs=90.9

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      +|.+|.||||+|+..|+.++++.|++.++. .+..|..|.||||+|+..++       .                     
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~-------~---------------------   53 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGH-------L---------------------   53 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCC-------H---------------------
Confidence            467899999999999999999999988554 36778889999999888872       1                     


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                                                              ++++.+++.+...+.   .+..|.
T Consensus        54 --------------------------------------------------------~~~~~ll~~~~~~~~---~~~~~~   74 (126)
T cd00204          54 --------------------------------------------------------EIVKLLLEKGADVNA---RDKDGN   74 (126)
T ss_pred             --------------------------------------------------------HHHHHHHHcCCCccc---cCCCCC
Confidence                                                                    122222222211111   345678


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHH
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIY  230 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  230 (488)
                      ||+|+|++.|+.++++.|++.+.+. ...|..|.||+|+|+..++.+++++|+
T Consensus        75 ~~l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          75 TPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            8999999988888998888876553 344788888888888888888888763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.46  E-value=6.6e-14  Score=111.44  Aligned_cols=76  Identities=25%  Similarity=0.307  Sum_probs=65.5

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338          180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~  259 (488)
                      ||+||+.|+.++++.|++.+++.    +. |+||||+|+.+|+.+++++|++.|.+    ++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~----~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI----NL-GNTALHYAAENGNLEIVKLLLENGAD----INSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT----TS-SSBHHHHHHHTTTHHHHHHHHHTTTC----TT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC----CC-CCCHHHHHHHcCCHHHHHHHHHhccc----ccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999977654    22 89999999999999999999999876    78999999999999999988


Q ss_pred             CCCcc
Q 011338          260 SSQLD  264 (488)
Q Consensus       260 ~~~v~  264 (488)
                      .++++
T Consensus        72 ~~~~~   76 (89)
T PF12796_consen   72 LEIVK   76 (89)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.45  E-value=4.4e-13  Score=112.79  Aligned_cols=87  Identities=18%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      ++..|.||+|.|+..++.++++.|++.++.. ...|..|.||+|+|+..++.+++++|++.+.+    ++..|..|.|||
T Consensus        36 ~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~----~~~~~~~~~~~l  110 (126)
T cd00204          36 KDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGAD----VNARDKDGRTPL  110 (126)
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CcccCCCCCCHH
Confidence            5678999999999999999999999998754 45588999999999999999999999998754    688999999999


Q ss_pred             HHHHHhCCCCCc
Q 011338          252 HQAAFLAPSSQL  263 (488)
Q Consensus       252 hlA~~~~~~~~v  263 (488)
                      |+|...++.+++
T Consensus       111 ~~~~~~~~~~~~  122 (126)
T cd00204         111 HLAAKNGHLEVV  122 (126)
T ss_pred             HHHHhcCCHHHH
Confidence            999998765433

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.42  E-value=1e-13  Score=146.12  Aligned_cols=249  Identities=11%  Similarity=0.013  Sum_probs=161.3

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |++|+.+++..+.   +|+.|.+||-.|+..||..+|+.|+++..++-...|+.+.|+|-+||..|       +.+.++.
T Consensus       773 vellv~rganieh---rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsgg-------r~~vvel  842 (2131)
T KOG4369|consen  773 VELLVVRGANIEH---RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGG-------RTRVVEL  842 (2131)
T ss_pred             HHHHHHhcccccc---cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCC-------cchHHHH
Confidence            6788888888877   89999999999999999999999999988777778899999999999988       4556666


Q ss_pred             HhhhhhhhhhccccCC-CCC-----------------C-CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhH
Q 011338           82 WIYSFIYIRSAYASNN-ISH-----------------G-DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHI  142 (488)
Q Consensus        82 li~~~~~v~~~~~~~~-~~~-----------------~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~  142 (488)
                      ||.....-+.-.++.. +..                 + .+....+..-|-.||+.+.+.++...+..+++.+.+.-..+
T Consensus       843 Ll~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqI  922 (2131)
T KOG4369|consen  843 LLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQI  922 (2131)
T ss_pred             HHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcccc
Confidence            6654443221111100 000                 0 11122234568889999999999999999988774321111


Q ss_pred             HHHHHh------hHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCC---------------
Q 011338          143 YEVKLA------HVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPD---------------  201 (488)
Q Consensus       143 ~~~~~~------h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~---------------  201 (488)
                      .-...+      -.+.-+++..|+..-.....   +-..|.|||.-+|..|.+|+=++||..++|               
T Consensus       923 eTNrnTaltla~fqgr~evv~lLLa~~anveh---Raktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalt  999 (2131)
T KOG4369|consen  923 ETNRNTALTLALFQGRPEVVFLLLAAQANVEH---RAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALT  999 (2131)
T ss_pred             ccccccceeeccccCcchHHHHHHHHhhhhhh---hcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccce
Confidence            100000      01122333333333222211   334455555555555555544444443332               


Q ss_pred             -------------------ceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCC
Q 011338          202 -------------------IIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQ  262 (488)
Q Consensus       202 -------------------~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~  262 (488)
                                         .....|++|.|+|-+|+..|+...+..|++.+++    .+.+|+.-+|++.-|.+.|+.+|
T Consensus      1000 i~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad----~d~qdnr~~S~~maafRKgh~~i 1075 (2131)
T KOG4369|consen 1000 IPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD----ADQQDNRTNSRTMAAFRKGHFAI 1075 (2131)
T ss_pred             eecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccC----hhhhhcccccccHHHHHhchhhe
Confidence                               2345577888888888888888888888888776    57888888888888888888888


Q ss_pred             ccccc
Q 011338          263 LDRVS  267 (488)
Q Consensus       263 v~~l~  267 (488)
                      |+...
T Consensus      1076 Vk~mv 1080 (2131)
T KOG4369|consen 1076 VKKMV 1080 (2131)
T ss_pred             ecccc
Confidence            87653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.41  E-value=1.2e-12  Score=104.21  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccccccc
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWD  244 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D  244 (488)
                      |.||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|+.+|+.+++++|++.|.+    ++.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIVKLLLEHGAD----VNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-----TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcC
Confidence            789999999999999999999998876 45589999999999999999999999999876    55554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.39  E-value=3.4e-12  Score=132.77  Aligned_cols=116  Identities=18%  Similarity=0.187  Sum_probs=88.7

Q ss_pred             hcCcchHHHHHHHcCcHHHHHHHHHhCCCceee--------cc--------------CCCccHHHHHHhcCChhHHHHHH
Q 011338          173 KVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWC--------YD--------------DYNRHIFSYATLQRQEKIFNLIY  230 (488)
Q Consensus       173 ~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~--------~d--------------~~g~t~Lh~A~~~~~~~iv~~Ll  230 (488)
                      ...|.||||+|..+.+.++|++|++.++|....        .|              ..|+.||.+|+.-+|.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            456999999999999999999999988774211        11              24788999999999999999999


Q ss_pred             hcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          231 TMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       231 ~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      +++++    +|++|.+|||.||..+..-..           +|      ++.+-..-......++|++|.||+.++.+.
T Consensus       261 ~~gAd----~~aqDS~GNTVLH~lVi~~~~-----------~M------y~~~L~~ga~~l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  261 AHGAD----PNAQDSNGNTVLHMLVIHFVT-----------EM------YDLALELGANALEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             hcCCC----CCccccCCChHHHHHHHHHHH-----------HH------HHHHHhcCCCccccccccCCCChHHHHHHh
Confidence            99987    799999999999998876211           11      111111111123568999999999998664

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=7.6e-13  Score=95.24  Aligned_cols=56  Identities=23%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             HHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          195 IMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       195 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      ||+.++...+..|..|+||||+|+.+|+.+++++|++.+.+    ++.+|++|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----CCCCcCCCCCHHHhC
Confidence            46666555667799999999999999999999999987776    789999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=7e-12  Score=89.62  Aligned_cols=54  Identities=20%  Similarity=0.316  Sum_probs=43.0

Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHH
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIY  230 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  230 (488)
                      |+||||+||+.|+.+++++|++.+.++. .+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            6799999999999999999999987754 45999999999999999999999885

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.26  E-value=2.7e-11  Score=112.91  Aligned_cols=136  Identities=15%  Similarity=0.150  Sum_probs=106.4

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      ..+..+.+++|.++..+..+++.+++..+.+. +.+|.+|.||||+|+..++.                           
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~---------------------------  119 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNP---------------------------  119 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCc---------------------------
Confidence            35666899999999999999999999986654 99999999999999999831                           


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                                              ..                            ...++++.+++.+...+....+|.+|
T Consensus       120 ------------------------~~----------------------------~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666         120 ------------------------PE----------------------------GNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             ------------------------cc----------------------------chHHHHHHHHHcCCCCCCccccCCCC
Confidence                                    00                            11234444444444111222358889


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      .||||+|+..|+.++++.|++.+++.. .+|..|.|++|.|+..++.++++.+.+.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999988754 45889999999999999999999998864

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.26  E-value=2.3e-11  Score=113.43  Aligned_cols=88  Identities=16%  Similarity=0.168  Sum_probs=81.2

Q ss_pred             hhcCcchHHHHHHHcCc-----HHHHHHHHHhCC--CceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccccccc
Q 011338          172 EKVGIKKVVFIAVKHGI-----VEFITEIMKHYP--DIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWD  244 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~-----~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D  244 (488)
                      ++.+|.||||+|+..|+     .++++.|++.++  +.....|..|+||||+|+..|+.+++++|++.+++    ++..|
T Consensus       102 ~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~----~~~~~  177 (235)
T COG0666         102 KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD----PNSRN  177 (235)
T ss_pred             ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCC----Ccccc
Confidence            78899999999999999     999999999999  67777799999999999999999999999999876    67889


Q ss_pred             CCCCcHHHHHHHhCCCCCc
Q 011338          245 KAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       245 ~~G~TpLhlA~~~~~~~~v  263 (488)
                      ..|.|+||.|+..++.+.+
T Consensus       178 ~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         178 SYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             cCCCcchhhhcccchHHHH
Confidence            9999999999999986654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.25  E-value=4.8e-12  Score=91.04  Aligned_cols=46  Identities=20%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHH
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDML   63 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~A   63 (488)
                      .+|.+|.||||+||..|+.+++++|+ ..+.+++.+|.+|+||||+|
T Consensus        11 ~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   11 AQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            48999999999999999999999999 55777999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.17  E-value=1.4e-11  Score=87.96  Aligned_cols=50  Identities=22%  Similarity=0.209  Sum_probs=40.4

Q ss_pred             CccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCc
Q 011338          210 NRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       210 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v  263 (488)
                      |+||||+|++.|+.+++++|++.+.+    +|.+|.+|+||||+|+..|+.+++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d----in~~d~~g~t~lh~A~~~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD----INAQDEDGRTPLHYAAKNGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG----TT-B-TTS--HHHHHHHTT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHccCHHHH
Confidence            78999999999999999999999876    899999999999999999986654

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.07  E-value=5e-10  Score=85.78  Aligned_cols=74  Identities=15%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHH
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILH  252 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLh  252 (488)
                      ..|++|||+||-.|..+++++|+..+++.. ..|+.|-|||.-|+..||.++|++|+++|+++    ..+-.+|.+.+.
T Consensus        32 ~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwEGH~~cVklLL~~GAdr----t~~~PdG~~~~e  105 (117)
T KOG4214|consen   32 YGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWEGHRDCVKLLLQNGADR----TIHAPDGTALIE  105 (117)
T ss_pred             hCCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHHhhHHHHHHHHHcCccc----ceeCCCchhHHh
Confidence            469999999999999999999999998854 56999999999999999999999999999873    556667766654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.06  E-value=6.4e-10  Score=120.51  Aligned_cols=94  Identities=12%  Similarity=0.028  Sum_probs=75.9

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc--
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM--  232 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~--  232 (488)
                      .++.|++.+.+.+.   +|.+|.||||+||..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|+++  
T Consensus        97 ~vk~LL~~Gadin~---~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~  172 (664)
T PTZ00322         97 GARILLTGGADPNC---RDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFREVVQLLSRHSQ  172 (664)
T ss_pred             HHHHHHHCCCCCCC---cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHhCCC
Confidence            33444444444433   6788999999999999999999999998875 46699999999999999999999999988  


Q ss_pred             -----CCccccccccccCCCCcHHHHHHH
Q 011338          233 -----GAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       233 -----~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                           +++    .+..+.+|++|+-.+..
T Consensus       173 ~~~~~ga~----~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        173 CHFELGAN----AKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             cccccCCC----CCccccCCCCccchhhh
Confidence                 443    57788888888876653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.01  E-value=4.3e-10  Score=121.81  Aligned_cols=84  Identities=15%  Similarity=0.071  Sum_probs=76.8

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      ++|+.|+..|+.+.++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++    +|.+|.+|+||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad----vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD----PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHC
Confidence            5699999999999999999998875 45699999999999999999999999999887    799999999999999999


Q ss_pred             CCCCCcccc
Q 011338          258 APSSQLDRV  266 (488)
Q Consensus       258 ~~~~~v~~l  266 (488)
                      |+.++++.|
T Consensus       159 g~~~iv~~L  167 (664)
T PTZ00322        159 GFREVVQLL  167 (664)
T ss_pred             CcHHHHHHH
Confidence            998877654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.99  E-value=2.5e-10  Score=87.44  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      --+.|+.++|..+-|+..+..+-+....  ..|++|||+|+-.|+.+++++|+..|++    ++.+|+.|-|||--|+..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~----i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGAN----IQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccc----cCCccccCCcHHHHHHHH
Confidence            3467999999999999999887554433  4899999999999999999999999987    899999999999999999


Q ss_pred             CCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          258 APSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       258 ~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      ||.+.|+.+..                   ...+..++-.+|++..+...+
T Consensus        78 GH~~cVklLL~-------------------~GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   78 GHRDCVKLLLQ-------------------NGADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             hhHHHHHHHHH-------------------cCcccceeCCCchhHHhhccH
Confidence            99776643311                   223344556678777766443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.96  E-value=1.5e-09  Score=99.95  Aligned_cols=91  Identities=13%  Similarity=0.113  Sum_probs=83.8

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +|.+|++||..|+.+|+.++++.|++.++|.+...+..+.||||.|+..|+.++.++|++.|+.    ....+.-|+|+-
T Consensus        41 ~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~----~~~vNsvgrTAa  116 (396)
T KOG1710|consen   41 RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR----MYLVNSVGRTAA  116 (396)
T ss_pred             cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCc----cccccchhhhHH
Confidence            7889999999999999999999999999998888899999999999999999999999999986    466677899999


Q ss_pred             HHHHHhCCCCCcccc
Q 011338          252 HQAAFLAPSSQLDRV  266 (488)
Q Consensus       252 hlA~~~~~~~~v~~l  266 (488)
                      .+|+..|+.+.|..+
T Consensus       117 qmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen  117 QMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHHhcchHHHHHH
Confidence            999999998877554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.95  E-value=3.9e-09  Score=97.31  Aligned_cols=123  Identities=13%  Similarity=0.123  Sum_probs=100.8

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      -..||..++..|..+-+..||.. -..+|.+|.+|.|||..|+.+|+       +                         
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGn-------l-------------------------   58 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGN-------L-------------------------   58 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCc-------H-------------------------
Confidence            36799999999999999999987 55689999999999999999993       2                         


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                                                                          ++++.+++.+.+++..  ++..+.||||
T Consensus        59 ----------------------------------------------------~~v~lll~~gaDvN~~--qhg~~YTpLm   84 (396)
T KOG1710|consen   59 ----------------------------------------------------TLVELLLELGADVNDK--QHGTLYTPLM   84 (396)
T ss_pred             ----------------------------------------------------HHHHHHHHhCCCcCcc--cccccccHHH
Confidence                                                                2333344444444432  4666899999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      +||-+|+.++.+.|++.+... ..+|+-|+|+-.+|+.-||.++|..+-..
T Consensus        85 FAALSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999998774 46699999999999999999999877544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=2.7e-09  Score=105.69  Aligned_cols=120  Identities=8%  Similarity=0.029  Sum_probs=90.9

Q ss_pred             HHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCC
Q 011338           25 LLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIE  104 (488)
Q Consensus        25 ~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~  104 (488)
                      .|.-|+..|.+|+|+.++.+ -.++...|.+|-||||-|++.|+                                    
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCagh------------------------------------  595 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGH------------------------------------  595 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcch------------------------------------
Confidence            45568888889999888877 44567778889999998888872                                    


Q ss_pred             CCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHH
Q 011338          105 RPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAV  184 (488)
Q Consensus       105 ~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa  184 (488)
                                                                      .+|++.|++.+.+++.   .|++|+||||+||
T Consensus       596 ------------------------------------------------yeIVkFLi~~ganVNa---~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  596 ------------------------------------------------YEIVKFLIEFGANVNA---ADSDGWTPLHCAA  624 (752)
T ss_pred             ------------------------------------------------hHHHHHHHhcCCcccC---ccCCCCchhhhhh
Confidence                                                            2455555555555554   6888999999999


Q ss_pred             HcCcHHHHHHHHHhCCCceeeccCCCccHHHHH--HhcCChhHHHHHHhc
Q 011338          185 KHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYA--TLQRQEKIFNLIYTM  232 (488)
Q Consensus       185 ~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~~  232 (488)
                      ..+++.+++.|++.++......-.++.|+..-+  .+.|...+.++|...
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999998887777777888886654  345677788888643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=4.1e-09  Score=104.40  Aligned_cols=93  Identities=11%  Similarity=0.046  Sum_probs=59.7

Q ss_pred             HHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          153 QELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       153 ~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      +++++..+.+..+..   .-++.|-|+||-|+..||.+||++|++.+.+.. ..|.+||||||+|+..++..+++.|++.
T Consensus       563 ldlVq~~i~ev~DpS---qpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~~ckqLVe~  638 (752)
T KOG0515|consen  563 LDLVQRIIYEVTDPS---QPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVPMCKQLVES  638 (752)
T ss_pred             HHHHHHHHHhhcCCC---CCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchHHHHHHHhc
Confidence            345555444332222   145667788888888888888888887777654 4477888888888887777788888777


Q ss_pred             CCccccccccccCCCCcHHH
Q 011338          233 GAKKNSVATNWDKAHNNILH  252 (488)
Q Consensus       233 ~~~~~~~~~~~D~~G~TpLh  252 (488)
                      |+.   +.-..=.|+.|+..
T Consensus       639 Gaa---vfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  639 GAA---VFASTLSDMETAAE  655 (752)
T ss_pred             cce---EEeeecccccchhh
Confidence            653   23334445555543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=3.3e-07  Score=90.50  Aligned_cols=91  Identities=12%  Similarity=0.028  Sum_probs=79.9

Q ss_pred             hhcCcch------HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccC
Q 011338          172 EKVGIKK------VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDK  245 (488)
Q Consensus       172 ~~~~g~t------pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~  245 (488)
                      +|++|.+      -||..++.|+.|..--||..+++....--.+|.||||+|++.|+..-+++|.-.|++    ++..|.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD----~~a~d~  198 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD----PGAQDS  198 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC----CCCCCC
Confidence            5555544      599999999999999999999987766677999999999999999999999999998    799999


Q ss_pred             CCCcHHHHHHHhCCCCCcccc
Q 011338          246 AHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       246 ~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      +|.||+.||-..||.++.+.+
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl  219 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERL  219 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHH
Confidence            999999999999997765444

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.41  E-value=2.4e-07  Score=96.54  Aligned_cols=88  Identities=15%  Similarity=0.084  Sum_probs=77.9

Q ss_pred             hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcH
Q 011338          171 FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNI  250 (488)
Q Consensus       171 ~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  250 (488)
                      ++|..|+|+||+|+..|..++++.|++++.+...+--..|+||||-|+.+|+.+++-+|++.|..    +..+|++|..|
T Consensus        47 ikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S----L~i~Dkeglsp  122 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS----LRIKDKEGLSP  122 (1267)
T ss_pred             HHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc----eEEecccCCCH
Confidence            36888999999999999999999999999987766456899999999999999999999999865    78999999999


Q ss_pred             HHHHHHhCCCCC
Q 011338          251 LHQAAFLAPSSQ  262 (488)
Q Consensus       251 LhlA~~~~~~~~  262 (488)
                      |..-++.....+
T Consensus       123 lq~~~r~~~~~i  134 (1267)
T KOG0783|consen  123 LQFLSRVLSSTI  134 (1267)
T ss_pred             HHHHhhcccccc
Confidence            999888544333

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.34  E-value=4.5e-07  Score=90.71  Aligned_cols=87  Identities=18%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCc-eeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDI-IWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNI  250 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  250 (488)
                      ++.+..+.||+|++.|+-|+|++||+++|.. ....|..|.|+||-|+..++..+.++|++.|+.    +...|..|.||
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas----l~ktd~kg~tp  970 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS----LRKTDSKGKTP  970 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh----heecccCCCCh
Confidence            5667889999999999999999999999863 355689999999999999999999999999876    78999999999


Q ss_pred             HHHHHHhCCCCC
Q 011338          251 LHQAAFLAPSSQ  262 (488)
Q Consensus       251 LhlA~~~~~~~~  262 (488)
                      -.-|-+.|+++.
T Consensus       971 ~eraqqa~d~dl  982 (1004)
T KOG0782|consen  971 QERAQQAGDPDL  982 (1004)
T ss_pred             HHHHHhcCCchH
Confidence            999999998764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.34  E-value=4.9e-07  Score=55.62  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=16.1

Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCC
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPD  201 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~  201 (488)
                      |+||||+||+.|+.|++++|++++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            55666666666666666666665544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.33  E-value=7.6e-07  Score=56.26  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=13.8

Q ss_pred             CccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          210 NRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       210 g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      |+||||+|+++|+.+++++|++.|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.31  E-value=2.2e-07  Score=91.32  Aligned_cols=91  Identities=12%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      ++.++..++.+||+.|.+..++-+.-.+.+ .+..|.+.+|+||+|+..|+.+++++|++..   ....+.+|..|+|||
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~---kv~~~~kDRw~rtPl  577 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNAC---KVDPDPKDRWGRTPL  577 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHH---cCCCChhhccCCCcc
Confidence            345677899999999999999988877766 5677999999999999999999999999873   234789999999999


Q ss_pred             HHHHHhCCCCCcccc
Q 011338          252 HQAAFLAPSSQLDRV  266 (488)
Q Consensus       252 hlA~~~~~~~~v~~l  266 (488)
                      .-|...+|.++++.|
T Consensus       578 DdA~~F~h~~v~k~L  592 (622)
T KOG0506|consen  578 DDAKHFKHKEVVKLL  592 (622)
T ss_pred             hHhHhcCcHHHHHHH
Confidence            999999997776544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.29  E-value=8.6e-07  Score=54.52  Aligned_cols=27  Identities=15%  Similarity=0.172  Sum_probs=25.5

Q ss_pred             CCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          209 YNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       209 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      +|+||||+|+.+|+.+++++|+++|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            599999999999999999999999876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.23  E-value=8.4e-07  Score=56.05  Aligned_cols=33  Identities=27%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDN   54 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~   54 (488)
                      +|+||||+|+..|+.+++++||+.+ ..++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCCC
Confidence            5899999999999999999999974 44676653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.15  E-value=1.8e-06  Score=85.08  Aligned_cols=61  Identities=13%  Similarity=0.137  Sum_probs=57.1

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      +|.+.+|+||+||..|+++++++|++.+......+|..|+|||--|...+|.+++++|-+.
T Consensus       535 ~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  535 KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence            6888999999999999999999999998877778899999999999999999999999775

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.11  E-value=3.1e-06  Score=84.89  Aligned_cols=80  Identities=14%  Similarity=0.055  Sum_probs=39.4

Q ss_pred             HHHHHHcCcHHHHHHHHH-hCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhC
Q 011338          180 VFIAVKHGIVEFITEIMK-HYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLA  258 (488)
Q Consensus       180 Lh~Aa~~G~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~  258 (488)
                      +|+++.....+-+...+. .-...+..+|..|+||||+|+.-|+.+.++.|+..+++    +..+|++|++|||.|+..|
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad----v~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD----VSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC----ccccccccccHHHHHHHcC
Confidence            555554444433333222 11222334455555555555555555555555555544    4555555555555555555


Q ss_pred             CCCCc
Q 011338          259 PSSQL  263 (488)
Q Consensus       259 ~~~~v  263 (488)
                      +.+++
T Consensus       100 ~~q~i  104 (560)
T KOG0522|consen  100 NEQII  104 (560)
T ss_pred             CHHHH
Confidence            54443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.02  E-value=1.1e-06  Score=91.93  Aligned_cols=93  Identities=13%  Similarity=0.128  Sum_probs=73.3

Q ss_pred             HHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccC-CCCcHHHHHHHhCCCCCcccccchH
Q 011338          192 ITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDK-AHNNILHQAAFLAPSSQLDRVSGAA  270 (488)
Q Consensus       192 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~-~G~TpLhlA~~~~~~~~v~~l~~~~  270 (488)
                      -.++-+.|.+..+..|..|||+||+|+..++.+++++|+++|.+    ++.+|. .|.||||-|...|+.+.+..+.   
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid----v~vqD~ESG~taLHRaiyyG~idca~lLL---  106 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID----VFVQDEESGYTALHRAIYYGNIDCASLLL---  106 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce----eeeccccccchHhhHhhhhchHHHHHHHH---
Confidence            34555677777888899999999999999999999999999987    788885 6999999999999976542220   


Q ss_pred             HhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhh
Q 011338          271 LQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFS  307 (488)
Q Consensus       271 l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~  307 (488)
                                      -......++|++|..|++...
T Consensus       107 ----------------~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  107 ----------------SKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             ----------------hcCCceEEecccCCCHHHHHh
Confidence                            122335677888888887653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.02  E-value=7.8e-06  Score=82.10  Aligned_cols=60  Identities=5%  Similarity=-0.095  Sum_probs=53.1

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      .|..|.|+||-|+..++..+..+|++.++.. ...|.+|.||-.-|-+.|..+...+|-.+
T Consensus       930 ~de~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  930 ADETGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhhhhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            4566999999999999999999999998875 46699999999999999999999988655

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.92  E-value=0.0027  Score=67.86  Aligned_cols=46  Identities=11%  Similarity=0.005  Sum_probs=36.9

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCcc---ccccccCCCChHHHHHhhCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRK---LAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~---~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      +.--.-.|+..|+.-.|+..++....   .+|.+|.-|+++||+|..+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~ne   73 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNE   73 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccc
Confidence            33445669999999999999988543   57788888999999998876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.88  E-value=5.4e-05  Score=76.57  Aligned_cols=82  Identities=12%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             HHHHHHHhhhhcccCchh-hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHh
Q 011338          153 QELLSCVCREISTQGESQ-FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYT  231 (488)
Q Consensus       153 ~~il~~l~~~~~~~~~~~-~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  231 (488)
                      ++.+..|+.++......+ ..+.+|+|+||+||+.|++.+.++|+=++.+. ..+|.+|+|+|.+|-+.|..+++..|++
T Consensus       637 l~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~sqec~d~llq  715 (749)
T KOG0705|consen  637 LQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGSQECIDVLLQ  715 (749)
T ss_pred             HHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcccHHHHHHHHH
Confidence            344555566554433322 24677899999999999999999999777664 5679999999999999999999999999


Q ss_pred             cCCc
Q 011338          232 MGAK  235 (488)
Q Consensus       232 ~~~~  235 (488)
                      .|.-
T Consensus       716 ~gcp  719 (749)
T KOG0705|consen  716 YGCP  719 (749)
T ss_pred             cCCC
Confidence            9753

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.74  E-value=2.1e-05  Score=85.55  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ  253 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl  253 (488)
                      ..|.|+||.|+..|..-++++|++.+.+ ++..|..|+||||.+...|+...+..+++++++    .+..|.+|.+||++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~----~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD----PNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc----ccccCccCcchhhH
Confidence            3589999999999999999999999988 667899999999999999999999999999887    58999999999999


Q ss_pred             HHHhCCCCCc
Q 011338          254 AAFLAPSSQL  263 (488)
Q Consensus       254 A~~~~~~~~v  263 (488)
                      |....+.+++
T Consensus       729 a~~~~~~d~~  738 (785)
T KOG0521|consen  729 AMEAANADIV  738 (785)
T ss_pred             HhhhccccHH
Confidence            9887665543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.63  E-value=7.8e-05  Score=75.05  Aligned_cols=60  Identities=15%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      +|..|.||||+|+..|+.+.++.|+..+++. ..+|+.|++|||-|+..|+.+++..++.+
T Consensus        51 ~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   51 RDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            6778999999999999999999999998875 46699999999999999999888777655

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.63  E-value=0.0001  Score=73.27  Aligned_cols=77  Identities=12%  Similarity=-0.037  Sum_probs=60.1

Q ss_pred             HHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          153 QELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       153 ~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      ++.-..++.-++..+-  +.-..|.||||.||+.|+.--+++|+-.++|... .|.+|.||+-+|-..||.++.+.|++.
T Consensus       146 let~LRll~lGA~~N~--~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  146 LETCLRLLSLGAQANF--FHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-QDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             HHHHHHHHHcccccCC--CCcccCCchhHHHHhccchhhhhHHhhccCCCCC-CCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            4444445554444332  2346699999999999999999999999988654 599999999999999999888777653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.54  E-value=0.0004  Score=70.46  Aligned_cols=82  Identities=15%  Similarity=0.100  Sum_probs=65.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCc--e-eeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHH
Q 011338          179 VVFIAVKHGIVEFITEIMKHYPDI--I-WCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAA  255 (488)
Q Consensus       179 pLh~Aa~~G~~~~v~~Ll~~~~~~--~-~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~  255 (488)
                      -|..|+....+..+..||.++...  . ..-+.+|+|+||+||..|+..+.++|+=.|++    +..+|.+|+|+|.||-
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d----v~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD----VMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc----ceecccCCchhhhhHh
Confidence            366677777788888888776432  1 12267889999999999999999999977876    7899999999999999


Q ss_pred             HhCCCCCcc
Q 011338          256 FLAPSSQLD  264 (488)
Q Consensus       256 ~~~~~~~v~  264 (488)
                      +.|..+.++
T Consensus       703 ~a~sqec~d  711 (749)
T KOG0705|consen  703 QAGSQECID  711 (749)
T ss_pred             hcccHHHHH
Confidence            998866554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.46  E-value=0.00012  Score=79.32  Aligned_cols=99  Identities=14%  Similarity=0.030  Sum_probs=78.3

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc--ccccCCCCc
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA--TNWDKAHNN  249 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~--~~~D~~G~T  249 (488)
                      .|.+|.-.+|+ |..|+.+..-+++......+..+|.+||||||+|+..|+..++.-|++.|++.....  +..+-.|.|
T Consensus       604 ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t  682 (975)
T KOG0520|consen  604 LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKT  682 (975)
T ss_pred             hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCc
Confidence            46667777888 777888888888888888888899999999999999999999999998876543332  345567999


Q ss_pred             HHHHHHHhCCCCCcccccchHH
Q 011338          250 ILHQAAFLAPSSQLDRVSGAAL  271 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~l~~~~l  271 (488)
                      +-.+|-..|+..+-..+...++
T Consensus       683 a~~la~s~g~~gia~~lse~~L  704 (975)
T KOG0520|consen  683 AADLARANGHKGIAGYLSEKAL  704 (975)
T ss_pred             hhhhhhcccccchHHHHhhhHH
Confidence            9999999999776655544433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.29  E-value=0.00049  Score=60.49  Aligned_cols=63  Identities=8%  Similarity=0.008  Sum_probs=58.5

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      +|..|+||+..|+..|+.+.+.+|+.++...+...|..|.+++.+|-+.|+.++++.|.+...
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            788899999999999999999999999977678889999999999999999999999998743

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.08  E-value=0.0011  Score=72.16  Aligned_cols=85  Identities=7%  Similarity=-0.045  Sum_probs=61.4

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeec-----cCCCccHHHHHHhcCChhHHHHHHhcCCccccccc----c
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCY-----DDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT----N  242 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~----~  242 (488)
                      +|..|+||||+|+.+|+..++..|+..+.+.....     +..|.|+--.|-.+|+..+..+|-+..- ....-+    .
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L-~~~~~~~~~~~  715 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKAL-SAHLSNLELAD  715 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHH-HHHHhhccccc
Confidence            78889999999999999999999997765543332     3468899999999999999888876511 011111    1


Q ss_pred             ccCCCCcHHHHHHHh
Q 011338          243 WDKAHNNILHQAAFL  257 (488)
Q Consensus       243 ~D~~G~TpLhlA~~~  257 (488)
                      ....+++|..-|.+.
T Consensus       716 ~~~s~~~~~~~~~~t  730 (975)
T KOG0520|consen  716 PNLSADSEEDKAEKT  730 (975)
T ss_pred             cccCCCchhhhhhhc
Confidence            233467777777665

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.00  E-value=0.0018  Score=62.75  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      --|..||+.|..+.|+.|++.+-+ ++.+|....+||.+|+..||.++|++|+++|+-
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            447889999999999999997655 567799999999999999999999999999874

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.82  E-value=0.00068  Score=59.63  Aligned_cols=61  Identities=10%  Similarity=0.094  Sum_probs=53.3

Q ss_pred             eeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          203 IWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       203 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      ++.+|..|||+|+.|+..|+.+++.+|+++|+.   .+-..|..|++++.+|-+.|....+..+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a---~vgv~d~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVA---FVGVTDESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcc---cccccccccchHHHHHHhcChHHHHHHH
Confidence            456799999999999999999999999999833   2789999999999999999997766443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.76  E-value=0.0014  Score=71.67  Aligned_cols=78  Identities=14%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             CCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhc
Q 011338          208 DYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIV  287 (488)
Q Consensus       208 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~  287 (488)
                      ..|.|+||.|+..+..-.+++|++.|++    +|..|..|+||||.+...|+...+..+.                   -
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~----vn~~d~~g~~plh~~~~~g~~~~~~~ll-------------------~  710 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD----VNALDSKGRTPLHHATASGHTSIACLLL-------------------K  710 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc----chhhhccCCCcchhhhhhcccchhhhhc-------------------c
Confidence            3579999999999999999999999986    8999999999999999999977553221                   1


Q ss_pred             cchhHHHhhcCCCCchhhhhH
Q 011338          288 QPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       288 ~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      +.......|.+|++|++++.+
T Consensus       711 ~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  711 RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             ccccccccCccCcchhhHHhh
Confidence            334567788999999988643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.56  E-value=0.002  Score=68.79  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=35.5

Q ss_pred             CCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338           16 PDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        16 ~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      ...|.-|+++||.|+.+.|.|+.++|++..-. .       .-+|.+|+..|
T Consensus        56 nc~d~lGr~al~iai~nenle~~eLLl~~~~~-~-------gdALL~aI~~~   99 (822)
T KOG3609|consen   56 NCRDPLGRLALHIAIDNENLELQELLLDTSSE-E-------GDALLLAIAVG   99 (822)
T ss_pred             hccChHhhhceecccccccHHHHHHHhcCccc-c-------chHHHHHHHHH
Confidence            45788999999999999999999999987322 1       34677777776

>smart00248 ANK ankyrin repeats

Probab=96.04  E-value=0.0091  Score=34.81  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=16.7

Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCC
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYP  200 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~  200 (488)
                      |.||+|+|+..|+.++++.|++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5567777777777777777666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.61  E-value=0.01  Score=34.57  Aligned_cols=26  Identities=15%  Similarity=0.134  Sum_probs=23.6

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCc
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYR   46 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~   46 (488)
                      +|.||||+|+..|+.++++.|++.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47899999999999999999998855

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.57  E-value=0.013  Score=57.03  Aligned_cols=43  Identities=12%  Similarity=-0.099  Sum_probs=39.4

Q ss_pred             hHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338           24 MLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        24 T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      --|-.||+.|..|.|++|++. +..+|.+|+...+||.+|+-.|
T Consensus        38 ~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcG   80 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCG   80 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcC
Confidence            348899999999999999995 6779999999999999999999

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.58  E-value=0.021  Score=57.52  Aligned_cols=48  Identities=15%  Similarity=0.046  Sum_probs=42.2

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQK   66 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~   66 (488)
                      .+.---|+||+|+..|.-++|.++|+++ .++..+|..|+||..+++..
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccccH
Confidence            3445689999999999999999999996 77899999999999998844

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.52  E-value=0.082  Score=53.42  Aligned_cols=63  Identities=16%  Similarity=0.111  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhCCCce-----eeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHH
Q 011338          189 VEFITEIMKHYPDII-----WCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAA  255 (488)
Q Consensus       189 ~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~  255 (488)
                      .+.+++|.++..+..     +..|.--.|+||+|+.+|..++|.++++.+.+    ...+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D----p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD----PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC----chhcccCCCCcccccc
Confidence            455566655543321     12234456888888888888888888888765    4778888888888776

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=85.65  E-value=18  Score=33.26  Aligned_cols=11  Identities=45%  Similarity=0.498  Sum_probs=8.8

Q ss_pred             cCCCCchhhhh
Q 011338          297 LHYKTPRALFS  307 (488)
Q Consensus       297 ~~G~tp~~l~~  307 (488)
                      ++|+|+.+++.
T Consensus        43 k~G~tA~~lfG   53 (206)
T PF06570_consen   43 KKGKTARQLFG   53 (206)
T ss_pred             hCCCcHHHHcC
Confidence            57888888876

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=83.44  E-value=0.8  Score=40.95  Aligned_cols=52  Identities=17%  Similarity=0.103  Sum_probs=43.6

Q ss_pred             ccCCCccHHHHHHhcCChhHHH-HHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          206 YDDYNRHIFSYATLQRQEKIFN-LIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       206 ~d~~g~t~Lh~A~~~~~~~iv~-~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      .|.+-.+|||-|+.-++.+++- ++++..+..+..+|..|.+|..+|.+|...
T Consensus       218 Id~kTe~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~  270 (280)
T KOG4591|consen  218 IDGKTENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCR  270 (280)
T ss_pred             HcCCCcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHH
Confidence            3667789999999999999875 566777777788999999999999998654

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=80.37  E-value=3.6  Score=31.11  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      .-+..|...|+.|+++.+++.+..     +   ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            558999999999999999976411     2   5679999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.91
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.91
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.89
2pnn_A	273	Transient receptor potential cation channel subfa	99.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
2etb_A	256	Transient receptor potential cation channel subfam	99.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.87
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.86
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.85
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.85
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.84
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.81
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.81
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.81
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.76
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.73
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.7
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.7
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.69
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.69
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.67
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.64
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.58
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.53

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=1.3e-32  Score=265.53  Aligned_cols=246  Identities=13%  Similarity=-0.026  Sum_probs=170.4

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCcc--ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccc
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK--LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYA   94 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~   94 (488)
                      .+|.+|+||||+||..|+.+++++|++.++.  .++.+|..|+||||+||..|       +.++++.|+.....+     
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~-----   71 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-------EASTVEKLYAAGAGV-----   71 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS-----
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCC-----
Confidence            4789999999999999999999999988543  47889999999999999999       467788777654322     


Q ss_pred             cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHH--------HH------HhhH-----hHHHH
Q 011338           95 SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYE--------VK------LAHV-----QTQEL  155 (488)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------~~------~~h~-----~~~~i  155 (488)
                                 ...+..|.||||.|+..++.++++.+++.+.........        ..      ..+.     .....
T Consensus        72 -----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (282)
T 1oy3_D           72 -----------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE  140 (282)
T ss_dssp             -----------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------
T ss_pred             -----------CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhh
Confidence                       123557899999999999999999999876431100000        00      0000     00011


Q ss_pred             HHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          156 LSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       156 l~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      ...+.......+   .++..|.||||+|+..|+.+++++|++.+++.....+..|+||||+|+.+|+.+++++|++.|++
T Consensus       141 ~~~~~~~~~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad  217 (282)
T 1oy3_D          141 EPRDEDWRLQLE---AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (282)
T ss_dssp             ---CCCGGGGTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hhhhhhhhhcCC---CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            111111111122   25778999999999999999999999999887655335699999999999999999999999887


Q ss_pred             cccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338          236 KNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK  311 (488)
Q Consensus       236 ~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~  311 (488)
                          ++.+|.+|+||||+|+..|+.++++.|.                +   .....+.+|++|.||++.+.....
T Consensus       218 ----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll----------------~---~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          218 ----PTARMYGGRTPLGSALLRPNPILARLLR----------------A---HGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             ----TTCCCTTSCCHHHHHHTSSCHHHHHHHH----------------H---TTCCCCCCC---------------
T ss_pred             ----CcccccCCCCHHHHHHHcCCcHHHHHHH----------------H---cCCCcCcCCCcccccccccCCccc
Confidence                7999999999999999999876653321                0   223456889999999999866543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2e-31  Score=254.15  Aligned_cols=218  Identities=10%  Similarity=-0.028  Sum_probs=146.7

Q ss_pred             CCCCCchhHHHHHHHcC-------------CccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHh
Q 011338           17 DKGTNGAMLLTSCIIDD-------------IFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWI   83 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g-------------~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li   83 (488)
                      .+|.+|+||||+|+..|             +.+++++|++.+++..+..|.+|+||||+||..|       ..+.++.++
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll   77 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS-------RSDAAKRLL   77 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTT-------CHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcC-------CHHHHHHHH
Confidence            37889999999999987             8999999999988776777999999999999999       466777777


Q ss_pred             hhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHH--hh----HhHHHHHH
Q 011338           84 YSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKL--AH----VQTQELLS  157 (488)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~h----~~~~~il~  157 (488)
                      ....++                ...+..|.||||.|+..++.++++.+++.+...+...+..+.  .|    .+..++++
T Consensus        78 ~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  141 (253)
T 1yyh_A           78 EASADA----------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE  141 (253)
T ss_dssp             HTTCCT----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHH
T ss_pred             HcCCCC----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHH
Confidence            543322                123557889999999999999999999877533322211111  12    23346777


Q ss_pred             HHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccc
Q 011338          158 CVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKN  237 (488)
Q Consensus       158 ~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  237 (488)
                      .|++.+.+.+.   +|..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++  
T Consensus       142 ~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--  215 (253)
T 1yyh_A          142 DLINSHADVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN--  215 (253)
T ss_dssp             HHHHTTCCTTC---BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--
T ss_pred             HHHHcCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--
Confidence            88887766554   6788999999999999999999999998875 45699999999999999999999999999987  


Q ss_pred             cccccccCCCCcHHHHHHHhCCCCCccc
Q 011338          238 SVATNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       238 ~~~~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                        ++.+|..|+||||+|++.|+.++++.
T Consensus       216 --~~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          216 --RDITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             --ccccccCCCCHHHHHHHcCCHHHHHH
Confidence              78999999999999999999877643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.5e-30  Score=245.32  Aligned_cols=220  Identities=11%  Similarity=0.019  Sum_probs=174.0

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHH---hCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQ---RYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~---~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      .+|.+|+||||+||..|+.+++++|++   ..+..++.+|.+|.||||+|+..|       ..++++.++.....+    
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~----   72 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-------LPSVVRLLVTAGASP----   72 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTTCCT----
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-------CHHHHHHHHHcCCCc----
Confidence            478999999999999999999999998   356678899999999999999999       466777777543322    


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK  173 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~  173 (488)
                                  ...+..|.||+|.|+..++.++++.+++.+....                        ...+   .++
T Consensus        73 ------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~------------------------~~~~---~~~  113 (241)
T 1k1a_A           73 ------------MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT------------------------LDLE---ARN  113 (241)
T ss_dssp             ------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS------------------------CCTT---CCC
T ss_pred             ------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------------------------cccc---ccC
Confidence                        1235578899999999888888887776553110                        0111   256


Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ  253 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl  253 (488)
                      ..|.||||+|+..|+.+++++|++.+++.....+..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+
T Consensus       114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~  189 (241)
T 1k1a_A          114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHS  189 (241)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHH
Confidence            77999999999999999999999999886544237899999999999999999999999876    79999999999999


Q ss_pred             HHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          254 AAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       254 A~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      |+..|+.++++.+.                +   ...+.+.+|++|+||++++.+.
T Consensus       190 A~~~~~~~~v~~Ll----------------~---~ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          190 ASGRGLLPLVRTLV----------------R---SGADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             HHHHTCHHHHHHHH----------------H---TTCCTTCCCTTSCCTTTTCSSH
T ss_pred             HHHcCCHHHHHHHH----------------h---cCCCCCCcCCCCCCHHHHHHhc
Confidence            99999866553221                1   2234567899999999998654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=4e-30  Score=255.67  Aligned_cols=249  Identities=10%  Similarity=-0.016  Sum_probs=187.6

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|       +.++++.++.....+       
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g-------~~~iv~~Ll~~g~~~-------  117 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYG-------HYEVTELLLKHGACV-------  117 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT-------
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHCC-------CHHHHHHHHHCCCCC-------
Confidence            37889999999999999999999999985 457899999999999999999       467788777654322       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhh-hhHHH-------------------HH--Hh----hH
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI-KHIYE-------------------VK--LA----HV  150 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~-------------------~~--~~----h~  150 (488)
                               ...+..|.||+|.|+..++.++++.+++.+.... .....                   ..  ..    ..
T Consensus       118 ---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  188 (351)
T 3utm_A          118 ---------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE  188 (351)
T ss_dssp             ---------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHh
Confidence                     1234578899999999999999999998764210 00000                   00  00    01


Q ss_pred             hHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHc---CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHH
Q 011338          151 QTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKH---GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFN  227 (488)
Q Consensus       151 ~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  227 (488)
                      ...+.+..++.....   ....+..|.||||+|+..   +..+++++|++.+.+. +.+|.+|+||||+|+.+|+.++++
T Consensus       189 ~~~~~~~~~l~~~~~---~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~  264 (351)
T 3utm_A          189 ADLAKVKKTLALEII---NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVME  264 (351)
T ss_dssp             TCHHHHHHHTTTCCT---TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHhhcc---cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHH
Confidence            112233333332111   111466799999999999   6689999999998875 456999999999999999999999


Q ss_pred             HHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhh
Q 011338          228 LIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFS  307 (488)
Q Consensus       228 ~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~  307 (488)
                      +|++.|++    +|.+|..|+||||+|+..|+.++++.|.                +   ...+.+.+|++|+||++++.
T Consensus       265 ~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~~~v~~Ll----------------~---~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          265 VLHKHGAK----MNALDSLGQTALHRAALAGHLQTCRLLL----------------S---YGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHH----------------H---TTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHH----------------H---cCCCCCCcCCCCCChhhhhh
Confidence            99999876    7999999999999999999876653321                0   22346788999999999987


Q ss_pred             HHHHHHHHh
Q 011338          308 DQHKKLVEQ  316 (488)
Q Consensus       308 ~~~~~l~~~  316 (488)
                      +...++..+
T Consensus       322 ~~~~~~l~~  330 (351)
T 3utm_A          322 EAVQQILSE  330 (351)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            766665544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=2.7e-30  Score=243.20  Aligned_cols=216  Identities=14%  Similarity=0.001  Sum_probs=173.4

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|.||||+|+..|+.+++++|++.+. .++..|.+|.||||+|+..|       ..+.++.++.....+       
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~-------   70 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENN-------HLEAVKYLIKAGALV-------   70 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTT-------CHHHHHHHHTTTCCC-------
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHHHhC-------CHHHHHHHHhCCCCC-------
Confidence            478899999999999999999999999854 57889999999999999999       466777776433211       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                               ...+..+.||+|.|+..++.++++.+++.+...                           .+   .++..|
T Consensus        71 ---------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---------------------------~~---~~~~~g  111 (237)
T 3b7b_A           71 ---------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD---------------------------VN---CQDDGG  111 (237)
T ss_dssp             ---------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC---------------------------TT---CCCTTS
T ss_pred             ---------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---------------------------cc---cCCCCC
Confidence                     123457889999999988888887777655211                           11   146679


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|.+    ++.+|.+|+||||+|+.
T Consensus       112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~  186 (237)
T 3b7b_A          112 WTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD----LHAVNIHGDSPLHIAAR  186 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHH
Confidence            99999999999999999999998875 45689999999999999999999999999876    78999999999999999


Q ss_pred             hCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHH
Q 011338          257 LAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQH  310 (488)
Q Consensus       257 ~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~  310 (488)
                      .|+.++++.+.                +   ...+.+.+|++|+||++++....
T Consensus       187 ~~~~~~v~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          187 ENRYDCVVLFL----------------S---RDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             TTCHHHHHHHH----------------T---TTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             hCCHhHHHHHH----------------H---cCCCCCccCCCCCCHHHHHHHHH
Confidence            99866543221                0   22445678999999999986543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-30  Score=267.88  Aligned_cols=284  Identities=11%  Similarity=0.035  Sum_probs=175.5

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.+.+.+.   +|.+|+||||+|+..|+.+++++|++.+. .++..|..|.||||+|+..|+       .+.++
T Consensus        62 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~-------~~~v~  130 (437)
T 1n11_A           62 VAKYLLQNKAKVNA---KAKDDQTPLHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAAREGH-------VETVL  130 (437)
T ss_dssp             HHHHHHHHTCCSSC---CCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHHTC-------HHHHH
T ss_pred             HHHHHHhCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCC-------HHHHH
Confidence            46788888776554   68889999999999999999999998854 467888889999999998883       44555


Q ss_pred             HHhhhhhhhh----------------------hccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh
Q 011338           81 KWIYSFIYIR----------------------SAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA  138 (488)
Q Consensus        81 ~li~~~~~v~----------------------~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  138 (488)
                      .++.......                      +..++..     ......+..|.||+|.|+..++.++++.+++.+...
T Consensus       131 ~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  205 (437)
T 1n11_A          131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-----AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP  205 (437)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS
T ss_pred             HHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            5544322110                      0000100     011123446677777777777777777777765321


Q ss_pred             -hhhHHHHHHhh----HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccH
Q 011338          139 -IKHIYEVKLAH----VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHI  213 (488)
Q Consensus       139 -~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~  213 (488)
                       ..........|    .+..++++.|++.+...+.   ++..|.||||+|+..|+.+++++|++.+++. +..|..|+||
T Consensus       206 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~  281 (437)
T 1n11_A          206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA---ESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTP  281 (437)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence             00000000111    2234666666666554433   4566778888888888888888887776664 3447777778


Q ss_pred             HHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccc-------------hHHhhHHHHhHH
Q 011338          214 FSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSG-------------AALQMQRELQWF  280 (488)
Q Consensus       214 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~-------------~~l~~~~~l~~~  280 (488)
                      ||+|+..|+.+++++|++.|.+    ++.+|..|+||||+|+..|+.++++.|..             .++.....-...
T Consensus       282 L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~  357 (437)
T 1n11_A          282 LHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT  357 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH
Confidence            8888777777777777777665    67777778888888887777776654411             112211111112


Q ss_pred             HHHHhhcc-chhHHHhhcCCCCchhhhhH
Q 011338          281 KEVESIVQ-PKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       281 ~~v~~~~~-~~~~~~~n~~G~tp~~l~~~  308 (488)
                      +.++.++. ..+.+.+|++|+||++++.+
T Consensus       358 ~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~  386 (437)
T 1n11_A          358 DIVTLLLKNGASPNEVSSDGTTPLAIAKR  386 (437)
T ss_dssp             HHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            23333322 23455667778888877654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=2.9e-30  Score=241.37  Aligned_cols=215  Identities=12%  Similarity=0.049  Sum_probs=170.9

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      |+||||.|+..|+.+++++|++.++...+.+|.+|+||||+|+..|       ..++++.++.......           
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~-----------   63 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ-------AHEITSFLLSKMENVN-----------   63 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTCTTCC-----------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcC-------CHHHHHHHHhcccccc-----------
Confidence            7899999999999999999999998888889999999999999999       4667777775532110           


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                       . ....+..|.||+|.|+..++.++++.+++.+..                          ...+   .++..|.||||
T Consensus        64 -~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~---~~~~~g~t~L~  112 (228)
T 2dzn_A           64 -L-DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK--------------------------PDLN---KITNQGVTCLH  112 (228)
T ss_dssp             -G-GGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSC--------------------------CCTT---CCCTTCCCHHH
T ss_pred             -c-cccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--------------------------cccc---cCCcCCCCHHH
Confidence             0 001345788999999988888777777665410                          1111   15677999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC-CccccccccccCCCCcHHHHHHHhCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG-AKKNSVATNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~~~~~~~~D~~G~TpLhlA~~~~~~  260 (488)
                      +|+..|+.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+ .+    ++.+|.+|+||||+|+..|+.
T Consensus       113 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~  187 (228)
T 2dzn_A          113 LAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHG  187 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999998775 466999999999999999999999999998 54    799999999999999999986


Q ss_pred             CCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          261 SQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       261 ~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      ++++.+..               +   .+.+.+.+|++|+||++++.+
T Consensus       188 ~~v~~Ll~---------------~---~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          188 DAAVLLVE---------------K---YGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHHHHH---------------H---HCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHHHHH---------------h---cCCCCCccCCCCCcHHHHHHH
Confidence            65532210               0   134466789999999999865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=5e-30  Score=249.14  Aligned_cols=211  Identities=12%  Similarity=0.011  Sum_probs=170.5

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+||..|       ..++++.++.....+       
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~-------  118 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGG-------HLSCVKILLKHGAQV-------  118 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTT-CCSCEECTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCS-------
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHCC-------cHHHHHHHHHCCCCC-------
Confidence            47899999999999999999999999985 457899999999999999999       466777777543221       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                               ...+..|.||+|.|+..++.++++.+++.+                            ...+    .+.+|
T Consensus       119 ---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------------------~~~~----~~~~g  157 (285)
T 3d9h_A          119 ---------NGVTADWHTPLFNACVSGSWDCVNLLLQHG----------------------------ASVQ----PESDL  157 (285)
T ss_dssp             ---------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCSS----CSCTT
T ss_pred             ---------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCC----------------------------CCCC----CCCCC
Confidence                     124567889999999888887777766554                            2222    23348


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++    ++ +|.+|+||||+|+.
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~-~~~~g~t~L~~A~~  231 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD----VN-QGKGQDSPLHAVVR  231 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC----TT-CCBTTBCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC----CC-CCCCCCCHHHHHHH
Confidence            99999999999999999999998875 45699999999999999999999999999876    45 48999999999999


Q ss_pred             hCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          257 LAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       257 ~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      .|+.++++.|.                +   ...+.+.+|++|+||++++.+
T Consensus       232 ~~~~~~v~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          232 TASEELACLLM----------------D---FGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             TTCHHHHHHHH----------------H---TTCCTTCCCTTSCCGGGGSCT
T ss_pred             cCCHHHHHHHH----------------H---CCCCCCCcCCCCCCHHHHhcC
Confidence            99866553221                0   234567889999999999874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5.3e-30  Score=263.74  Aligned_cols=226  Identities=13%  Similarity=0.020  Sum_probs=141.4

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |++|++++.+.+.   +|..|.||||+|+..|+.+++++|++.+. .++.+|.+|+||||+||..|       +.++++.
T Consensus        30 v~~Ll~~g~~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g-------~~~~v~~   98 (437)
T 1n11_A           30 VKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARIG-------HTNMVKL   98 (437)
T ss_dssp             HHHHHHTTCCSCC---SSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHHHHHT-------CHHHHHH
T ss_pred             HHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCC-------CHHHHHH
Confidence            5667766655443   56667777777777777777777777643 45667777777777777777       3555666


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhh--------hhHHHHHHhhHhHH
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI--------KHIYEVKLAHVQTQ  153 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~--------~~~~~~~~~h~~~~  153 (488)
                      |+....++                ...+..|.||+|.|+..++.++++.+++.+....        ....+..   .+..
T Consensus        99 Ll~~ga~~----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~---~g~~  159 (437)
T 1n11_A           99 LLENNANP----------------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK---YGKV  159 (437)
T ss_dssp             HHHHTCCT----------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH---TTCH
T ss_pred             HHhCCCCC----------------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH---cCCH
Confidence            65443211                1133456677777777777777777776553210        0111111   2234


Q ss_pred             HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      ++++.|++.+...+.   .+..|.||||+|+..|+.+++++|++.+.+.. ..+.+|+||||+|+..|+.+++++|++.+
T Consensus       160 ~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  235 (437)
T 1n11_A          160 RVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYG  235 (437)
T ss_dssp             HHHHHHHHTTCCTTC---CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            566666665544433   45567777777777777777777777766543 34667777777777777777777777776


Q ss_pred             CccccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338          234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                      .+    ++.+|.+|+||||+|+..|+.++++.
T Consensus       236 ~~----~~~~~~~g~t~L~~A~~~g~~~~v~~  263 (437)
T 1n11_A          236 GS----ANAESVQGVTPLHLAAQEGHAEMVAL  263 (437)
T ss_dssp             CC----TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CC----CCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            54    56677777777777777777665543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=6.2e-30  Score=254.14  Aligned_cols=239  Identities=12%  Similarity=0.017  Sum_probs=174.9

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCcc--------------------------------c
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK--------------------------------L   48 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~--------------------------------~   48 (488)
                      +|++|++++++.+.  ..+..|+||||+||..|+.++|++||+.+.+                                .
T Consensus        40 ~V~~LL~~Gadvn~--~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (337)
T 4g8k_A           40 LVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD  117 (337)
T ss_dssp             HHHHHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHCCCCCCc--cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccch
Confidence            47899998876654  2345699999999999999999999987532                                3


Q ss_pred             cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHH
Q 011338           49 AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMV  128 (488)
Q Consensus        49 ~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  128 (488)
                      ++.+|..|.||||+|+..|       ....++.++.....+....      ............|.||||.|+..++.+++
T Consensus       118 ~~~~d~~g~t~l~~A~~~~-------~~~~~~~ll~~ga~~~~~~------~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          118 VNECDFYGFTAFMEAAVYG-------KVKALKFLYKRGANVNLRR------KTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             TTCBCTTCCBHHHHHHHTT-------CHHHHHHHHHTTCCTTCCC------CCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             hhhhccCCCCHHHHHHHcC-------cHHHHHHHHHcCCCcchhh------ccccccccccCCCCcHHHHHHHCCCHHHH
Confidence            4566788889999999888       4556666665544332100      00011122355789999999999999999


Q ss_pred             HHHhhccchhhhhHH---------HHHHhh-HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHh
Q 011338          129 WKSLNLFVPAIKHIY---------EVKLAH-VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKH  198 (488)
Q Consensus       129 ~~ll~~~~~~~~~~~---------~~~~~h-~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~  198 (488)
                      +.|++.....++..+         .....+ .....+++.|++.+.+++.   +|.+|+||||+|++.|+.++++.|++.
T Consensus       185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~---~d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC---CCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC---cCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            999965322222111         111111 2234577778888776654   678899999999999999999999987


Q ss_pred             CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          199 YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       199 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      ....++.+|.+|+||||+|+++|+.++|++|+++|++    +|     +.||||+|++.|+.++|+.|
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n-----~~~~L~~A~~~~~~~iv~~L  320 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TD-----CGDLVMTARRNYDHSLVKVL  320 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS----ST-----TCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CC-----CCCHHHHHHHcCCHHHHHHH
Confidence            5555667799999999999999999999999999876    33     45699999999998776544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1.2e-29  Score=237.69  Aligned_cols=215  Identities=13%  Similarity=0.039  Sum_probs=175.1

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI   98 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~   98 (488)
                      +..++||||.|+..|+.+.++.|++.++...+.+|.+|.||||+|+..|       +.+.++.++.....+         
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~---------   66 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-------HTEIVEFLLQLGVPV---------   66 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS---------
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-------cHHHHHHHHHhCCCC---------
Confidence            4568899999999999999999999999888999999999999999999       467777777543221         


Q ss_pred             CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcch
Q 011338           99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKK  178 (488)
Q Consensus        99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~t  178 (488)
                             ...+..|.||+|.|+..++.++++.+++.+                            ...+.   +|..|.|
T Consensus        67 -------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------------------~~~~~---~~~~g~t  108 (231)
T 3aji_A           67 -------NDKDDAGWSPLHIAASAGXDEIVKALLVKG----------------------------AHVNA---VNQNGCT  108 (231)
T ss_dssp             -------CCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCTTC---CCTTSCC
T ss_pred             -------CCcCCCCCCHHHHHHHcCHHHHHHHHHHcC----------------------------CCCCC---CCCCCCC
Confidence                   124557899999999888777777766554                            22222   5677999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhC
Q 011338          179 VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLA  258 (488)
Q Consensus       179 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~  258 (488)
                      |||+|+..|+.+++++|++.+.+. ...|..|+||||+|+..|+.+++++|++.+.+    ++.+|.+|+||||+|+..|
T Consensus       109 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~  183 (231)
T 3aji_A          109 PLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEE  183 (231)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCC
Confidence            999999999999999999998775 45689999999999999999999999999876    7899999999999999999


Q ss_pred             CCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338          259 PSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK  311 (488)
Q Consensus       259 ~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~  311 (488)
                      +.++++.+.                +   ...+.+.+|++|+||++++.+...
T Consensus       184 ~~~~v~~Ll----------------~---~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          184 RVEEAKFLV----------------T---QGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             CHHHHHHHH----------------H---TTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             CHHHHHHHH----------------H---CCCCCCCCCCCCCCHHHHHHhhHH
Confidence            866553221                1   123456788999999999876543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=3e-29  Score=233.77  Aligned_cols=204  Identities=11%  Similarity=-0.030  Sum_probs=167.3

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++++.+...  ..|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|       ..++++
T Consensus         6 ~i~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~   75 (223)
T 2f8y_A            6 VISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSAD-------AQGVFQ   75 (223)
T ss_dssp             CEETTEETTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred             HHHHHHHcCCCccc--ccCCCCCchHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC-------CHHHHH
Confidence            57899998875443  36889999999999999999999999985 457889999999999999999       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .++....           ..    ....+..+.||+|.|+..++.++++.+++.+                         
T Consensus        76 ~Ll~~~~-----------~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-------------------------  115 (223)
T 2f8y_A           76 ILIRNRA-----------TD----LDARMHDGTTPLILAARLAVEGMLEDLINSH-------------------------  115 (223)
T ss_dssp             HHHHBTT-----------SC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-------------------------
T ss_pred             HHHHcCC-----------CC----cccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-------------------------
Confidence            7765321           01    1123557889999999888777777666544                         


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~  240 (488)
                         ...+.   +|..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    +
T Consensus       116 ---~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~  184 (223)
T 2f8y_A          116 ---ADVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN----R  184 (223)
T ss_dssp             ---CCTTC---BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----T
T ss_pred             ---CCCcC---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----C
Confidence               22222   5677999999999999999999999998775 45699999999999999999999999999886    6


Q ss_pred             ccccCCCCcHHHHHHHhCCCCCccc
Q 011338          241 TNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                      +.+|.+|+||||+|+..++.++++.
T Consensus       185 ~~~~~~g~t~l~~A~~~~~~~i~~~  209 (223)
T 2f8y_A          185 DITDHMDRLPRDIAQERMHHDIVRL  209 (223)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccCCCHHHHHHHhcchHHHHH
Confidence            8999999999999999998766543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.3e-29  Score=254.58  Aligned_cols=217  Identities=12%  Similarity=-0.025  Sum_probs=176.6

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      ..|.+|.||||+||..|+.+++++|++.+ ..++.+|.+|.||||+||..|       +.++++.|+.....+       
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~-------   79 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFG-------CVDTAKYLASVGEVH-------   79 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHC-------CHHHHHHHHHHCCCC-------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCc-------
Confidence            46889999999999999999999999985 457899999999999999999       467788777654311       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccch---hhhh-----------------H--HHHHHhh----H
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVP---AIKH-----------------I--YEVKLAH----V  150 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~---~~~~-----------------~--~~~~~~h----~  150 (488)
                                 ....|.||||.|+..++.++++.|++.+..   ..+.                 .  ......|    .
T Consensus        80 -----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  148 (364)
T 3ljn_A           80 -----------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL  148 (364)
T ss_dssp             -----------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred             -----------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence                       234689999999999999999999987311   0100                 0  0011112    2


Q ss_pred             h--HHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCc----eeeccCCCccHHHHHHhcCChh
Q 011338          151 Q--TQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDI----IWCYDDYNRHIFSYATLQRQEK  224 (488)
Q Consensus       151 ~--~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~  224 (488)
                      +  ..++++.|++.+.+.+.   +|..|.||||+|+..|+.+++++|++.+++.    .+..|..|+||||+|+.+|+.+
T Consensus       149 g~~~~~~v~~Ll~~ga~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  225 (364)
T 3ljn_A          149 GPEYLEMIKILVQLGASPTA---KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED  225 (364)
T ss_dssp             CGGGHHHHHHHHHHTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH
T ss_pred             CCchHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHH
Confidence            3  57888888888776654   6788999999999999999999999998872    4456899999999999999999


Q ss_pred             HHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          225 IFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       225 iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      ++++|++.|++    ++.+|.+|+||||+|+..|+.++++.|
T Consensus       226 ~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~g~~~~v~~L  263 (364)
T 3ljn_A          226 VAMRFVEMGID----VNMEDNEHTVPLYLSVRAAMVLLTKEL  263 (364)
T ss_dssp             HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHcCCC----CCCCCCCCCCHHHHHHHhChHHHHHHH
Confidence            99999999887    799999999999999999998877554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=1.6e-29  Score=255.18  Aligned_cols=222  Identities=10%  Similarity=-0.011  Sum_probs=177.2

Q ss_pred             CC-CCchhHHHHHHHcCCccHHHHHHH-------hCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338           18 KG-TNGAMLLTSCIIDDIFDIPLDLLQ-------RYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        18 ~d-~~G~T~LH~A~~~g~~div~~LL~-------~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      +| .+|+||||+|+..|+.+++++|+.       ..+.+++.+|.+|.||||+|+..|       +.++++.|+....++
T Consensus       120 ~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g-------~~~iv~~Ll~~ga~~  192 (373)
T 2fo1_E          120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-------RRRLVAYLMKAGADP  192 (373)
T ss_dssp             CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS
T ss_pred             cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcC-------hHHHHHHHHHCCCCC
Confidence            44 789999999999999999998874       346678999999999999999999       467777777553322


Q ss_pred             hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccc--hhhhhH---------HHHHHhhHhHHHHHHH
Q 011338           90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFV--PAIKHI---------YEVKLAHVQTQELLSC  158 (488)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~--~~~~~~---------~~~~~~h~~~~~il~~  158 (488)
                                      ...+..|.||||.|+..++.++++.+++.+.  ..++..         .+....+....++++.
T Consensus       193 ----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~  256 (373)
T 2fo1_E          193 ----------------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL  256 (373)
T ss_dssp             ----------------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred             ----------------cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHH
Confidence                            1245578899999999999999999998762  111111         1121111226788888


Q ss_pred             HhhhhcccCchh-----hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          159 VCREISTQGESQ-----FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       159 l~~~~~~~~~~~-----~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      |++.+.+.+...     .+|..|.||||+|+..|+.+++++|++.++...+.+|.+|+||||+|+.+|+.+++++|++.|
T Consensus       257 Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  336 (373)
T 2fo1_E          257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG  336 (373)
T ss_dssp             HHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            888877665321     246689999999999999999999999885556677999999999999999999999999998


Q ss_pred             CccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      ++    ++.+|.+|+||||+|+..|+.++++.|
T Consensus       337 ad----~~~~d~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          337 AS----VEAVDATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             CC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CC----ccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            87    799999999999999999997766443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=7.5e-30  Score=245.80  Aligned_cols=215  Identities=13%  Similarity=0.045  Sum_probs=123.3

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccc-------cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhh
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKL-------AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~-------~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      ++|..+.+|||.||..|+.++|++||+.+...       ++..|..|.||||.|+..++..      ..++.++....++
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~------~~v~~Ll~~Gadv   79 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQ------KRLAKVPASGLGV   79 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHH------HHHHHHHHCCCCC
Confidence            37888999999999999999999999886542       4567888999999999877321      1233333222211


Q ss_pred             hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCch
Q 011338           90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES  169 (488)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~  169 (488)
                                      ...+..|.||||.|+..++.++++.|++.+.                            +.+. 
T Consensus        80 ----------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a----------------------------~~~~-  114 (269)
T 4b93_B           80 ----------------NVTSQDGSSPLHVAALHGRADLIPLLLKHGA----------------------------NAGA-  114 (269)
T ss_dssp             ----------------TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTC----------------------------CTTC-
T ss_pred             ----------------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC----------------------------CcCc-
Confidence                            1245678999999999988888887776552                            1111 


Q ss_pred             hhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338          170 QFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN  249 (488)
Q Consensus       170 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  249 (488)
                        ++.+|.||+|+|+..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    +|.+|.+|+|
T Consensus       115 --~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t  187 (269)
T 4b93_B          115 --RNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNT  187 (269)
T ss_dssp             --CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCB
T ss_pred             --cCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCc
Confidence              3455677777777777777777777766654 34466777777777777777777777776655    5667777777


Q ss_pred             HHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          250 ILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      |||+|+..|+.++++.|.                +   ...+++.+|++|+||++++.+
T Consensus       188 ~Lh~A~~~g~~~~v~~Ll----------------~---~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          188 ALHEAVIEKHVFVVELLL----------------L---HGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             HHHHHHHTTCHHHHHHHH----------------H---TTCCSCCCCTTSCCSGGGSCT
T ss_pred             HHHHHHHcCCHHHHHHHH----------------H---CCCCCCCcCCCCCCHHHHHHh
Confidence            777777776655443220                0   122345666677777776643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5.6e-29  Score=239.80  Aligned_cols=243  Identities=14%  Similarity=0.067  Sum_probs=159.9

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccc-cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQ-DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS   99 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~   99 (488)
                      +|+||||.|+..|+.+++++|++.+++ ++.+ +..|+||||+|+..|       +.++++.++.....+          
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~----------   65 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMS-------REDIVELLLRHGADP----------   65 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT----------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCC----------
Confidence            466677777777777777777766544 3333 566667777777666       345555555432211          


Q ss_pred             CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHHHHHHhhhhcccCchh----
Q 011338          100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQELLSCVCREISTQGESQ----  170 (488)
Q Consensus       100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~----  170 (488)
                            ...+..|.||+|.|+..++.++++.+++.+... ..........|    .+..++++.+++.+...+...    
T Consensus        66 ------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  139 (285)
T 1wdy_A           66 ------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             ------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             ------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence                  112345666777777666677776666654211 00000000011    123455666666554443211    


Q ss_pred             ---hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC----hhHHHHHHhcCCccccccccc
Q 011338          171 ---FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ----EKIFNLIYTMGAKKNSVATNW  243 (488)
Q Consensus       171 ---~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~~~~~  243 (488)
                         ..+..|.||||+|+..|+.+++++|++..+...+..|..|+||||+|+..++    .+++++|++.|.+    ++.+
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~----~~~~  215 (285)
T 1wdy_A          140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVR  215 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCC
T ss_pred             HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC----CCCc
Confidence               1267799999999999999999999998444456679999999999999999    8999999999876    7899


Q ss_pred             cCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          244 DKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       244 D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      |.+|+||||+|+..|+.++++.+.                +  ..+.+.+.+|.+|+||++++.+.
T Consensus       216 ~~~g~t~L~~A~~~~~~~~v~~Ll----------------~--~~g~~~~~~~~~g~t~l~~A~~~  263 (285)
T 1wdy_A          216 GERGKTPLILAVEKKHLGLVQRLL----------------E--QEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH----------------H--SSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHH----------------h--ccCCCccccCCCCCcHHHHHHHc
Confidence            999999999999999865543221                0  02344677889999999998663

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=8.4e-29  Score=238.55  Aligned_cols=231  Identities=11%  Similarity=0.008  Sum_probs=182.3

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++++.+.  ..+..|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|       ..++++
T Consensus        20 ~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~   89 (285)
T 1wdy_A           20 LVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGATPFLLAAIAG-------SVKLLK   89 (285)
T ss_dssp             HHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHT-------CHHHHH
T ss_pred             HHHHHHHcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcC-------CHHHHH
Confidence            36788888875543  34788999999999999999999999985 457889999999999999999       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhh---------HHH--HHHhh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKH---------IYE--VKLAH  149 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~---------~~~--~~~~h  149 (488)
                      .++.....+                ...+..|.||+|.|+..++.++++.+++.+...-..         ...  ....|
T Consensus        90 ~Ll~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           90 LFLSKGADV----------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             HHHHTTCCT----------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             HHHHcCCCC----------------CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence            777543322                123557889999999999999999999876421100         000  01112


Q ss_pred             ----HhHHHHHHHHhhh-hcccCchhhhhcCcchHHHHHHHcCc----HHHHHHHHHhCCCceeeccCCCccHHHHHHhc
Q 011338          150 ----VQTQELLSCVCRE-ISTQGESQFEKVGIKKVVFIAVKHGI----VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQ  220 (488)
Q Consensus       150 ----~~~~~il~~l~~~-~~~~~~~~~~~~~g~tpLh~Aa~~G~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  220 (488)
                          .+..++++.+++. +...+.   +|..|.||||+|+..|+    .+++++|++.+.+. +.+|..|+||||+|+.+
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVNA---CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTC---CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCCc---cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence                3346788888875 544443   67789999999999999    99999999998875 45699999999999999


Q ss_pred             CChhHHHHHHh-cCCccccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338          221 RQEKIFNLIYT-MGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       221 ~~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                      |+.+++++|++ .+.+    ++.+|.+|+||||+|+..|+.++++.
T Consensus       230 ~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~  271 (285)
T 1wdy_A          230 KHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             TCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHH
Confidence            99999999999 5665    79999999999999999998766643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=8.4e-30  Score=240.02  Aligned_cols=222  Identities=9%  Similarity=0.040  Sum_probs=166.4

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCcc---ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRK---LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~---~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      .+|.+|+||||+|+..|+.+++++|++..+.   .++.+|..|+||||+|+..|       ..++++.++....      
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~------   69 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-------QPEIAEALLGAGC------   69 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTT-------CHHHHHCCCSCCC------
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcC-------CHHHHHHHHHcCC------
Confidence            4688999999999999999999999988653   58899999999999999999       3555555543221      


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK  173 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~  173 (488)
                                +....+..|.||||.|+..++.++++.+++.+....                         ........+
T Consensus        70 ----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-------------------------~~~~~~~~~  114 (236)
T 1ikn_D           70 ----------DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH-------------------------LHSILKATN  114 (236)
T ss_dssp             ----------CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS-------------------------SSCGGGCCC
T ss_pred             ----------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-------------------------HHHHhhccC
Confidence                      112245678999999999999988888887653210                         000011256


Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccC-CCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHH
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDD-YNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILH  252 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLh  252 (488)
                      ..|.||||+|+..|+.+++++|++.+++... +|. .|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~  189 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQ  189 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHH
Confidence            7799999999999999999999999988654 466 999999999999999999999999887    7999999999999


Q ss_pred             HHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          253 QAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       253 lA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      +|+..|+.++++.|..                 .-........|.+|.||.+...+
T Consensus       190 ~A~~~~~~~~~~~Ll~-----------------~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          190 LTWGRPSTRIQQQLGQ-----------------LTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             GCTTSSCHHHHHHHHT-----------------TSCGGGSSCCCCCTTTCCCCC--
T ss_pred             HHHccCchHHHHHHHH-----------------cchhhhhcCCccchHHHHhhhcc
Confidence            9999998766543311                 00112234678899999887543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=3.8e-29  Score=243.76  Aligned_cols=219  Identities=13%  Similarity=-0.009  Sum_probs=166.1

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .+.+|.||||.||..|+.+++++|++.+. .++.+|.+|.||||+||..|       +.++++.|+.....+        
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~--------   99 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGA-DINYANVDGLTALHQACIDD-------NVDMVKFLVENGANI--------   99 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHHTT-------CHHHHHHHHHTTCCT--------
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcC-------CHHHHHHHHHCCCCC--------
Confidence            45678999999999999999999999964 57899999999999999999       467788777654322        


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                              ...+..|.||||.|+..++.++++.|++.+.                            ..+.   .+.+|.
T Consensus       100 --------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~----------------------------~~~~---~~~~g~  140 (299)
T 1s70_B          100 --------NQPDNEGWIPLHAAASCGYLDIAEYLISQGA----------------------------HVGA---VNSEGD  140 (299)
T ss_dssp             --------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----------------------------CTTC---CCTTSC
T ss_pred             --------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC----------------------------CCCC---cCCCCC
Confidence                    1235578999999999888877777766542                            2221   466788


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCc--------------------------eeeccCCCccHHHHHHhcCChhHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDI--------------------------IWCYDDYNRHIFSYATLQRQEKIFNLIYT  231 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~--------------------------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  231 (488)
                      ||||+|+..|+.++++.++......                          ....+..|+||||+|+.+|+.+++++|++
T Consensus       141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  220 (299)
T 1s70_B          141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (299)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            9999999888888888777543221                          22346788999999999999999999998


Q ss_pred             cCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHH
Q 011338          232 MGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHK  311 (488)
Q Consensus       232 ~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~  311 (488)
                      .|++    +|.+|.+|+||||+|+..|+.++++.|.                +   ...+.+.+|++|+||++++.+...
T Consensus       221 ~g~d----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~~~~  277 (299)
T 1s70_B          221 ARYD----VNIKDYDGWTPLHAAAHWGKEEACRILV----------------E---NLCDMEAVNKVGQTAFDVADEDIL  277 (299)
T ss_dssp             TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHH----------------H---TTCCTTCCCTTSCCTTTSCCSGGG
T ss_pred             cCCC----CCCcCCCCCcHHHHHHhcCCHHHHHHHH----------------H---cCCCCCCcCCCCCCHHHHHHHHHH
Confidence            8876    7888999999999999988866553221                0   123456788899999998876544


Q ss_pred             HHH
Q 011338          312 KLV  314 (488)
Q Consensus       312 ~l~  314 (488)
                      +..
T Consensus       278 ~~l  280 (299)
T 1s70_B          278 GYL  280 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-28  Score=240.04  Aligned_cols=220  Identities=12%  Similarity=-0.010  Sum_probs=172.5

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.+.+.+.   .|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|       ..++++
T Consensus        55 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~g-------~~~~v~  123 (299)
T 1s70_B           55 EVLRLLERGADINY---ANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAASCG-------YLDIAE  123 (299)
T ss_dssp             HHHHHHHHCCCTTC---BCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT-------CHHHHH
T ss_pred             HHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcC-------CHHHHH
Confidence            36788888876544   7889999999999999999999999984 557899999999999999999       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .++.....+                ...+..|.||+|.|+..++.++++.++......+.........  .....+..++
T Consensus       124 ~Ll~~g~~~----------------~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~l  185 (299)
T 1s70_B          124 YLISQGAHV----------------GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER--IMLRDARQWL  185 (299)
T ss_dssp             HHHHTTCCT----------------TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHhCCCCC----------------CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhh--HHHHHHHHHH
Confidence            777543322                1245578999999999999999998887665444333222211  1223334444


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~  240 (488)
                      ......+.  ..+..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    +
T Consensus       186 ~~~~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~  258 (299)
T 1s70_B          186 NSGHINDV--RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD----M  258 (299)
T ss_dssp             HHTCCCCC--CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----T
T ss_pred             hccCcchh--hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----C
Confidence            43322221  24677999999999999999999999998775 45699999999999999999999999999987    7


Q ss_pred             ccccCCCCcHHHHHHH
Q 011338          241 TNWDKAHNNILHQAAF  256 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~  256 (488)
                      +.+|.+|+||||+|+.
T Consensus       259 ~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          259 EAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TCCCTTSCCTTTSCCS
T ss_pred             CCcCCCCCCHHHHHHH
Confidence            8999999999999965

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=8.2e-29  Score=233.32  Aligned_cols=206  Identities=12%  Similarity=0.015  Sum_probs=163.0

Q ss_pred             cccccc----cCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhh
Q 011338            2 VRYLYR----ETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLA   77 (488)
Q Consensus         2 v~~L~~----~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~   77 (488)
                      +++|++    .+.+.+   .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|       ..+
T Consensus        25 v~~Ll~~~~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~-------~~~   93 (241)
T 1k1a_A           25 VHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHR-------SPT   93 (241)
T ss_dssp             HHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHH
T ss_pred             HHHHHHHHHhcCCCCC---cccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcC-------CHH
Confidence            455655    333333   37889999999999999999999999985 557889999999999999998       456


Q ss_pred             HHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHH
Q 011338           78 FWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLS  157 (488)
Q Consensus        78 ~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~  157 (488)
                      .++.++.....            ........+..|.||+|.|+..++.++++.+++.+                      
T Consensus        94 ~~~~Ll~~~~~------------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----------------------  139 (241)
T 1k1a_A           94 CLRALLDSAAP------------GTLDLEARNYDGLTALHVAVNTECQETVQLLLERG----------------------  139 (241)
T ss_dssp             HHHHHHHHSCT------------TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----------------------
T ss_pred             HHHHHHHcCCC------------ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC----------------------
Confidence            67766654321            01111224567899999999888777777666554                      


Q ss_pred             HHhhhhcccCchhhhh-cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcc
Q 011338          158 CVCREISTQGESQFEK-VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKK  236 (488)
Q Consensus       158 ~l~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  236 (488)
                            .+.+.   .+ ..|.||||+|++.|+.+++++|++.+.+. +..|..|+||||+|+.+|+.+++++|++.|++ 
T Consensus       140 ------~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-  208 (241)
T 1k1a_A          140 ------ADIDA---VDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-  208 (241)
T ss_dssp             ------CCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             ------CCccc---ccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-
Confidence                  22222   33 56999999999999999999999998875 45699999999999999999999999999987 


Q ss_pred             ccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          237 NSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       237 ~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                         ++.+|.+|+||||+|+..|+.++++.+
T Consensus       209 ---~~~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          209 ---SSLKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             ---TTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             ---CCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence               789999999999999999887776554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=3.7e-28  Score=227.90  Aligned_cols=209  Identities=11%  Similarity=-0.010  Sum_probs=162.7

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      .|+||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+..|       ..++++.++.....+...        
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~--------   66 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD-------NLEAAMVLMEAAPELVFE--------   66 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHHHCGGGGGC--------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-------CHHHHHHHHHcCchhccc--------
Confidence            48999999999999999999999877788999999999999999999       467888887665433110        


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                         .....+..|.||||.|+..++.++++.+++.+...- .......            .    .. .....|..|.|||
T Consensus        67 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~------------~----~~-~~~~~~~~g~t~L  125 (232)
T 2rfa_A           67 ---PMTSELYEGQTALHIAVINQNVNLVRALLARGASVS-ARATGSV------------F----HY-RPHNLIYYGEHPL  125 (232)
T ss_dssp             ---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGG------------G----SC-CTTCSCCCCSSHH
T ss_pred             ---cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCCcc------------e----ee-cccccccCCCCHH
Confidence               112235578999999999999999999888763211 0000000            0    00 0111456799999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHH----HHHHhcCCccc--cccccccCCCCcHHHHH
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIF----NLIYTMGAKKN--SVATNWDKAHNNILHQA  254 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv----~~Ll~~~~~~~--~~~~~~D~~G~TpLhlA  254 (488)
                      |+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++    ++|++.|++..  .+.+.+|.+|+||||+|
T Consensus       126 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A  204 (232)
T 2rfa_A          126 SFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA  204 (232)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence            9999999999999999998875 45699999999999999999988    99999987521  22368999999999999


Q ss_pred             HHhCCCCCcccc
Q 011338          255 AFLAPSSQLDRV  266 (488)
Q Consensus       255 ~~~~~~~~v~~l  266 (488)
                      +..|+.++++.|
T Consensus       205 ~~~g~~~~v~~L  216 (232)
T 2rfa_A          205 GVEGNIVMFQHL  216 (232)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            999998776543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=7.2e-29  Score=232.47  Aligned_cols=200  Identities=11%  Similarity=-0.057  Sum_probs=161.8

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|+...+..  ...+|.+|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+..|       ..++++.
T Consensus        22 v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~   91 (231)
T 3aji_A           22 LKERILADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAG-------XDEIVKA   91 (231)
T ss_dssp             HHHHHHHCGGG--GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHT-------CHHHHHH
T ss_pred             HHHHHHhchhh--hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCcCCCCCCHHHHHHHcC-------HHHHHHH
Confidence            45666665532  2247889999999999999999999999985 457889999999999999998       4667777


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                      ++.....+                ...+..|.||+|.|+..++.++++.+++.+                          
T Consensus        92 Ll~~g~~~----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--------------------------  129 (231)
T 3aji_A           92 LLVKGAHV----------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGG--------------------------  129 (231)
T ss_dssp             HHHTTCCT----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--------------------------
T ss_pred             HHHcCCCC----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------------------
Confidence            76543322                123557889999999888777777666543                          


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                        ...+.   ++..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.|++    ++
T Consensus       130 --~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~  199 (231)
T 3aji_A          130 --ANPDA---KDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS----IY  199 (231)
T ss_dssp             --CCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SC
T ss_pred             --CCCCC---cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CC
Confidence              22222   5677999999999999999999999998775 45699999999999999999999999999887    78


Q ss_pred             cccCCCCcHHHHHHHhCCCCCc
Q 011338          242 NWDKAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       242 ~~D~~G~TpLhlA~~~~~~~~v  263 (488)
                      .+|.+|+||||+|+..++.+++
T Consensus       200 ~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          200 IENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             CCCTTSCCHHHHSCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHH
Confidence            9999999999999988765444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=1.6e-28  Score=236.69  Aligned_cols=215  Identities=11%  Similarity=-0.027  Sum_probs=148.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.++.......+|..|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|       ...+++
T Consensus        24 ~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~-------~~~~v~   95 (282)
T 1oy3_D           24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTALHLACRVR-------AHTCAC   95 (282)
T ss_dssp             HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHHHHHTTTT-------CHHHHH
T ss_pred             HHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC-------CcchhH
Confidence            367888877764333357899999999999999999999999985 457899999999999999998       355666


Q ss_pred             HHhhhhhhhhhccc-------------------------------cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHH
Q 011338           81 KWIYSFIYIRSAYA-------------------------------SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVW  129 (488)
Q Consensus        81 ~li~~~~~v~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  129 (488)
                      .++...........                               ..............+..|.||||.|+..++.++++
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  175 (282)
T 1oy3_D           96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (282)
T ss_dssp             HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            66543211100000                               00000000112234557889999998877776666


Q ss_pred             HHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh-cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccC
Q 011338          130 KSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK-VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDD  208 (488)
Q Consensus       130 ~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~  208 (488)
                      .|++.+                            ...+.   ++ ..|+||||+|++.|+.+++++|++.+.+. +.+|.
T Consensus       176 ~Ll~~g----------------------------~~~~~---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~  223 (282)
T 1oy3_D          176 LLRDAG----------------------------ADLNK---PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMY  223 (282)
T ss_dssp             HHHHHT----------------------------CCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             HHHHcC----------------------------CCCCC---CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence            665543                            23322   33 34999999999999999999999998875 45699


Q ss_pred             CCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338          209 YNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       209 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~  259 (488)
                      .|+||||+|+.+|+.+++++|++.|++    ++.+|.+|.|||++|....+
T Consensus       224 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          224 GGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TSCCHHHHHHTSSCHHHHHHHHHTTCC----CCCCC---------------
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHcCCC----cCcCCCcccccccccCCccc
Confidence            999999999999999999999999987    79999999999999988754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=2e-28  Score=228.80  Aligned_cols=198  Identities=14%  Similarity=0.012  Sum_probs=158.0

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhC--ccccccccCCCChHHHHHhhCCCCCCCCchhhHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRY--RKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFW   79 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~   79 (488)
                      |++|+++++....  .+|.+|.||||+|+..|+.+++++|++.+  ++.....|..|+||||+|+..|       ..+++
T Consensus        18 v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~~   88 (228)
T 2dzn_A           18 VQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG-------NLEVV   88 (228)
T ss_dssp             HHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC-------CHHHH
T ss_pred             HHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC-------CHHHH
Confidence            5778877764332  37899999999999999999999999997  4433338899999999999998       45666


Q ss_pred             HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338           80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV  159 (488)
Q Consensus        80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l  159 (488)
                      +.++....              .......+..|.||+|.|+..++.++++.+++.+                        
T Consensus        89 ~~Ll~~g~--------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------------------------  130 (228)
T 2dzn_A           89 KSLYDRPL--------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG------------------------  130 (228)
T ss_dssp             HHHHSSSS--------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT------------------------
T ss_pred             HHHHhCCC--------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC------------------------
Confidence            76664321              0111224557899999999887776666665543                        


Q ss_pred             hhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHH-hcCCcccc
Q 011338          160 CREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIY-TMGAKKNS  238 (488)
Q Consensus       160 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~  238 (488)
                          .+.+.   +|..|.||||+|+..|+.+++++|++.++...+.+|..|+||||+|+..|+.+++++|+ +.|++   
T Consensus       131 ----~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~---  200 (228)
T 2dzn_A          131 ----ASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---  200 (228)
T ss_dssp             ----CCSCC---CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---
T ss_pred             ----CCccc---cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC---
Confidence                23322   56789999999999999999999999995556777999999999999999999999999 77876   


Q ss_pred             ccccccCCCCcHHHHHHHh
Q 011338          239 VATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       239 ~~~~~D~~G~TpLhlA~~~  257 (488)
                       ++.+|.+|+||||+|+..
T Consensus       201 -~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          201 -YDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             -SCCBCTTSCBGGGGCSST
T ss_pred             -CCccCCCCCcHHHHHHHH
Confidence             799999999999999764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=5e-28  Score=227.59  Aligned_cols=198  Identities=12%  Similarity=0.056  Sum_probs=162.6

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++++.+.+.   .|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|       ..++++
T Consensus        26 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~~~   94 (237)
T 3b7b_A           26 ICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCLHLAAKKG-------HYEVVQ   94 (237)
T ss_dssp             HHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred             HHHHHHHcCCCcCc---cCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcC-------CHHHHH
Confidence            46788888876554   6889999999999999999999999884 457889999999999999999       456667


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .++...               .......+..|.||+|.|+..++.++++.+++.+                         
T Consensus        95 ~Ll~~~---------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-------------------------  134 (237)
T 3b7b_A           95 YLLSNG---------------QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-------------------------  134 (237)
T ss_dssp             HHHTTT---------------CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-------------------------
T ss_pred             HHHhCC---------------CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence            666432               0111224557889999999887777777666544                         


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~  240 (488)
                         ...+.   ++..|.||||+|+..|+.+++++|++.+++.. .+|..|+||||+|+.+|+.+++++|++.|++    +
T Consensus       135 ---~~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~  203 (237)
T 3b7b_A          135 ---SDINI---RDNEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSD----V  203 (237)
T ss_dssp             ---CCTTC---CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----T
T ss_pred             ---CCCCc---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC----C
Confidence               22222   56779999999999999999999999988754 5599999999999999999999999999887    7


Q ss_pred             ccccCCCCcHHHHHHHhCCC
Q 011338          241 TNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~~~~~  260 (488)
                      +.+|.+|+||||+|+..++.
T Consensus       204 ~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          204 TLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             TCCCTTSCCHHHHSCTTCHH
T ss_pred             CccCCCCCCHHHHHHHHHHH
Confidence            89999999999999998864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=3.9e-28  Score=222.39  Aligned_cols=188  Identities=13%  Similarity=0.072  Sum_probs=158.2

Q ss_pred             CCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338           20 TNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS   99 (488)
Q Consensus        20 ~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~   99 (488)
                      ..|.||||.|+..|+.+.++.|++.++..++.+|.+|.||||+|+..|       ..++++.++....++          
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~----------   65 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN-------DIEIAKALIDRGADI----------   65 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCT----------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCC----------
Confidence            467899999999999999999999988789999999999999999999       467778777653322          


Q ss_pred             CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchH
Q 011338          100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV  179 (488)
Q Consensus       100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tp  179 (488)
                            ...+..+.||+|.|+..++.++++.+++.+..                           ..+   .++..|.||
T Consensus        66 ------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---------------------------~~~---~~~~~g~t~  109 (201)
T 3hra_A           66 ------NLQNSISDSPYLYAGAQGRTEILAYMLKHATP---------------------------DLN---KHNRYGGNA  109 (201)
T ss_dssp             ------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---------------------------CTT---CCCTTSCCS
T ss_pred             ------CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc---------------------------ccc---cccCCCCcH
Confidence                  12455788999999998888888777644321                           111   156779999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC-----hhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ-----EKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      ||+|+..|+.+++++|++.++...+.+|..|+||||+|+..++     .+++++|++.|++    ++.+|.+|+||||+|
T Consensus       110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A  185 (201)
T 3hra_A          110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYA  185 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHH
Confidence            9999999999999999999955566779999999999999998     8999999999887    799999999999999


Q ss_pred             HHhCCCCCcc
Q 011338          255 AFLAPSSQLD  264 (488)
Q Consensus       255 ~~~~~~~~v~  264 (488)
                      +..|+.++++
T Consensus       186 ~~~~~~~~~~  195 (201)
T 3hra_A          186 NQKGYTEISK  195 (201)
T ss_dssp             HHHTCHHHHH
T ss_pred             HHcCCHhHHH
Confidence            9999976654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=237.71  Aligned_cols=191  Identities=8%  Similarity=0.002  Sum_probs=159.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.+.+.+.   +|.+|+||||+|+..|+.+++++|++. +..++.+|.+|+||||+|+..|       ..++++
T Consensus        74 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~-------~~~~v~  142 (285)
T 3d9h_A           74 SLRNLISQGWAVNI---ITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSG-------SWDCVN  142 (285)
T ss_dssp             HHHHHHHTTCCSCE---ECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHT-------CHHHHH
T ss_pred             HHHHHHHCCCCCCC---cCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcC-------HHHHHH
Confidence            36788888766544   788999999999999999999999998 4557899999999999999998       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .++.....+                 .....|.||+|.|+..++.++++.+++.+                         
T Consensus       143 ~Ll~~g~~~-----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-------------------------  180 (285)
T 3d9h_A          143 LLLQHGASV-----------------QPESDLASPIHEAARRGHVECVNSLIAYG-------------------------  180 (285)
T ss_dssp             HHHHTTCCS-----------------SCSCTTSCHHHHHHHHTCHHHHHHHHHTT-------------------------
T ss_pred             HHHHCCCCC-----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence            776543221                 12334889999999888877777766544                         


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~  240 (488)
                         .+.+.   +|..|.||||+|+..|+.+++++|++.+++..  .|..|+||||+|+.+|+.+++++|++.|++    +
T Consensus       181 ---~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~  248 (285)
T 3d9h_A          181 ---GNIDH---KISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGAD----T  248 (285)
T ss_dssp             ---CCTTC---CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC----T
T ss_pred             ---CCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----C
Confidence               22222   57789999999999999999999999988765  388999999999999999999999999886    7


Q ss_pred             ccccCCCCcHHHHHHH
Q 011338          241 TNWDKAHNNILHQAAF  256 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~  256 (488)
                      +.+|.+|+||||+|+.
T Consensus       249 ~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          249 QAKNAEGKRPVELVPP  264 (285)
T ss_dssp             TCCCTTSCCGGGGSCT
T ss_pred             CCcCCCCCCHHHHhcC
Confidence            9999999999999994

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=6.9e-28  Score=215.36  Aligned_cols=150  Identities=16%  Similarity=0.146  Sum_probs=129.1

Q ss_pred             hHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCC
Q 011338           24 MLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDI  103 (488)
Q Consensus        24 T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~  103 (488)
                      ++|+.||+.|+.++|+.||+.+ .+++.+|.+|+||||+|+..++                                   
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~-----------------------------------   49 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGH-----------------------------------   49 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC-----------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCC-----------------------------------
Confidence            5799999999999999999985 5589999999999999999982                                   


Q ss_pred             CCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHH
Q 011338          104 ERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIA  183 (488)
Q Consensus       104 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~A  183 (488)
                                                                       .++++.+++.+.+++.   +|.+|+||||+|
T Consensus        50 -------------------------------------------------~~~~~~ll~~gad~~~---~d~~g~TpLh~A   77 (169)
T 4gpm_A           50 -------------------------------------------------KEVVKLLISKGADVNA---KDSDGRTPLHHA   77 (169)
T ss_dssp             -------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHHHHH
T ss_pred             -------------------------------------------------HHHHHHHHhcccchhh---hccCCCCHHHHH
Confidence                                                             1233344444444433   677899999999


Q ss_pred             HHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCc
Q 011338          184 VKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       184 a~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v  263 (488)
                      ++.|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+..|+.+++
T Consensus        78 ~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~g~~~iv  152 (169)
T 4gpm_A           78 AENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDLAREHGNEEVV  152 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999885 45699999999999999999999999999887    799999999999999999998777


Q ss_pred             ccc
Q 011338          264 DRV  266 (488)
Q Consensus       264 ~~l  266 (488)
                      +.|
T Consensus       153 ~~L  155 (169)
T 4gpm_A          153 KLL  155 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=9.9e-28  Score=232.93  Aligned_cols=187  Identities=9%  Similarity=-0.048  Sum_probs=154.2

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|.||||+|+..|+.+++++|++.+.+ ++.+  +|+||||+|+..|       ..++++.++....++       
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~-------   88 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLE-------DTKIVKILLFSGLDD-------   88 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSS-------SCHHHHHHHHTTCCT-------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcC-------CHHHHHHHHHCCCCC-------
Confidence            4789999999999999999999999999544 5655  5999999999999       466778777654322       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                               ...+..|.||||.|+..++.++++.+++.+                            .+.+.   ++..|
T Consensus        89 ---------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----------------------------a~~~~---~~~~g  128 (285)
T 3kea_A           89 ---------SQFDDKGNTALYYAVDSGNMQTVKLFVKKN----------------------------WRLMF---YGKTG  128 (285)
T ss_dssp             ---------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC----------------------------GGGGG---CSSSG
T ss_pred             ---------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC----------------------------CCCCc---cCCCC
Confidence                     124557899999999888887777776654                            22221   56667


Q ss_pred             -chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcH-HHHH
Q 011338          177 -KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNI-LHQA  254 (488)
Q Consensus       177 -~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp-LhlA  254 (488)
                       .||||+|+..|+.+++++|++.+++...  ...|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+|| ||+|
T Consensus       129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~n~~~~~g~t~~L~~A  202 (285)
T 3kea_A          129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS----TNTNNSLLFIPDIKLA  202 (285)
T ss_dssp             GGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHH----TCTTCCCBCCTTHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCC----CCcccCCCCChHHHHH
Confidence             7999999999999999999999887522  22899999999999999999999999876    79999999998 9999


Q ss_pred             HHhCCCCCcccc
Q 011338          255 AFLAPSSQLDRV  266 (488)
Q Consensus       255 ~~~~~~~~v~~l  266 (488)
                      +..|+.++++.+
T Consensus       203 ~~~~~~~~v~~L  214 (285)
T 3kea_A          203 IDNKDIEMLQAL  214 (285)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            999998888765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.2e-27  Score=230.44  Aligned_cols=183  Identities=10%  Similarity=0.052  Sum_probs=127.0

Q ss_pred             CCCCCchhHHHHHHHcCCcc-HHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           17 DKGTNGAMLLTSCIIDDIFD-IPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~d-iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      ..|..|.||||.|+..++.+ ++++|++. +.+++.+|.+|+||||+||..|+       .++++.|+....++      
T Consensus        47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~TpLh~A~~~g~-------~~~v~~Ll~~~a~~------  112 (269)
T 4b93_B           47 AADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGR-------ADLIPLLLKHGANA------  112 (269)
T ss_dssp             ----------------------------C-CCCTTCCCTTSCCHHHHHHHTTC-------TTHHHHHHHTTCCT------
T ss_pred             ccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc-------HHHHHHHHhcCCCc------
Confidence            36788999999999988765 77788877 55689999999999999999994       55777776543322      


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG  175 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~  175 (488)
                                ......|.||+|.++..++.++++.+++.+                            .+.+.   +|..
T Consensus       113 ----------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g----------------------------~~~n~---~d~~  151 (269)
T 4b93_B          113 ----------GARNADQAVPLHLACQQGHFQVVKCLLDSN----------------------------AKPNK---KDLS  151 (269)
T ss_dssp             ----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCSCC---CCTT
T ss_pred             ----------CccCCCCCCccccccccChHHHHHHHHHCC----------------------------CCCCC---CCCC
Confidence                      123557889999998777666666555433                            33333   6778


Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHH
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAA  255 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~  255 (488)
                      |+||||+||+.|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+
T Consensus       152 g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~  226 (269)
T 4b93_B          152 GNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS----VQVLNKRQRTAVDCAE  226 (269)
T ss_dssp             CCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSGGGSC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHH
Confidence            999999999999999999999998875 45699999999999999999999999999987    7999999999999998


Q ss_pred             HhCC
Q 011338          256 FLAP  259 (488)
Q Consensus       256 ~~~~  259 (488)
                      ++++
T Consensus       227 ~~~~  230 (269)
T 4b93_B          227 QNSK  230 (269)
T ss_dssp             TTCH
T ss_pred             hCCc
Confidence            7654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=2.1e-27  Score=226.42  Aligned_cols=214  Identities=9%  Similarity=-0.060  Sum_probs=154.9

Q ss_pred             CchhHHHHHHHcCCccHH----HHHHHhCcccccc----ccCCCChHHHHHhhC---CCCCCCCchhhHHHHHhhhhhhh
Q 011338           21 NGAMLLTSCIIDDIFDIP----LDLLQRYRKLAYA----QDNDGDTAIDMLAQK---PSAFPSGTQLAFWKKWIYSFIYI   89 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div----~~LL~~~~~~~~~----~d~~G~TpLh~Aa~~---g~~~~s~~~l~~~~~li~~~~~v   89 (488)
                      .|+||||.||..|+.+.+    ++|++.+ ..++.    +|.+|+||||+||..   |       ..++++.|+......
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g-~~i~~~~~~~d~~g~t~L~~A~~~~~~g-------~~~~v~~Ll~~g~~~   72 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS-KYLTDSAYTEGSTGKTCLMKAVLNLQDG-------VNACIMPLLQIDKDS   72 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSBTTTTBCHHHHHHHTCBTT-------BCTTHHHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC-CCcccccccCCCCCCCHHHHHHHccccc-------hHHHHHHHHhcCCcc
Confidence            389999999999999854    5555564 45676    899999999999998   7       456788888776554


Q ss_pred             hhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCch
Q 011338           90 RSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGES  169 (488)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~  169 (488)
                      ....     ...+....+.+..|.||||.|+..++.++++.|++.+... +..+....            .    ..+ .
T Consensus        73 ~~~~-----~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~------------~----~~~-~  129 (256)
T 2etb_A           73 GNPK-----PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRF------------F----QKH-Q  129 (256)
T ss_dssp             TCSS-----CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGG------------G----SCC-S
T ss_pred             cchh-----hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccc------------c----ccc-c
Confidence            3211     0111112223457999999999999998888888765321 00000000            0    000 0


Q ss_pred             hhhhcCcchHHHHHHHcCcHHHHHHHHH---hCCCceeeccCCCccHHHHHHh--cCChh-------HHHHHHhcCCccc
Q 011338          170 QFEKVGIKKVVFIAVKHGIVEFITEIMK---HYPDIIWCYDDYNRHIFSYATL--QRQEK-------IFNLIYTMGAKKN  237 (488)
Q Consensus       170 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~  237 (488)
                      ...+..|.||||+|+..|+.+++++|++   .+.+. +.+|.+|+||||+|+.  +++.+       ++++|++.|++..
T Consensus       130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence            0123349999999999999999999999   77664 4669999999999999  88888       9999999987621


Q ss_pred             ---cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          238 ---SVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       238 ---~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                         .+.+.+|.+|+||||+|+..|+.++++.|
T Consensus       209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence               01189999999999999999998777544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=1.4e-27  Score=237.08  Aligned_cols=243  Identities=13%  Similarity=0.046  Sum_probs=162.0

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccC-CCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDN-DGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+.+|+|+||.||++|+.|+|++||+.+. +++.+|. .|+||||+||..|       +.++++.|+.....+.      
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g-------~~~iv~~Ll~~ga~~~------   86 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMS-------REDIVELLLRHGADPV------   86 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTT------
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcC-------CHHHHHHHHHcCCchh------
Confidence            34568999999999999999999999954 5777765 5999999999999       4678888876544321      


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHH--Hhh----HhHHHHHHHHhhhhcccCc--
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVK--LAH----VQTQELLSCVCREISTQGE--  168 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~h----~~~~~il~~l~~~~~~~~~--  168 (488)
                                ..+..+.++++.+...+.......++..+.. ++..+..+  ..|    .+..++++.+++.+...+.  
T Consensus        87 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~  155 (337)
T 4g8k_A           87 ----------LRKKNGATPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR  155 (337)
T ss_dssp             ----------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ----------hhccCCCchhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence                      1223344455555555555554444443311 00000000  001    1223444444444333221  


Q ss_pred             -----hhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC----hhHHHHHHhcCCccccc
Q 011338          169 -----SQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ----EKIFNLIYTMGAKKNSV  239 (488)
Q Consensus       169 -----~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~  239 (488)
                           ....+..|.||||+|++.|+.+++++|+++.+...+.+|..|+|+||.++..++    ..++++|++.|++    
T Consensus       156 ~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad----  231 (337)
T 4g8k_A          156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----  231 (337)
T ss_dssp             CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC----
T ss_pred             ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC----
Confidence                 112356789999999999999999999976444455678999999998876654    3578889998876    


Q ss_pred             cccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhc--cchhHHHhhcCCCCchhhhhHH
Q 011338          240 ATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIV--QPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       240 ~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      +|.+|.+|+||||+|+..|+.++++                    .++  ...+.+.+|++|+||++++.+.
T Consensus       232 ~n~~d~~g~t~L~~a~~~~~~~~v~--------------------~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          232 VNVRGERGKTPLILAVEKKHLGLVQ--------------------RLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             TTCCCGGGCCHHHHHHHTTCHHHHH--------------------HHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCCcCCCCCCHHHHHHHhhhhHHHH--------------------HHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            7899999999999999998855442                    222  2345677889999999987653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=8.2e-28  Score=242.58  Aligned_cols=248  Identities=12%  Similarity=0.038  Sum_probs=175.7

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCcccccccc-CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQD-NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      .+|..|.||||+|+..| .+++++|+..   .++.+| .+|+||||+||..|+..       .++.++......   .++
T Consensus        89 ~~~~~g~t~L~~Aa~~~-~~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~-------~v~~Ll~~~~~~---ll~  154 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGS-YAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAE-------KSEDLIVHEAKE---CIA  154 (373)
T ss_dssp             -----CCCHHHHHHHSS-SCCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCS-------CCTTHHHHHHHH---HHH
T ss_pred             CCCCCCccHHHHHhcCC-chHHHHhccc---cccccCCcCCCCHHHHHHHCCCHH-------HHHHHHHHHHHH---HHh
Confidence            46889999999999955 5888888653   467777 78999999999999543       233333211100   000


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHHHHHHhhhh---cccC
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQELLSCVCREI---STQG  167 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~il~~l~~~~---~~~~  167 (488)
                      . .    .+....+..|.||||.|+..++.++++.|++.+... ..........|    .+..++++.|++.+   ...+
T Consensus       155 ~-g----a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  229 (373)
T 2fo1_E          155 A-G----ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE  229 (373)
T ss_dssp             T-C----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS
T ss_pred             c-C----CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh
Confidence            0 0    011124567899999999999999999999986421 11111111112    23457778887765   3333


Q ss_pred             chhhhhcCcchHHHHHHHcC---cHHHHHHHHHhCCCcee-------eccCCCccHHHHHHhcCChhHHHHHHhcC-Ccc
Q 011338          168 ESQFEKVGIKKVVFIAVKHG---IVEFITEIMKHYPDIIW-------CYDDYNRHIFSYATLQRQEKIFNLIYTMG-AKK  236 (488)
Q Consensus       168 ~~~~~~~~g~tpLh~Aa~~G---~~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~  236 (488)
                      .   .|..|.||||+|+..|   +.+++++|++.+++...       ..|..|+||||+|+.+|+.+++++|++.+ .+ 
T Consensus       230 ~---~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-  305 (373)
T 2fo1_E          230 E---LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-  305 (373)
T ss_dssp             C---CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-
T ss_pred             h---cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-
Confidence            2   5788999999999998   99999999999887543       24779999999999999999999999875 44 


Q ss_pred             ccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          237 NSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       237 ~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                         ++.+|.+|+||||+|+..|+.++++.|.                +   ...+.+.+|.+|+||++++.+.
T Consensus       306 ---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll----------------~---~gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          306 ---KDKQDEDGKTPIMLAAQEGRIEVVMYLI----------------Q---QGASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             ---TTCCCTTCCCHHHHHHHHTCHHHHHHHH----------------H---TTCCSSCCCSSSCCHHHHHHHT
T ss_pred             ---ccCcCCCCCCHHHHHHHcCCHHHHHHHH----------------H---cCCCccCCCCCCCCHHHHHHHc
Confidence               7999999999999999999976654321                0   2234567899999999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=9.3e-27  Score=231.32  Aligned_cols=221  Identities=13%  Similarity=0.062  Sum_probs=168.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++.+.+.   +|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|       ..++++
T Consensus        73 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~  141 (351)
T 3utm_A           73 IVQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKN-------RVEVCS  141 (351)
T ss_dssp             HHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT-------CHHHHH
T ss_pred             HHHHHHHcCCCCCc---cCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence            47889998876554   7889999999999999999999999985 457889999999999999999       467777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHH---------------------HHHhhccchh-
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMV---------------------WKSLNLFVPA-  138 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~---------------------~~ll~~~~~~-  138 (488)
                      .++....+..                ..+..+.++++.+...+..+..                     ..++...... 
T Consensus       142 ~Ll~~g~~~~----------------~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (351)
T 3utm_A          142 LLLSHGADPT----------------LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF  205 (351)
T ss_dssp             HHHHTTCCTT----------------CCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred             HHHHcCCCCc----------------cccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence            7776543221                1234556666665544444333                     3333222110 


Q ss_pred             -------hhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCc
Q 011338          139 -------IKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNR  211 (488)
Q Consensus       139 -------~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~  211 (488)
                             .....+....|....++++.|++.+.+.+.   +|.+|+||||+|++.|+.+++++|++.+.+. +.+|..|+
T Consensus       206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~  281 (351)
T 3utm_A          206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE---KNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQ  281 (351)
T ss_dssp             CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC---cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence                   111122222233557888888888776654   6788999999999999999999999998875 45699999


Q ss_pred             cHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          212 HIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       212 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      ||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|..
T Consensus       282 t~L~~A~~~~~~~~v~~Ll~~gad----~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHSCH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCChhhhhhH
Confidence            999999999999999999999987    78999999999999843

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=9.6e-27  Score=211.98  Aligned_cols=156  Identities=11%  Similarity=0.069  Sum_probs=133.8

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+                            
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~----------------------------   80 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNR----------------------------   80 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTC----------------------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhc-cccccccccCccHHHHHHHcCC----------------------------
Confidence            47899999999999999999999999984 4578899999999999999982                            


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                                                                              .++++.|++.+...+.   +|..|
T Consensus        81 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g  101 (192)
T 2rfm_A           81 --------------------------------------------------------LGIAEKLLSKGSNVNT---KDFSG  101 (192)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHTCCTTC---CCTTS
T ss_pred             --------------------------------------------------------HHHHHHHHHCCCCCCC---CCCCC
Confidence                                                                    1344444444444333   57789


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+.
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~  176 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTAEASARI  176 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH
Confidence            99999999999999999999998875 45699999999999999999999999999876    78999999999999999


Q ss_pred             hCCCCCccc
Q 011338          257 LAPSSQLDR  265 (488)
Q Consensus       257 ~~~~~~v~~  265 (488)
                      .|+.++++.
T Consensus       177 ~~~~~~v~~  185 (192)
T 2rfm_A          177 FGRQEVIKI  185 (192)
T ss_dssp             TTCHHHHHH
T ss_pred             hCcHHHHHH
Confidence            999776543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=9.9e-27  Score=223.98  Aligned_cols=220  Identities=10%  Similarity=-0.034  Sum_probs=156.1

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhC---ccccc----cccCCCChHHHHHhhC---CCCCCCCchhhHHHHHhhhh
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRY---RKLAY----AQDNDGDTAIDMLAQK---PSAFPSGTQLAFWKKWIYSF   86 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~---~~~~~----~~d~~G~TpLh~Aa~~---g~~~~s~~~l~~~~~li~~~   86 (488)
                      ..|.+|+||||.||..|+.++++.|++..   +..++    .+|.+|+||||+||..   |       ..++++.|+...
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g-------~~~~v~~Ll~~g   80 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG-------QNDTIALLLDVA   80 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTT-------BCHHHHHHHHHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcC-------ChHHHHHHHHhh
Confidence            47899999999999999999999999852   22222    4588999999999976   6       467888888765


Q ss_pred             hhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhccc
Q 011338           87 IYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQ  166 (488)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~  166 (488)
                      .....+..     ..+......+..|.||||.|+..++.++++.|++.+... +..+..+            ...    .
T Consensus        81 a~~~~~~~-----~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~------------~~~----~  138 (273)
T 2pnn_A           81 RKTDSLKQ-----FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGD------------FFK----K  138 (273)
T ss_dssp             HHTTCHHH-----HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSG------------GGS----S
T ss_pred             ccccchhH-----HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Ccccccc------------ccc----c
Confidence            54221100     001111123457899999999999999998888776321 0000000            000    0


Q ss_pred             CchhhhhcCcchHHHHHHHcCcHHHHHHHHH---hCCCceeeccCCCccHHHHHHhcCC---------hhHHHHHHhcCC
Q 011338          167 GESQFEKVGIKKVVFIAVKHGIVEFITEIMK---HYPDIIWCYDDYNRHIFSYATLQRQ---------EKIFNLIYTMGA  234 (488)
Q Consensus       167 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~  234 (488)
                      ......+..|.||||+|+..|+.+++++|++   .+.+. +.+|.+|+||||+|+..|+         .+++++|++.|+
T Consensus       139 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence            0011134579999999999999999999999   66664 5669999999999999998         799999999986


Q ss_pred             ccc---cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          235 KKN---SVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       235 ~~~---~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      +..   ..++.+|.+|+||||+|+..|+.++++.|
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  252 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI  252 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence            521   01246999999999999999997766443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=217.47  Aligned_cols=218  Identities=10%  Similarity=0.022  Sum_probs=171.0

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .|..|.||||.|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|       +.++++.++.....+.       
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~-------   69 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAG-YDVRQPDKENVTLLHWAAINN-------RIDLVKYYISKGAIVD-------   69 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTTCCTT-------
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHhC-------CHHHHHHHHHcCCcch-------
Confidence            5788999999999999999999999985 457889999999999999999       4667777775433221       


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhh----HhHHHHHHHHhhhhcccCchhhh
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAH----VQTQELLSCVCREISTQGESQFE  172 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h----~~~~~il~~l~~~~~~~~~~~~~  172 (488)
                              ......+.||+|.|+..++.++++.+++.+... ..........|    .+..++++.|++.+...+.   +
T Consensus        70 --------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~---~  138 (240)
T 3eu9_A           70 --------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM---M  138 (240)
T ss_dssp             --------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---C
T ss_pred             --------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc---c
Confidence                    112345789999999999999999999876321 11111111112    2345788888887666544   6


Q ss_pred             hcCcchHHHHHHHcCc-HHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          173 KVGIKKVVFIAVKHGI-VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       173 ~~~g~tpLh~Aa~~G~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +..|.||||+|+..|+ .++++.|++.+++.....+..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+|||
T Consensus       139 ~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l  214 (240)
T 3eu9_A          139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN----VDAQNIKGESAL  214 (240)
T ss_dssp             CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCBCTTSCBHH
T ss_pred             CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHH
Confidence            7789999999997776 89999999998886554334899999999999999999999999876    789999999999


Q ss_pred             HHHHHhCCCCCccc
Q 011338          252 HQAAFLAPSSQLDR  265 (488)
Q Consensus       252 hlA~~~~~~~~v~~  265 (488)
                      |+|++.|+.++++.
T Consensus       215 ~~A~~~~~~~~v~~  228 (240)
T 3eu9_A          215 DLAKQRKNVWMINH  228 (240)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCcHHHHHH
Confidence            99999999776643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=1.7e-26  Score=206.45  Aligned_cols=152  Identities=14%  Similarity=0.061  Sum_probs=130.1

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      +.||||.|+..|+.++++.|++.++..++.+|.+|+||||+|+..|+                                 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~---------------------------------   48 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE---------------------------------   48 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTC---------------------------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCC---------------------------------
Confidence            46899999999999999999999988889999999999999999982                                 


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                                                                         .++++.|++.+.+.+.   ++..|.||||
T Consensus        49 ---------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L~   74 (172)
T 3v30_A           49 ---------------------------------------------------IETVRFLLEWGADPHI---LAKERESALS   74 (172)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHTCCTTC---CCTTCCCHHH
T ss_pred             ---------------------------------------------------HHHHHHHHHcCCCchh---hcccCCCHHH
Confidence                                                               2344444444444333   5677999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSS  261 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~  261 (488)
                      +|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+..|+.+
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~  149 (172)
T 3v30_A           75 LASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALGYRK  149 (172)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHhCcHH
Confidence            999999999999999998875 45699999999999999999999999999876    7899999999999999999876


Q ss_pred             Cccc
Q 011338          262 QLDR  265 (488)
Q Consensus       262 ~v~~  265 (488)
                      +++.
T Consensus       150 ~~~~  153 (172)
T 3v30_A          150 VQQV  153 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=1.9e-26  Score=228.33  Aligned_cols=210  Identities=10%  Similarity=0.013  Sum_probs=144.2

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|...+.+.+.  .+|.+|+||||+|+..|+.++|++||+.+ .+++.+|.+|+||||+|+..|+..    ..+.++.
T Consensus       113 ~~~l~~~g~dvn~--~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~d~~g~TpLh~A~~~g~~~----~~~~~~~  185 (327)
T 1sw6_A          113 NDAFPNTQLNLNI--PVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNY----DSGTFEA  185 (327)
T ss_dssp             HHHCTTSCCCSCS--CCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHH----HTTCHHH
T ss_pred             HHHHHhcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhcccc----cHHHHHH
Confidence            3556666554443  26899999999999999999999999995 568899999999999999998300    0233455


Q ss_pred             Hhhhhhh-hhhccccCCCCCCCCCCCCCCCchhhhhHHHHH----HHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338           82 WIYSFIY-IRSAYASNNISHGDIERPHQGPAEHKNFFTRAM----TKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL  156 (488)
Q Consensus        82 li~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il  156 (488)
                      ++..... +.                ..+..|.||||.|+.    .++.++++.+++.+........   ..     .+.
T Consensus       186 ll~~~~~~~~----------------~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~---~~-----~i~  241 (327)
T 1sw6_A          186 LLDYLYPCLI----------------LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ---NR-----PIQ  241 (327)
T ss_dssp             HHHHHGGGGG----------------EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG---GC-----CEE
T ss_pred             HHHhhhcccc----------------CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc---ch-----HHH
Confidence            5543321 11                135678999999998    7788888888776522111000   00     000


Q ss_pred             HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcc
Q 011338          157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKK  236 (488)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  236 (488)
                      ..+...+.+.+   .++..|.||||.|+.      +++|++.+   .+.+|.+|+||||+|+++|+.+++++|++.|++ 
T Consensus       242 ~~~~~~g~~~~---~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-  308 (327)
T 1sw6_A          242 SGTNEKESKPN---DKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-  308 (327)
T ss_dssp             EC-------------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-
T ss_pred             hhhhcccCCcc---cccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            00011122222   267889999999996      89999984   345699999999999999999999999999987 


Q ss_pred             ccccccccCCCCcHHHHHHHhC
Q 011338          237 NSVATNWDKAHNNILHQAAFLA  258 (488)
Q Consensus       237 ~~~~~~~D~~G~TpLhlA~~~~  258 (488)
                         ++.+|.+|+||||+|++.|
T Consensus       309 ---~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          309 ---PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---TTCCCTTSCCGGGGTCC--
T ss_pred             ---CcccCCCCCCHHHHHHhcC
Confidence               7999999999999998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.8e-27  Score=222.29  Aligned_cols=176  Identities=9%  Similarity=0.027  Sum_probs=126.9

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      ++.|+.++.+....+..+.+|.||||.|+..|+.+++++|++.+. +++.+|.+|+||||+||..|+       .     
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpLh~A~~~g~-------~-----   67 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGAN-------Y-----   67 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTC-------H-----
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCC-------H-----
Confidence            577888888777767788999999999999999999999999855 578999999999999999982       2     


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                              ++++.|++
T Consensus        68 ------------------------------------------------------------------------~~v~~Ll~   75 (229)
T 2vge_A           68 ------------------------------------------------------------------------SIVDFLIT   75 (229)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    23334444


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHH--HhcCChhHHHHHHhcCCcc---
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYA--TLQRQEKIFNLIYTMGAKK---  236 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~~~~~~---  236 (488)
                      .+.+.+.   +|..|+||||+|+..|+.+++++|++.+++.....|.+|+||||+|  +..|+.+++++|++.|++.   
T Consensus        76 ~ga~~n~---~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           76 AGANVNS---PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             TTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence            4433332   4566777777777777777777777777765444345777777777  7777777777777654321   


Q ss_pred             -------------------------ccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338          237 -------------------------NSVATNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       237 -------------------------~~~~~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                                               +..++.+|.+|+||||+|+..|+.++|+.
T Consensus       153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence                                     12267889999999999999999988864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=5.7e-26  Score=219.45  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=123.6

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      +|.+|+||||+|+..|+.+++++|++.++..++.+|.+|.||||+|+.....                            
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~----------------------------  158 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK----------------------------  158 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC----------------------------
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh----------------------------
Confidence            5667777777777777777777777776556677777777777777754310                            


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                             ..+                            ..++++.+++.+...+.   .+..|.
T Consensus       159 -----------------------~~~----------------------------~~~~v~~Ll~~g~~~~~---~~~~g~  184 (276)
T 4hbd_A          159 -----------------------TQD----------------------------DIETVLQLFRLGNINAK---ASQAGQ  184 (276)
T ss_dssp             -----------------------SHH----------------------------HHHHHHHHHHHSCTTCC---CTTTCC
T ss_pred             -----------------------hhh----------------------------hHHHHHHHHHcCCCccc---cCCCCC
Confidence                                   111                            23444455554433222   567799


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHh-cCCccccccccccCCCCcHHHHHHH
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYT-MGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      ||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++ .|++    ++.+|.+|+||||+|+.
T Consensus       185 tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~  259 (276)
T 4hbd_A          185 TALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALD  259 (276)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHH
Confidence            9999999999999999999998885 4569999999999999999999999999 6766    79999999999999999


Q ss_pred             hCCCCCccc
Q 011338          257 LAPSSQLDR  265 (488)
Q Consensus       257 ~~~~~~v~~  265 (488)
                      .|+.++++.
T Consensus       260 ~g~~~iv~~  268 (276)
T 4hbd_A          260 AGQSEIASM  268 (276)
T ss_dssp             HTCHHHHHH
T ss_pred             cCCHHHHHH
Confidence            999776643

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=6e-26  Score=201.76  Aligned_cols=153  Identities=13%  Similarity=0.099  Sum_probs=130.5

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      +|.||||.|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+                                
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~--------------------------------   48 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQ--------------------------------   48 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTC--------------------------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCC--------------------------------
Confidence            5789999999999999999999995 5588999999999999999982                                


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                                                                          .++++.|++.+...+.   ++..|.|||
T Consensus        49 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L   73 (167)
T 3v31_A           49 ----------------------------------------------------IAVVEFLLQNGADPQL---LGKGRESAL   73 (167)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTCCCHH
T ss_pred             ----------------------------------------------------HHHHHHHHHcCCCCCC---cCCCCCcHH
Confidence                                                                2344444444433332   567799999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~  260 (488)
                      |+|+..|+.+++++|++.+++.. .+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+..|+.
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~  148 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMDLAVALGYR  148 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcH
Confidence            99999999999999999988754 5699999999999999999999999999876    689999999999999999997


Q ss_pred             CCcccc
Q 011338          261 SQLDRV  266 (488)
Q Consensus       261 ~~v~~l  266 (488)
                      ++++.+
T Consensus       149 ~~~~~L  154 (167)
T 3v31_A          149 SVQQVI  154 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=6.4e-26  Score=216.50  Aligned_cols=217  Identities=9%  Similarity=-0.072  Sum_probs=153.1

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHH----hCcccccccc----CCCChHHHHHh---hCCCCCCCCchhhHHHHHhhhhh
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQ----RYRKLAYAQD----NDGDTAIDMLA---QKPSAFPSGTQLAFWKKWIYSFI   87 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~----~~~~~~~~~d----~~G~TpLh~Aa---~~g~~~~s~~~l~~~~~li~~~~   87 (488)
                      +..|+|+||.||+.|+.+.++.|++    . +..++..+    .+|+||||+|+   +.|       +.++++.++....
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g-------~~~~v~~Ll~~g~   73 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAG-------RNDTIPILLDIAE   73 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTT-------BCTHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcC-------CHHHHHHHHHhcc
Confidence            4578999999999999997666666    5 33455554    77999999999   567       4567888887654


Q ss_pred             hhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccC
Q 011338           88 YIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQG  167 (488)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~  167 (488)
                      .......     ..+......+..|.||||.|+..++.++++.|++.+...- ..+..                ......
T Consensus        74 ~~~~~~~-----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~----------------~~~~~~  131 (260)
T 3jxi_A           74 KTGNMRE-----FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARG----------------RFFQPK  131 (260)
T ss_dssp             HTTCHHH-----HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEE----------------CCCSSS
T ss_pred             cccchHh-----hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccc----------------cccCcc
Confidence            3221100     0011112234588999999999998888888877652110 00000                000000


Q ss_pred             chhhhhcCcchHHHHHHHcCcHHHHHHHHH---hCCCceeeccCCCccHHHHHHhcCC---------hhHHHHHHhcCCc
Q 011338          168 ESQFEKVGIKKVVFIAVKHGIVEFITEIMK---HYPDIIWCYDDYNRHIFSYATLQRQ---------EKIFNLIYTMGAK  235 (488)
Q Consensus       168 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~  235 (488)
                      .....+..|.||||+|+..|+.+++++|++   .+.+. +.+|.+|+||||+|+..++         .+++++|++.|++
T Consensus       132 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  210 (260)
T 3jxi_A          132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK  210 (260)
T ss_dssp             CCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence            000122579999999999999999999999   66664 4669999999999999888         6999999999865


Q ss_pred             cc---cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          236 KN---SVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       236 ~~---~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      ..   ...+.+|.+|+||||+|+..|+.++++.|
T Consensus       211 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence            21   11278999999999999999998776543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=1.3e-25  Score=200.19  Aligned_cols=155  Identities=14%  Similarity=0.085  Sum_probs=129.6

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .....+.|+||.||+.|+.+++++|++.+ ..++.+|.+|.||||+|+..|+                            
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~----------------------------   59 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGH----------------------------   59 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC----------------------------
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCC----------------------------
Confidence            35678899999999999999999999985 4578899999999999999982                            


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                                                                              .++++.|++.+.+.+.   +|..|
T Consensus        60 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g   80 (169)
T 2y1l_E           60 --------------------------------------------------------LEIVEVLLKNGADVNA---VDHAG   80 (169)
T ss_dssp             --------------------------------------------------------HHHHHHHHHTTCCTTC---CCTTS
T ss_pred             --------------------------------------------------------HHHHHHHHHcCCCCCc---cCCCC
Confidence                                                                    2344444444444333   56779


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .||||+|+..|+.+++++|++.+++.. ..|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+.
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISID  155 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHH
Confidence            999999999999999999999988754 5689999999999999999999999999876    78999999999999999


Q ss_pred             hCCCCCcc
Q 011338          257 LAPSSQLD  264 (488)
Q Consensus       257 ~~~~~~v~  264 (488)
                      .|+.++++
T Consensus       156 ~~~~~~~~  163 (169)
T 2y1l_E          156 NGNEDLAE  163 (169)
T ss_dssp             TTCHHHHH
T ss_pred             hCCHHHHH
Confidence            99876553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=3.7e-26  Score=202.70  Aligned_cols=154  Identities=13%  Similarity=0.044  Sum_probs=130.4

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .|.+|.||||.|+..|+.++++.|++..+...+..|..|+||||+|+..|+                             
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----------------------------   54 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----------------------------   54 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTC-----------------------------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcCh-----------------------------
Confidence            578899999999999999999999998888888889999999999999982                             


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                                                             .++++.|++.+.+.+.   +|.+|.
T Consensus        55 -------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~   76 (165)
T 3twr_A           55 -------------------------------------------------------VSVVEYLLQHGADVHA---KDKGGL   76 (165)
T ss_dssp             -------------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSC
T ss_pred             -------------------------------------------------------HHHHHHHHhcCCCCCc---cCCCCC
Confidence                                                                   2344444454444433   577899


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      ||||+|+..|+.+++++|++.+.+.. .+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+. 
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~a~~-  150 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGAD----PTKKNRDGNTPLDLVKD-  150 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTGGGSCT-
T ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCChhHhHhc-
Confidence            99999999999999999999988754 5699999999999999999999999999876    79999999999999876 


Q ss_pred             CCCCCcc
Q 011338          258 APSSQLD  264 (488)
Q Consensus       258 ~~~~~v~  264 (488)
                      ++.++++
T Consensus       151 ~~~~i~~  157 (165)
T 3twr_A          151 GDTDIQD  157 (165)
T ss_dssp             TCHHHHH
T ss_pred             CChHHHH
Confidence            7655543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1e-25  Score=197.52  Aligned_cols=150  Identities=13%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      ++.|+||.|+..|+.+++++|++.++.. + .|..|.||||+|+..|+                                
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~--------------------------------   46 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGH--------------------------------   46 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTC--------------------------------
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCC--------------------------------
Confidence            4679999999999999999999997643 3 68899999999999882                                


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                                                                          .++++.|++.+...+.   ++..|.|||
T Consensus        47 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L   71 (153)
T 1awc_B           47 ----------------------------------------------------FSTTEVLLRAGVSRDA---RTKVDRTPL   71 (153)
T ss_dssp             ----------------------------------------------------HHHHHHHHTTTCCTTC---CCTTCCCHH
T ss_pred             ----------------------------------------------------HHHHHHHHHcCCCCCC---CCCCCCCHH
Confidence                                                                2334444444444333   567799999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~  260 (488)
                      |+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+..|+.
T Consensus        72 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           72 HMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCH
Confidence            9999999999999999998875 45699999999999999999999999999876    789999999999999999987


Q ss_pred             CCcc
Q 011338          261 SQLD  264 (488)
Q Consensus       261 ~~v~  264 (488)
                      ++++
T Consensus       147 ~i~~  150 (153)
T 1awc_B          147 DLAE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=2.7e-26  Score=213.66  Aligned_cols=201  Identities=11%  Similarity=0.101  Sum_probs=158.0

Q ss_pred             cCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCc
Q 011338           32 DDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPA  111 (488)
Q Consensus        32 ~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~  111 (488)
                      +|+.+++++|++++++..+..|.+|+||||+||..|       +.+.++.++.....+                ...+..
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~----------------~~~~~~   57 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS-------RSDAAKRLLEASADA----------------NIQDNM   57 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT----------------TCCCTT
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcC-------CHHHHHHHHHcCCCC----------------CCcCCC
Confidence            478899999999988766667999999999999999       467777777543322                124567


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHH
Q 011338          112 EHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEF  191 (488)
Q Consensus       112 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~  191 (488)
                      +.||+|.|+..++.++++.+++.+...                           .+   .++..|.||||+|+..|+.++
T Consensus        58 g~t~L~~A~~~~~~~~v~~Ll~~~~~~---------------------------~~---~~~~~g~t~L~~A~~~~~~~~  107 (223)
T 2f8y_A           58 GRTPLHAAVSADAQGVFQILIRNRATD---------------------------LD---ARMHDGTTPLILAARLAVEGM  107 (223)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHBTTSC---------------------------TT---CCCTTCCCHHHHHHHHTCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC---------------------------cc---cCCCCCCcHHHHHHHhCcHHH
Confidence            889999999988888888777654211                           11   146679999999999999999


Q ss_pred             HHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHH
Q 011338          192 ITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAAL  271 (488)
Q Consensus       192 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l  271 (488)
                      +++|++.+++. ...|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+..|+.++++.+.    
T Consensus       108 ~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----  178 (223)
T 2f8y_A          108 LEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNREETPLFLAAREGSYETAKVLL----  178 (223)
T ss_dssp             HHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHH----
T ss_pred             HHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCcCHHHHHHHcCCHHHHHHHH----
Confidence            99999998875 45689999999999999999999999999876    7899999999999999999866553221    


Q ss_pred             hhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          272 QMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       272 ~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                                  +   ...+.+.+|.+|.||++++.+.
T Consensus       179 ------------~---~ga~~~~~~~~g~t~l~~A~~~  201 (223)
T 2f8y_A          179 ------------D---HFANRDITDHMDRLPRDIAQER  201 (223)
T ss_dssp             ------------H---TTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ------------H---cCCCCccccccCCCHHHHHHHh
Confidence                        1   1234567789999999998664

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.4e-25  Score=196.96  Aligned_cols=150  Identities=13%  Similarity=0.073  Sum_probs=127.9

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      .|.||||.|+..|+.+++++|++..+..++.+|.+|+||||+ |..|+                                
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~--------------------------------   47 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS--------------------------------   47 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTC--------------------------------
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCC--------------------------------
Confidence            368999999999999999999999666788999999999999 87772                                


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                                                                          .++++.+++.+.+.+.   +|..|.|||
T Consensus        48 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L   72 (156)
T 1bd8_A           48 ----------------------------------------------------TAIALELLKQGASPNV---QDTSGTSPV   72 (156)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred             ----------------------------------------------------HHHHHHHHHCCCCCCC---cCCCCCCHH
Confidence                                                                2344444554444433   577899999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~  260 (488)
                      |+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++. ++    ++.+|.+|+||||+|+..|+.
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~----~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           73 HDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD----LHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC----TTCCCTTSCCHHHHHHHSCCH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC----CCCcCCCCCCHHHHHHHcCcH
Confidence            9999999999999999998775 45699999999999999999999999988 54    789999999999999999987


Q ss_pred             CCcc
Q 011338          261 SQLD  264 (488)
Q Consensus       261 ~~v~  264 (488)
                      ++++
T Consensus       147 ~~v~  150 (156)
T 1bd8_A          147 DLVD  150 (156)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=8.2e-27  Score=234.09  Aligned_cols=245  Identities=9%  Similarity=-0.061  Sum_probs=179.0

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.+.+.+.   +|.+|.||||+|+..|+.+++++|++.+.   +..+.+|.||||+|+..|       +.++++
T Consensus        35 ~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t~L~~A~~~g-------~~~~v~  101 (364)
T 3ljn_A           35 EVRRLIETGVSPTI---QNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLAVMAN-------KTDLVV  101 (364)
T ss_dssp             HHHHHHHTTCCTTC---CCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBCHHHHHHHTT-------CHHHHH
T ss_pred             HHHHHHHcCCCccc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCCHHHHHHHcC-------CHHHHH
Confidence            47889988876554   78999999999999999999999999966   334468999999999999       577888


Q ss_pred             HHhhhhhh----hhhccccCCCC-CCCCCCCCCCCchhhhhHHHHHHH--HHHHHHHHhhccchhhhhHHHH--HHhh--
Q 011338           81 KWIYSFIY----IRSAYASNNIS-HGDIERPHQGPAEHKNFFTRAMTK--LLHMVWKSLNLFVPAIKHIYEV--KLAH--  149 (488)
Q Consensus        81 ~li~~~~~----v~~~~~~~~~~-~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~--~~~h--  149 (488)
                      .++.....    .+......... .........+..|.||||.|+..+  +.++++.|++.+.. ++..+..  ...|  
T Consensus       102 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A  180 (364)
T 3ljn_A          102 ALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRA  180 (364)
T ss_dssp             HHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHH
T ss_pred             HHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHH
Confidence            88876322    21111000000 000001113446889999999999  99999999998642 1111111  1112  


Q ss_pred             --HhHHHHHHHHhhhhcc-----cCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCC
Q 011338          150 --VQTQELLSCVCREIST-----QGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQ  222 (488)
Q Consensus       150 --~~~~~il~~l~~~~~~-----~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  222 (488)
                        .+..++++.|++.+..     .+.   +|..|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+.+|+
T Consensus       181 ~~~g~~~~v~~Ll~~g~~~~~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          181 MEFRNREALDLMMDTVPSKSSLRLDY---ANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             HHTTCHHHHHHHHHHCSCSSSCCTTC---CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCC
T ss_pred             HHcCCHHHHHHHHhcccccccccccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhCh
Confidence              2346788888887665     333   6788999999999999999999999998885 4669999999999999999


Q ss_pred             hhHHHHHHhcCCcc--------ccccccccCCCCcHHHHHHHhCCCCCc
Q 011338          223 EKIFNLIYTMGAKK--------NSVATNWDKAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       223 ~~iv~~Ll~~~~~~--------~~~~~~~D~~G~TpLhlA~~~~~~~~v  263 (488)
                      .+++++|++.+++.        .......|..|+|||++|+..|+.+.+
T Consensus       257 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v  305 (364)
T 3ljn_A          257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV  305 (364)
T ss_dssp             HHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHH
T ss_pred             HHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHH
Confidence            99999999987542        111223678899999999988764433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=1.5e-25  Score=200.07  Aligned_cols=143  Identities=15%  Similarity=0.167  Sum_probs=121.7

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.+++.+.   +|.+|+||||+|+..|+.++++.|++.+ .+++.+|.+|+||||+||..|+            
T Consensus        19 ~v~~Ll~~Gadvn~---~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~------------   82 (169)
T 4gpm_A           19 RVKDLIENGADVNA---SDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGH------------   82 (169)
T ss_dssp             HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred             HHHHHHHCCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhccCCCCHHHHHHHcCC------------
Confidence            47899999887665   7999999999999999999999999985 4578999999999999999982            


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                                                                                              .++++.|+
T Consensus        83 ------------------------------------------------------------------------~~~v~~Ll   90 (169)
T 4gpm_A           83 ------------------------------------------------------------------------KEVVKLLI   90 (169)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    23455555


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      +.+.+++.   +|.+|+||||+||+.|+.+++++|++.+++. ..+|.+|+||||+|+++|+.+++++|++.|++
T Consensus        91 ~~gadvn~---~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           91 SKGADVNA---KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HCcCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            55555544   6788999999999999999999999998885 45699999999999999999999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=2e-25  Score=197.10  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=127.3

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      ...||||.|+..|+.+++++|++.+. .++.+|.+|+||||+|+. |+                                
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~-~~--------------------------------   49 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GN--------------------------------   49 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCCS-SC--------------------------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCC-CccccCccCccHHHHHHc-Cc--------------------------------
Confidence            46899999999999999999998754 578899999999999998 72                                


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                                                                          .++++.|++.+.+.+.   +|..|.|||
T Consensus        50 ----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~L   74 (162)
T 1ihb_A           50 ----------------------------------------------------PEIARRLLLRGANPDL---KDRTGFAVI   74 (162)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred             ----------------------------------------------------HHHHHHHHHcCCCCCC---CCCCCCCHH
Confidence                                                                2344444444444333   577899999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCC
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPS  260 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~  260 (488)
                      |+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.+++   .++.+|.+|+||||+|+..|+.
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~~~~~~  150 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRN  150 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHHHcCCH
Confidence            9999999999999999998775 45699999999999999999999999999865   3689999999999999999987


Q ss_pred             CCccc
Q 011338          261 SQLDR  265 (488)
Q Consensus       261 ~~v~~  265 (488)
                      ++++.
T Consensus       151 ~~~~~  155 (162)
T 1ihb_A          151 EVVSL  155 (162)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=1.8e-25  Score=201.25  Aligned_cols=152  Identities=11%  Similarity=0.033  Sum_probs=128.1

Q ss_pred             CCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338           20 TNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS   99 (488)
Q Consensus        20 ~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~   99 (488)
                      .++.++||.||..|+.+++++|++.++.+++.+|.+|+||||+||..|+                               
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------------------------------   51 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------------------------------   51 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTC-------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCc-------------------------------
Confidence            4678999999999999999999999888899999999999999999982                               


Q ss_pred             CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchH
Q 011338          100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV  179 (488)
Q Consensus       100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tp  179 (488)
                                                                           .++++.|++.+.+.+.   +|..|.||
T Consensus        52 -----------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~g~t~   75 (179)
T 3f6q_A           52 -----------------------------------------------------SAVVEMLIMRGARINV---MNRGDDTP   75 (179)
T ss_dssp             -----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTCCCH
T ss_pred             -----------------------------------------------------HHHHHHHHHcCCCCCC---cCCCCCCH
Confidence                                                                 2344445554444433   57789999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCC
Q 011338          180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~  259 (488)
                      ||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+..++
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A           76 LHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL----VSICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SSBCCTTSCCGGGGSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cchhccCCCCcHHHHHHHHH
Confidence            99999999999999999998875 45699999999999999999999999999876    79999999999999998776


Q ss_pred             CCCc
Q 011338          260 SSQL  263 (488)
Q Consensus       260 ~~~v  263 (488)
                      .+++
T Consensus       151 ~~~~  154 (179)
T 3f6q_A          151 ELLR  154 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=6e-26  Score=224.80  Aligned_cols=215  Identities=10%  Similarity=-0.068  Sum_probs=139.3

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCc----------------------------------
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYR----------------------------------   46 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~----------------------------------   46 (488)
                      +|+||++++.+...   +|..|.|++|     |+.++++.||+++.                                  
T Consensus        34 lv~~ll~~ga~i~~---~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~  105 (327)
T 1sw6_A           34 LTSDFLSSPLKIMK---ALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF  105 (327)
T ss_dssp             CCCSTTTSSCCCEE---CBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CH
T ss_pred             hHHHHhhCCccccc---CCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH
Confidence            46788888776554   5677777776     77777777776641                                  


Q ss_pred             ---------------ccccc-ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCC
Q 011338           47 ---------------KLAYA-QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGP  110 (488)
Q Consensus        47 ---------------~~~~~-~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~  110 (488)
                                     .+++. +|.+|+||||+||..|       +.++++.|+....+++                ..+.
T Consensus       106 ~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g-------~~~~v~~Ll~~Gad~n----------------~~d~  162 (327)
T 1sw6_A          106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA-------NLELVKHLVKHGSNRL----------------YGDN  162 (327)
T ss_dssp             HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTT----------------BCCT
T ss_pred             HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCC----------------CcCC
Confidence                           22344 5666777777777776       3555666654433221                1344


Q ss_pred             chhhhhHHHHHHHH---HHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHH--
Q 011338          111 AEHKNFFTRAMTKL---LHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVK--  185 (488)
Q Consensus       111 ~~~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~--  185 (488)
                      .|.||||.|+..++   .++++.+                        ++.+..   ..+   .+|..|+||||+|++  
T Consensus       163 ~g~TpLh~A~~~g~~~~~~~~~~l------------------------l~~~~~---~~~---~~d~~g~tpLh~A~~~~  212 (327)
T 1sw6_A          163 MGESCLVKAVKSVNNYDSGTFEAL------------------------LDYLYP---CLI---LEDSMNRTILHHIIITS  212 (327)
T ss_dssp             TCCCHHHHHHHSSHHHHTTCHHHH------------------------HHHHGG---GGG---EECTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHhcccccHHHHHHH------------------------HHhhhc---ccc---CCCCCCCCHHHHHHHHc
Confidence            56677777765544   2222222                        222222   122   267789999999999  


Q ss_pred             --cCcHHHHHHHHHh--------------------CCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccc
Q 011338          186 --HGIVEFITEIMKH--------------------YPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNW  243 (488)
Q Consensus       186 --~G~~~~v~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~  243 (488)
                        .|+.++++.|++.                    +.+ .+.+|..|+||||.|+.      +++|++.+      +|.+
T Consensus       213 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~------~n~~  279 (327)
T 1sw6_A          213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM------LNAQ  279 (327)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT------TTCC
T ss_pred             cccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC------CCCC
Confidence              9999999999987                    444 45668999999999986      89999873      7899


Q ss_pred             cCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          244 DKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       244 D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      |.+|+||||+|+..|+.++++.|.                +   ...+.+.+|++|+||++++.+
T Consensus       280 d~~G~TpLh~A~~~g~~~~v~~Ll----------------~---~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          280 DSNGDTCLNIAARLGNISIVDALL----------------D---YGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHH----------------H---TTCCTTCCCTTSCCGGGGTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH----------------H---cCCCCcccCCCCCCHHHHHHh
Confidence            999999999999999976654321                0   234567889999999999754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.91  E-value=8.4e-25  Score=208.19  Aligned_cols=203  Identities=13%  Similarity=0.099  Sum_probs=150.0

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++++++...  ..|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|       ..++++
T Consensus        38 ~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v~  107 (253)
T 1yyh_A           38 VISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSAD-------AQGVFQ  107 (253)
T ss_dssp             ----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT-------CHHHHH
T ss_pred             HHHHHHHccCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence            46788888775432  36899999999999999999999999985 457899999999999999998       466677


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHH--HHHhh----HhHHH
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYE--VKLAH----VQTQE  154 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--~~~~h----~~~~~  154 (488)
                      .++....           .    .....+..|.||+|.|+..++.++++.+++.+.. ++..+.  ....|    .+..+
T Consensus       108 ~Ll~~~~-----------~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~  171 (253)
T 1yyh_A          108 ILIRNRA-----------T----DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVD  171 (253)
T ss_dssp             HHHHSTT-----------S----CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHH
T ss_pred             HHHHcCC-----------C----CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHH
Confidence            6664321           0    1112456789999999999999999999987632 111111  11112    23467


Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      +++.|++.+.+.+.   +|..|.||||+|++.|+.+++++|++++++. ..+|..|+||||+|+++|+.+++++|....
T Consensus       172 ~v~~Ll~~ga~~~~---~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          172 AAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHHHHcCCCCCC---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            88888888776654   6788999999999999999999999999885 456999999999999999999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=3e-24  Score=201.16  Aligned_cols=190  Identities=10%  Similarity=0.011  Sum_probs=145.2

Q ss_pred             ccccccc-CccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCcccc----ccccCCCChHHHHHhhCCCCCCCCchh
Q 011338            2 VRYLYRE-TPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLA----YAQDNDGDTAIDMLAQKPSAFPSGTQL   76 (488)
Q Consensus         2 v~~L~~~-~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~----~~~d~~G~TpLh~Aa~~g~~~~s~~~l   76 (488)
                      |++|+++ +.+.+.   +|.+|+||||+|+..|+.+++++|++.+++..    +.+|.+|.||||+|+..|       ..
T Consensus        19 v~~Ll~~~g~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------~~   88 (232)
T 2rfa_A           19 LSKLLKFEGCEVHQ---RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ-------NV   88 (232)
T ss_dssp             HHHHHTTTCSCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT-------CH
T ss_pred             HHHHHHhcCCCccc---CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC-------CH
Confidence            5777776 544433   78999999999999999999999999977643    567789999999999999       46


Q ss_pred             hHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHH
Q 011338           77 AFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELL  156 (488)
Q Consensus        77 ~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il  156 (488)
                      ++++.++....++.....   ...........+..|.||+|.|+..++.++++.|++.+                     
T Consensus        89 ~~v~~Ll~~g~~~~~~~~---~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---------------------  144 (232)
T 2rfa_A           89 NLVRALLARGASVSARAT---GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG---------------------  144 (232)
T ss_dssp             HHHHHHHHTTCCTTCCCC---SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT---------------------
T ss_pred             HHHHHHHhCCCCCCcccC---CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC---------------------
Confidence            778888776544322110   00011111223447899999999888777777666544                     


Q ss_pred             HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHH----HHHHHhCCCce-----eeccCCCccHHHHHHhcCChhHHH
Q 011338          157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFI----TEIMKHYPDII-----WCYDDYNRHIFSYATLQRQEKIFN  227 (488)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv~  227 (488)
                             .+.+.   +|..|+||||+|+..|+.+++    ++|++.+++..     ..+|..|+||||+|+++|+.++++
T Consensus       145 -------a~~~~---~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          145 -------ADIRA---QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             -------CCTTC---CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             -------CCCCC---CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence                   22222   577899999999999999988    99999988653     467999999999999999999999


Q ss_pred             HHHhcCCc
Q 011338          228 LIYTMGAK  235 (488)
Q Consensus       228 ~Ll~~~~~  235 (488)
                      +|++++..
T Consensus       215 ~Ll~~g~~  222 (232)
T 2rfa_A          215 HLMQKRKH  222 (232)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcCcc
Confidence            99998743

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.91  E-value=6e-25  Score=206.71  Aligned_cols=205  Identities=11%  Similarity=0.008  Sum_probs=154.6

Q ss_pred             CcccccccCccc-cCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHH
Q 011338            1 MVRYLYRETPIA-ELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFW   79 (488)
Q Consensus         1 mv~~L~~~~~~~-~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~   79 (488)
                      ++++|+...... .....+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|       ....+
T Consensus        23 ~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~-------~~~~v   94 (236)
T 1ikn_D           23 LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQG-------CLASV   94 (236)
T ss_dssp             SSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCHHHHHHHHT-------CHHHH
T ss_pred             HHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC-------CHHHH
Confidence            467888876532 112347889999999999999999999999884 557889999999999999999       46677


Q ss_pred             HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338           80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV  159 (488)
Q Consensus        80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l  159 (488)
                      +.++..+...          .........+..|.||||.|+..++.++++.|++.+                        
T Consensus        95 ~~Ll~~~~~~----------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------------------  140 (236)
T 1ikn_D           95 GVLTQSCTTP----------HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG------------------------  140 (236)
T ss_dssp             HHHHHSTTTT----------SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT------------------------
T ss_pred             HHHHhcccch----------hHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC------------------------
Confidence            7777554321          000011224557899999999888777776665544                        


Q ss_pred             hhhhcccCchhhhhc-CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccc
Q 011338          160 CREISTQGESQFEKV-GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNS  238 (488)
Q Consensus       160 ~~~~~~~~~~~~~~~-~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  238 (488)
                          .+.+.   ++. .|.||||+|+..|+.+++++|++.+.+. ..+|..|+||||+|+.+|+.+++++|++.|++.  
T Consensus       141 ----~~~~~---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~--  210 (236)
T 1ikn_D          141 ----ADVNA---QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN--  210 (236)
T ss_dssp             ----CCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG--
T ss_pred             ----CCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHcchhh--
Confidence                23222   444 7999999999999999999999998875 466999999999999999999999999999752  


Q ss_pred             ccccccCCCCcHHHHHHHh
Q 011338          239 VATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       239 ~~~~~D~~G~TpLhlA~~~  257 (488)
                      ....++.+|.||.+.+...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          211 LQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             GSSCCCCCTTTCCCCC---
T ss_pred             hhcCCccchHHHHhhhccc
Confidence            3467899999998876554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.91  E-value=6.3e-25  Score=213.13  Aligned_cols=192  Identities=12%  Similarity=0.086  Sum_probs=153.6

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++.+.+.+.     .+|+||||+|+..|+.+++++|++.+. .++.+|..|+||||+|+..|       ..++++
T Consensus        46 ~v~~Ll~~g~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~L~~A~~~g-------~~~~v~  112 (285)
T 3kea_A           46 LVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSGL-DDSQFDDKGNTALYYAVDSG-------NMQTVK  112 (285)
T ss_dssp             HHHHHHHTTGGGSC-----CTTCCHHHHHTTSSSCHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred             HHHHHHhCCCCCCC-----CCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCcHHHHHHHcC-------CHHHHH
Confidence            46788888776543     259999999999999999999999854 57889999999999999999       577888


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCch-hhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHH
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAE-HKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCV  159 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l  159 (488)
                      .++....++..                .+..| .||+|.|+..++.++++.+++.+.                       
T Consensus       113 ~Ll~~ga~~~~----------------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~-----------------------  153 (285)
T 3kea_A          113 LFVKKNWRLMF----------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-----------------------  153 (285)
T ss_dssp             HHHHHCGGGGG----------------CSSSGGGSHHHHHHHTTCHHHHHHHHTTSC-----------------------
T ss_pred             HHHhcCCCCCc----------------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----------------------
Confidence            88876554421                34456 899999999888877777776552                       


Q ss_pred             hhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccH-HHHHHhcCChhHHHHHHhcCCcccc
Q 011338          160 CREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHI-FSYATLQRQEKIFNLIYTMGAKKNS  238 (488)
Q Consensus       160 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~  238 (488)
                           ...    ....|.||||+|+..|+.+++++|++++++. +.+|..|+|| ||+|+.+|+.+++++|++.|++   
T Consensus       154 -----~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad---  220 (285)
T 3kea_A          154 -----STF----DLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN---  220 (285)
T ss_dssp             -----TTC----CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC---
T ss_pred             -----ccc----cccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC---
Confidence                 111    1126899999999999999999999998774 4569999998 9999999999999999999987   


Q ss_pred             ccccccCCCCcHHHHHHHhCCCCCccc
Q 011338          239 VATNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       239 ~~~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                       ++.+|.       .|+..|+.++++.
T Consensus       221 -~~~~~~-------~a~~~~~~~iv~~  239 (285)
T 3kea_A          221 -IYSANL-------ENVLLDDAEIAKM  239 (285)
T ss_dssp             -STTTTG-------GGGTTTCHHHHHH
T ss_pred             -CCCCCh-------hhhhcCCHHHHHH
Confidence             677773       5566777665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.90  E-value=1.5e-23  Score=191.84  Aligned_cols=175  Identities=13%  Similarity=0.074  Sum_probs=139.0

Q ss_pred             cccccccCc-cccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            2 VRYLYRETP-IAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         2 v~~L~~~~~-~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +++|+.+++ +.+   .+|.+|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|       ..++++
T Consensus        21 v~~ll~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~-------~~~~~~   89 (201)
T 3hra_A           21 VKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYAGAQG-------RTEILA   89 (201)
T ss_dssp             HHHHHTCTTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT-------CHHHHH
T ss_pred             HHHHHHcCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC-------CHHHHH
Confidence            456666665 322   37889999999999999999999999984 457889999999999999999       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .++...-               ......+..|.||+|.|+..++.++++.+++.+..                       
T Consensus        90 ~Ll~~~~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------  131 (201)
T 3hra_A           90 YMLKHAT---------------PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-----------------------  131 (201)
T ss_dssp             HHHHHSC---------------CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC-----------------------
T ss_pred             HHHhccC---------------cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------
Confidence            7663321               01112455788999999988888777777665421                       


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCc-----HHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGI-----VEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                          ..+   .+|..|.||||+|+..|+     .+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|
T Consensus       132 ----~~~---~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          132 ----DID---FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             ----CTT---CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             ----CcC---CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                122   257789999999999998     99999999998875 456999999999999999999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=196.97  Aligned_cols=205  Identities=8%  Similarity=-0.057  Sum_probs=155.6

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++.+.+...   +|.+|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|       ..++++
T Consensus        24 ~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~-------~~~~v~   93 (240)
T 3eu9_A           24 RCRELVEAGYDVRQ---PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG-------HLSMVV   93 (240)
T ss_dssp             HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT-------CHHHHH
T ss_pred             HHHHHHHcCCCcCC---CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC-------CHHHHH
Confidence            36788888765443   68899999999999999999999999987766666777999999999998       466777


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHhhHhH-----HH
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLAHVQT-----QE  154 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~h~~~-----~~  154 (488)
                      .++.....+                ...+..+.+|+|.|+..++.++++.+++.+... ..........|..+     .+
T Consensus        94 ~Ll~~g~~~----------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           94 QLMKYGADP----------------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHTTCCT----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             HHHHcCCCC----------------cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence            776543221                123456889999999999999999999876321 11111111112211     34


Q ss_pred             HHHHHhhhhcccCchhhhhc-CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          155 LLSCVCREISTQGESQFEKV-GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~-~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      +++.+.+.+...+.   .+. .|.||||+|+..|+.+++++|++++++. ..+|..|+||||+|+++|+.+++++|++.+
T Consensus       158 ~~~~L~~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          158 PTRLLLTFNVSVNL---GDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             THHHHHHTTCCTTC---CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCcch---hhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            55566665555443   343 7999999999999999999999998875 456999999999999999999999999987


Q ss_pred             Cc
Q 011338          234 AK  235 (488)
Q Consensus       234 ~~  235 (488)
                      ..
T Consensus       234 ~~  235 (240)
T 3eu9_A          234 QA  235 (240)
T ss_dssp             --
T ss_pred             hc
Confidence            54

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.89  E-value=1.2e-23  Score=202.38  Aligned_cols=193  Identities=12%  Similarity=0.012  Sum_probs=134.9

Q ss_pred             CCCCchhHHHHHHHc---CCccHHHHHHHhCccc------ccc----ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhh
Q 011338           18 KGTNGAMLLTSCIID---DIFDIPLDLLQRYRKL------AYA----QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIY   84 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~---g~~div~~LL~~~~~~------~~~----~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~   84 (488)
                      +|.+|+||||+|+..   |+.+++++|++.+.+.      ++.    +|.+|+||||+|+..|       ..++++.|+.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g-------~~~~v~~Ll~  122 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-------NMTLVTLLVE  122 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTT-------CHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcC-------CHHHHHHHHH
Confidence            588999999999987   9999999999985431      222    5678999999999999       5778888887


Q ss_pred             hhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhc
Q 011338           85 SFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREIS  164 (488)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~  164 (488)
                      ...+++.......  ............|.||||.|+..++.++++.|++.+.                         .+.
T Consensus       123 ~ga~~~~~~~~~~--~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-------------------------~ga  175 (273)
T 2pnn_A          123 NGADVQAAANGDF--FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-------------------------QPA  175 (273)
T ss_dssp             TTCCTTCCBCSGG--GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-------------------------CCC
T ss_pred             CCCCcCccccccc--cccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-------------------------CCC
Confidence            6544322110000  0000011123368999999999888877777766210                         122


Q ss_pred             ccCchhhhhcCcchHHHHHHHcCc---------HHHHHHHHHhCCCce------eeccCCCccHHHHHHhcCChhHHHHH
Q 011338          165 TQGESQFEKVGIKKVVFIAVKHGI---------VEFITEIMKHYPDII------WCYDDYNRHIFSYATLQRQEKIFNLI  229 (488)
Q Consensus       165 ~~~~~~~~~~~g~tpLh~Aa~~G~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~L  229 (488)
                      +.+.   +|.+|+||||+|+..|+         .+++++|++.+++..      ..+|.+|+||||+|+++|+.+++++|
T Consensus       176 d~~~---~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  252 (273)
T 2pnn_A          176 DISA---RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI  252 (273)
T ss_dssp             CTTC---CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             Ccee---eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence            2222   67789999999999998         899999999987754      24799999999999999999999999


Q ss_pred             HhcCCccccccccccCCCCcH
Q 011338          230 YTMGAKKNSVATNWDKAHNNI  250 (488)
Q Consensus       230 l~~~~~~~~~~~~~D~~G~Tp  250 (488)
                      ++.|+..   ....+..+.+|
T Consensus       253 l~~ga~d---p~~~~~~~~~~  270 (273)
T 2pnn_A          253 LQREIHE---PECRHAAAHHH  270 (273)
T ss_dssp             HHHHTC---------------
T ss_pred             HHCCCCC---chhhhhhhhhc
Confidence            9998731   34444555544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=2.4e-23  Score=185.77  Aligned_cols=154  Identities=10%  Similarity=-0.022  Sum_probs=121.2

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|+.+++...  ..+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+             
T Consensus        18 v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-------------   81 (172)
T 3v30_A           18 LKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGGY-------------   81 (172)
T ss_dssp             HHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTC-------------
T ss_pred             HHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCCC-------------
Confidence            567777776421  237889999999999999999999999985 4578899999999999999982             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        82 -----------------------------------------------------------------------~~~v~~Ll~   90 (172)
T 3v30_A           82 -----------------------------------------------------------------------TDIVGLLLE   90 (172)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHT
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   133444444


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                      .+...+.   +|..|.||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|+.+|+.+++++|++.+.+    +.
T Consensus        91 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~----~~  162 (172)
T 3v30_A           91 RDVDINI---YDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK----LF  162 (172)
T ss_dssp             TTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----HS
T ss_pred             cCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH----Hh
Confidence            4444433   5778999999999999999999999998875 45699999999999999999999999999765    57


Q ss_pred             cccCCCCcH
Q 011338          242 NWDKAHNNI  250 (488)
Q Consensus       242 ~~D~~G~Tp  250 (488)
                      .++..|.||
T Consensus       163 ~~~~~~~~p  171 (172)
T 3v30_A          163 QSNLVPADP  171 (172)
T ss_dssp             CC-------
T ss_pred             cccCCCCCC
Confidence            788888887

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=2.3e-23  Score=183.86  Aligned_cols=143  Identities=16%  Similarity=0.107  Sum_probs=119.2

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++++.+.+.   +|.+|+||||+|+. |+.+++++|++.+ ..++.+|.+|.||||+|+..|+            
T Consensus        20 ~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------   82 (162)
T 1ihb_A           20 QLTSLLQNNVNVNA---QNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGF------------   82 (162)
T ss_dssp             HHHHHTTSCCCTTC---CCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC------------
T ss_pred             HHHHHHhCCCCccc---cCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCC------------
Confidence            36788887765543   78899999999999 9999999999984 4578899999999999999882            


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                                                                                              .++++.|+
T Consensus        83 ------------------------------------------------------------------------~~~v~~Ll   90 (162)
T 1ihb_A           83 ------------------------------------------------------------------------LDTLQTLL   90 (162)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    23444444


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      +.+.+.+.   +|.+|.||||+|++.|+.+++++|++.+++.....|..|+||||+|+.+|+.+++++|+++|++
T Consensus        91 ~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           91 EFQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HcCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            44444333   5778999999999999999999999999986677899999999999999999999999999863

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.89  E-value=2e-23  Score=198.68  Aligned_cols=195  Identities=13%  Similarity=0.028  Sum_probs=139.0

Q ss_pred             ccccccCccccCC-CCCCCCchhHHHHHHHc---CCccHHHHHHHhCccccc----------cccCCCChHHHHHhhCCC
Q 011338            3 RYLYRETPIAELD-PDKGTNGAMLLTSCIID---DIFDIPLDLLQRYRKLAY----------AQDNDGDTAIDMLAQKPS   68 (488)
Q Consensus         3 ~~L~~~~~~~~l~-~~~d~~G~T~LH~A~~~---g~~div~~LL~~~~~~~~----------~~d~~G~TpLh~Aa~~g~   68 (488)
                      ++|++.+.+.... ..+|.+|+||||+|+..   |+.+++++|++.+.+...          .+|.+|+||||+|+..| 
T Consensus        23 ~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-  101 (256)
T 2etb_A           23 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR-  101 (256)
T ss_dssp             HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT-
T ss_pred             HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC-
Confidence            4455555433210 02688999999999999   999999999998654321          23477999999999999 


Q ss_pred             CCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHh
Q 011338           69 AFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLA  148 (488)
Q Consensus        69 ~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  148 (488)
                            ..++++.|+....+++..+...   .........+..|.||||.|+..++.++++.|++.+.            
T Consensus       102 ------~~~~v~~Ll~~ga~~~~~~~~~---~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~------------  160 (256)
T 2etb_A          102 ------SLQCVKLLVENGADVHLRACGR---FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH------------  160 (256)
T ss_dssp             ------CHHHHHHHHHTTCCTTCCCCSG---GGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS------------
T ss_pred             ------CHHHHHHHHHcCCCCCcccccc---cccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc------------
Confidence                  4678888876654332111000   0000000112248999999998888877777766210            


Q ss_pred             hHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHH--cCcHH-------HHHHHHHhCCCce------eeccCCCccH
Q 011338          149 HVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVK--HGIVE-------FITEIMKHYPDII------WCYDDYNRHI  213 (488)
Q Consensus       149 h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~--~G~~~-------~v~~Ll~~~~~~~------~~~d~~g~t~  213 (488)
                                   .+.+.+.   +|.+|+||||+|+.  .|+.+       ++++|++.+++..      +.+|.+|+||
T Consensus       161 -------------~ga~~n~---~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp  224 (256)
T 2etb_A          161 -------------QPASLEA---TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP  224 (256)
T ss_dssp             -------------CCCCTTC---CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH
T ss_pred             -------------cCCCcCc---cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH
Confidence                         2222222   67789999999999  88988       9999999987752      5679999999


Q ss_pred             HHHHHhcCChhHHHHHHhcCCc
Q 011338          214 FSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       214 Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      ||+|+.+|+.+++++|+++|..
T Consensus       225 L~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          225 LKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhCCCC
Confidence            9999999999999999998753

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=1.8e-23  Score=201.93  Aligned_cols=178  Identities=8%  Similarity=-0.011  Sum_probs=142.7

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCcc-ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRK-LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~-~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      +.+++|.|+..|+.+.++.+++...+ .++.+|.+|+||||+||..|+                                
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~--------------------------------  123 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN--------------------------------  123 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC--------------------------------
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC--------------------------------
Confidence            56788999999999999999877433 478899999999999999882                                


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhc-ccCchhhhhcCcchH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREIS-TQGESQFEKVGIKKV  179 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~-~~~~~~~~~~~g~tp  179 (488)
                                                                          .++++.|++.+. ..+.   ++..|.||
T Consensus       124 ----------------------------------------------------~~~v~~Ll~~g~~~~~~---~~~~g~tp  148 (276)
T 4hbd_A          124 ----------------------------------------------------FPVVQQLLDSGVCKVDK---QNRAGYSP  148 (276)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTSCCCTTC---CCTTSCCH
T ss_pred             ----------------------------------------------------HHHHHHHHHCCCCcCCC---CCCCCCCH
Confidence                                                                133444444443 2222   57789999


Q ss_pred             HHHHH-----HcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          180 VFIAV-----KHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       180 Lh~Aa-----~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      ||+|+     ..|+.++++.|++.+... ...|..|+||||+|+.+|+.+++++|++.|++    +|.+|.+|+||||+|
T Consensus       149 L~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          149 IMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD----VNVQDDDGSTALMCA  223 (276)
T ss_dssp             HHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHH
Confidence            99999     779999999999998664 45688999999999999999999999999987    799999999999999


Q ss_pred             HHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          255 AFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       255 ~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      +..|+.++++.+..                  ..+.+.+.+|++|+||++++.+.
T Consensus       224 ~~~g~~~iv~~Ll~------------------~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          224 CEHGHKEIAGLLLA------------------VPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHTCHHHHHHHHT------------------STTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHh------------------cCCCCCcCcCCCCCCHHHHHHHc
Confidence            99998665532210                  02345678899999999998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=1.6e-23  Score=197.82  Aligned_cols=154  Identities=8%  Similarity=-0.032  Sum_probs=99.8

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI   98 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~   98 (488)
                      +..|.||||.|++.|+.++++.||+++.+ ++. +..|.||||.|+..|+                              
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~------------------------------   49 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGE------------------------------   49 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTC------------------------------
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCC------------------------------
Confidence            34699999999999999999999998554 443 4678999999999882                              


Q ss_pred             CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcch
Q 011338           99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKK  178 (488)
Q Consensus        99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~t  178 (488)
                                                                            .++++.|++.+.+.+.   +|..|+|
T Consensus        50 ------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g~t   72 (239)
T 1ycs_B           50 ------------------------------------------------------FDLVQRIIYEVDDPSL---PNDEGIT   72 (239)
T ss_dssp             ------------------------------------------------------HHHHHHHTSTTSSCCC---CCTTSCC
T ss_pred             ------------------------------------------------------HHHHHHHHHcCCCCCC---cCCCCCC
Confidence                                                                  2344555555544433   5778999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC-cHHHHH--H
Q 011338          179 VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN-NILHQA--A  255 (488)
Q Consensus       179 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~-TpLhlA--~  255 (488)
                      |||+||..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++    ++.+|.+|. ||||+|  +
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~~~t~l~~a~~~  147 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA----VFAMTYSDMQTAADKCEEM  147 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cceecCCCCcchHHHHHHh
Confidence            999999999999999999998875 45699999999999999999999999999887    788888877 999999  7


Q ss_pred             HhCCCCCcccc
Q 011338          256 FLAPSSQLDRV  266 (488)
Q Consensus       256 ~~~~~~~v~~l  266 (488)
                      ..|+.++++.|
T Consensus       148 ~~g~~~~~~~L  158 (239)
T 1ycs_B          148 EEGYTQCSQFL  158 (239)
T ss_dssp             STTCCCHHHHH
T ss_pred             hhccHHHHHHH
Confidence            78888877654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=3.7e-23  Score=181.85  Aligned_cols=144  Identities=10%  Similarity=0.047  Sum_probs=106.1

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      ..+..|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+ .|+                            
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~----------------------------   56 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGS----------------------------   56 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTC----------------------------
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCC----------------------------
Confidence            36788999999999999999999999984 558899999999999985 551                            


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                                                                              .++++.|++.+.+.+.   +|..|
T Consensus        57 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g   77 (156)
T 1bi7_B           57 --------------------------------------------------------ARVAELLLLHGAEPNC---ADPAT   77 (156)
T ss_dssp             --------------------------------------------------------HHHHHHHHTTTCCCCC---CCTTT
T ss_pred             --------------------------------------------------------HHHHHHHHHcCCCCCC---cCCCC
Confidence                                                                    2345555555544443   67789


Q ss_pred             ch-HHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          177 KK-VVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       177 ~t-pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      .| |||+|+..|+.+++++|++++++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|..|+||.+-+
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG----TRGSNHARIDAAEGP  151 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC----CCccCcCcCcccccC
Confidence            98 999999999999999999998875 45699999999999999999999999999987    799999999998844

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.88  E-value=3.4e-23  Score=197.50  Aligned_cols=181  Identities=10%  Similarity=-0.033  Sum_probs=133.9

Q ss_pred             CCCCchhHHHHHH---HcCCccHHHHHHHhCcc----------ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhh
Q 011338           18 KGTNGAMLLTSCI---IDDIFDIPLDLLQRYRK----------LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIY   84 (488)
Q Consensus        18 ~d~~G~T~LH~A~---~~g~~div~~LL~~~~~----------~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~   84 (488)
                      +|.+|.||||+|+   ..|+.+++++|++.+.+          ..+..|.+|+||||+||..|       +.++++.|+.
T Consensus        42 ~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~  114 (260)
T 3jxi_A           42 EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR-------CKHYVELLVE  114 (260)
T ss_dssp             CTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTT-------CHHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcC-------CHHHHHHHHh
Confidence            4578999999999   77999999999998542          23445668999999999999       5778888887


Q ss_pred             hhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhc
Q 011338           85 SFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREIS  164 (488)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~  164 (488)
                      ...+++..+.....  ...+.......|.||||.|+..++.++++.|++.+.                         .+.
T Consensus       115 ~ga~~~~~~~~~~~--~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-------------------------~ga  167 (260)
T 3jxi_A          115 KGADVHAQARGRFF--QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH-------------------------KQA  167 (260)
T ss_dssp             TTCCTTCCCEECCC--SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS-------------------------CCC
T ss_pred             CCCCcCcccccccc--CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-------------------------cCC
Confidence            65544321110000  000011122579999999999888877777766210                         122


Q ss_pred             ccCchhhhhcCcchHHHHHHHcCc---------HHHHHHHHHhCCCce------eeccCCCccHHHHHHhcCChhHHHHH
Q 011338          165 TQGESQFEKVGIKKVVFIAVKHGI---------VEFITEIMKHYPDII------WCYDDYNRHIFSYATLQRQEKIFNLI  229 (488)
Q Consensus       165 ~~~~~~~~~~~g~tpLh~Aa~~G~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~L  229 (488)
                      +.+.   +|..|+||||+|++.|+         .++++.|++.+++..      ..+|.+|+||||+|+.+|+.+++++|
T Consensus       168 ~~~~---~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          168 DLRR---QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             CTTC---CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcc---cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence            2222   67789999999999888         799999999987652      45799999999999999999999999


Q ss_pred             HhcCCc
Q 011338          230 YTMGAK  235 (488)
Q Consensus       230 l~~~~~  235 (488)
                      +++|..
T Consensus       245 l~~g~~  250 (260)
T 3jxi_A          245 IRREIA  250 (260)
T ss_dssp             HHHHHH
T ss_pred             HHhCCC
Confidence            998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=2e-22  Score=172.79  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=108.8

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+. |+                            
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~----------------------------   56 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GS----------------------------   56 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SC----------------------------
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CC----------------------------
Confidence            37889999999999999999999999984 5578999999999999999 82                            


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC-
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG-  175 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~-  175 (488)
                                                                              .++++.|++.+.+.+.   +|.. 
T Consensus        57 --------------------------------------------------------~~~v~~Ll~~g~~~~~---~~~~~   77 (136)
T 1d9s_A           57 --------------------------------------------------------AQVAELLLLHGAEPNC---ADPAT   77 (136)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHTCCSSC---CBTTT
T ss_pred             --------------------------------------------------------HHHHHHHHHCCCCCCC---cCCCC
Confidence                                                                    2344445555444443   5677 


Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      |.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+.+++.+++++|++.|+
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            899999999999999999999998875 4669999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=2.8e-23  Score=188.45  Aligned_cols=152  Identities=10%  Similarity=0.022  Sum_probs=126.3

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCcccccccc-CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQD-NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      +.++||.|++.|+.+.++.+++.++   +.+| ..|+||||+|+..|+.                               
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~-------------------------------   51 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNND-------------------------------   51 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCH-------------------------------
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCc-------------------------------
Confidence            5689999999999999999998754   3445 7899999999998820                               


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                                                                       ....++++.|++.+.+++.   +|.+|+|||
T Consensus        52 -------------------------------------------------~~~~~iv~~Ll~~Gadvn~---~d~~g~TpL   79 (186)
T 3t8k_A           52 -------------------------------------------------EARYKISMFLINKGADIKS---RTKEGTTLF   79 (186)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHHTTCCSSC---CCTTCCCTH
T ss_pred             -------------------------------------------------chHHHHHHHHHHCCCCCCC---CCCCCCcHH
Confidence                                                             0123567777777777665   678899999


Q ss_pred             HHHHHcCc------HHHHHHHHHhCCCceeeccCCCc-cHHHHHHhcCC-----hhHHHHHHh-cCCccccccccccCCC
Q 011338          181 FIAVKHGI------VEFITEIMKHYPDIIWCYDDYNR-HIFSYATLQRQ-----EKIFNLIYT-MGAKKNSVATNWDKAH  247 (488)
Q Consensus       181 h~Aa~~G~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~iv~~Ll~-~~~~~~~~~~~~D~~G  247 (488)
                      |+|+..|+      .+++++|++++.+. +.+|..|+ ||||+|+..+.     .+++++|++ .|++    ++.+|.+|
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----~~~~d~~G  154 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----LLIKDKWG  154 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----TTCCCTTS
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----CcccCCCC
Confidence            99999997      68999999999885 45699999 99999999554     469999999 8887    79999999


Q ss_pred             CcHHHHHHHhCCCCCcc
Q 011338          248 NNILHQAAFLAPSSQLD  264 (488)
Q Consensus       248 ~TpLhlA~~~~~~~~v~  264 (488)
                      +||||+|++.|+.++++
T Consensus       155 ~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALK  171 (186)
T ss_dssp             CCHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHH
Confidence            99999999999876654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.87  E-value=3.3e-22  Score=178.11  Aligned_cols=141  Identities=16%  Similarity=0.196  Sum_probs=117.7

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++.+.+.   +|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+            
T Consensus        29 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~------------   92 (169)
T 2y1l_E           29 EVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGH------------   92 (169)
T ss_dssp             HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred             HHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCC------------
Confidence            46889988876554   7889999999999999999999999985 4578899999999999999982            


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                                                                                              .++++.|+
T Consensus        93 ------------------------------------------------------------------------~~~~~~Ll  100 (169)
T 2y1l_E           93 ------------------------------------------------------------------------LEIVEVLL  100 (169)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    13344444


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      +.+.+.+.   +|..|.||||+|+..|+.+++++|++++.+. ..+|..|+||||+|+.+|+.+++++|++.|
T Consensus       101 ~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          101 KNGADVNA---NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            44444433   5778999999999999999999999998875 456999999999999999999999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.86  E-value=1.3e-22  Score=191.40  Aligned_cols=165  Identities=9%  Similarity=0.001  Sum_probs=122.1

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      ++.|++++.+...    +..|.||||.|+..|+.+++++|++.++ +++.+|.+|+||||+||..|+             
T Consensus        21 ~~~ll~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~-------------   82 (239)
T 1ycs_B           21 GSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGH-------------   82 (239)
T ss_dssp             --------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTC-------------
T ss_pred             HHHHhccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCC-------------
Confidence            6778888876654    5788999999999999999999998865 689999999999999999882             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        83 -----------------------------------------------------------------------~~~v~~Ll~   91 (239)
T 1ycs_B           83 -----------------------------------------------------------------------TEIVKFLVQ   91 (239)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   234445555


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCc-cHHHHH--HhcCChhHHHHHHhcCCcccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNR-HIFSYA--TLQRQEKIFNLIYTMGAKKNS  238 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~iv~~Ll~~~~~~~~  238 (488)
                      .+.+.+.   +|.+|+||||+|+..|+.+++++|++++++.... |..|. ||||+|  +.+|+.+++++|++.+++...
T Consensus        92 ~ga~~~~---~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B           92 FGVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             HTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred             cCCCCCc---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence            5544443   6778999999999999999999999999886544 65555 999999  889999999999998765211


Q ss_pred             -----ccccccCCCCcHHHHHHHhCC
Q 011338          239 -----VATNWDKAHNNILHQAAFLAP  259 (488)
Q Consensus       239 -----~~~~~D~~G~TpLhlA~~~~~  259 (488)
                           .....|..|.||++++...|.
T Consensus       168 ~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          168 MNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             TGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cccceEEEEeccCCCCCCcccccCCC
Confidence                 122338889999999998886

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.85  E-value=9.1e-22  Score=178.89  Aligned_cols=141  Identities=14%  Similarity=0.114  Sum_probs=117.7

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++.+.+...   +|.+|+||||+|+..|+.+++++|++.+. .++.+|.+|.||||+|+..|+            
T Consensus        50 ~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~------------  113 (192)
T 2rfm_A           50 AIDKLVENFDKLED---KDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGY------------  113 (192)
T ss_dssp             GHHHHHHHHCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTC------------
T ss_pred             HHHHHHHhcccccc---ccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCC------------
Confidence            46788887765443   78899999999999999999999999954 578899999999999998882            


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                                                                                              .++++.|+
T Consensus       114 ------------------------------------------------------------------------~~~v~~Ll  121 (192)
T 2rfm_A          114 ------------------------------------------------------------------------SEMSYFLL  121 (192)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    23444445


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      +.+.+.+.   +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+.+|+.+++++|++.+
T Consensus       122 ~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          122 EHGANVND---RNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HTTCCSSC---CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            54444443   6778999999999999999999999998875 456999999999999999999999999864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=1.1e-21  Score=171.57  Aligned_cols=135  Identities=14%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|++++++..    .|..|.||||+|+..|+.+++++|++.+. .++.+|.+|+||||+|+..|+             
T Consensus        18 v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~-------------   79 (153)
T 1awc_B           18 VRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGH-------------   79 (153)
T ss_dssp             HHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTC-------------
T ss_pred             HHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCh-------------
Confidence            678888876432    58899999999999999999999999854 578899999999999998882             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        80 -----------------------------------------------------------------------~~~v~~Ll~   88 (153)
T 1awc_B           80 -----------------------------------------------------------------------ANIVEVLLK   88 (153)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHT
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   134444444


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHH
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLI  229 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  229 (488)
                      .+.+.+.   +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+.+|+.+++++|
T Consensus        89 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           89 HGADVNA---KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            4444433   5778999999999999999999999998875 45699999999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=1.1e-22  Score=204.53  Aligned_cols=158  Identities=11%  Similarity=-0.050  Sum_probs=109.2

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCcc--ccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRK--LAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      ++.+++||||+|++.|+.+++++|++.+..  ..+..|..|.||||+||+.|       +.++++.|+....+.....  
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G-------~~eiv~~Ll~~gad~~~~~--  158 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG-------HLHVLNRLCELAPTEIMAM--  158 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT-------CHHHHHHHHHSCTTTHHHH--
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC-------CHHHHHHHHhCCCCccccc--
Confidence            456788999999999999999999998642  12245567899999999999       5778888876542110000  


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG  175 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~  175 (488)
                                  ......||||.|+..|+.++++.|++.+.....                             ...|.+
T Consensus       159 ------------i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~-----------------------------~~~d~~  197 (376)
T 2aja_A          159 ------------IQAENYHAFRLAAENGHLHVLNRLCELAPTEAT-----------------------------AMIQAE  197 (376)
T ss_dssp             ------------HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH-----------------------------HHHHHH
T ss_pred             ------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCccch-----------------------------hccCCC
Confidence                        011128999999999999999988887632110                             013344


Q ss_pred             cchHHHHHH-HcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          176 IKKVVFIAV-KHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       176 g~tpLh~Aa-~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      |.||||+|| ..|+.+++++|++.+.        .|+||||+|+.+|+.+++++|++.|
T Consensus       198 g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~g  248 (376)
T 2aja_A          198 NYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHV  248 (376)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcC
Confidence            677777777 7777777777776431        2677777777777777777777654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.85  E-value=1.7e-21  Score=172.92  Aligned_cols=141  Identities=11%  Similarity=0.010  Sum_probs=117.2

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|++.+.+.+   .+|.+|.||||+|+..|+.+++++|++.+ ..++.+|..|.||||+|+..|+             
T Consensus        19 v~~ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-------------   81 (167)
T 3v31_A           19 LATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSKGY-------------   81 (167)
T ss_dssp             HHHHHHHSSCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTC-------------
T ss_pred             HHHHHHcCCCcC---CCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCC-------------
Confidence            677887776543   37889999999999999999999999984 5578899999999999999882             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        82 -----------------------------------------------------------------------~~~v~~Ll~   90 (167)
T 3v31_A           82 -----------------------------------------------------------------------TDIVKMLLD   90 (167)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   133444444


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      .+.+.+.   +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++++.
T Consensus        91 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           91 CGVDVNE---YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCCc---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            4444433   5778999999999999999999999998875 4569999999999999999999999998854

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=3.2e-21  Score=165.33  Aligned_cols=127  Identities=14%  Similarity=0.118  Sum_probs=104.2

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      ....|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+                             
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-----------------------------   59 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGH-----------------------------   59 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC-----------------------------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCC-----------------------------
Confidence            5678999999999999999999999985 4578899999999999998872                             


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                                                             .++++.|++.+.+.+.   +|..|.
T Consensus        60 -------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g~   81 (136)
T 2jab_A           60 -------------------------------------------------------LEIVEVLLKNGADVNA---VDAIGF   81 (136)
T ss_dssp             -------------------------------------------------------HHHHHHHHHTTCCTTC---CCTTCC
T ss_pred             -------------------------------------------------------HHHHHHHHHcCCCCCc---CCCCCC
Confidence                                                                   2344444454444433   567899


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      ||||+|+..|+.+++++|++.+++. ...|.+|+||||+|+.+|+.+++++|++.|
T Consensus        82 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           82 TPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999998775 456899999999999999999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.85  E-value=1.1e-21  Score=176.30  Aligned_cols=151  Identities=12%  Similarity=0.046  Sum_probs=122.9

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |++|++..+.. + ..+|.+|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+             
T Consensus        21 v~~ll~~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-------------   84 (179)
T 3f6q_A           21 VRLWLDNTEND-L-NQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGH-------------   84 (179)
T ss_dssp             HHHHHHCTTSC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC-------------
T ss_pred             HHHHHhcCccc-c-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCC-------------
Confidence            56777765432 2 247889999999999999999999999985 5578899999999999999982             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        85 -----------------------------------------------------------------------~~~v~~Ll~   93 (179)
T 3f6q_A           85 -----------------------------------------------------------------------RDIVQKLLQ   93 (179)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   234444455


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVAT  241 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  241 (488)
                      .+.+.+.   +|..|.||||+|+..|+.+++++|++.+.+. ..+|..|+||||+|+..++.+++++|++.|++    ++
T Consensus        94 ~g~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~----~~  165 (179)
T 3f6q_A           94 YKADINA---VNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMGQN----LN  165 (179)
T ss_dssp             TTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC----CS
T ss_pred             cCCCCCc---cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHHhhcC----cc
Confidence            4444433   5778999999999999999999999998875 46699999999999999999999999999876    45


Q ss_pred             cccCCC
Q 011338          242 NWDKAH  247 (488)
Q Consensus       242 ~~D~~G  247 (488)
                      ..+.++
T Consensus       166 ~~~~~~  171 (179)
T 3f6q_A          166 RIPYKD  171 (179)
T ss_dssp             CBCCCC
T ss_pred             cCCccc
Confidence            555444

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.84  E-value=2.3e-21  Score=169.91  Aligned_cols=138  Identities=14%  Similarity=0.145  Sum_probs=112.3

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|+++ ...+. ..+|.+|.||||+ +..|+.+++++|++.+ ..++.+|.+|.||||+|+..|+             
T Consensus        18 v~~ll~~-~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-------------   80 (156)
T 1bd8_A           18 VRRLLHR-ELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTGF-------------   80 (156)
T ss_dssp             HHHHHHT-TCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC-------------
T ss_pred             HHHHHHh-hCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCc-------------
Confidence            5677777 32222 2478899999999 9999999999999984 4578999999999999999982             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        81 -----------------------------------------------------------------------~~~v~~Ll~   89 (156)
T 1bd8_A           81 -----------------------------------------------------------------------LDTLKVLVE   89 (156)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   234444555


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      .+.+.+.   +|.+|.||||+|++.|+.+++++|++. .+ ...+|.+|+||||+|+.+|+.+++++|+++
T Consensus        90 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           90 HGADVNV---PDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCCSCC---CCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCC---cCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            5444443   577899999999999999999999998 55 456699999999999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.84  E-value=2e-21  Score=172.03  Aligned_cols=141  Identities=13%  Similarity=0.019  Sum_probs=113.3

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|++..+.. . ...+..|.||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|+             
T Consensus        24 v~~ll~~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-------------   87 (165)
T 3twr_A           24 VKKLCTVQSVN-C-RDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGH-------------   87 (165)
T ss_dssp             HHHHCCTTTTT-C-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC-------------
T ss_pred             HHHHHHcCCCC-c-cccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHHHHcCc-------------
Confidence            56777765422 2 246788999999999999999999999985 4578999999999999999982             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++++.|++
T Consensus        88 -----------------------------------------------------------------------~~~v~~Ll~   96 (165)
T 3twr_A           88 -----------------------------------------------------------------------YEVAELLVK   96 (165)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHHHHHHHh
Confidence                                                                                   134444445


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      .+.+.+.   +|..|.||||+|+..|+.+++++|++.+.+. ..+|.+|+||||+|+. ++.+++++|++.|+
T Consensus        97 ~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           97 HGAVVNV---ADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            4444433   5778999999999999999999999998875 4569999999999877 89999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=7.3e-21  Score=159.81  Aligned_cols=126  Identities=17%  Similarity=0.218  Sum_probs=105.1

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISH  100 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~  100 (488)
                      +|+||||.|+..|+.+++++|++.++ .++.+|..|.||||+|+..++                                
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~--------------------------------   47 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGH--------------------------------   47 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTC--------------------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCc--------------------------------
Confidence            58999999999999999999999854 478889999999999998872                                


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHH
Q 011338          101 GDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVV  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpL  180 (488)
                                                                          .++++.+++.+...+.   +|..|.|||
T Consensus        48 ----------------------------------------------------~~~~~~Ll~~g~~~~~---~~~~g~t~l   72 (126)
T 1n0r_A           48 ----------------------------------------------------LEVVKLLLEAGADVNA---KDKNGRTPL   72 (126)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred             ----------------------------------------------------HHHHHHHHHcCCCCcc---cCCCCCcHH
Confidence                                                                1334444444433332   567799999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      |+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           73 HLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999998875 45689999999999999999999999998863

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=1.7e-21  Score=167.04  Aligned_cols=102  Identities=10%  Similarity=-0.019  Sum_probs=85.9

Q ss_pred             HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCC-CccHHHHHHhcCChhHHHHHHhc
Q 011338          154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDY-NRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~-g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      ++++.|++.+.+.+.   +|..|+||||+|+. |+.+++++|++.+++.. .+|.. |+||||+|+..|+.+++++|++.
T Consensus        26 ~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  100 (136)
T 1d9s_A           26 ETVRQLLEAGADPNA---LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRA  100 (136)
T ss_dssp             HHHHHHHHTTCCTTC---CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcCC---cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            344445554444433   57789999999999 99999999999988854 55888 99999999999999999999999


Q ss_pred             CCccccccccccCCCCcHHHHHHHhCCCCCcc
Q 011338          233 GAKKNSVATNWDKAHNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       233 ~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~  264 (488)
                      |++    ++.+|.+|+||||+|+..++.++++
T Consensus       101 ga~----~~~~d~~g~tpl~~A~~~~~~~~~~  128 (136)
T 1d9s_A          101 GAR----LDVCDAWGRLPVDLAEEQGHRDIAR  128 (136)
T ss_dssp             CCC----CCCCSSSSSCHHHHHHHHTCHHHHH
T ss_pred             CCC----CCccCCCCCCHHHHHHHcCCHHHHH
Confidence            876    7999999999999999999876654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=8.5e-21  Score=185.40  Aligned_cols=145  Identities=9%  Similarity=0.015  Sum_probs=112.7

Q ss_pred             CCchhHHHHHHHcCCccHHHHHHHhCcccccc------ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           20 TNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYA------QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        20 ~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~------~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      ..+.++||.|+..|+.+.++.|++.+++ ++.      .|.+|+||||+|+..++.                        
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~------------------------  203 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQ------------------------  203 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCT------------------------
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhccc------------------------
Confidence            3456889999999999999999988655 454      688999999999987510                        


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK  173 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~  173 (488)
                                                                               +..++++.|++.+.+++.   +|
T Consensus       204 ---------------------------------------------------------~~~~iv~~Ll~~gadvn~---~d  223 (301)
T 2b0o_E          204 ---------------------------------------------------------ASLPLVDFIIQNGGHLDA---KA  223 (301)
T ss_dssp             ---------------------------------------------------------TTHHHHHHHHHHSSCTTC---CC
T ss_pred             ---------------------------------------------------------CcHHHHHHHHhcCCCCCC---CC
Confidence                                                                     113455666666555544   67


Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ  253 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl  253 (488)
                      .+|.||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|+..|+.+++++|++.+++          .|+||||+
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~g~tpLh~  292 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG----------TFAFPLHV  292 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------TTSSCCC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------CCCChhHH
Confidence            88999999999999999999999998875 46699999999999999999999999998642          58999999


Q ss_pred             HHHhCCC
Q 011338          254 AAFLAPS  260 (488)
Q Consensus       254 A~~~~~~  260 (488)
                      |+..|+.
T Consensus       293 A~~~g~~  299 (301)
T 2b0o_E          293 DYSWVIS  299 (301)
T ss_dssp             -------
T ss_pred             HHhcCCc
Confidence            9999874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.81  E-value=6e-21  Score=167.62  Aligned_cols=122  Identities=9%  Similarity=-0.029  Sum_probs=85.7

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCcc-HHHHHHhcCChhHHHHHHhcC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRH-IFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      +++.|++.+...+.   +|..|+||||+|+ .|+.+++++|++.+.+. +.+|..|+| |||+|+.+|+.+++++|++.|
T Consensus        27 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g  101 (156)
T 1bi7_B           27 EVRALLEAGANPNA---PNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG  101 (156)
T ss_dssp             HHHHHHTTTCCTTC---CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCC---CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC
Confidence            44444444433333   5778999999985 99999999999998774 466999999 999999999999999999998


Q ss_pred             CccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchh
Q 011338          234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRA  304 (488)
Q Consensus       234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~  304 (488)
                      ++    ++.+|.+|+||||+|+..|+.++++.|..                   .....+.+|..|.||.+
T Consensus       102 a~----~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B          102 AR----LDVRDAWGRLPVDLAEELGHRDVARYLRA-------------------AAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             CC----SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-------------------CC---------------
T ss_pred             CC----CcccCCCCCCHHHHHHHhCHHHHHHHHHH-------------------cCCCCCccCcCcCcccc
Confidence            76    79999999999999999998665533211                   23456777888888865

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.81  E-value=5.7e-21  Score=172.50  Aligned_cols=47  Identities=17%  Similarity=0.010  Sum_probs=34.9

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      +.+|.||||.|+..|+.++++.|++  +.+++.+|.+|+||||+|+..|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~   87 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLG   87 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcC
Confidence            4577888888888888888888887  4456677777777777777666

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.81  E-value=6.7e-21  Score=163.36  Aligned_cols=50  Identities=20%  Similarity=0.083  Sum_probs=39.0

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      .+|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   54 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHG   54 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcC
Confidence            36888889999999999999998888874 346677777777777777666

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.81  E-value=5.9e-21  Score=180.76  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=99.5

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI   98 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~   98 (488)
                      +.+|.||||+|+..|+.++++.|++  +.+++.+|.+|+||||+||..|+                              
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~------------------------------   89 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGS------------------------------   89 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTC------------------------------
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCC------------------------------
Confidence            4578888888888888888888888  44577888888888888888772                              


Q ss_pred             CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhh-cCcc
Q 011338           99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEK-VGIK  177 (488)
Q Consensus        99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~-~~g~  177 (488)
                                                                            .++++.|++.+.+.+.   ++ ..|.
T Consensus        90 ------------------------------------------------------~~~v~~Ll~~ga~~~~---~~~~~g~  112 (244)
T 3ui2_A           90 ------------------------------------------------------DKCVRLLAEAGADLDH---RDMRGGL  112 (244)
T ss_dssp             ------------------------------------------------------HHHHHHHHHTTCCTTC---CCSSSCC
T ss_pred             ------------------------------------------------------HHHHHHHHHcCCCCCc---CCCCCCC
Confidence                                                                  1344444444444433   33 5688


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      ||||+|+..|+.+++++|++++++. +.+|..|+||||+|+..++                     +..|.||||+|+..
T Consensus       113 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~---------------------~~~~~~~l~~a~~~  170 (244)
T 3ui2_A          113 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK---------------------TTPKGNPMQFGRRI  170 (244)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT---------------------TCCCSSHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh---------------------ccCCCCHHHHHHHc
Confidence            8888888888888888888887764 3558888888888875221                     14578888888888


Q ss_pred             CCCCCcccc
Q 011338          258 APSSQLDRV  266 (488)
Q Consensus       258 ~~~~~v~~l  266 (488)
                      |+.++++.+
T Consensus       171 g~~~iv~~L  179 (244)
T 3ui2_A          171 GLEKVINVL  179 (244)
T ss_dssp             HHHHHHHHH
T ss_pred             ChHHHHHHH
Confidence            876665443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.81  E-value=1.3e-20  Score=161.52  Aligned_cols=102  Identities=13%  Similarity=0.028  Sum_probs=84.5

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      +++.+++.+...+.   +|..|.||||+|+..|+.+++++|++.+.+. ..+|..|+||||+|+.+|+.+++++|++.|+
T Consensus        25 ~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  100 (137)
T 3c5r_A           25 SVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA  100 (137)
T ss_dssp             HHHHHHHTTCCSCC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCc---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34444444444433   5778999999999999999999999998774 4568999999999999999999999999987


Q ss_pred             ccccccccccCCCCcHHHHHHHhCCCCCcc
Q 011338          235 KKNSVATNWDKAHNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       235 ~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~  264 (488)
                      +    ++.+|.+|+||||+|+..+..++++
T Consensus       101 ~----~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A          101 S----RNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             C----TTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             C----CCCCCCCCCCHHHHHhhccHHHHHh
Confidence            6    7999999999999999877655443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=9.1e-21  Score=171.15  Aligned_cols=88  Identities=9%  Similarity=-0.007  Sum_probs=78.8

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +|.+|+||||+|+..|+.+++++|++.+++.....+..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+|||
T Consensus        72 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl  147 (183)
T 3deo_A           72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----IEVEDERGLTAL  147 (183)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC----CcCCCCCCCCHH
Confidence            5778999999999999999999999999886544338999999999999999999999999876    789999999999


Q ss_pred             HHHHHhCCCCCc
Q 011338          252 HQAAFLAPSSQL  263 (488)
Q Consensus       252 hlA~~~~~~~~v  263 (488)
                      |+|++.++.+..
T Consensus       148 ~~A~~~~~~~~~  159 (183)
T 3deo_A          148 ELAREILKTTPK  159 (183)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHhccCccc
Confidence            999998765543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.80  E-value=3.8e-20  Score=158.57  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=80.0

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +|..|.||||+|+..|+.+++++|++.+++. +..|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+|||
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~tpl  117 (136)
T 2jab_A           43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAF  117 (136)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcCcCCCCCCHH
Confidence            5677999999999999999999999998875 45689999999999999999999999999876    789999999999


Q ss_pred             HHHHHhCCCCCcc
Q 011338          252 HQAAFLAPSSQLD  264 (488)
Q Consensus       252 hlA~~~~~~~~v~  264 (488)
                      |+|+..|+.++++
T Consensus       118 ~~A~~~~~~~~~~  130 (136)
T 2jab_A          118 DISIGNGNEDLAE  130 (136)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHCCCHHHHH
Confidence            9999999876553

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=7.7e-20  Score=153.70  Aligned_cols=81  Identities=16%  Similarity=0.092  Sum_probs=74.0

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +|..|+||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+|||
T Consensus        36 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l  110 (123)
T 3aaa_C           36 TLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD----KTVKGPDGLTAF  110 (123)
T ss_dssp             CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHH
Confidence            5778999999999999999999999998875 45699999999999999999999999999876    789999999999


Q ss_pred             HHHHHh
Q 011338          252 HQAAFL  257 (488)
Q Consensus       252 hlA~~~  257 (488)
                      |+|...
T Consensus       111 ~~A~~~  116 (123)
T 3aaa_C          111 EATDNQ  116 (123)
T ss_dssp             HHCCCH
T ss_pred             HHhCCH
Confidence            999544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.79  E-value=2e-20  Score=177.11  Aligned_cols=84  Identities=10%  Similarity=-0.010  Sum_probs=76.3

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +|..|+||||+||..|+.+++++|++.+++.....+..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+|||
T Consensus        73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~t~l  148 (244)
T 3ui2_A           73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----IEVEDERGLTAL  148 (244)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCcHH
Confidence            6778999999999999999999999999886555348899999999999999999999999887    789999999999


Q ss_pred             HHHHHhCC
Q 011338          252 HQAAFLAP  259 (488)
Q Consensus       252 hlA~~~~~  259 (488)
                      |+|+..++
T Consensus       149 ~~A~~~~~  156 (244)
T 3ui2_A          149 ELAREILK  156 (244)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998655

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=2.3e-20  Score=169.18  Aligned_cols=131  Identities=11%  Similarity=0.017  Sum_probs=108.5

Q ss_pred             CCchhHHHHHHHcCCc----cHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           20 TNGAMLLTSCIIDDIF----DIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        20 ~~G~T~LH~A~~~g~~----div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      ..|+||||+|+..|+.    +++++||+. +.+++.+|.+|+||||+|+..++..                         
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~-------------------------   89 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGND-------------------------   89 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTC-------------------------
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcc-------------------------
Confidence            6799999999999975    599999998 5568999999999999999887210                         


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG  175 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~  175 (488)
                                                                           -....++++.|++.+.+++.   +|..
T Consensus        90 -----------------------------------------------------~~~~~~iv~~Ll~~Gadin~---~d~~  113 (186)
T 3t8k_A           90 -----------------------------------------------------ITGTTELCKIFLEKGADITA---LYKP  113 (186)
T ss_dssp             -----------------------------------------------------HHHHHHHHHHHHHTTCCSSS---CBGG
T ss_pred             -----------------------------------------------------hhhHHHHHHHHHHCCCCCCc---cCCC
Confidence                                                                 00124677777887777665   6888


Q ss_pred             cc-hHHHHHHHc-----CcHHHHHHHHH-hCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          176 IK-KVVFIAVKH-----GIVEFITEIMK-HYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       176 g~-tpLh~Aa~~-----G~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      |+ ||||+|+..     ++.+++++|++ .+++. +.+|..|+||||+|++.|+.+++++|.+..
T Consensus       114 g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            99 999999994     45679999999 88775 566999999999999999999999999764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.79  E-value=2e-19  Score=150.93  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      ++..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|.+    ++.+|.+|+|||
T Consensus        31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~l  105 (126)
T 1n0r_A           31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPL  105 (126)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC----CcccCCCCCCHH
Confidence            5677999999999999999999999998775 45689999999999999999999999999876    789999999999


Q ss_pred             HHHHHhCCCCCcc
Q 011338          252 HQAAFLAPSSQLD  264 (488)
Q Consensus       252 hlA~~~~~~~~v~  264 (488)
                      |+|+..|+.++++
T Consensus       106 ~~A~~~~~~~~~~  118 (126)
T 1n0r_A          106 HLAARNGHLEVVK  118 (126)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHH
Confidence            9999999876654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.79  E-value=5.9e-20  Score=170.92  Aligned_cols=63  Identities=10%  Similarity=-0.012  Sum_probs=36.0

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      +|..|.||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+..++.++++.|++.++.
T Consensus       136 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          136 QNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            4555666777766666666666666666553 34466666677766666666666666666543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=1.3e-19  Score=152.33  Aligned_cols=115  Identities=12%  Similarity=0.016  Sum_probs=92.3

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .+..|.||||.|+..|+.+++++|++.++ .++.+|.+|+||||+|+..|+                             
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~-----------------------------   52 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQ-----------------------------   52 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTC-----------------------------
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCC-----------------------------
Confidence            35678999999999999999999999865 578999999999999999982                             


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                                                                             .++++.|++.+.+.+.   +|..|+
T Consensus        53 -------------------------------------------------------~~~v~~Ll~~g~~~~~---~d~~g~   74 (123)
T 3aaa_C           53 -------------------------------------------------------LEILEFLLLKGADINA---PDKHHI   74 (123)
T ss_dssp             -------------------------------------------------------HHHHHHHHTTTCCTTC---CCTTSC
T ss_pred             -------------------------------------------------------HHHHHHHHHcCCCCCc---CCCCCC
Confidence                                                                   2344445554444433   677899


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcC
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQR  221 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  221 (488)
                      ||||+|+..|+.+++++|++.+++. ..+|.+|+||||+|...+
T Consensus        75 tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           75 TPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHH
Confidence            9999999999999999999998875 456999999999995443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.78  E-value=4.7e-20  Score=172.82  Aligned_cols=104  Identities=7%  Similarity=-0.027  Sum_probs=87.2

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      +++.|++.+.+.+.   +|.+|+||||+||..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|+
T Consensus        36 ~v~~Ll~~g~~~~~---~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  111 (229)
T 2vge_A           36 VVQQAVKEMNDPSQ---PNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA  111 (229)
T ss_dssp             HHHHHHHHSSCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            44444444444333   6778999999999999999999999998875 4569999999999999999999999999987


Q ss_pred             cccccccccc-CCCCcHHHHH--HHhCCCCCcccc
Q 011338          235 KKNSVATNWD-KAHNNILHQA--AFLAPSSQLDRV  266 (488)
Q Consensus       235 ~~~~~~~~~D-~~G~TpLhlA--~~~~~~~~v~~l  266 (488)
                      +    ++.+| .+|+||||+|  +..|+.++++.+
T Consensus       112 ~----~~~~~~~~g~tpL~~A~a~~~~~~~~v~~L  142 (229)
T 2vge_A          112 A----IFATTLSDGATAFEKCDPYREGYADCATYL  142 (229)
T ss_dssp             C----TTCCCSSTTCCTGGGCCTTSTTHHHHHHHH
T ss_pred             C----cccccCCCCCCHHHHHHHHhcChHHHHHHH
Confidence            6    68876 6999999999  888888887665

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.76  E-value=2e-19  Score=167.36  Aligned_cols=105  Identities=11%  Similarity=0.051  Sum_probs=85.2

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      +++.|++.+.+.+.   +|..|+||||+||..|+.+++++|++......+.+|..|+||||+|+..|+.+++++|++.|+
T Consensus        88 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  164 (222)
T 3ehr_A           88 WLRECLDNRVGVNG---LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA  164 (222)
T ss_dssp             HHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCCccc---cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            33344444433332   577899999999999999999999998333356679999999999999999999999999988


Q ss_pred             ccccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          235 KKNSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       235 ~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      +    ++.+|.+|+||||+|+..++.++++.+
T Consensus       165 ~----~~~~~~~g~t~l~~A~~~~~~~~l~~l  192 (222)
T 3ehr_A          165 R----TDLRNIEKKLAFDMATNAACASLLKKK  192 (222)
T ss_dssp             C----SCCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred             C----CccccCCCCCHHHHhcchhHHHHHHHH
Confidence            7    789999999999999998876666544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.75  E-value=6.8e-20  Score=184.08  Aligned_cols=113  Identities=11%  Similarity=-0.082  Sum_probs=82.1

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccc--cccccCCCChHHHHHhhCCCCCCCCchhhH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKL--AYAQDNDGDTAIDMLAQKPSAFPSGTQLAF   78 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~--~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~   78 (488)
                      +|++|+++++........|..|.||||+|+..|+.|+|++|++.+++.  .+..+.+ .||||+||..|       +.++
T Consensus       107 ~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G-------~~ei  178 (376)
T 2aja_A          107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG-------HLHV  178 (376)
T ss_dssp             HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT-------CHHH
T ss_pred             HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC-------CHHH
Confidence            478888888744333345778999999999999999999999997531  1222333 99999999999       5778


Q ss_pred             HHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHH-HHHHHHHHHHHhhcc
Q 011338           79 WKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRA-MTKLLHMVWKSLNLF  135 (488)
Q Consensus        79 ~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~-~~~~~~~~~~ll~~~  135 (488)
                      ++.|+....++..-              ..+..|.||||.|+ ..++.++++.|++.+
T Consensus       179 v~~Ll~~ga~~~~~--------------~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          179 LNRLCELAPTEATA--------------MIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHSCGGGHHH--------------HHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHHHcCCccchh--------------ccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            88888665432210              01345899999999 999999999998855

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=3e-18  Score=171.49  Aligned_cols=151  Identities=12%  Similarity=0.010  Sum_probs=105.8

Q ss_pred             CCCCchhHHHHHHHc-CCccHHHHHHHhCcccccccc--CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccc
Q 011338           18 KGTNGAMLLTSCIID-DIFDIPLDLLQRYRKLAYAQD--NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYA   94 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~-g~~div~~LL~~~~~~~~~~d--~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~   94 (488)
                      .+..+.|+||.|+.. |+.++++.||+.+. +++..|  .+|.||||+||..|+                          
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~--------------------------  247 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGA-DVNWVNGGQDNATPLIQATAANS--------------------------  247 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTC--------------------------
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCC--------------------------
Confidence            345678999999999 99999999999854 577777  889999999999882                          


Q ss_pred             cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhc
Q 011338           95 SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKV  174 (488)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~  174 (488)
                                                                                .++++.|++.+.+++.   +|.
T Consensus       248 ----------------------------------------------------------~~iv~~LL~~Gadvn~---~d~  266 (368)
T 3jue_A          248 ----------------------------------------------------------LLACEFLLQNGANVNQ---ADS  266 (368)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHTTCCTTC---CCT
T ss_pred             ----------------------------------------------------------HHHHHHHHHcCCCCCC---CCC
Confidence                                                                      2344555555555443   677


Q ss_pred             CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          175 GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       175 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      .|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+..|+.+++++|++.+.. .......+..|.|+|+++
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHH
Confidence            8999999999999999999999998875 45699999999999999999999999987643 223345677888999887


Q ss_pred             HHhC
Q 011338          255 AFLA  258 (488)
Q Consensus       255 ~~~~  258 (488)
                      ....
T Consensus       345 ~~~~  348 (368)
T 3jue_A          345 RDFS  348 (368)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            6543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.73  E-value=2.6e-18  Score=136.79  Aligned_cols=85  Identities=19%  Similarity=0.225  Sum_probs=76.8

Q ss_pred             CcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHH
Q 011338          175 GIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       175 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      +|+||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHH
Confidence            4899999999999999999999998875 45699999999999999999999999999876    799999999999999


Q ss_pred             HHhCCCCCcc
Q 011338          255 AFLAPSSQLD  264 (488)
Q Consensus       255 ~~~~~~~~v~  264 (488)
                      +..|+.++++
T Consensus        76 ~~~~~~~~~~   85 (93)
T 1n0q_A           76 ARNGHLEVVK   85 (93)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            9999876654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=1.2e-17  Score=161.25  Aligned_cols=129  Identities=8%  Similarity=0.011  Sum_probs=98.2

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccc-----cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKL-----AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~-----~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      ...++||.|+..|+.+.++.+++.+.+.     ++..|..|+||||+||..|+.                          
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~--------------------------  182 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR--------------------------  182 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT--------------------------
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhccc--------------------------
Confidence            3467888999999988888888886653     344577888999988887410                          


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVG  175 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~  175 (488)
                                                                             +..++++.|++.+.+++.   +|.+
T Consensus       183 -------------------------------------------------------~~~~~v~~Ll~~ga~in~---~d~~  204 (278)
T 1dcq_A          183 -------------------------------------------------------TSLHIVDFLVQNSGNLDK---QTGK  204 (278)
T ss_dssp             -------------------------------------------------------TTHHHHHHHHHHCSCTTC---CCTT
T ss_pred             -------------------------------------------------------chHHHHHHHHHCCCCccc---cCCC
Confidence                                                                   013455555555555443   5778


Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      |+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+..|+.+++++|++.|+
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            899999999999999999999988775 4568899999999999999999999988864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.70  E-value=2e-17  Score=165.50  Aligned_cols=114  Identities=14%  Similarity=0.028  Sum_probs=81.2

Q ss_pred             cCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHH
Q 011338          174 VGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQ  253 (488)
Q Consensus       174 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhl  253 (488)
                      ..|.||||+|+..|+.+++++|++++.+.. ..|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad----~~~~d~~G~TpL~~  307 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLKRGAD----LGARDSEGRDPLTI  307 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC----CCCcCCCCCCHHHH
Confidence            679999999999999999999999988754 6699999999999999999999999999887    79999999999999


Q ss_pred             HHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          254 AAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       254 A~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      |+..|+.++++.|....                .........+..+.|+++++..
T Consensus       308 A~~~g~~~iv~lLl~~~----------------~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          308 AMETANADIVTLLRLAK----------------MREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHTTCHHHHHHHHHHH----------------C---------------------
T ss_pred             HHHCCCHHHHHHHHHcC----------------CCcccccccCCCCCCHHHHHHH
Confidence            99999977664431110                1112223456678899888754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.70  E-value=4.8e-17  Score=156.89  Aligned_cols=88  Identities=10%  Similarity=0.076  Sum_probs=80.4

Q ss_pred             hhcCcchHHHHHHHc---CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC
Q 011338          172 EKVGIKKVVFIAVKH---GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN  248 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~  248 (488)
                      .+..|+||||+|+..   |+.+++++|++++++. +.+|.+|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~  239 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS----IEIANESGE  239 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSC
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCccCCCC
Confidence            467799999999999   9999999999999885 45699999999999999999999999999987    799999999


Q ss_pred             cHHHHHHHhCCCCCcc
Q 011338          249 NILHQAAFLAPSSQLD  264 (488)
Q Consensus       249 TpLhlA~~~~~~~~v~  264 (488)
                      ||||+|+..|+.++++
T Consensus       240 tpL~~A~~~~~~~~v~  255 (278)
T 1dcq_A          240 TPLDIAKRLKHEHCEE  255 (278)
T ss_dssp             CHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHcCCHHHHH
Confidence            9999999999876653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.69  E-value=4e-17  Score=129.87  Aligned_cols=46  Identities=22%  Similarity=0.245  Sum_probs=28.0

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      +|+||||+|+..|+.+++++|++.+. .++.+|.+|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~~   46 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNG   46 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcC
Confidence            46777777777777777777777633 34555555555555555544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.69  E-value=5.1e-17  Score=158.54  Aligned_cols=107  Identities=14%  Similarity=0.083  Sum_probs=88.1

Q ss_pred             hhcCcchHHHHHHHc---CcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCC
Q 011338          172 EKVGIKKVVFIAVKH---GIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHN  248 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~  248 (488)
                      .+..|.||||+|+..   |+.+++++|++.+++. +.+|.+|+||||+|+..|+.+++++|++.|++    ++.+|.+|+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~  260 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL----VGTVNEAGE  260 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----CSCCCTTSC
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCC
Confidence            366799999999997   9999999999998875 45699999999999999999999999999887    799999999


Q ss_pred             cHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          249 NILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       249 TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      ||||+|+..|+.++++.|                         .+...+.|.||++++.+
T Consensus       261 TpL~~A~~~~~~~iv~~L-------------------------l~~ga~~g~tpLh~A~~  295 (301)
T 2b0o_E          261 TALDIARKKHHKECEELL-------------------------EQAQAGTFAFPLHVDYS  295 (301)
T ss_dssp             CHHHHHHHHTCHHHHHHH-------------------------HHHHHHTTSSCCC----
T ss_pred             CHHHHHHHcCCHHHHHHH-------------------------HHhcCCCCCChhHHHHh
Confidence            999999999986655322                         11222478999999765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.67  E-value=5.2e-17  Score=134.45  Aligned_cols=89  Identities=11%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      +++.|++.+.+.+.   +|..|.||||+|+..|+.+++++|++.+++. ..+|..|+||||+|+..|+.+++++|++.|+
T Consensus        24 ~~~~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga   99 (115)
T 2l6b_A           24 EVKKLLSKGADVNA---RSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGA   99 (115)
T ss_dssp             HHHHHTTTTCCSSC---CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS
T ss_pred             HHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            34444444433333   5677889999999999999999998887774 4558888999999999999999999988887


Q ss_pred             ccccccccccCCCCcHH
Q 011338          235 KKNSVATNWDKAHNNIL  251 (488)
Q Consensus       235 ~~~~~~~~~D~~G~TpL  251 (488)
                      +    +|.+|..|.||=
T Consensus       100 ~----~n~~~~~~~~~~  112 (115)
T 2l6b_A          100 D----VNARSWGSSHHH  112 (115)
T ss_dssp             S----HHHHSCCCC---
T ss_pred             C----CCcCCccccccc
Confidence            6    688888888873

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.66  E-value=2.7e-17  Score=136.23  Aligned_cols=108  Identities=13%  Similarity=0.072  Sum_probs=89.7

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      +|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+|||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~d~~g~tpl   79 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----VNARSKDGNTPE   79 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----TTCCCTTCCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CcccCCCCCCHH
Confidence            5778999999999999999999999998874 45699999999999999999999999999876    789999999999


Q ss_pred             HHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCch
Q 011338          252 HQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPR  303 (488)
Q Consensus       252 hlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~  303 (488)
                      |+|+..++.++++.+.                   -...+.+.++..|.||.
T Consensus        80 ~~A~~~~~~~~~~~Ll-------------------~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLD-------------------AKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHH-------------------TTSSSHHHHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHH-------------------HcCCCCCcCCccccccc
Confidence            9999999865543221                   02345677888888874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.64  E-value=1.4e-16  Score=130.98  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=78.2

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNIL  251 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  251 (488)
                      .|.+|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+|||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl   94 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----VXAQDKFGKTAF   94 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccccCCCcHH
Confidence            4778999999999999999999999998775 45699999999999999999999999999876    799999999999


Q ss_pred             HHHHHhCCCCCc
Q 011338          252 HQAAFLAPSSQL  263 (488)
Q Consensus       252 hlA~~~~~~~~v  263 (488)
                      |+|+..|+.+++
T Consensus        95 ~~A~~~~~~~~~  106 (110)
T 2zgd_A           95 DISIDNGNEDLA  106 (110)
T ss_dssp             HHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHH
Confidence            999999986654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.58  E-value=1.9e-15  Score=157.81  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=81.9

Q ss_pred             hcCcchHHHHHHH---cCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338          173 KVGIKKVVFIAVK---HGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN  249 (488)
Q Consensus       173 ~~~g~tpLh~Aa~---~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  249 (488)
                      |..|.||||+||.   .|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+|
T Consensus       168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~t  242 (497)
T 3lvq_E          168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL----VGTVNEAGET  242 (497)
T ss_dssp             CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCC----CSCCCTTCCC
T ss_pred             ccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCC
Confidence            6789999999976   99999999999999875 45699999999999999999999999999987    7999999999


Q ss_pred             HHHHHHHhCCCCCcccc
Q 011338          250 ILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~l  266 (488)
                      |||+|+..|+.++++.|
T Consensus       243 pl~~A~~~~~~~~~~~L  259 (497)
T 3lvq_E          243 ALDIARKKHHKECEELL  259 (497)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            99999999998887655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.53  E-value=1.5e-14  Score=118.72  Aligned_cols=51  Identities=18%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             CCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCC
Q 011338           16 PDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKP   67 (488)
Q Consensus        16 ~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g   67 (488)
                      ...|.+|.||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+||..|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~   68 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNG   68 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence            356788889999999988888888888774 345556666666666665555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.86
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.8
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.77
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.76
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.76
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.76
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.69

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.7e-31  Score=250.58  Aligned_cols=219  Identities=13%  Similarity=0.003  Sum_probs=165.2

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhC--ccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcccc
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRY--RKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYAS   95 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~   95 (488)
                      -|++|+||||+||++|+.+++++||+.+  +..++.+|.+|+||||+||..|       ..++++.|+....++      
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g-------~~~iv~~Ll~~ga~i------   71 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-------EASTVEKLYAAGAGV------   71 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS------
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhc-------ccccccccccccccc------
Confidence            5789999999999999999999999874  4557788999999999999999       466777777543322      


Q ss_pred             CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHH--------HHHHh--hH----hH----HH-HH
Q 011338           96 NNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIY--------EVKLA--HV----QT----QE-LL  156 (488)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~--h~----~~----~~-il  156 (488)
                                ...+..|++|+|.|+..++.++++.+++..........        .....  +.    ..    .. ..
T Consensus        72 ----------~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (255)
T d1oy3d_          72 ----------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE  141 (255)
T ss_dssp             ----------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------
T ss_pred             ----------cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHH
Confidence                      12456789999999999999999999876532211110        00000  00    00    00 00


Q ss_pred             HHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcc
Q 011338          157 SCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKK  236 (488)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  236 (488)
                      ..........   ..+|.+|.||||+||+.|+.++++.|++.+++.....+..|+||||+|++.|+.+++++|++.|++ 
T Consensus       142 ~~~~~~~~~i---n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-  217 (255)
T d1oy3d_         142 PRDEDWRLQL---EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-  217 (255)
T ss_dssp             --CCCGGGGT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHhhhcCccc---ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC-
Confidence            0001111111   125788999999999999999999999999888777788999999999999999999999999876 


Q ss_pred             ccccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          237 NSVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       237 ~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                         ++.+|++|+||||+|+..++.++++.|
T Consensus       218 ---in~~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         218 ---PTARMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             ---TTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             ---CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence               799999999999999999997766443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8e-29  Score=229.46  Aligned_cols=217  Identities=12%  Similarity=0.046  Sum_probs=169.9

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      ++++||.+|..|+.+.++.+|+.++.+++.+|.+|+||||+||..|       +.++++.++......            
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g-------~~e~~~~l~~~~~~~------------   63 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAG-------HTEIVEFLLQLGVPV------------   63 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-------CHHHHHHHHHHTCCS------------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhh-------hhccccccccccccc------------
Confidence            4689999999999999999999999999999999999999999999       456667665433211            


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                          ......+.++++.++..++.++++.+++                            .+.+.+.   +|.+|.||||
T Consensus        64 ----~~~~~~~~~~~~~~~~~~~~~i~~~Ll~----------------------------~~~d~~~---~d~~g~tpL~  108 (223)
T d1uoha_          64 ----NDKDDAGWSPLHIAASAGRDEIVKALLG----------------------------KGAQVNA---VNQNGCTPLH  108 (223)
T ss_dssp             ----CCCCTTCCCHHHHHHHHTCHHHHHHHHH----------------------------TTCCTTC---CCTTCCCHHH
T ss_pred             ----ccccccccccccccccccccchhHHHhc----------------------------cCceeEe---eCCCCCchhh
Confidence                1123345667777766665555555443                            3333332   6778999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSS  261 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~  261 (488)
                      +|+..|+.+++++|++++.+. +.+|.+|.||||+|+..++.+++++|.+.+.+    ++.+|.+|+||||+|+..|+.+
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~----i~~~d~~g~TpL~~Aa~~g~~~  183 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAS----TNIQDTEGNTPLHLACDEERVE  183 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccce----eeeccCCCCceeccccccCcHH
Confidence            999999999999999998775 46699999999999999999999999998765    7999999999999999999866


Q ss_pred             CcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHHHHHHHHh
Q 011338          262 QLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQHKKLVEQ  316 (488)
Q Consensus       262 ~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~~~~l~~~  316 (488)
                      +++.+.                +   .+.+.+.+|++|+||++++...+.+.++.
T Consensus       184 ~v~~LL----------------~---~Gad~~~~d~~g~tpl~~A~~~~~~i~~~  219 (223)
T d1uoha_         184 EAKLLV----------------S---QGASIYIENKEEKTPLQVAKGGLGLILKR  219 (223)
T ss_dssp             HHHHHH----------------H---TTCCSCCCCTTSCCHHHHCCTTHHHHHHH
T ss_pred             HHHHHH----------------H---CCCCCCCCCCCCCCHHHHHHCCCHHHHhc
Confidence            553321                1   22456788999999999997766665543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.3e-28  Score=223.47  Aligned_cols=208  Identities=11%  Similarity=-0.007  Sum_probs=163.5

Q ss_pred             hhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCC
Q 011338           23 AMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGD  102 (488)
Q Consensus        23 ~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~  102 (488)
                      +||||+||..|+.++++.||+.++.+++.+|.+|+||||+|+..|       ..++++.++....++...          
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g-------~~~iv~~Ll~~ga~~~~~----------   63 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ-------AHEITSFLLSKMENVNLD----------   63 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTT-------CHHHHHHHHTTCTTCCGG----------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcC-------Cccccchhhhhhcccccc----------
Confidence            589999999999999999999999999999999999999999999       466777777543322110          


Q ss_pred             CCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHH------HHhhHhHHHHHHHHhhhhcccCchhhhhcC
Q 011338          103 IERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEV------KLAHVQTQELLSCVCREISTQGESQFEKVG  175 (488)
Q Consensus       103 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~------~~~h~~~~~il~~l~~~~~~~~~~~~~~~~  175 (488)
                         ...+..+.+++|.+...+..+++..++..+... .......      ........+++..++..+...+.   +|.+
T Consensus        64 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~---~~~~  137 (229)
T d1ixva_          64 ---DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI---KDKF  137 (229)
T ss_dssp             ---GCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC---CCTT
T ss_pred             ---ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc---cCCC
Confidence               113456789999999999999998887665321 1111000      00112345677777776655443   6788


Q ss_pred             cchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc-CCccccccccccCCCCcHHHHH
Q 011338          176 IKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM-GAKKNSVATNWDKAHNNILHQA  254 (488)
Q Consensus       176 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~~~~D~~G~TpLhlA  254 (488)
                      |+||||+|+..|+.++++.|++.++.....+|.+|+||||+|+++|+.+++++|++. |++    ++.+|.+|+||||+|
T Consensus       138 g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad----~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         138 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVA  213 (229)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCCCTTSCCTGGGC
T ss_pred             CCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC----CCCcCCCCCCHHHHH
Confidence            999999999999999999999998877778899999999999999999999999974 776    799999999999999


Q ss_pred             HHh
Q 011338          255 AFL  257 (488)
Q Consensus       255 ~~~  257 (488)
                      +..
T Consensus       214 ~~~  216 (229)
T d1ixva_         214 LNE  216 (229)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.7e-28  Score=233.66  Aligned_cols=221  Identities=10%  Similarity=-0.004  Sum_probs=163.9

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhC-------ccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhh
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRY-------RKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIR   90 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~-------~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~   90 (488)
                      ++++|+||||+||..|+.++|+.|+...       +.+++.+|.+|+||||+|+..|       ..++++.|+....++ 
T Consensus        29 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g-------~~~iv~~Ll~~Gad~-  100 (277)
T d2fo1e1          29 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-------RRRLVAYLMKAGADP-  100 (277)
T ss_dssp             CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT-------CHHHHHHHHHTTCCS-
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccc-------ccccccccccccccc-
Confidence            3457999999999999999999987653       3568899999999999999999       467788777654322 


Q ss_pred             hccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh----------hhhHHHHHH-hhHhHHHHHHHH
Q 011338           91 SAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA----------IKHIYEVKL-AHVQTQELLSCV  159 (488)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~----------~~~~~~~~~-~h~~~~~il~~l  159 (488)
                                     ...+..|.|+++.+...++.++...+.......          ......... .+......+..+
T Consensus       101 ---------------n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (277)
T d2fo1e1         101 ---------------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL  165 (277)
T ss_dssp             ---------------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             ---------------ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccc
Confidence                           124567899999999999888887776543110          000111111 111222233322


Q ss_pred             hhhhcccC-----chhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          160 CREISTQG-----ESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       160 ~~~~~~~~-----~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      ........     .....+.+|.||||+++..|+.++++.++...+.....+|..|+||||+|++.|+.+++++|++.|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga  245 (277)
T d2fo1e1         166 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA  245 (277)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence            22221111     1112466799999999999999999998887777677789999999999999999999999999998


Q ss_pred             ccccccccccCCCCcHHHHHHHhCCCCCccc
Q 011338          235 KKNSVATNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       235 ~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                      +    +|.+|.+|+||||+|++.|+.++++.
T Consensus       246 d----in~~d~~G~T~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         246 S----VEAVDATDHTARQLAQANNHHNIVDI  272 (277)
T ss_dssp             C----SSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             C----CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            7    79999999999999999999877653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=239.28  Aligned_cols=271  Identities=13%  Similarity=0.048  Sum_probs=184.9

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++++.+.   +|.+|+||||+|+..|+.+++++||+++. .++.+|.+|+||||+|+..|+       ...++
T Consensus        15 ~v~~Ll~~g~~in~---~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-di~~~~~~g~t~L~~A~~~g~-------~~~~~   83 (408)
T d1n11a_          15 IVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARIGH-------TNMVK   83 (408)
T ss_dssp             HHHHHHHTTCCSCC---SSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHHHHHTC-------HHHHH
T ss_pred             HHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCC-------HHHHH
Confidence            47899999876654   78999999999999999999999999954 589999999999999999983       23333


Q ss_pred             HHhhhhhhhhh----------------------------ccccCCCCC----------------------CCCCCCCCCC
Q 011338           81 KWIYSFIYIRS----------------------------AYASNNISH----------------------GDIERPHQGP  110 (488)
Q Consensus        81 ~li~~~~~v~~----------------------------~~~~~~~~~----------------------~~~~~~~~~~  110 (488)
                      .++........                            .........                      ........+.
T Consensus        84 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~  163 (408)
T d1n11a_          84 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK  163 (408)
T ss_dssp             HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence            33321110000                            000000000                      0001112345


Q ss_pred             chhhhhHHHHHHHHHHHHHHHhhccchh-------hhhH-HHHHHhh------------------------------HhH
Q 011338          111 AEHKNFFTRAMTKLLHMVWKSLNLFVPA-------IKHI-YEVKLAH------------------------------VQT  152 (488)
Q Consensus       111 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~-------~~~~-~~~~~~h------------------------------~~~  152 (488)
                      .+.+++|.|+..++.++++.+++.+...       .... ......+                              ...
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            6778888888888888888888765311       0000 0000000                              011


Q ss_pred             HHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          153 QELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       153 ~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      .++++.+.......+   ..+..|.||||.|++.|+.+++++|++.+.+.. ..+..+.||||.|+..++.++++.+++.
T Consensus       244 ~~~~~~~~~~~~~~~---~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~-~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         244 AEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             HHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             HhHhhhhhccccccc---cccCCCCChhhhhhhcCcHHHHHHHHHCCCccc-cccccccccchhhcccCcceeeeeeccc
Confidence            223333333222221   146678899999999999999999999887753 4578889999999999999999999998


Q ss_pred             CCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          233 GAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       233 ~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      |++    +|.+|.+|+||||+|++.|+.++|+.|.                +   ...+.+.+|++|+||++++.+.
T Consensus       320 g~~----in~~d~~G~T~Lh~A~~~g~~~iv~~Ll----------------~---~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         320 QAD----VNAKTKLGYSPLHQAAQQGHTDIVTLLL----------------K---NGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             TCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH----------------H---TTCCSCCCCSSSCCHHHHHHHT
T ss_pred             ccc----ccccCCCCCCHHHHHHHcCCHHHHHHHH----------------H---CCCCCCCCCCCCCCHHHHHHHc
Confidence            876    7999999999999999999876654321                1   2245668899999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-27  Score=217.42  Aligned_cols=186  Identities=12%  Similarity=-0.019  Sum_probs=151.6

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      .+|.+|+||||+|+..|+.|++++|++... .....+..+.+|++.++..|       ..++++.++....++       
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~i~~~Ll~~~~d~-------   96 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAG-------RDEIVKALLGKGAQV-------   96 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CSCCCCTTCCCHHHHHHHHT-------CHHHHHHHHHTTCCT-------
T ss_pred             CcCCCCCCHHHHHHHhhhhccccccccccc-cccccccccccccccccccc-------ccchhHHHhccCcee-------
Confidence            489999999999999999999999999854 45667788999999999998       456777666543221       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI  176 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g  176 (488)
                               ...+..|+||||.|+..++.++++.+++.+                            .+.+.   ++..|
T Consensus        97 ---------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g----------------------------~d~~~---~~~~~  136 (223)
T d1uoha_          97 ---------NAVNQNGCTPLHYAASKNRHEIAVMLLEGG----------------------------ANPDA---KDHYE  136 (223)
T ss_dssp             ---------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCTTC---CCTTS
T ss_pred             ---------EeeCCCCCchhhHHHHcCCHHHHHHHHHCC----------------------------CCCCC---cCCCC
Confidence                     124567899999998887776666665443                            22222   57789


Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .||||+|+..|+.++++.|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|. 
T Consensus       137 ~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----~~~~d~~g~tpl~~A~-  210 (223)
T d1uoha_         137 ATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVAK-  210 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHCC-
T ss_pred             CccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHH-
Confidence            99999999999999999999988774 56799999999999999999999999999987    7999999999999984 


Q ss_pred             hCCCCCc
Q 011338          257 LAPSSQL  263 (488)
Q Consensus       257 ~~~~~~v  263 (488)
                      .|+.+++
T Consensus       211 ~~~~~i~  217 (223)
T d1uoha_         211 GGLGLIL  217 (223)
T ss_dssp             TTHHHHH
T ss_pred             CCCHHHH
Confidence            5665544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-27  Score=219.91  Aligned_cols=192  Identities=9%  Similarity=0.019  Sum_probs=146.8

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHh---CccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQR---YRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~---~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      +|+||||+|+..|+.++++.|++.   .+..++.+|.+|+||||+||..|+       ..+++.++....          
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~-------~~iv~~L~~~g~----------   63 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ-------PEIAEALLGAGC----------   63 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTC-------HHHHHCCCSCCC----------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccc-------cccccccccccc----------
Confidence            699999999999997666655442   356689999999999999999983       334444332211          


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcc
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIK  177 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~  177 (488)
                            +....+..|.+|++.++..+..++++.++..+....                         ..........+|.
T Consensus        64 ------d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~-------------------------~~~~~~~~~~~~~  112 (221)
T d1iknd_          64 ------DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH-------------------------LHSILKATNYNGH  112 (221)
T ss_dssp             ------CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS-------------------------SSCGGGCCCTTCC
T ss_pred             ------cccccccccccccccccccccccccchhhhhccccc-------------------------ccccccccccccc
Confidence                  112245678899999988887777776655432110                         0111111345689


Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHh
Q 011338          178 KVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFL  257 (488)
Q Consensus       178 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~  257 (488)
                      ||||.|+..|+.+++++|+..++......+.+|+||||+|++.|+.+++++|++.|++    ++.+|.+|+||||+|+..
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTS
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHC
Confidence            9999999999999999999999887777678899999999999999999999999987    799999999999999999


Q ss_pred             CCCCCcc
Q 011338          258 APSSQLD  264 (488)
Q Consensus       258 ~~~~~v~  264 (488)
                      ++.++++
T Consensus       189 ~~~~~~~  195 (221)
T d1iknd_         189 PSTRIQQ  195 (221)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            8866553

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.5e-27  Score=213.21  Aligned_cols=215  Identities=9%  Similarity=0.004  Sum_probs=155.4

Q ss_pred             CCchhHHHHHHHcCCccHHHHHHHh---CccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccC
Q 011338           20 TNGAMLLTSCIIDDIFDIPLDLLQR---YRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASN   96 (488)
Q Consensus        20 ~~G~T~LH~A~~~g~~div~~LL~~---~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~   96 (488)
                      ++|+||||+||..|+.++++.|++.   .+..++.+|.+|+||||+|+..|       ...+++.|+......       
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~-------~~~iv~~Ll~~ga~~-------   66 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-------LPSVVRLLVTAGASP-------   66 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-------CHHHHHHHHHTTCCT-------
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccc-------ccccccccccccccc-------
Confidence            4799999999999999999999873   45678899999999999999999       456777776543221       


Q ss_pred             CCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhH-----HHHHHhh----HhHHHHHHHHhhhhcccC
Q 011338           97 NISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHI-----YEVKLAH----VQTQELLSCVCREISTQG  167 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----~~~~~~h----~~~~~il~~l~~~~~~~~  167 (488)
                               ......+.++++.+......++++.............     ......+    .........+........
T Consensus        67 ---------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  137 (228)
T d1k1aa_          67 ---------MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID  137 (228)
T ss_dssp             ---------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             ---------cccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccc
Confidence                     1234566778888888777777766544332110000     0000001    111222233333222211


Q ss_pred             chhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCC
Q 011338          168 ESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAH  247 (488)
Q Consensus       168 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G  247 (488)
                        ...+..|.+|||.|+..+..++++.+++.+.... .+|.+|+||||+|+.+|+.+++++|++.|++    +|.+|.+|
T Consensus       138 --~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad----~n~~d~~G  210 (228)
T d1k1aa_         138 --AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGAD----SSLKNCHN  210 (228)
T ss_dssp             --CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTS
T ss_pred             --cccccchhhHHHHHHHhhhhhhhhhhhhhccccc-cccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCC
Confidence              1245678999999999999999999999877654 5699999999999999999999999999987    79999999


Q ss_pred             CcHHHHHHHhCCCCCcc
Q 011338          248 NNILHQAAFLAPSSQLD  264 (488)
Q Consensus       248 ~TpLhlA~~~~~~~~v~  264 (488)
                      +||||+|++.|+.++|+
T Consensus       211 ~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         211 DTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CCTTTTCSSHHHHHHHT
T ss_pred             CCHHHHHHhCCCccccC
Confidence            99999999998766553

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=1.9e-26  Score=221.31  Aligned_cols=209  Identities=11%  Similarity=-0.003  Sum_probs=146.1

Q ss_pred             CCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCC
Q 011338           19 GTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNI   98 (488)
Q Consensus        19 d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~   98 (488)
                      +.+|.|+||.||..|+.++|++||+++ .+++.+|.+|+||||+|+..|       +.++++.|+..+.+.         
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~G-advn~~d~~G~T~L~~A~~~g-------~~eiv~~Ll~~~~~~---------   99 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDD-------NVDMVKFLVENGANI---------   99 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHC-CCTTCBCTTCCBHHHHHHHTT-------CHHHHHHHHHTTCCT---------
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCcHHHHHHhcC-------Cceeeeeeccccccc---------
Confidence            345789999999999999999999985 458999999999999999999       467788777654321         


Q ss_pred             CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchh-hhhHHHHHHh----hHhHHHHHHHHhhhhccc-Cc----
Q 011338           99 SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPA-IKHIYEVKLA----HVQTQELLSCVCREISTQ-GE----  168 (488)
Q Consensus        99 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~----h~~~~~il~~l~~~~~~~-~~----  168 (488)
                             ......+.+|++.++..++.++++.+++.+... ..........    ..+..+.+..++...... ..    
T Consensus       100 -------~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  172 (291)
T d1s70b_         100 -------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE  172 (291)
T ss_dssp             -------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             -------ccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccc
Confidence                   123456789999999999999999988765321 0000000000    122234444444322110 00    


Q ss_pred             -------------------hhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHH
Q 011338          169 -------------------SQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLI  229 (488)
Q Consensus       169 -------------------~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  229 (488)
                                         ....+..|.||||.|+..|+.++++.|++.+++. +.+|.+|+||||+|++.|+.++|++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lL  251 (291)
T d1s70b_         173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRIL  251 (291)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHH
Confidence                               0012456788888888888888888888877664 44577888888888888888888888


Q ss_pred             HhcCCccccccccccCCCCcHHHHHHH
Q 011338          230 YTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       230 l~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      +++|++    ++.+|++|+||||+|++
T Consensus       252 l~~Gad----v~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         252 VENLCD----MEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHTTCC----TTCCCTTSCCTTTSCCS
T ss_pred             HHCCCC----CCCcCCCCCCHHHHHHH
Confidence            888776    67788888888888864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=6.2e-26  Score=217.72  Aligned_cols=197  Identities=14%  Similarity=0.052  Sum_probs=148.2

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |++|++++++.+.   +|.+|.||||+|+.+|+.|++++|++.+.+ ....+..+.||||+|+..+       ....++.
T Consensus        56 v~~Ll~~Gadvn~---~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~~-------~~~~~~~  124 (291)
T d1s70b_          56 VLRLLERGADINY---ANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCG-------YLDIAEY  124 (291)
T ss_dssp             HHHHHHHCCCTTC---BCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT-------CHHHHHH
T ss_pred             HHHHHHCCCCCCc---cCCCCCcHHHHHHhcCCceeeeeecccccc-ccccccccccccccccccc-------ccchhhc
Confidence            6889999876554   799999999999999999999999998654 6778889999999999998       3455555


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHH----------------
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEV----------------  145 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~----------------  145 (488)
                      ++.....                ....+..+.++++.|+..+..+.+..++.............                
T Consensus       125 l~~~~~~----------------~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T d1s70b_         125 LISQGAH----------------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (291)
T ss_dssp             HHHTTCC----------------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCcc----------------cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccc
Confidence            5533211                11134567788999999999888888876442221111000                


Q ss_pred             ------------HHhh----HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCC
Q 011338          146 ------------KLAH----VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDY  209 (488)
Q Consensus       146 ------------~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~  209 (488)
                                  ...|    .+..++++.|++.+.+++.   ++.+|+||||+|++.|+.++|++|++++++. +.+|.+
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~---~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv-~~~d~~  264 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI---KDYDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNKV  264 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             ccccccccCCCCChhhHHHHcCChhhhcccccceecccc---cccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCC
Confidence                        0001    2346788888888776554   6788999999999999999999999999885 566999


Q ss_pred             CccHHHHHHhcCChhHHHHHHhcC
Q 011338          210 NRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       210 g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      |+||||+|++    +++++|.+..
T Consensus       265 G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         265 GQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             SCCTTTSCCS----GGGHHHHHHH
T ss_pred             CCCHHHHHHH----HHHHHHHHHh
Confidence            9999999975    6788887653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=9.3e-26  Score=212.20  Aligned_cols=196  Identities=13%  Similarity=-0.001  Sum_probs=142.0

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ++++|++.+++....+.+|.+|+||||+||..|+.+++++|++.+ ..++.+|.+|.||||+|+..++       ...++
T Consensus        24 ~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~i~~~d~~g~tpL~~A~~~~~-------~~~~~   95 (255)
T d1oy3d_          24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTALHLACRVRA-------HTCAC   95 (255)
T ss_dssp             HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHHHHHTTTTC-------HHHHH
T ss_pred             HHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc-ccccccccccchhhhhhhccCc-------hHHHH
Confidence            467888887665544458999999999999999999999999985 5588999999999999999883       22333


Q ss_pred             HHhhhhhhhh---------------------hcc----------ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHH
Q 011338           81 KWIYSFIYIR---------------------SAY----------ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVW  129 (488)
Q Consensus        81 ~li~~~~~v~---------------------~~~----------~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  129 (488)
                      .++.......                     ...          ...............+..|.||||.|+..++.++++
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~  175 (255)
T d1oy3d_          96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (255)
T ss_dssp             HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccccccc
Confidence            3222100000                     000          000000001112234567889999998888777777


Q ss_pred             HHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCC
Q 011338          130 KSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDY  209 (488)
Q Consensus       130 ~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~  209 (488)
                      .+++.+.                            ..+.  .++..|.||||+|++.|+.+++++|++++.+. +.+|..
T Consensus       176 ~Ll~~~~----------------------------~~~~--~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~  224 (255)
T d1oy3d_         176 LLRDAGA----------------------------DLNK--PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYG  224 (255)
T ss_dssp             HHHHHTC----------------------------CTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             chhcccc----------------------------cccc--cccccccccccccccccHHHHHHHHHHCCCCC-CCCCCC
Confidence            6665441                            1111  14567999999999999999999999998775 567999


Q ss_pred             CccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          210 NRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       210 g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      |+||||+|+.+++.+++++|+++|++
T Consensus       225 g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         225 GRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=5.3e-26  Score=207.26  Aligned_cols=204  Identities=11%  Similarity=0.004  Sum_probs=147.9

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      ||++|++++++.+.  ..|.+|+||||+||..|+.|++++|++.++ .++.+|..+.||++.++..++.       ....
T Consensus         4 ~v~~Ll~~g~din~--~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~-~~n~~~~~~~~~~~~~~~~~~~-------~~~~   73 (209)
T d1ot8a_           4 VISDLLAQGAELNA--TMDKTGETSLHLAARFARADAAKRLLDAGA-DANSQDNTGRTPLHAAVAADAM-------GVFQ   73 (209)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHCCCCcCc--CcCCCCCCHHHHHHHcCCHHHHHHHHhhcc-cccccccccccccccccccccc-------cccc
Confidence            57899999886543  258899999999999999999999999855 4788999999999999988731       1111


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                      .....           ....    .......+.+..+.+.....                            ......+.
T Consensus        74 ~~~~~-----------~~~~----~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~L~  110 (209)
T d1ot8a_          74 ILLRN-----------RATN----LNARMHDGTTPLILAARLAI----------------------------EGMVEDLI  110 (209)
T ss_dssp             HHHTC-----------TTCC----TTCCCTTCCCHHHHHHHTTC----------------------------TTHHHHHH
T ss_pred             ccccc-----------cccc----cccccccccccccccccccc----------------------------hhhhhhhh
Confidence            11000           0000    00011122333332211111                            12222333


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCcccccc
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~  240 (488)
                      ......+.   ++..|.||||.|+..|..++++.+++.+.+. ...|..|.||||+|+.+|+.+++++|++.|++    +
T Consensus       111 ~~~~~~~~---~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----~  182 (209)
T d1ot8a_         111 TADADINA---ADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFAN----R  182 (209)
T ss_dssp             HTTCCTTC---BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----T
T ss_pred             hhcccccc---cCCCCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHHHCCCC----C
Confidence            33333332   5677999999999999999999999998775 45699999999999999999999999999987    7


Q ss_pred             ccccCCCCcHHHHHHHhCCCCCccc
Q 011338          241 TNWDKAHNNILHQAAFLAPSSQLDR  265 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~~~~~~~v~~  265 (488)
                      +.+|.+|+||||+|++.|+.++|+.
T Consensus       183 n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         183 EITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            8999999999999999999877643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=218.42  Aligned_cols=225  Identities=14%  Similarity=0.064  Sum_probs=166.4

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      +++|++.+.+.+.   .+.+|.+|||+|+..|+.+++++|++.++ .++..+..|.||||+++....       ......
T Consensus       148 v~~ll~~~~~~~~---~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~~~~~~~-------~~~~~~  216 (408)
T d1n11a_         148 AELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQ-------VEVARS  216 (408)
T ss_dssp             HHHHHHTTCCTTC---CCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCCTTCCCHHHHHHHTTC-------HHHHHH
T ss_pred             HHHHHHcCCCCCc---CCCcCchHHHHHHHcCCHHHHHHHHhcCC-cccccCCCCCCcchhhhccch-------hhhhhh
Confidence            4566666655443   56777888888888888888888887744 467777888888888877762       222332


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhh--------hhHHHHHHhhHhHH
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI--------KHIYEVKLAHVQTQ  153 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~--------~~~~~~~~~h~~~~  153 (488)
                      ++....                ........+.|+++.|+..+..++++..+.......        .......   ....
T Consensus       217 l~~~~~----------------~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~---~~~~  277 (408)
T d1n11a_         217 LLQYGG----------------SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ---EGHV  277 (408)
T ss_dssp             HHHTTC----------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH---HTCH
T ss_pred             hhhccc----------------cccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhh---cCcH
Confidence            222110                011234467899999999999999998887653210        1111222   2335


Q ss_pred             HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      ++++.|++.+.+.+.   .+..+.||||.|+..|+.++++.+++.+.+. +.+|.+|+||||+|+++|+.++|++|++.|
T Consensus       278 ~i~~~Ll~~g~~~~~---~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G  353 (408)
T d1n11a_         278 PVADVLIKHGVMVDA---TTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  353 (408)
T ss_dssp             HHHHHHHHHTCCTTC---CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCcccc---ccccccccchhhcccCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            677777777665543   5667899999999999999999999998775 566999999999999999999999999999


Q ss_pred             CccccccccccCCCCcHHHHHHHhCCCCCcc
Q 011338          234 AKKNSVATNWDKAHNNILHQAAFLAPSSQLD  264 (488)
Q Consensus       234 ~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~  264 (488)
                      ++    +|.+|++|+||||+|++.|+.++|+
T Consensus       354 Ad----~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         354 AS----PNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             CC----SCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             CC----CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            87    7999999999999999999977664

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=188.55  Aligned_cols=149  Identities=13%  Similarity=0.097  Sum_probs=123.8

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      |+| ||.||..|+.++|+.||+.++.+++.+|..|+||||+|+..+                                  
T Consensus         3 g~~-L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~----------------------------------   47 (156)
T d1bd8a_           3 GDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS----------------------------------   47 (156)
T ss_dssp             HHH-HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTC----------------------------------
T ss_pred             cHH-HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccccc----------------------------------
Confidence            444 999999999999999999988889999999999999987533                                  


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                                                                         .++++.+++...+.+.   ++.+|.+|++
T Consensus        48 ---------------------------------------------------~~~v~~Ll~~~~~~~~---~~~~~~~~l~   73 (156)
T d1bd8a_          48 ---------------------------------------------------TAIALELLKQGASPNV---QDTSGTSPVH   73 (156)
T ss_dssp             ---------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHHH
T ss_pred             ---------------------------------------------------cccccccccccccccc---cccccccccc
Confidence                                                               1233344444433333   4667999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSS  261 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~  261 (488)
                      .|+..|+.++++.+++.+++. +.+|.+|+||||+|++.|+.+++++|++ +++    ++.+|.+|+||||+|+..|+.+
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~~----~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-ESD----LHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-TSC----TTCCCTTSCCHHHHHHHSCCHH
T ss_pred             ccccccccccccccccccccc-ccccCCCCeeeccccccccccccccccc-ccc----ccccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999998875 4569999999999999999999998884 554    7899999999999999999977


Q ss_pred             Cccc
Q 011338          262 QLDR  265 (488)
Q Consensus       262 ~v~~  265 (488)
                      +++.
T Consensus       148 iv~~  151 (156)
T d1bd8a_         148 LVDI  151 (156)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.6e-24  Score=183.57  Aligned_cols=149  Identities=13%  Similarity=0.085  Sum_probs=120.0

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      +.||||.||+.|+.++|+.||+.+++ .+ .|..|+||||+|+..++       .+                        
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~-------~~------------------------   48 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGH-------FS------------------------   48 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTC-------HH------------------------
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCccccccccccc-------cc------------------------
Confidence            46999999999999999999999764 34 69999999999998872       11                        


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVF  181 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh  181 (488)
                                                                           ++..+........   ..+..+.+++|
T Consensus        49 -----------------------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~   72 (153)
T d1awcb_          49 -----------------------------------------------------TTEVLLRAGVSRD---ARTKVDRTPLH   72 (153)
T ss_dssp             -----------------------------------------------------HHHHHHTTTCCTT---CCCTTCCCHHH
T ss_pred             -----------------------------------------------------ccccccccccccc---ccccccccccc
Confidence                                                                 1111111111111   13445778999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCC
Q 011338          182 IAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSS  261 (488)
Q Consensus       182 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~  261 (488)
                      .++...+.++++.++..+.+.. .+|.+|+||||+|+..|+.+++++|++.|++    ++.+|.+|.||||+|+..|+.+
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad----~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccC----CcccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999888754 5699999999999999999999999999876    7899999999999999999977


Q ss_pred             Ccc
Q 011338          262 QLD  264 (488)
Q Consensus       262 ~v~  264 (488)
                      +++
T Consensus       148 iv~  150 (153)
T d1awcb_         148 LAE  150 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.5e-24  Score=202.42  Aligned_cols=235  Identities=11%  Similarity=0.047  Sum_probs=140.4

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCC----------
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAF----------   70 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~----------   70 (488)
                      +|++|++++++.+.  ..+..|+||||+|+..|+.+++++|++.++. ....+..+.+|.+.|+..+...          
T Consensus        20 ~vk~Ll~~G~din~--~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (285)
T d1wdya_          20 LVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA   96 (285)
T ss_dssp             HHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCcCc--cCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchhhHHHhhcCCccccchhhhhcc
Confidence            35667766655433  2445677777777777777777777666433 3444555556655555443100          


Q ss_pred             ---C-CCchhhHHHHH-hhhhhhhhhccccCCC-----CCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhh
Q 011338           71 ---P-SGTQLAFWKKW-IYSFIYIRSAYASNNI-----SHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIK  140 (488)
Q Consensus        71 ---~-s~~~l~~~~~l-i~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~  140 (488)
                         . .......+... ................     .............|.||||.|+..++.++++.+++.....++
T Consensus        97 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~  176 (285)
T d1wdya_          97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  176 (285)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT
T ss_pred             cccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence               0 00000000000 0000000000000000     000000112344678999999999999999999976433332


Q ss_pred             hHHHHH----------HhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCC
Q 011338          141 HIYEVK----------LAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYN  210 (488)
Q Consensus       141 ~~~~~~----------~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g  210 (488)
                      ..+..+          .......++++.|++.+.+.+.   ++..|.||||+|++.|+.+++++|++.++..++.+|.+|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~---~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G  253 (285)
T d1wdya_         177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC---CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc---cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCC
Confidence            221111          0012345678888887776654   677899999999999999999999987555566779999


Q ss_pred             ccHHHHHHhcCChhHHHHHHhcCCccccccccccC
Q 011338          211 RHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDK  245 (488)
Q Consensus       211 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~  245 (488)
                      +||||+|+++|+.+++++|++.|++    +|.+|.
T Consensus       254 ~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~  284 (285)
T d1wdya_         254 KTALLLAVELKLKKIAELLCKRGAS----TDCGDL  284 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence            9999999999999999999999987    677763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.7e-23  Score=194.85  Aligned_cols=240  Identities=14%  Similarity=0.061  Sum_probs=161.3

Q ss_pred             CchhHHHHHHHcCCccHHHHHHHhCccccccc-cCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338           21 NGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQ-DNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS   99 (488)
Q Consensus        21 ~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~   99 (488)
                      +++|+||.||+.|+.+++++||+++++ ++.+ +..|+||||+|+..|       ..++++.++......          
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~d-in~~~~~~g~tpL~~A~~~~-------~~eiv~~L~~~~~~~----------   65 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMS-------REDIVELLLRHGADP----------   65 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCT----------
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCCCHHHHHHHcC-------CHHHhhhhccccccc----------
Confidence            578999999999999999999999655 5555 457999999999999       456666665432211          


Q ss_pred             CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhh-------hH-HHHHHhhHhHHHHHHHHhhhhcccCc---
Q 011338          100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIK-------HI-YEVKLAHVQTQELLSCVCREISTQGE---  168 (488)
Q Consensus       100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~-------~~-~~~~~~h~~~~~il~~l~~~~~~~~~---  168 (488)
                            ........++.+.+...+..+.....+........       .. .....   +...............+.   
T Consensus        66 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~~~~~~~~~~~~~~  136 (285)
T d1wdya_          66 ------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY---GKVKALKFLYKRGANVNLRRK  136 (285)
T ss_dssp             ------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTTCCCC
T ss_pred             ------cccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh---cchhhhhhhhhhccccccccc
Confidence                  11334556677777777777776666654422211       01 11111   112223333322221110   


Q ss_pred             ----hhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcC----ChhHHHHHHhcCCcccccc
Q 011338          169 ----SQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQR----QEKIFNLIYTMGAKKNSVA  240 (488)
Q Consensus       169 ----~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~----~~~iv~~Ll~~~~~~~~~~  240 (488)
                          ....+..|.||||+|+++|+.+++++|+++.....+..|..|+++++.+...+    ..+++++|++.|++    +
T Consensus       137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~----~  212 (285)
T d1wdya_         137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----V  212 (285)
T ss_dssp             CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----S
T ss_pred             chhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC----C
Confidence                11235679999999999999999999998755445667888988888766544    34688999998876    6


Q ss_pred             ccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          241 TNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       241 ~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                      +.+|.+|+||||.|++.|+.++++.+.                +  ..+.+.+.+|.+|.||++++.+.
T Consensus       213 n~~~~~g~t~L~~a~~~~~~~~v~~lL----------------~--~~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         213 NVRGERGKTPLILAVEKKHLGLVQRLL----------------E--QEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             SCCCTTSCCHHHHHHHTTCHHHHHHHH----------------H--SSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             CccCCCCCCccchhhhcCcHHHHHHHH----------------H--cCCCCCcCCCCCCCCHHHHHHHc
Confidence            889999999999999998855442210                0  12345677889999999988664

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-23  Score=180.07  Aligned_cols=149  Identities=13%  Similarity=0.098  Sum_probs=122.4

Q ss_pred             hHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCC
Q 011338           24 MLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDI  103 (488)
Q Consensus        24 T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~  103 (488)
                      +|||+||..|+.|+|+.|++++. +++.+|.+|.||||+|+ .|+                                   
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~-d~n~~d~~g~TpL~~A~-~~~-----------------------------------   45 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMK-LGN-----------------------------------   45 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCC-SSC-----------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CcCccCCcccccccccc-ccc-----------------------------------
Confidence            89999999999999999999855 57999999999999886 451                                   


Q ss_pred             CCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHH
Q 011338          104 ERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIA  183 (488)
Q Consensus       104 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~A  183 (488)
                                                                       .++++.|++.+.+.+.   ++..|.+|++.+
T Consensus        46 -------------------------------------------------~ei~~~Ll~~~a~~~~---~~~~~~~~l~~~   73 (156)
T d1ihba_          46 -------------------------------------------------PEIARRLLLRGANPDL---KDRTGFAVIHDA   73 (156)
T ss_dssp             -------------------------------------------------HHHHHHHHHTTCCTTC---CCTTSCCHHHHH
T ss_pred             -------------------------------------------------cccccccccccccccc---ccccCccccccc
Confidence                                                             1234444444443332   567789999999


Q ss_pred             HHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCc
Q 011338          184 VKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQL  263 (488)
Q Consensus       184 a~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v  263 (488)
                      +..|+.+.++.|++.+.+. ...|..|.+|||+|+..++.+++++|+++++.   ..+.+|.+|.||||+|++.++.+++
T Consensus        74 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          74 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccccccc---cccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999988774 45689999999999999999999999998753   3689999999999999999987766


Q ss_pred             cc
Q 011338          264 DR  265 (488)
Q Consensus       264 ~~  265 (488)
                      +.
T Consensus       150 ~~  151 (156)
T d1ihba_         150 SL  151 (156)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=9.5e-23  Score=196.99  Aligned_cols=188  Identities=11%  Similarity=0.051  Sum_probs=110.3

Q ss_pred             CCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCC
Q 011338           18 KGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNN   97 (488)
Q Consensus        18 ~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~   97 (488)
                      .|.+|+||||+||..|+.++|++||+.+ .+++.+|..|+||||+||..++.+..+....+++.+ ..+.          
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l-~~~~----------  170 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCL----------  170 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGG----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH-hhhh----------
Confidence            4889999999999999999999999985 568899999999999999877321111111111111 1110          


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHH----H-HHHHHhhhhcccCchhhh
Q 011338           98 ISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQ----E-LLSCVCREISTQGESQFE  172 (488)
Q Consensus        98 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~----~-il~~l~~~~~~~~~~~~~  172 (488)
                          .    ..+..|+|++|.++...                     .........    + ++..+.+.......  ..
T Consensus       171 ----~----~~d~~g~t~lh~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~  219 (301)
T d1sw6a_         171 ----I----LEDSMNRTILHHIIITS---------------------GMTGCSAAAKYYLDILMGWIVKKQNRPIQ--SG  219 (301)
T ss_dssp             ----G----EECTTCCCHHHHHHHHH---------------------TSTTCHHHHHHHHHHHHHHHHHGGGCCEE--EC
T ss_pred             ----h----hcccccCCHHHHHHHHh---------------------CccccHHHHHHHHHHHHHHHHhcCCcchh--cc
Confidence                0    02334567887664321                     001111111    1 22222222211111  12


Q ss_pred             hcCcchHHHHHHHcCcHHHHHH-----HHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCC
Q 011338          173 KVGIKKVVFIAVKHGIVEFITE-----IMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAH  247 (488)
Q Consensus       173 ~~~g~tpLh~Aa~~G~~~~v~~-----Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G  247 (488)
                      ...+.++++.+........+..     ++...   .+.+|.+|+||||+|+++|+.++|++|++.|++    ++.+|++|
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd----~~~~n~~G  292 (301)
T d1sw6a_         220 TNEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFIANKSG  292 (301)
T ss_dssp             ----------------CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC----TTCCCTTS
T ss_pred             cccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCC
Confidence            3345566666555544443332     23332   335699999999999999999999999999987    79999999


Q ss_pred             CcHHHHHH
Q 011338          248 NNILHQAA  255 (488)
Q Consensus       248 ~TpLhlA~  255 (488)
                      .||||+|+
T Consensus       293 ~Tpl~~A~  300 (301)
T d1sw6a_         293 LRPVDFGA  300 (301)
T ss_dssp             CCGGGGTC
T ss_pred             CCHHHHcC
Confidence            99999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-22  Score=187.39  Aligned_cols=182  Identities=12%  Similarity=0.027  Sum_probs=133.0

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      ++++...+...+   .+|.+|+||||+||..|+.+++++|++.+. +++.+|.+|.||||+|+..++       ...++.
T Consensus        22 i~~~~~~~~~in---~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-d~~~~d~~g~t~l~~~~~~~~-------~~~~~~   90 (221)
T d1iknd_          22 IRQVKGDLAFLN---FQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRDFRGNTPLHLACEQGC-------LASVGV   90 (221)
T ss_dssp             CC-----CCCCC---CCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCCTTCCCHHHHHHHHTC-------HHHHHH
T ss_pred             HHHHHhCCCCcc---cCCCCCCccccccccccccccccccccccc-ccccccccccccccccccccc-------ccccch
Confidence            344444444443   378999999999999999999999999854 578999999999999999983       445555


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                      ++..+....          ...........+.+++|.++..++.+++..++..+                          
T Consensus        91 l~~~~~~~~----------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~--------------------------  134 (221)
T d1iknd_          91 LTQSCTTPH----------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG--------------------------  134 (221)
T ss_dssp             HHHSTTTTS----------SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT--------------------------
T ss_pred             hhhhccccc----------ccccccccccccchhhhHHhhcCChhheeeecccC--------------------------
Confidence            554332211          11112223446789999998776666555544332                          


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                        ...+.  ..+.+|.||||+|++.|+.+++++|++++++. +.+|.+|+||||+|+++++.+++++|++...+
T Consensus       135 --~~~~~--~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         135 --ADVNA--QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             --CCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             --ccccc--ccccCCCCccccccccccHHHHHHHHhcCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence              22221  13566999999999999999999999999884 56799999999999999999999999988643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=1.6e-23  Score=206.53  Aligned_cols=228  Identities=11%  Similarity=-0.004  Sum_probs=145.0

Q ss_pred             CCCCCchhHHHHHHHcCCccHHHH---HHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhcc
Q 011338           17 DKGTNGAMLLTSCIIDDIFDIPLD---LLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAY   93 (488)
Q Consensus        17 ~~d~~G~T~LH~A~~~g~~div~~---LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~   93 (488)
                      .+|.+|.||||+|+++||.++++.   |++. +..++.+|.+|+||||+||+.|       ++++++.|+..+.+++.. 
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G-------~~~~v~~Ll~~g~~~~~~-  155 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENG-------HLHVLNRLCELAPTEIMA-  155 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTT-------CHHHHHHHHHSCTTTHHH-
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCC-------CHHHHHHHHHcCCCcccc-
Confidence            467889999999999999988776   4555 6678999999999999999999       578888888654433211 


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhh-HH-HHH--Hhh----HhHHHHHHHHhhhhcc
Q 011338           94 ASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKH-IY-EVK--LAH----VQTQELLSCVCREIST  165 (488)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~-~~~--~~h----~~~~~il~~l~~~~~~  165 (488)
                                   .....|.||||.|+..|+.++++.|++.+...... .. ..+  ..|    .+..++++.|++.+..
T Consensus       156 -------------~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         156 -------------MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             -------------HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             -------------ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence                         12346899999999999999999999887432111 11 100  111    2234555555554433


Q ss_pred             cCchh----hhhcCcchHHHHHHHcCcHHHHHHHHHhCCCce-eecc-------CCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          166 QGESQ----FEKVGIKKVVFIAVKHGIVEFITEIMKHYPDII-WCYD-------DYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       166 ~~~~~----~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~-~~~d-------~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      .+...    .....+.++++.++..+..+....+....++.. ...+       ..+.++||.|+..++.+++++|++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~  302 (346)
T d2ajaa1         223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  302 (346)
T ss_dssp             HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             cchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCc
Confidence            22111    012223345555554444444443333222211 0111       12357889999999999999999886


Q ss_pred             Cccc-cccccccCCCCcHHHHHHHhCCCCCcccc
Q 011338          234 AKKN-SVATNWDKAHNNILHQAAFLAPSSQLDRV  266 (488)
Q Consensus       234 ~~~~-~~~~~~D~~G~TpLhlA~~~~~~~~v~~l  266 (488)
                      .... ...+..+.+|+||||+|++.|+.++++.|
T Consensus       303 ~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         303 GIKALAPTATIPGDANELLRLALRLGNQGACALL  336 (346)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             ChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHH
Confidence            5321 12345667899999999999999988654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=5.7e-22  Score=187.93  Aligned_cols=185  Identities=9%  Similarity=0.033  Sum_probs=122.1

Q ss_pred             cccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhh
Q 011338            6 YRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYS   85 (488)
Q Consensus         6 ~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~   85 (488)
                      +++|++.+.   +|.+|+||||+|+..|+.+++++|++++. +++.+|.+|.||||+|+..++       ......+...
T Consensus        61 l~~Gadvn~---~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga-d~n~~~~~g~t~l~~a~~~~~-------~~~~~~l~~~  129 (277)
T d2fo1e1          61 IAAGADVNA---MDCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYNKSERSALHQAAANRD-------FGMMVYMLNS  129 (277)
T ss_dssp             HHTCCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTCCCHHHHHHHTTC-------HHHHHHHTTS
T ss_pred             HHcCCCccc---cCCCCCeeecccccccccccccccccccc-ccccccccccccccchhhhcc-------hhhhhhhhhc
Confidence            344554443   78999999999999999999999999854 588999999999999999983       2222222111


Q ss_pred             hhhhhhcc----------------------------c---cCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhc
Q 011338           86 FIYIRSAY----------------------------A---SNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNL  134 (488)
Q Consensus        86 ~~~v~~~~----------------------------~---~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  134 (488)
                      ......+.                            .   .................+.|++|.++..++.+..+.++. 
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~-  208 (277)
T d2fo1e1         130 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG-  208 (277)
T ss_dssp             HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH-
T ss_pred             ccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccc-
Confidence            00000000                            0   000000011111223345555655554443333332221 


Q ss_pred             cchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHH
Q 011338          135 FVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIF  214 (488)
Q Consensus       135 ~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~L  214 (488)
                                                ..+...+   .+|..|+||||+|++.|+.+++++|++.+++. +.+|.+|+|||
T Consensus       209 --------------------------~~~~~~~---~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-n~~d~~G~T~L  258 (277)
T d2fo1e1         209 --------------------------EKGSNKD---KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTAR  258 (277)
T ss_dssp             --------------------------HSCCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCCHH
T ss_pred             --------------------------ccccccc---ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCcCCCCCCHH
Confidence                                      1111111   25778999999999999999999999999885 46799999999


Q ss_pred             HHHHhcCChhHHHHHHhc
Q 011338          215 SYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       215 h~A~~~~~~~iv~~Ll~~  232 (488)
                      |+|+++|+.+++++|.+.
T Consensus       259 ~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         259 QLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHh
Confidence            999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.6e-22  Score=182.39  Aligned_cols=207  Identities=10%  Similarity=-0.006  Sum_probs=150.8

Q ss_pred             ChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccc
Q 011338           57 DTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFV  136 (488)
Q Consensus        57 ~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~  136 (488)
                      .||||+||..|       +...++.++...-..               ....+..|+||||.|+..++.++++.+++.+.
T Consensus         1 n~pLh~A~~~g-------~~~~v~~Ll~~~~~~---------------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga   58 (229)
T d1ixva_           1 NYPLHQACMEN-------EFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME   58 (229)
T ss_dssp             CCHHHHHHHHT-------CHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCT
T ss_pred             CHhHHHHHHcC-------CHHHHHHHHHcCCCc---------------ccccCCCCCCHHHHHHHcCCccccchhhhhhc
Confidence            48999999999       456677666432100               11245689999999999999999999998764


Q ss_pred             hh-hh-hHHHH--HHhh----HhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccC
Q 011338          137 PA-IK-HIYEV--KLAH----VQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDD  208 (488)
Q Consensus       137 ~~-~~-~~~~~--~~~h----~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~  208 (488)
                      +- .. .....  ...|    ....++++.+.......+.. ..+..+.||++.++..++.++++.|++.+... ...|.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~  136 (229)
T d1ixva_          59 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDK  136 (229)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhhhhhhhcccc-cccCC
Confidence            21 11 11100  1112    23345666655554433322 24677899999999999999999999987775 45699


Q ss_pred             CCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHHhhcc
Q 011338          209 YNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVESIVQ  288 (488)
Q Consensus       209 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~  288 (488)
                      +|+||||+|+.+|+.+++++|++.+..   .+|.+|.+|+||||+|+..|+.++++.|.                ++  .
T Consensus       137 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~---~in~~d~~g~TpLh~A~~~~~~~~v~~Ll----------------~~--~  195 (229)
T d1ixva_         137 FNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPLFHALAEGHGDAAVLLV----------------EK--Y  195 (229)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHTTTCC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHH----------------HH--H
T ss_pred             CCCCccchhhhcccccccccccccccc---cccccccccCCchhhhcccccHHHHHHHH----------------Hh--c
Confidence            999999999999999999999998643   47999999999999999999866553220                00  1


Q ss_pred             chhHHHhhcCCCCchhhhhH
Q 011338          289 PKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       289 ~~~~~~~n~~G~tp~~l~~~  308 (488)
                      +.+.+.+|++|+||++++.+
T Consensus       196 gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         196 GAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             CCCSCCCCTTSCCTGGGCSC
T ss_pred             CCCCCCcCCCCCCHHHHHhh
Confidence            34567889999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=163.50  Aligned_cols=141  Identities=16%  Similarity=0.102  Sum_probs=115.4

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++.+.+.   +|.+|.||||+|+ .|+.|++++|++.+. +++.++.+|.|||+.++..+.       .    
T Consensus        16 ~v~~Ll~~g~d~n~---~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a-~~~~~~~~~~~~l~~~~~~~~-------~----   79 (156)
T d1ihba_          16 QLTSLLQNNVNVNA---QNGFGRTALQVMK-LGNPEIARRLLLRGA-NPDLKDRTGFAVIHDAARAGF-------L----   79 (156)
T ss_dssp             HHHHHTTSCCCTTC---CCTTSCCHHHHCC-SSCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTC-------H----
T ss_pred             HHHHHHHCCCCcCc---cCCcccccccccc-ccccccccccccccc-ccccccccCcccccccccccc-------c----
Confidence            47899999887655   7999999999886 789999999999855 478899999999999998872       1    


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                                                                                               +....++
T Consensus        80 -------------------------------------------------------------------------~~~~~l~   86 (156)
T d1ihba_          80 -------------------------------------------------------------------------DTLQTLL   86 (156)
T ss_dssp             -------------------------------------------------------------------------HHHHHHH
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     1112222


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      +.....+.   .+..|.+|||+|++.|+.++++.|+++++.....+|.+|+||||+|+++++.+++++|+++|
T Consensus        87 ~~~~~~~~---~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          87 EFQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccc---cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            22222222   46779999999999999999999999998666778999999999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-20  Score=157.20  Aligned_cols=120  Identities=12%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             chhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCC
Q 011338           22 GAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHG  101 (488)
Q Consensus        22 G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~  101 (488)
                      +.++||.|+..|+.|++++|++.+ .+++.+|.+|.||||.|+ .|+                                 
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~---------------------------------   47 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGS---------------------------------   47 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTC---------------------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-ccc---------------------------------
Confidence            468999999999999999999985 558899999999999665 451                                 


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCc-chHH
Q 011338          102 DIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGI-KKVV  180 (488)
Q Consensus       102 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g-~tpL  180 (488)
                                                                         .++++.|++.+.+.+.   ++..| .|||
T Consensus        48 ---------------------------------------------------~~~v~~Ll~~ga~~~~---~~~~~~~~~L   73 (125)
T d1bi7b_          48 ---------------------------------------------------ARVAELLLLHGAEPNC---ADPATLTRPV   73 (125)
T ss_dssp             ---------------------------------------------------HHHHHHHHTTTCCCCC---CCTTTCCCHH
T ss_pred             ---------------------------------------------------cccccccccccccccc---cccccccccc
Confidence                                                               2344455555444433   34444 5799


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHh
Q 011338          181 FIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYT  231 (488)
Q Consensus       181 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  231 (488)
                      |+|++.|+.+++++|++.+++. +.+|.+|+||||+|+++|+.+++++|+.
T Consensus        74 ~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          74 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999998774 4669999999999999999999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=4.1e-21  Score=189.10  Aligned_cols=207  Identities=8%  Similarity=-0.038  Sum_probs=136.7

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCcccccccc--CCCChHHHHHhhCCCCCCCCchhhHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQD--NDGDTAIDMLAQKPSAFPSGTQLAFW   79 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d--~~G~TpLh~Aa~~g~~~~s~~~l~~~   79 (488)
                      ++.|.+.++..+.   +|.+|+||||+||++||.|+|++|++.+++ ++..|  .+|+||||+||+.|       +++++
T Consensus       109 ~~~L~~~~~~in~---~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~~g~t~L~~Aa~~g-------~~~iv  177 (346)
T d2ajaa1         109 LCLLLTSDEIVKV---IQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQAENYHAFRLAAENG-------HLHVL  177 (346)
T ss_dssp             HTTC--CCSSCC-----CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSHHHHHHHHHHHHTT-------CHHHH
T ss_pred             HHHHHhCCCcccc---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccccCCCChhHHHHHHh-------hHHHH
Confidence            3457777766554   789999999999999999999999999664 45554  46999999999999       57888


Q ss_pred             HHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhh-hhHHHHHHhhHhHHHHHH-
Q 011338           80 KKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAI-KHIYEVKLAHVQTQELLS-  157 (488)
Q Consensus        80 ~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~h~~~~~il~-  157 (488)
                      +.|+..+........             ....+.+++|.|+..++.++++.|++.+...- .........|......+. 
T Consensus       178 ~~Ll~~~~~~~~~~~-------------~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         178 NRLCELAPTEATAMI-------------QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHSCGGGHHHHH-------------HHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHHHHcCCccccccc-------------ccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            888865432211100             12346778888999999999999998874321 111111111211111111 


Q ss_pred             ----------HHhhhhcc--cC---ch-hhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCc----eeeccCCCccHHHHH
Q 011338          158 ----------CVCREIST--QG---ES-QFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDI----IWCYDDYNRHIFSYA  217 (488)
Q Consensus       158 ----------~l~~~~~~--~~---~~-~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A  217 (488)
                                .+......  .+   .. ......+.++++.|+..|+.+++++|++.+...    ....+.+|+||||+|
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence                      11100000  00   00 012234578999999999999999999865432    223356799999999


Q ss_pred             HhcCChhHHHHHHhc
Q 011338          218 TLQRQEKIFNLIYTM  232 (488)
Q Consensus       218 ~~~~~~~iv~~Ll~~  232 (488)
                      ++.|+.++|++|++.
T Consensus       325 ~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         325 LRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHTCTTHHHHHTTS
T ss_pred             HHcCcHHHHHHHhCC
Confidence            999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2e-19  Score=163.13  Aligned_cols=211  Identities=14%  Similarity=0.066  Sum_probs=150.5

Q ss_pred             CCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 011338           54 NDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLN  133 (488)
Q Consensus        54 ~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~  133 (488)
                      .+|+||||+||..|       +++.++.++.....-        .    .+....+..|.||||.|+..++.++++.|++
T Consensus         1 ~dG~TpLh~A~~~g-------~~~~v~~Ll~~~~~~--------g----~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~   61 (228)
T d1k1aa_           1 EDGDTPLHIAVVQG-------NLPAVHRLVNLFQQG--------G----RELDIYNNLRQTPLHLAVITTLPSVVRLLVT   61 (228)
T ss_dssp             CTTCCHHHHHHHTT-------CHHHHHHHHHHHHHT--------T----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCccHHHHHHHcC-------CHHHHHHHHHHHHHC--------C----CCCCccCCCCCccceehhccccccccccccc
Confidence            37999999999999       467777776543211        0    0112245678999999999999999999998


Q ss_pred             ccchhh--------hhHHHHHHhhHhHHHHHHHHhhhhccc-CchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCcee
Q 011338          134 LFVPAI--------KHIYEVKLAHVQTQELLSCVCREISTQ-GESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIW  204 (488)
Q Consensus       134 ~~~~~~--------~~~~~~~~~h~~~~~il~~l~~~~~~~-~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~  204 (488)
                      .+....        .........+.   +.++......... ...........+|||.+.........+.|....++...
T Consensus        62 ~ga~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  138 (228)
T d1k1aa_          62 AGASPMALDRHGQTAAHLACEHRSP---TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA  138 (228)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccccccccccccccccccc---cchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccccc
Confidence            764221        11111111122   2222222221111 11112345678999999999999999999998887766


Q ss_pred             eccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhhHHHHhHHHHHH
Q 011338          205 CYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQMQRELQWFKEVE  284 (488)
Q Consensus       205 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~~~~l~~~~~v~  284 (488)
                      ..+..|+++||.|+..+..++++.+++.+..    .+.+|.+|+||||+|+..|+.++++.|                ++
T Consensus       139 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~L----------------l~  198 (228)
T d1k1aa_         139 VDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGRGLLPLVRTL----------------VR  198 (228)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHH----------------HH
T ss_pred             ccccchhhHHHHHHHhhhhhhhhhhhhhccc----cccccccCcchHHHHHHcCCHHHHHHH----------------HH
Confidence            7788999999999999999999999998765    789999999999999999987655322                11


Q ss_pred             hhccchhHHHhhcCCCCchhhhhHH
Q 011338          285 SIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       285 ~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                         .+.+++.+|.+|+||++++.+.
T Consensus       199 ---~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         199 ---SGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             ---TTCCTTCCCTTSCCTTTTCSSH
T ss_pred             ---CCCCCCCCCCCCCCHHHHHHhC
Confidence               1235678899999999998653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.9e-20  Score=158.42  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=108.3

Q ss_pred             cccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHH
Q 011338            2 VRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKK   81 (488)
Q Consensus         2 v~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~   81 (488)
                      |++|+.+... ++ ..+|..|+||||+|+. |+.+++++|++.+. .++..+.+|.+||++++..++             
T Consensus        18 vk~lL~~~~~-~~-n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~~~~~-------------   80 (156)
T d1bd8a_          18 VRRLLHRELV-HP-DALNRFGKTALQVMMF-GSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGF-------------   80 (156)
T ss_dssp             HHHHHHTTCC-CT-TCCCTTSCCHHHHSCT-TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTC-------------
T ss_pred             HHHHHHhCCC-CC-CccCCCCCcccccccc-cccccccccccccc-ccccccccccccccccccccc-------------
Confidence            6777776432 22 2478999999999875 88999999999855 478899999999999999882             


Q ss_pred             HhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhh
Q 011338           82 WIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCR  161 (488)
Q Consensus        82 li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~  161 (488)
                                                                                             .++.+.+++
T Consensus        81 -----------------------------------------------------------------------~~~~~~~l~   89 (156)
T d1bd8a_          81 -----------------------------------------------------------------------LDTLKVLVE   89 (156)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------ccccccccc
Confidence                                                                                   122333334


Q ss_pred             hhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhc
Q 011338          162 EISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTM  232 (488)
Q Consensus       162 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  232 (488)
                      .+...+.   +|.+|.||||+||+.|+.+++++|++ +.+. ..+|.+|+||||+|+++|+.+++++|+++
T Consensus        90 ~~~~~n~---~~~~~~t~L~~A~~~~~~~i~~~L~~-~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          90 HGADVNV---PDGTGALPIHLAVQEGHTAVVSFLAA-ESDL-HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCCSCC---CCTTSCCHHHHHHHHTCHHHHHHHHT-TSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccc---ccCCCCeeeccccccccccccccccc-cccc-cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            3333333   56789999999999999999998884 5554 56699999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.5e-20  Score=153.85  Aligned_cols=94  Identities=15%  Similarity=0.079  Sum_probs=80.1

Q ss_pred             HHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcC
Q 011338          154 ELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMG  233 (488)
Q Consensus       154 ~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  233 (488)
                      ++++.|++.+.+.+.   +|.+|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|
T Consensus        16 ~~v~~Ll~~g~d~n~---~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~G   91 (118)
T d1myoa_          16 DEVKDYVAKGEDVNR---TLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKG   91 (118)
T ss_dssp             HHHHHHHTTTCCCCC---CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCCHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcccc---cccccccccccccccccccccccccccccee-eecccccccchhhhhhcCchhhhhhhhccc
Confidence            344444454444433   6778999999999999999999999998885 456999999999999999999999999999


Q ss_pred             CccccccccccCCCCcHHHHHH
Q 011338          234 AKKNSVATNWDKAHNNILHQAA  255 (488)
Q Consensus       234 ~~~~~~~~~~D~~G~TpLhlA~  255 (488)
                      ++    ++.+|.+|+||||+|.
T Consensus        92 ad----~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          92 AD----KTVKGPDGLTALEATD  109 (118)
T ss_dssp             CC----SSSSSSSTCCCCCTCS
T ss_pred             cc----ceeeCCCCCCHHHHHh
Confidence            87    7999999999999984

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.5e-20  Score=153.68  Aligned_cols=122  Identities=9%  Similarity=0.028  Sum_probs=95.0

Q ss_pred             hhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCC
Q 011338           23 AMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGD  102 (488)
Q Consensus        23 ~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~  102 (488)
                      .++||.||..|+.|+++.|++++. +++.+|.+|+||||+||..|+                                  
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~-d~n~~d~~g~t~Lh~A~~~~~----------------------------------   46 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGH----------------------------------   46 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTC----------------------------------
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCC-Ccccccccccccccccccccc----------------------------------
Confidence            378999999999999999999854 578999999999999998872                                  


Q ss_pred             CCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHH
Q 011338          103 IERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFI  182 (488)
Q Consensus       103 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~  182 (488)
                                                                        .++++.+++.+.+.+.   +|.+|+||||+
T Consensus        47 --------------------------------------------------~~~~~~ll~~g~~~~~---~d~~g~tpLh~   73 (130)
T d1ycsb1          47 --------------------------------------------------TEIVKFLVQFGVNVNA---ADSDGWTPLHC   73 (130)
T ss_dssp             --------------------------------------------------HHHHHHHHHHTCCTTC---CCTTCCCHHHH
T ss_pred             --------------------------------------------------cccccccccccccccc---ccccCcccccc
Confidence                                                              1233344444433333   57789999999


Q ss_pred             HHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHH--HhcCChhHHHHHHhc
Q 011338          183 AVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYA--TLQRQEKIFNLIYTM  232 (488)
Q Consensus       183 Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~~  232 (488)
                      |+..|+.+++++|++++++.....+.+|+|+++++  +++|+.+++++|+..
T Consensus        74 A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          74 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999998876544345688887665  577889999999865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=1.2e-19  Score=164.42  Aligned_cols=197  Identities=14%  Similarity=0.136  Sum_probs=141.3

Q ss_pred             ccHHHHHHHhCcccccc-ccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCCCCCCCCCCCCCchh
Q 011338           35 FDIPLDLLQRYRKLAYA-QDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNISHGDIERPHQGPAEH  113 (488)
Q Consensus        35 ~div~~LL~~~~~~~~~-~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  113 (488)
                      .|+|+.||+++++ ++. .|.+|.||||+||+.|       +.++++.|+.....++                ..+..+.
T Consensus         2 ~~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g-------~~e~v~~Ll~~g~~~n----------------~~~~~~~   57 (209)
T d1ot8a_           2 AQVISDLLAQGAE-LNATMDKTGETSLHLAARFA-------RADAAKRLLDAGADAN----------------SQDNTGR   57 (209)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTT-------CHHHHHHHHHTTCCTT----------------CCCTTSC
T ss_pred             HHHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcC-------CHHHHHHHHhhccccc----------------ccccccc
Confidence            4799999999775 665 6999999999999999       5677887776433221                1233444


Q ss_pred             hhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHH
Q 011338          114 KNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFIT  193 (488)
Q Consensus       114 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~  193 (488)
                      ++.+.++.............                           .   ...........|.++.+.+...+.....+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (209)
T d1ot8a_          58 TPLHAAVAADAMGVFQILLR---------------------------N---RATNLNARMHDGTTPLILAARLAIEGMVE  107 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHT---------------------------C---TTCCTTCCCTTCCCHHHHHHHTTCTTHHH
T ss_pred             cccccccccccccccccccc---------------------------c---cccccccccccccccccccccccchhhhh
Confidence            55554433322211111100                           0   00111113456889999999999999999


Q ss_pred             HHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhh
Q 011338          194 EIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQM  273 (488)
Q Consensus       194 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~  273 (488)
                      .|...+.+. ..+|..|+||||+|+.+++.++++.+++.+.+    ++.+|.+|+||||+|+..|+.++++.|.      
T Consensus       108 ~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~----~~~~d~~g~TpL~~A~~~g~~~~v~~Ll------  176 (209)
T d1ot8a_         108 DLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN----RDAQDDKDETPLFLAAREGSYEASKALL------  176 (209)
T ss_dssp             HHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHH------
T ss_pred             hhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc----ccccccccccccchhccccHHHHHHHHH------
Confidence            999887764 45689999999999999999999999999765    7899999999999999999977654321      


Q ss_pred             HHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhHH
Q 011338          274 QRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSDQ  309 (488)
Q Consensus       274 ~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~~  309 (488)
                                +   ...+.+.+|++|+||++++.+.
T Consensus       177 ----------~---~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         177 ----------D---NFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             ----------H---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ----------H---CCCCCCCcCCCCCCHHHHHHHc
Confidence                      1   1234668899999999998764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.5e-20  Score=152.95  Aligned_cols=89  Identities=11%  Similarity=0.020  Sum_probs=77.6

Q ss_pred             hhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCc-cHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcH
Q 011338          172 EKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNR-HIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNI  250 (488)
Q Consensus       172 ~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  250 (488)
                      +|.+|.||||+|+ .|+.+++++|++.+++.. ..|..|. ||||+|+++|+.+++++|++.|++    ++.+|.+|+||
T Consensus        32 ~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~----~~~~d~~G~T~  105 (125)
T d1bi7b_          32 PNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGAR----LDVRDAWGRLP  105 (125)
T ss_dssp             CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC----SSCCCTTCCCH
T ss_pred             ccccccccccccc-cccccccccccccccccc-cccccccccccccccccccccccccccccccc----cccccCCCCCH
Confidence            5778999999775 799999999999988864 4466665 699999999999999999999876    79999999999


Q ss_pred             HHHHHHhCCCCCcccc
Q 011338          251 LHQAAFLAPSSQLDRV  266 (488)
Q Consensus       251 LhlA~~~~~~~~v~~l  266 (488)
                      ||+|++.|+.++++.|
T Consensus       106 l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_         106 VDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999999998776543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.5e-20  Score=177.34  Aligned_cols=93  Identities=15%  Similarity=-0.010  Sum_probs=46.9

Q ss_pred             HHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHHhCCCCCcccccchHHhh
Q 011338          194 EIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAFLAPSSQLDRVSGAALQM  273 (488)
Q Consensus       194 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~~~~~~~v~~l~~~~l~~  273 (488)
                      .+++.+.......+..+.+++|.+........+..+.... .....+|.+|.+|+||||+|++.|+.++|+.|.      
T Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll------  279 (301)
T d1sw6a_         207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW-IIANMLNAQDSNGDTCLNIAARLGNISIVDALL------  279 (301)
T ss_dssp             HHHHGGGCCEEEC----------------CHHHHHCSHHH-HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHH------
T ss_pred             HHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHH-HHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHH------
Confidence            3334333333333444555555544444433332211000 001237999999999999999999977664331      


Q ss_pred             HHHHhHHHHHHhhccchhHHHhhcCCCCchhhh
Q 011338          274 QRELQWFKEVESIVQPKYKEMVNLHYKTPRALF  306 (488)
Q Consensus       274 ~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~  306 (488)
                                +   ...+.+++|++|+||+|++
T Consensus       280 ----------~---~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         280 ----------D---YGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             ----------H---TTCCTTCCCTTSCCGGGGT
T ss_pred             ----------H---CCCCCCCCCCCCCCHHHHc
Confidence                      1   2345688999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.3e-19  Score=149.39  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=92.9

Q ss_pred             chHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCcHHHHHHH
Q 011338          177 KKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNNILHQAAF  256 (488)
Q Consensus       177 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLhlA~~  256 (488)
                      .|||++|+++|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.|.+    +|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d----in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT----TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce----eeecccccccchhhhhh
Confidence            38999999999999999999998875 56699999999999999999999999999876    79999999999999999


Q ss_pred             hCCCCCcccccchHHhhHHHHhHHHHHHhhccchhHHHhhcCCCCchhhhhH
Q 011338          257 LAPSSQLDRVSGAALQMQRELQWFKEVESIVQPKYKEMVNLHYKTPRALFSD  308 (488)
Q Consensus       257 ~~~~~~v~~l~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~tp~~l~~~  308 (488)
                      .|+.++++.+.                +   ...+.+.+|++|+||++++..
T Consensus        78 ~~~~~~v~~Ll----------------~---~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          78 EGHVSCVKLLL----------------S---KGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTCCHHHHHHH----------------T---TCCCSSSSSSSTCCCCCTCSS
T ss_pred             cCchhhhhhhh----------------c---ccccceeeCCCCCCHHHHHhH
Confidence            99977654321                1   223567889999999998743

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.2e-19  Score=151.34  Aligned_cols=136  Identities=14%  Similarity=0.109  Sum_probs=108.4

Q ss_pred             CcccccccCccccCCCCCCCCchhHHHHHHHcCCccHHHHHHHhCccccccccCCCChHHHHHhhCCCCCCCCchhhHHH
Q 011338            1 MVRYLYRETPIAELDPDKGTNGAMLLTSCIIDDIFDIPLDLLQRYRKLAYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWK   80 (488)
Q Consensus         1 mv~~L~~~~~~~~l~~~~d~~G~T~LH~A~~~g~~div~~LL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~   80 (488)
                      +|++|++++++..    .|..|+||||+|+..++.++++.++...+. ....+..+.+++|.++...+            
T Consensus        17 ~v~~LL~~ga~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------   79 (153)
T d1awcb_          17 EVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH------------   79 (153)
T ss_dssp             HHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC------------
T ss_pred             HHHHHHHcCCCcc----cccCCCcccccccccccccccccccccccc-cccccccccccccccccccc------------
Confidence            4789999887533    588999999999999999999999988554 45667788899998887661            


Q ss_pred             HHhhhhhhhhhccccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHh
Q 011338           81 KWIYSFIYIRSAYASNNISHGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVC  160 (488)
Q Consensus        81 ~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~  160 (488)
                                                                                              .+.++.+.
T Consensus        80 ------------------------------------------------------------------------~~~~~~l~   87 (153)
T d1awcb_          80 ------------------------------------------------------------------------ANIVEVLL   87 (153)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------ceeeeccc
Confidence                                                                                    11222333


Q ss_pred             hhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHH
Q 011338          161 REISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLI  229 (488)
Q Consensus       161 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  229 (488)
                      ..+...+   .+|.+|+||||+|+..|+.+++++|++.+++.. .+|.+|+||||+|+.+|+.+++++|
T Consensus        88 ~~~~~~~---~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          88 KHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCccc---cccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            3322222   267789999999999999999999999988764 5699999999999999999999976

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.8e-18  Score=149.32  Aligned_cols=126  Identities=8%  Similarity=0.018  Sum_probs=98.4

Q ss_pred             HHHHHHHcCCccHHHHHHHhCccc-----cccccCCCChHHHHHhhCCCCCCCCchhhHHHHHhhhhhhhhhccccCCCC
Q 011338           25 LLTSCIIDDIFDIPLDLLQRYRKL-----AYAQDNDGDTAIDMLAQKPSAFPSGTQLAFWKKWIYSFIYIRSAYASNNIS   99 (488)
Q Consensus        25 ~LH~A~~~g~~div~~LL~~~~~~-----~~~~d~~G~TpLh~Aa~~g~~~~s~~~l~~~~~li~~~~~v~~~~~~~~~~   99 (488)
                      .|..|++.++...++.++..+.+.     ....+..|+||||+|++.++.                              
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~------------------------------   58 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR------------------------------   58 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT------------------------------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCC------------------------------
Confidence            445788999999898888875432     122367799999999976510                              


Q ss_pred             CCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhccchhhhhHHHHHHhhHhHHHHHHHHhhhhcccCchhhhhcCcchH
Q 011338          100 HGDIERPHQGPAEHKNFFTRAMTKLLHMVWKSLNLFVPAIKHIYEVKLAHVQTQELLSCVCREISTQGESQFEKVGIKKV  179 (488)
Q Consensus       100 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~h~~~~~il~~l~~~~~~~~~~~~~~~~g~tp  179 (488)
                                                                         +..++++.|++.+.+++.   +|.+|+||
T Consensus        59 ---------------------------------------------------~~~~iv~~Ll~~gadin~---~d~~g~Tp   84 (154)
T d1dcqa1          59 ---------------------------------------------------TSLHIVDFLVQNSGNLDK---QTGKGSTA   84 (154)
T ss_dssp             ---------------------------------------------------TTHHHHHHHHHHCSCTTC---CCTTCCCH
T ss_pred             ---------------------------------------------------CCHHHHHHHHHcCCChhh---hhhhhccc
Confidence                                                               123455666666555544   68889999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCc
Q 011338          180 VFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAK  235 (488)
Q Consensus       180 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  235 (488)
                      ||+||+.|+.+++++|++++++. ..+|.+|+||||+|+++|+.+++++|++.+..
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999998886 45699999999999999999999999987543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5e-18  Score=142.30  Aligned_cols=104  Identities=10%  Similarity=0.016  Sum_probs=82.9

Q ss_pred             HHHHHhhhhcccCchhhhhcCcchHHHHHHHcCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCC
Q 011338          155 LLSCVCREISTQGESQFEKVGIKKVVFIAVKHGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGA  234 (488)
Q Consensus       155 il~~l~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  234 (488)
                      +++.+++.+.+.+.   +|.+|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|+
T Consensus        16 ~v~~Ll~~g~d~n~---~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   91 (130)
T d1ycsb1          16 LVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGA   91 (130)
T ss_dssp             HHHHHTSTTSSCCC---CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCccc---ccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHHHHHHHHHcCC
Confidence            33344444434333   6788999999999999999999999998875 4569999999999999999999999999988


Q ss_pred             cccccccccc-CCCCcHHHHH--HHhCCCCCcccc
Q 011338          235 KKNSVATNWD-KAHNNILHQA--AFLAPSSQLDRV  266 (488)
Q Consensus       235 ~~~~~~~~~D-~~G~TpLhlA--~~~~~~~~v~~l  266 (488)
                      +    ++.+| .+|+||++++  +..|+.++++.|
T Consensus        92 ~----v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          92 A----VFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             C----TTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             C----cccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            7    67665 4688887776  567787777544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.4e-17  Score=142.16  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=79.3

Q ss_pred             hcCcchHHHHHHH---cCcHHHHHHHHHhCCCceeeccCCCccHHHHHHhcCChhHHHHHHhcCCccccccccccCCCCc
Q 011338          173 KVGIKKVVFIAVK---HGIVEFITEIMKHYPDIIWCYDDYNRHIFSYATLQRQEKIFNLIYTMGAKKNSVATNWDKAHNN  249 (488)
Q Consensus       173 ~~~g~tpLh~Aa~---~G~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  249 (488)
                      +..|+||||+|++   .|+.+++++|++.+++. +.+|.+|+||||+|+++|+.+++++|++.|++    ++.+|.+|.|
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~t  116 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS----IEIANESGET  116 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccccccccccccccccccCcc----ccccCCCCCC
Confidence            5679999999997   47899999999999875 56799999999999999999999999999887    7999999999


Q ss_pred             HHHHHHHhCCCCCccc
Q 011338          250 ILHQAAFLAPSSQLDR  265 (488)
Q Consensus       250 pLhlA~~~~~~~~v~~  265 (488)
                      |||+|++.|+.++++.
T Consensus       117 pL~~A~~~~~~~i~~~  132 (154)
T d1dcqa1         117 PLDIAKRLKHEHCEEL  132 (154)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999999999776643