Citrus Sinensis ID: 011347

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Secondary Structure (PSIPRED)
cHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccccccEEEcccccccccccEEEEccccccHHHHHHHHHcccEEEEEEEEEcHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEEcEEEcccccHHHHHHHHHcccccEEcHHHHHHHHHHcccEccccccccccccccccccHHHHcccccccccccccHHHccEEEccHHHHHHHHHHHHHHHHcccccccccccccEHHHcccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEITLQLLEMGFSENQVSLAIEKfgsktpiseLADKIFsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssweekvkpnssrygmqqafnsnpcrsinkvvaqppyffygNVVDVSIDCWVKMSHFLyslepefvnsQYFSALSrregylhnlpttnrfhippeppmtiqdaiphtkkwwpswdtrkhlscinsgtsGISQLCERFEKLLRDsrgvlssqqQRDILHRSEKLNLVWvgayklgpvdpeHIELIlgypsnhtqaAGNSLTARLESLRHCFQTDTLGYHLSVLksmfpggltMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWessgqtgelvqIEDIQALTTKKFESLIHKLgsidfvicqnsvpqipnskqisnskdpkmaaesdnlpdfdfsLYYEFVRVVQRVRSMKR
Flexible Loop (DISEMBL)
MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIfsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSrgvlssqqqrdilhrseklnlVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKgvisietsetnrRILKRwwessgqtgelvqIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Low Complexity Region (SEG)
MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered region (IsUnstruct)
******LLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC****************************************************************************************CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS**V*******DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS**************************DFDFSLYYEFVRVVQR******
Disordered Region (DISOPRED)
*EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL**************************************************S******************************************************************PYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCE****************QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI*************NLPDFDFSLYYEFVRVVQRVRSM**
Disordered Region (DISEMBL)
MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPD*******************KEEYFDDFSNSTSQFQHVDF**********************************RYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR********RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNS************AESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered Region (DISPRO)
MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSR*YDTVKVKTE**********************RPKEEYFDDFSNSTS*FQHVDFQ****************S*FLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
Q9M548	626	DNA (cytosine-5)-methyltr	no	no	0.668	0.520	0.430	7e-79
Q9LXE5	624	DNA (cytosine-5)-methyltr	no	no	0.875	0.684	0.331	9e-73

>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1

 Score =  295 bits (754), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)

Query: 152 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 211
           RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query: 212 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 271
             NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L    
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query: 272 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 329
                 +  QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query: 330 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 389
           +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query: 390 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 449
            NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query: 450 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 488
           +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct: 596 VS-----RVGLEGDQ-----SSLFFEYCRILEVVRARMR 624

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2

 Score =  274 bits (701), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 161/486 (33%), Positives = 249/486 (51%), Gaps = 59/486 (12%)

Query: 3   ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC 62
           I   L++MG+     ++AIE+ G    + E+ D I + Q+      +R +D +     Y 
Sbjct: 194 ILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQM------ARQFDEI-----YA 242

Query: 63  SPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSS 122
            PD   +   MN ++  R                              + P++ + D   
Sbjct: 243 EPD---KKELMNNNKKRRTYT---------------------------ETPRKPNTDQLI 272

Query: 123 SFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSH 182
           S         V PN     M +         I  +   PP+F+Y NV       W K+S 
Sbjct: 273 SLPKEMIGFGV-PNHPGLMMHRPV------PIPDIARGPPFFYYENVAMTPKGVWAKISS 325

Query: 183 FLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDT 242
            LY + PEFV+S++F A +R+ GY+HNLP  NRF I P    TIQ+A P TK+WWPSWD 
Sbjct: 326 HLYDIVPEFVDSKHFCAAARKRGYIHNLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDG 385

Query: 243 RKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPV 302
           R  L+C+ +  +  S+L E+  + L    G      Q+ +++  +K NLVWVG  KL P+
Sbjct: 386 RTKLNCLLTCIAS-SRLTEKIREALERYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPL 444

Query: 303 DPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVF 362
           D + +E +LG+P +HT+  G S T R +SL + FQ DT+ YHLSVLK +FP G+ +LS+F
Sbjct: 445 DADEMEKLLGFPRDHTRGGGISTTDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLF 504

Query: 363 SGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 422
           +GIGG EV LHRL IK+  V+S+E S+ NR IL+ +WE + Q G L + +D+Q L     
Sbjct: 505 TGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTI 564

Query: 423 ESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 482
           E L+ + G  D VI  +     P +     ++  ++    ++      SL++++ R+++ 
Sbjct: 565 ERLMDEYGGFDLVIGGS-----PCNNLAGGNRHHRVGLGGEH-----SSLFFDYCRILEA 614

Query: 483 VRSMKR 488
           VR   R
Sbjct: 615 VRRKAR 620

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
225432124	712	PREDICTED: DNA (cytosine-5)-methyltransf	0.979	0.671	0.569	1e-162
147779004	1960	hypothetical protein VITISV_038412 [Viti	0.979	0.243	0.569	1e-162
341868935	710	domain rearranged methyltransferase [Vit	0.975	0.670	0.565	1e-158
449441506	724	PREDICTED: uncharacterized protein LOC10	0.967	0.651	0.541	1e-150
255556520	678	conserved hypothetical protein [Ricinus	0.961	0.691	0.520	1e-150
449528407	644	PREDICTED: DNA (cytosine-5)-methyltransf	0.965	0.731	0.544	1e-149
224112050	609	DNA methyltransferase [Populus trichocar	0.911	0.730	0.534	1e-145
356564666	729	PREDICTED: DNA (cytosine-5)-methyltransf	0.967	0.647	0.523	1e-140
356519874	702	PREDICTED: DNA (cytosine-5)-methyltransf	0.965	0.670	0.526	1e-140
357479111	1032	DNA (cytosine-5)-methyltransferase DRM2	0.959	0.453	0.513	1e-138

>gi|225432124|ref|XP_002264226.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/511 (56%), Positives = 364/511 (71%), Gaps = 33/511 (6%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTE 60
           M+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S +  T ++   
Sbjct: 210 MDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSA--TFRLNHS 267

Query: 61  YCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRKGKRPKQESLD 119
           +   D  S  + M      R         +++S  + SQ + VD  ++ KGKRPKQESLD
Sbjct: 268 HTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQESLD 327

Query: 120 DSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNSNPCRSINKVV 158
           DSS+++  +W E                     +V    +++GM       PC+S++++V
Sbjct: 328 DSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLV 387

Query: 159 AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHI 218
           A+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+HNLP+ NRFHI
Sbjct: 388 AKPPYFFYGNVTNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIHNLPSENRFHI 447

Query: 219 PPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQ 278
            P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L DSRG+LS +Q
Sbjct: 448 LPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQ 507

Query: 279 QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQT 338
           QRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  RL+SLRHCFQ 
Sbjct: 508 QRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQI 567

Query: 339 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398
           DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E SET R ILK+W
Sbjct: 568 DTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKW 627

Query: 399 WESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKM 458
           W ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN            +S++ KM
Sbjct: 628 WHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC--------TYSSRNSKM 679

Query: 459 AAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 488
            A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 680 VADGDSLTGFDFSLFCEFVRVLHRVRSTMER 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779004|emb|CAN75753.1| hypothetical protein VITISV_038412 [Vitis vinifera]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/511 (56%), Positives = 364/511 (71%), Gaps = 33/511 (6%)

Query: 1    MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTE 60
            M+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S +  T ++   
Sbjct: 1371 MDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSA--TFRLNHS 1428

Query: 61   YCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRKGKRPKQESLD 119
            +   D  S  + M      R         +++S  + SQ + VD  ++ KGKRPKQESLD
Sbjct: 1429 HTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQESLD 1488

Query: 120  DSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNSNPCRSINKVV 158
            DSS+++  +W E                     +V    +++GM       PC+S++++V
Sbjct: 1489 DSSAYIGPTWJEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLV 1548

Query: 159  AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHI 218
            A+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+HNLP+ NRFHI
Sbjct: 1549 AKPPYFFYGNVXNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIHNLPSENRFHI 1608

Query: 219  PPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQ 278
             P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L DSRG+LS +Q
Sbjct: 1609 LPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQ 1668

Query: 279  QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQT 338
            QRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  RL+SLRHCFQ 
Sbjct: 1669 QRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQI 1728

Query: 339  DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398
            DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E SET R ILK+W
Sbjct: 1729 DTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKW 1788

Query: 399  WESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKM 458
            W ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN            +S++ KM
Sbjct: 1789 WHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC--------TYSSRNSKM 1840

Query: 459  AAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 488
             A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 1841 VADGDSLTGFDFSLFCEFVRVLHRVRSTMER 1871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341868935|gb|AEK98591.1| domain rearranged methyltransferase [Vitis amurensis]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/511 (56%), Positives = 361/511 (70%), Gaps = 35/511 (6%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTE 60
           M+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S +  T ++   
Sbjct: 210 MDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSA--TFRLNHS 267

Query: 61  YCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRKGKRPKQESLD 119
           +   D  S  + M      R         +++S  + SQ + VD  ++ KGKRPKQESLD
Sbjct: 268 HTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQESLD 327

Query: 120 DSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNSNPCRSINKVV 158
           DSS+++  +W E                     +V    +++GM       PC+S++++V
Sbjct: 328 DSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLV 387

Query: 159 AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHI 218
           A+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EG  HNLP+ NRFHI
Sbjct: 388 AKPPYFFYGNVSNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEG--HNLPSENRFHI 445

Query: 219 PPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQ 278
            P+PPMTI++ IP+TKKWWPSWDT K LSCI+S TSGISQLC+R  K+L DSRG+LS +Q
Sbjct: 446 LPKPPMTIEEVIPYTKKWWPSWDTIKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQ 505

Query: 279 QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQT 338
           QRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  RL+SLRHCFQ 
Sbjct: 506 QRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQI 565

Query: 339 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 398
           DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E SET R ILK+W
Sbjct: 566 DTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKW 625

Query: 399 WESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKM 458
           W ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN            +S++ KM
Sbjct: 626 WHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC--------TYSSRNSKM 677

Query: 459 AAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 488
            A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 678 VADGDSLTGFDFSLFCEFVRVLHRVRSTMER 708

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441506|ref|XP_004138523.1| PREDICTED: uncharacterized protein LOC101206985 [Cucumis sativus]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/521 (54%), Positives = 346/521 (66%), Gaps = 49/521 (9%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTP------------- 47
           ME TL+LLEMGFSEN+VSLAIEKFGS+T +SELAD I +G+I  D P             
Sbjct: 211 MEKTLRLLEMGFSENEVSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPSSFGIG 270

Query: 48  --RSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQ 105
              +R     KVK E  S  V    R +N     +GKRPKEE  DD  N T++       
Sbjct: 271 GLYTREDYVTKVKAEESSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN----- 325

Query: 106 ENRKGKRPKQESLDDSSSFLDSSW-EEKVKPN--------SSRYGMQQAFN--------- 147
              KGKRPKQE  DD  S     W E KV P+        SSR  + ++ +         
Sbjct: 326 -KHKGKRPKQEYADDLGSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVAKPPCP 384

Query: 148 ---SNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRRE 204
              SNP R++ KVV +PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSALSR E
Sbjct: 385 PLKSNPSRALEKVVTKPPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSALSRTE 444

Query: 205 GYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFE 264
           GY+HNLP  NRFHI P PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QLC+R  
Sbjct: 445 GYVHNLPCENRFHIIPLPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQLCDRLT 503

Query: 265 KLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNS 324
           K L DS G  SS ++RDILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ A +S
Sbjct: 504 KTLTDSGGHPSSHEERDILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQDAESS 563

Query: 325 LTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVIS 384
              RL+ L++CFQTD LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI LK V+S
Sbjct: 564 SIERLQYLKYCFQTDALGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHLKVVVS 623

Query: 385 IETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 444
           +E+S   RRILK+WW SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN     
Sbjct: 624 VESSAAKRRILKKWWHSSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN----- 678

Query: 445 PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 485
           P S+ +S+SK    + +++ +  FDFS++YEFVRV+Q VR+
Sbjct: 679 PCSRCLSSSK-LNQSGDAEGIASFDFSIFYEFVRVLQSVRN 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556520|ref|XP_002519294.1| conserved hypothetical protein [Ricinus communis] gi|223541609|gb|EEF43158.1| conserved hypothetical protein [Ricinus communis]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/521 (52%), Positives = 346/521 (66%), Gaps = 52/521 (9%)

Query: 7   LLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIF--LDTPRSRSYDTVKVKTEYCS- 63
           LL M FS  +V  A+EK G+  P+ E+ D I + Q+    D  R    +    + +YCS 
Sbjct: 162 LLHMNFSAEEVDFAMEKLGTDAPVDEIVDFITAAQVAANFDEERDDELEHDVEQNKYCSR 221

Query: 64  --------------------------------------PDVVSQSRKMNTSETSRGKRPK 85
                                                  + VS+S  +N  E  RGKRPK
Sbjct: 222 HSRMNPSHVARGGESFNMEIRDEQRRDSYGRKKPENLSQEAVSRSSNLNLEEIHRGKRPK 281

Query: 86  EEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQ 144
           +EY + +SN+  Q +H  F+EN + + PK E   DSS   +S+W EEKV    + + + +
Sbjct: 282 QEYTEGYSNT--QDEHFGFEENYEEEGPKPEYTADSSFSFESAWVEEKVDTEITGFRIPR 339

Query: 145 AFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRRE 204
                 C+S++++VA+PPYF YGNV  VS+D W K+S FLY++EPEFVN+Q+FSALSR+E
Sbjct: 340 EPKFKSCKSVDRMVAKPPYFLYGNVATVSLDTWGKISQFLYAVEPEFVNTQFFSALSRKE 399

Query: 205 GYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFE 264
           GY+HNLPT NRFHI P+PPM+I DA+PH KKWWPSWDTRK LS IN  T+G+SQLC+R  
Sbjct: 400 GYVHNLPTENRFHILPKPPMSILDAMPHIKKWWPSWDTRKQLSFINYETNGLSQLCDRLG 459

Query: 265 KLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNS 324
           ++L DSRG++SSQQ+RDILH   KLNLVWVG +K+ P++PEH+ELILGYP NHTQ    S
Sbjct: 460 RMLTDSRGLISSQQKRDILHHCHKLNLVWVGLHKVRPIEPEHLELILGYPLNHTQTTEGS 519

Query: 325 LTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVIS 384
           LT RL +LR+ FQ DTLGYHLSVLKSMFP G+T+LS+FSGIGGAEV LHRLGI +KGV+S
Sbjct: 520 LTERLHALRYSFQIDTLGYHLSVLKSMFPEGITVLSLFSGIGGAEVALHRLGIHMKGVVS 579

Query: 385 IETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 444
           +ETSET R+IL+ WW +SGQTGEL QIEDIQ LTTKK + LI + G  DFVICQ      
Sbjct: 580 VETSETKRKILRMWWRNSGQTGELEQIEDIQKLTTKKIDRLIERFGGFDFVICQ------ 633

Query: 445 PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 485
             S     S +PKM   +D     DFSL+ EFVRV+QRVR+
Sbjct: 634 --SPCTCASGNPKMEQRADARSALDFSLFCEFVRVLQRVRT 672

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528407|ref|XP_004171196.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 284/522 (54%), Positives = 346/522 (66%), Gaps = 51/522 (9%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTP------------- 47
           ME TL+LLEMGFSEN+VSLAIEKFGS+T +SELAD I +G+I  D P             
Sbjct: 131 MEKTLRLLEMGFSENEVSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPSSFGIG 190

Query: 48  ---RSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDF 104
                  Y T KVK E  S  V    R +N     +GKRPKEE  DD  N T++      
Sbjct: 191 GLYTPEDYVT-KVKAEESSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN---- 245

Query: 105 QENRKGKRPKQESLDDSSSFLDSSW-EEKVKPN--------SSRYGMQQAFN-------- 147
               KGKRPKQE  DD  S     W E KV P+        SSR  + ++ +        
Sbjct: 246 --KHKGKRPKQEYADDLGSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVAKPPC 303

Query: 148 ----SNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRR 203
               SNP R++ KVV +PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSALSR 
Sbjct: 304 PPLKSNPSRALEKVVTKPPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSALSRT 363

Query: 204 EGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERF 263
           EGY+HNLP  NRFHI P PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QLC+R 
Sbjct: 364 EGYVHNLPCENRFHIIPLPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQLCDRL 422

Query: 264 EKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGN 323
            K L DS G  SS Q+RDILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ A +
Sbjct: 423 TKTLTDSGGHPSSHQERDILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQDAES 482

Query: 324 SLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVI 383
           S   RL+ L++CFQTD LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI LK V+
Sbjct: 483 SSIERLQYLKYCFQTDALGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHLKVVV 542

Query: 384 SIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 443
           S+E+S   RRILK+WW SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN    
Sbjct: 543 SVESSAAKRRILKKWWHSSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN---- 598

Query: 444 IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 485
            P S+ +S+SK    + +++ +  FDFS++YEFVRV+Q VR+
Sbjct: 599 -PCSRCLSSSK-LNQSGDAEGIASFDFSIFYEFVRVLQSVRN 638

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112050|ref|XP_002316067.1| DNA methyltransferase [Populus trichocarpa] gi|222865107|gb|EEF02238.1| DNA methyltransferase [Populus trichocarpa]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/486 (53%), Positives = 336/486 (69%), Gaps = 41/486 (8%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTE 60
           M+ TL LL MGFSEN+VSLAI+ +                              VK +TE
Sbjct: 162 MDKTLCLLNMGFSENEVSLAIDNW------------------------------VKSETE 191

Query: 61  YCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDD 120
            C  D + QSR MNT ET +GKRP++E+ + +  +  Q +H   +EN  G++PKQE    
Sbjct: 192 DCRRDAILQSRDMNTKETRKGKRPRQEHIEGYQEA--QPRHDSLEENCAGEQPKQEYDYG 249

Query: 121 SSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVK 179
           SSS+ +  W EEKV  +++ +GM + F  NPC+ ++++ A+PPYFFYGNV   S D W K
Sbjct: 250 SSSYFEHEWVEEKVNSDTTTFGMPKPFKCNPCKILDQIAAKPPYFFYGNVATASSDTWGK 309

Query: 180 MSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPS 239
           +S FLY +EPEFV++Q+FSALSRREGY+HNLPT NR HI P+PP+T++D +P TKKWWPS
Sbjct: 310 ISQFLYGIEPEFVDTQFFSALSRREGYIHNLPTENRSHILPKPPITLEDLMPSTKKWWPS 369

Query: 240 WDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKL 299
           WD RK +SC N  +SG SQLC+   ++L DSRG+LS++QQRD+L   + LNL+WVG  KL
Sbjct: 370 WDARKKMSCRNFDSSGSSQLCDMLGRMLDDSRGLLSAEQQRDLLRHCQALNLMWVGPNKL 429

Query: 300 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTML 359
            P++  H+E ILGYP NHT  A   LT R+ SLR+ FQTDTLGYHLSVLKS+FP G+T+L
Sbjct: 430 SPLESAHLEKILGYPLNHTLIADYPLTERMYSLRYSFQTDTLGYHLSVLKSIFPQGITVL 489

Query: 360 SVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT 419
           S+FSGIGGAE+TLHRLGI LKGV+S+ETSETNRR+LKRWW SSGQTG L QIEDI+ LT+
Sbjct: 490 SLFSGIGGAEITLHRLGIHLKGVVSVETSETNRRVLKRWWYSSGQTGRLEQIEDIRKLTS 549

Query: 420 KKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRV 479
              E L+      DFVICQNS  +         SK P + +  ++   FDF+L+ EFVRV
Sbjct: 550 STVERLVENFVCFDFVICQNSFTR--------PSKIPGVGSGLESQHFFDFTLFNEFVRV 601

Query: 480 VQRVRS 485
           +QRVRS
Sbjct: 602 LQRVRS 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564666|ref|XP_003550572.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/506 (52%), Positives = 337/506 (66%), Gaps = 34/506 (6%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD--------------- 45
           M  TLQL EMGFSEN+VS AI+K GS+ PISELA+ IF+ Q  +D               
Sbjct: 234 MAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTTSTYSV 293

Query: 46  ----TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQH 101
                P    Y T +VK E  S +   QS ++N  ET      KEE   D   S    Q+
Sbjct: 294 GIKEEPEMDLYGTAEVKVEDFSNEP-PQSSQVNLEETYNEDMVKEEEGIDAFPSYVSDQY 352

Query: 102 VDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSINKVVAQ 160
           +D  EN +GKRPK E  DDS + L+ SW EE+V    +   M +    NP R ++ V A+
Sbjct: 353 LDVVENGRGKRPKYEHDDDSITCLEPSWVEERVDVVVAE--MSRRPKPNPSRCLSSVAAK 410

Query: 161 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP 220
           PP+F +GNV ++S D W KMS FLY +EPEF N+Q FSAL R EGY+HNLP  NRFHI P
Sbjct: 411 PPFFLFGNVSNISYDSWTKMSKFLYGIEPEFANAQSFSALDRIEGYIHNLPVENRFHILP 470

Query: 221 EPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQR 280
           +PPMTI+DA+P TKKWWP WD+RK LS I   T+GI+Q C+R   +L DS GVL+S+ Q+
Sbjct: 471 KPPMTIEDAMPLTKKWWPPWDSRKQLSSIYCETNGIAQTCDRLGNILADSGGVLTSELQK 530

Query: 281 DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDT 340
           DIL     LNLVW+G +KLGPV+PE +ELILGYP NHT+A+  ++  RL+SL++CFQTDT
Sbjct: 531 DILRYCRGLNLVWIGKFKLGPVEPEQLELILGYPLNHTRASEGNVAERLKSLKYCFQTDT 590

Query: 341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400
           LGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHRLGIK+K V+S+ETSET R+IL+RWW 
Sbjct: 591 LGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLGIKIKVVVSVETSETKRKILERWWR 650

Query: 401 SSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAA 460
            SGQTG LVQ+EDIQ LT+KK E LI K G  D VI QN    + +S+ ++         
Sbjct: 651 QSGQTGTLVQLEDIQKLTSKKLEGLISKFGGFDLVIYQNPCSNL-SSRLLAGV------- 702

Query: 461 ESDNLPDFDFSLYYEFVRVVQRVRSM 486
               LP  +FS++ E VRV+QR+R M
Sbjct: 703 ---GLPALEFSVFCECVRVLQRIRGM 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519874|ref|XP_003528594.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/505 (52%), Positives = 333/505 (65%), Gaps = 34/505 (6%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD--------------- 45
           M  TLQL EMGFSEN+VS AI+K GS+ PISELA+ IF+ Q  +D               
Sbjct: 199 MAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTTSTYSV 258

Query: 46  ----TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQH 101
                P    Y T +VK E  S +   QS ++N  ET      KEE   D   S    Q+
Sbjct: 259 GIKEEPEMDLYGTAEVKVEGFSHEP-PQSSQVNLEETYNDDMVKEEEGIDAFPSNVSDQY 317

Query: 102 VDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSINKVVAQ 160
           +D  EN +GKRPK E  DD  + L+ SW EE+V    +   M +    NP R ++ V A+
Sbjct: 318 LDVVENGRGKRPKYEHDDDPVNCLEPSWVEERVDAVVAE--MSRHPKPNPSRCLSSVAAK 375

Query: 161 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP 220
           PP+F +GNV ++S D W KMS FLY +EPEF N+Q FSA+ R EGY+HNLP  NRFHI P
Sbjct: 376 PPFFLFGNVSNISYDSWTKMSQFLYGIEPEFANAQSFSAMDRIEGYIHNLPVENRFHILP 435

Query: 221 EPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQR 280
           +PPMTI+DA+P TKKWWP WD+RK LS I   T+GI+Q C+R    L DS GVL+S+QQ+
Sbjct: 436 KPPMTIEDAMPQTKKWWPPWDSRKLLSSIYCETNGIAQTCDRLGNFLADSGGVLTSEQQK 495

Query: 281 DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDT 340
           DIL    +LNLVW+G +KLGPV+PE +ELILGYP NHT+A   ++  RL+SL++CFQTDT
Sbjct: 496 DILRYCRRLNLVWIGKFKLGPVEPEQLELILGYPLNHTRATEGNVAERLKSLKYCFQTDT 555

Query: 341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 400
           LGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHRL IK+K V+S+ETSET R+IL++WW 
Sbjct: 556 LGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLAIKIKAVVSVETSETKRKILEKWWR 615

Query: 401 SSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAA 460
            SGQTG LVQIEDIQ LT+KK E LI K G  D VI QN     P S   S     ++ A
Sbjct: 616 QSGQTGTLVQIEDIQKLTSKKLEGLISKFGGFDLVIYQN-----PCSYSSS-----RLQA 665

Query: 461 ESDNLPDFDFSLYYEFVRVVQRVRS 485
               L   DFS++ E VRV+QRVR 
Sbjct: 666 -GVGLSALDFSVFCECVRVLQRVRG 689

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479111|ref|XP_003609841.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula] gi|355510896|gb|AES92038.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/506 (51%), Positives = 338/506 (66%), Gaps = 38/506 (7%)

Query: 1   MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD--------------- 45
           M  TLQL EMGFSEN++S A++K G   PISELA+ IF+ Q  ++               
Sbjct: 237 MAKTLQLFEMGFSENEISSAVDKLGPDVPISELANFIFAEQNGIEYVMEYKYPSGPSYSW 296

Query: 46  ---TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEE-YFDDFSNSTSQFQH 101
                +S  Y T +VK E  S +  SQSR++N  ET  G+R KEE Y D+F +       
Sbjct: 297 IKEEEQSDMYGTAEVKVEDFSHEP-SQSRQVNLGETGTGERVKEEDYIDEFPDDVKP--- 352

Query: 102 VDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQP 161
             F EN + KRPK E  D+S+S LD  W E++  ++    M +   S P RS++ V A+P
Sbjct: 353 -GFMENDRNKRPKYEYDDNSNSSLDPYWVEEMV-DTVVATMSRRNKSTPSRSLSSVAAKP 410

Query: 162 PYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPE 221
           P+F +GNV +++ D W KMS FLY +EPEFVN++ FSAL+R EGY+HNLPT NRF I P+
Sbjct: 411 PFFLFGNVSNITYDSWKKMSQFLYCIEPEFVNTELFSALNRIEGYIHNLPTENRFQILPK 470

Query: 222 PPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRD 281
           PPMTI+DAIP TKKWWP WD+RK L+C    T GI+QLC+R  + L +S G+L+SQQQ+D
Sbjct: 471 PPMTIEDAIPRTKKWWPPWDSRKKLNCNYCETGGITQLCDRLGRALANSGGILTSQQQKD 530

Query: 282 ILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTL 341
           IL     LNLVW G YKLGP++PEH++ ILGYP NHT+     LT RL+ L+H FQTDTL
Sbjct: 531 ILRYCRGLNLVWTGKYKLGPIEPEHLDHILGYPLNHTRTDECDLTERLQLLKHSFQTDTL 590

Query: 342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 401
           GYHLSVLK +FP G+T+LS+FSGIGGAEV LHRLGIK+K ++S+ETS T R+IL++WW S
Sbjct: 591 GYHLSVLKPIFPTGVTLLSIFSGIGGAEVALHRLGIKIKALVSVETSATKRKILEKWWRS 650

Query: 402 SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ-IPNSKQISNSKDPKMAA 460
           SGQ+G LVQIE+IQ LT+KKFE+LI+  G  D VI QN   Q I    Q+          
Sbjct: 651 SGQSGTLVQIEEIQKLTSKKFENLINNFGVFDLVIYQNPCSQPIVRPHQVG--------- 701

Query: 461 ESDNLPDFDFSLYYEFVRVVQRVRSM 486
               L   +FS + E VR++QRVR++
Sbjct: 702 ---GLSAVEFSAFCESVRILQRVRAL 724

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2089075	710	DRM3 "domains rearranged methy	0.801	0.550	0.478	3.5e-107
TAIR|locus:2222627	626	DRM2 "domains rearranged methy	0.668	0.520	0.430	2.2e-78
TAIR|locus:2150991	624	DRM1 "domains rearranged methy	0.663	0.519	0.4	3.3e-71

TAIR|locus:2089075 DRM3 "domains rearranged methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
 Identities = 200/418 (47%), Positives = 267/418 (63%)

Query:    74 NTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEXXXXXXXXXXXXW-EEK 132
             N  ETSRGKRPK+E  D+  N+  + ++  + +  +GKR + E            W +++
Sbjct:   314 NVGETSRGKRPKDE--DE--NAYPE-EYTGYDD--RGKRLRPEDMGDSSSFMETPWMQDE 366

Query:   133 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 192
              K N+  Y           +S+   VA+ PYFFYG + ++S   W K+S FL+ + PE V
Sbjct:   367 WKDNT--YEFPSVMQPRLSQSLGPKVARRPYFFYGQLGELSPSWWSKISGFLFGIHPEHV 424

Query:   193 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 252
             +++  SAL R EGYLHNLPT NRF+  P P +TIQDA+PH + WWP WD RKH    NSG
Sbjct:   425 DTRLCSALRRTEGYLHNLPTVNRFNTLPNPRLTIQDAMPHMRSWWPQWDIRKHF---NSG 481

Query:   253 T-SGISQ---LCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIE 308
             T S +     LCER  + + + +G  + Q Q  IL      NL+W+    L P++PEH+E
Sbjct:   482 TCSNMKDATLLCERIGRRIAECKGKPTQQDQTLILRHCHTSNLIWIAPNILSPLEPEHLE 541

Query:   309 LILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGA 368
              I+GYP NHT   G  L  RL+   +CFQTDTLGYHLSVLKSMFP GLT+LS+FSGIGGA
Sbjct:   542 CIMGYPMNHTNIGGGRLAERLKLFDYCFQTDTLGYHLSVLKSMFPQGLTVLSLFSGIGGA 601

Query:   369 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 428
             E+ L RLGI LKGV+S+E+   +R ILKRWW++SGQTGELVQIE+I++LT K+ E+L+ +
Sbjct:   602 EIALDRLGIHLKGVVSVESCGLSRNILKRWWQTSGQTGELVQIEEIKSLTAKRLETLMQR 661

Query:   429 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 486
              G  DFVICQN    +  SK+ISNS+    A E      FD++L+ EF RV +RVR M
Sbjct:   662 FGGFDFVICQNPSTPLDLSKEISNSE----ACE------FDYTLFNEFARVTKRVRDM 709

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0006306 "DNA methylation" evidence=IMP

TAIR|locus:2222627 DRM2 "domains rearranged methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
 Identities = 146/339 (43%), Positives = 205/339 (60%)

Query:   152 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 211
             RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct:   297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query:   212 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR--D 269
               NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L   +
Sbjct:   357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query:   270 SRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 329
                      QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct:   416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query:   330 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 389
             +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct:   476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query:   390 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 449
              NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct:   536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query:   450 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 488
             +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct:   596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008170 "N-methyltransferase activity" evidence=ISS

GO:0016458 "gene silencing" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2150991 DRM1 "domains rearranged methylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 134/335 (40%), Positives = 201/335 (60%)

Query:   154 INKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 213
             I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  
Sbjct:   297 IPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQ 356

Query:   214 NRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGV 273
             NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G 
Sbjct:   357 NRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGE 415

Query:   274 LSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLR 333
                  Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL 
Sbjct:   416 TPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLG 475

Query:   334 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 393
             + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR 
Sbjct:   476 NSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRN 535

Query:   394 ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS 453
             IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +     P +     +
Sbjct:   536 ILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGN 590

Query:   454 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 488
             +  ++    ++      SL++++ R+++ VR   R
Sbjct:   591 RHHRVGLGGEHS-----SLFFDYCRILEAVRRKAR 620

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.37	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.92
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	99.91
PRK10458	467	DNA cytosine methylase; Provisional	99.89
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.87
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	99.87
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	99.3
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.29
PRK10458	467	DNA cytosine methylase; Provisional	98.69
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.51
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.0
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	98.0
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.71
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.56
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.45
COG2520	341	Predicted methyltransferase [General function pred	97.44
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.42
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.4
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.29
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.28
PHA03412	241	putative methyltransferase; Provisional	97.24
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.21
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.2
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.06
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.03
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.02
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.01
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.96
PHA03411	279	putative methyltransferase; Provisional	96.78
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.74
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.74
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.69
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.67
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.66
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.64
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.61
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.56
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	96.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.5
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.49
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.4
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.4
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.35
PRK14967	223	putative methyltransferase; Provisional	96.33
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.31
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.31
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.3
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.21
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.14
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.13
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.05
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	95.95
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.87
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	95.86
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.75
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	95.74
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.73
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.66
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.65
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.58
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.5
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.45
PRK14968	188	putative methyltransferase; Provisional	95.35
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.32
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	95.3
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.27
COG4123	248	Predicted O-methyltransferase [General function pr	95.19
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	95.14
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.08
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	95.05
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.01
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.99
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	94.92
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.89
COG2890	280	HemK Methylase of polypeptide chain release factor	94.84
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	94.74
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.62
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.56
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.51
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	94.27
PRK11207	197	tellurite resistance protein TehB; Provisional	94.23
PRK07402	196	precorrin-6B methylase; Provisional	94.13
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.1
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	94.09
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	94.08
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.01
KOG2730	263	consensus Methylase [General function prediction o	93.81
KOG2904	328	consensus Predicted methyltransferase [General fun	93.77
PLN02244	340	tocopherol O-methyltransferase	93.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	93.56
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	93.5
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.5
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	93.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.31
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	93.3
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	93.16
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	93.11
PLN02585	315	magnesium protoporphyrin IX methyltransferase	92.96
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	92.55
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	92.53
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	92.37
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	92.17
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	91.87
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	91.81
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	91.72
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	91.71
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	91.71
KOG1227	351	consensus Putative methyltransferase [General func	91.59
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	91.58
PRK12335	287	tellurite resistance protein TehB; Provisional	91.47
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	91.39
PRK05785	226	hypothetical protein; Provisional	91.29
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	91.23
PRK13255	218	thiopurine S-methyltransferase; Reviewed	91.17
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	91.02
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	90.84
PRK10258	251	biotin biosynthesis protein BioC; Provisional	90.79
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	90.73
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	90.72
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	90.65
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	90.33
PLN02233	261	ubiquinone biosynthesis methyltransferase	90.25
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	90.1
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	89.92
PRK10742	250	putative methyltransferase; Provisional	89.65
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	89.58
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	89.47
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	89.46
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	89.42
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	89.35
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	89.34
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	89.27
PLN02672	1082	methionine S-methyltransferase	88.96
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	88.95
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	88.66
COG1041	347	Predicted DNA modification methylase [DNA replicat	88.52
PRK00811	283	spermidine synthase; Provisional	88.47
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	88.19
PRK08317	241	hypothetical protein; Provisional	87.93
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	87.74
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	87.16
PRK06202	232	hypothetical protein; Provisional	87.08
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	86.96
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	86.74
TIGR00438	188	rrmJ cell division protein FtsJ.	86.48
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	85.93
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	85.88
PRK04148	134	hypothetical protein; Provisional	85.88
PLN02336	475	phosphoethanolamine N-methyltransferase	85.68
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	85.26
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	85.22
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	84.94
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	84.64
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	84.4
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	84.11
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	83.89
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	83.75
PRK06922	677	hypothetical protein; Provisional	83.47
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	82.66
PRK13256	226	thiopurine S-methyltransferase; Reviewed	82.18
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	81.84
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	81.68
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	80.53
COG2521	287	Predicted archaeal methyltransferase [General func	80.22
PRK11524	284	putative methyltransferase; Provisional	80.12
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	80.1

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=99.92  E-value=2.4e-25  Score=217.86  Aligned_cols=105  Identities=22%  Similarity=0.396  Sum_probs=87.3

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  435 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV  435 (488)
                      ||||||||||||+++||+++||  ++++++|+|+.|+++|+.+|.       .+..+||++++.+.|+.      ++|||
T Consensus         1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l   65 (335)
T PF00145_consen    1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL   65 (335)
T ss_dssp             EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred             CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence            5899999999999999999995  679999999999999998764       36789999999886642      59999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      +||||||+||.+|+            +.|++|+|+.||++|+|+|++++|+.
T Consensus        66 ~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~~~v~~~~Pk~  105 (335)
T PF00145_consen   66 IGGPPCQGFSIAGK------------RKGFDDPRNSLFFEFLRIVKELKPKY  105 (335)
T ss_dssp             EEE---TTTSTTST------------HHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred             EeccCCceEecccc------------ccccccccchhhHHHHHHHhhccceE
Confidence            99999999998864            24688999999999999999999874

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.91  E-value=4.9e-25  Score=223.76  Aligned_cols=109  Identities=19%  Similarity=0.341  Sum_probs=94.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ..+++|||||||||+++||+++||  ++++++|||+.|+++|+.++     +...++..||.+++.+.+...     ++|
T Consensus         2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~-----~~~~~~~~di~~~~~~~~~~~-----~~D   69 (328)
T COG0270           2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANF-----PHGDIILGDIKELDGEALRKS-----DVD   69 (328)
T ss_pred             CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhC-----CCCceeechHhhcChhhcccc-----CCC
Confidence            468999999999999999999996  57999999999999998754     324467799999998877532     799


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347          434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  486 (488)
Q Consensus       434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~  486 (488)
                      +|+||||||+||.||+            +.|++|+|++||++|+|+|+.++|.
T Consensus        70 vligGpPCQ~FS~aG~------------r~~~~D~R~~L~~~~~r~I~~~~P~  110 (328)
T COG0270          70 VLIGGPPCQDFSIAGK------------RRGYDDPRGSLFLEFIRLIEQLRPK  110 (328)
T ss_pred             EEEeCCCCcchhhcCc------------ccCCcCccceeeHHHHHHHHhhCCC
Confidence            9999999999998865            3578999999999999999999985

>PRK10458 DNA cytosine methylase; Provisional

Probab=99.89  E-value=3.9e-23  Score=219.76  Aligned_cols=126  Identities=17%  Similarity=0.275  Sum_probs=97.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH--------Hh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL  425 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie--------~l  425 (488)
                      .++++|||||||||+++||+++|+  ++|+++|+|+.|++||+.+|..  .+...+..+||++++...+.        ..
T Consensus        87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (467)
T PRK10458         87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH  162 (467)
T ss_pred             CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence            368999999999999999999998  5799999999999999987632  22344567899999854321        11


Q ss_pred             h-hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 011347          426 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       426 ~-~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~-D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      + ...+++|||+||||||+||.+|+.+..    -.|.+.|++ |+|++||++|+|+|++++|.+
T Consensus       163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~----~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~  222 (467)
T PRK10458        163 IRQHIPDHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFECETQGTLFFDVARIIDAKRPAI  222 (467)
T ss_pred             hhccCCCCCEEEEcCCCCccchhcccccc----cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence            1 134689999999999999998763221    012334665 799999999999999999875

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.87  E-value=8.9e-23  Score=202.73  Aligned_cols=106  Identities=19%  Similarity=0.369  Sum_probs=91.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  435 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV  435 (488)
                      ++|+||||||||+++||+++|+  ++++++|+|+.|+++|+.+|.     .. ++.+||++++..++      .+++|+|
T Consensus         1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~------~~~~D~l   66 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDF------IPDIDLL   66 (275)
T ss_pred             CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhc------CCCCCEE
Confidence            5799999999999999999997  569999999999999988653     22 56799999987653      3689999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      +||||||+||.+|+            +.|.+|+|+.||++|+|+|++++|.+
T Consensus        67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~  106 (275)
T cd00315          67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY  106 (275)
T ss_pred             EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence            99999999999865            24678999999999999999999864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=99.87  E-value=1.3e-22  Score=205.17  Aligned_cols=103  Identities=17%  Similarity=0.361  Sum_probs=88.7

Q ss_pred             ccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEe
Q 011347          358 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  437 (488)
Q Consensus       358 VLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIG  437 (488)
                      ||||||||||+++||+++||+  +++++|+|+.|+++|+.++     ++ .++.+||++++.+++       +++|||+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~~~~-------~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISPSDI-------PDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhhhhC-------CCcCEEEe
Confidence            689999999999999999974  6899999999999998754     23 345689999986543       47999999


Q ss_pred             cCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          438 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       438 GpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      |||||+||.+|+            +.|++|+|+.||++|+|+|++++|.+
T Consensus        66 g~PCq~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~P~~  103 (315)
T TIGR00675        66 GFPCQPFSIAGK------------RKGFEDTRGTLFFEIVRILKEKKPKF  103 (315)
T ss_pred             cCCCcccchhcc------------cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence            999999998764            34678999999999999999999864

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=99.30  E-value=3e-12  Score=126.72  Aligned_cols=111  Identities=18%  Similarity=0.320  Sum_probs=95.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ..++|++|+||+||+.++|+.+.|+-.+|+|+|++..|.++|+.     |..+.++...||+.|+.+++..+     ++|
T Consensus         2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~-----N~h~~L~k~~~I~~lt~kefd~l-----~~~   71 (338)
T KOG0919|consen    2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAH-----NYHSNLVKTRNIQSLTVKEFDKL-----QAN   71 (338)
T ss_pred             CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhc-----CcccchhhccccceeeHhhhhhc-----ccc
Confidence            35899999999999999999999999999999999999999965     44456677789999999888765     689


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347          434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  486 (488)
Q Consensus       434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~  486 (488)
                      ++.-.||||+|...|.            +..+.|+|+..|.+.+.+|-+++..
T Consensus        72 m~lMSPpCQPfTRiG~------------q~D~~D~Rs~aflhil~~lP~~q~L  112 (338)
T KOG0919|consen   72 MLLMSPPCQPFTRIGL------------QRDTEDKRSDAFLHILGLLPECQEL  112 (338)
T ss_pred             eEeeCCCCCchhhhcc------------cccccCchhHHHHHHHhhhhhhhhh
Confidence            9999999999995432            3348999999999999999887653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.29  E-value=3.5e-12  Score=127.17  Aligned_cols=157  Identities=13%  Similarity=0.168  Sum_probs=110.2

Q ss_pred             CCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-Cccccccccc-c---cCCCCCCC--CCCCCCC
Q 011347          159 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-H---NLPTTNRF--HIPPEPP  223 (488)
Q Consensus       159 ~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~-h---NLP~~nR~--~~~p~~p  223 (488)
                      .+|.+|++|||..+-.    ..+..|.+.|    |.+++.++||..| .||+|+|.|+ .   .++...-.  |-.+.+.
T Consensus       102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~  181 (275)
T cd00315         102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK  181 (275)
T ss_pred             cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence            4899999999998865    4566676666    6789999999999 7889999995 2   22222111  1112346


Q ss_pred             CcccccccCCCccCCCcCCCcccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCC
Q 011347          224 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD  303 (488)
Q Consensus       224 ~tiqd~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple  303 (488)
                      .|+.|+|     ++..|+.  -..|+++....   ...          .+...            ..-+|..+...+.|+
T Consensus       182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT  229 (275)
T cd00315         182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT  229 (275)
T ss_pred             CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence            8999999     4566776  45677766421   000          10000            001145677899999


Q ss_pred             hhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347          304 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  348 (488)
Q Consensus       304 ~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL  348 (488)
                      +.|+.||+|||++|+..++ +.+++++.+||+..+..++.+...+
T Consensus       230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i  273 (275)
T cd00315         230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI  273 (275)
T ss_pred             HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence            9999999999999998644 8999999999999988877766543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK10458 DNA cytosine methylase; Provisional

Probab=98.69  E-value=1.3e-08  Score=109.22  Aligned_cols=56  Identities=11%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             ccccCCCChhhHHHHhcC--CCCCccccCCChHHHHHhhhhhcccCcchhhhcccccc
Q 011347          296 AYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM  351 (488)
Q Consensus       296 ~~~~~ple~~E~E~i~Gf--P~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~  351 (488)
                      .++++.|||.|+-||+||  |..++....+|.++.||.+|||..|+++..++..|+.+
T Consensus       398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~  455 (467)
T PRK10458        398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPK  455 (467)
T ss_pred             cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            357899999999999999  55566556899999999999999999999888777664

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.51  E-value=2.6e-08  Score=97.93  Aligned_cols=54  Identities=9%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             eecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347          293 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  348 (488)
Q Consensus       293 W~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL  348 (488)
                      .+.+.+.+.|++.|+.||+|||++|..  ..+.+++++.+||+..+.....+...|
T Consensus       280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i  333 (335)
T PF00145_consen  280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAI  333 (335)
T ss_dssp             EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHh
Confidence            356789999999999999999999998  556669999999999888777766554

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.00  E-value=1.6e-05  Score=67.52  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCcc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      |.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.+....... ...++.+|++++.. .+     ..+.+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~-----~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PL-----PDGKFD   72 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TC-----TTT-EE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hc-----cCceeE
Confidence            4689999999999999999998 2 35789999999999988876654321 22356677765531 11     236899


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|++-||.-+.+
T Consensus        73 ~Iv~npP~~~~~   84 (117)
T PF13659_consen   73 LIVTNPPYGPRS   84 (117)
T ss_dssp             EEEE--STTSBT
T ss_pred             EEEECCCCcccc
Confidence            999999986543

...

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=98.00  E-value=1.1e-06  Score=89.51  Aligned_cols=177  Identities=15%  Similarity=0.203  Sum_probs=93.3

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-CcccccccccccCC---CCCCCCCCCC----
Q 011347          158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE----  221 (488)
Q Consensus       158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~hNLP---~~nR~~~~p~----  221 (488)
                      ..+|.+|++|||..+-.    ..+..|-+-|    |.+...++||..| .||+|+|.|+--.-   ....+ ..|.    
T Consensus        98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~-~~p~~~~~  176 (315)
T TIGR00675        98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNF-EFPKPIYV  176 (315)
T ss_pred             hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCC-CCCCCccc
Confidence            45899999999987643    3566666555    6677889999999 99999999876322   11111 1232    


Q ss_pred             -CCCcccccccCCC----ccCCCcCCCcccceeeccC-------Cchh------HHHHHHHHHHhhccCCCchhhhHHHH
Q 011347          222 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSGT-------SGIS------QLCERFEKLLRDSRGVLSSQQQRDIL  283 (488)
Q Consensus       222 -~p~tiqd~lp~~~----~~wp~wd~r~kl~ci~t~~-------~~~~------~l~~~i~~~~~~~~~~~~~~~q~~vl  283 (488)
                       ...||.|++....    .|.++-...+.+..+....       .+..      ......+++..+....  ...+..+.
T Consensus       177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~  254 (315)
T TIGR00675       177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL  254 (315)
T ss_pred             ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence             2567888775321    1111100000000000000       0000      0000000000000000  00000000


Q ss_pred             HhhcccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcc
Q 011347          284 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTL  341 (488)
Q Consensus       284 ~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti  341 (488)
                      ..+. .+.. .-+.+.+.|++.|.-||+|||++|..  ..+.+..++.+||+.-+...
T Consensus       255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~f--~~s~~~~~~qiGNAVPp~la  308 (315)
T TIGR00675       255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFKF--PVSDSQLYKQAGNAVVVPVI  308 (315)
T ss_pred             eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccEe--CCCHHHHHhhhCCcccHHHH
Confidence            0010 0111 23567799999999999999999976  57999999999999755443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.71  E-value=1.7e-05  Score=81.35  Aligned_cols=176  Identities=14%  Similarity=0.157  Sum_probs=97.0

Q ss_pred             cCCCCccccccccccchh---hHHHHhhhhcc----CCceeeeccc-cCcccccccccc-----cCCCCCCCCCCCC---
Q 011347          158 VAQPPYFFYGNVVDVSID---CWVKMSHFLYS----LEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE---  221 (488)
Q Consensus       158 ~~~ppfF~fENV~~~~~~---~w~~Is~fL~~----i~Pe~Vds~~-fsAa~R~RgY~h-----NLP~~nR~~~~p~---  221 (488)
                      ..+|.||++|||..|-..   .|+.|.+-|..    ++..++||++ -.||+|.|-|+.     |+-.+.--. .+.   
T Consensus       106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~  184 (328)
T COG0270         106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG  184 (328)
T ss_pred             hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence            456799999999999886   88888888754    4456677665 478999999999     777775311 111   


Q ss_pred             CCCcccccc-----cCCCccCC-CcCCCcccceeeccCCchhHHHHHHHHH--------Hhhcc----------CCCchh
Q 011347          222 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEKL--------LRDSR----------GVLSSQ  277 (488)
Q Consensus       222 ~p~tiqd~l-----p~~~~~wp-~wd~r~kl~ci~t~~~~~~~l~~~i~~~--------~~~~~----------~~~~~~  277 (488)
                      ...++.+++     +.+..-|. .+...-+.+-+...      ...++...        .....          ..+...
T Consensus       185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t  258 (328)
T COG0270         185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT  258 (328)
T ss_pred             cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence            122222222     11110000 00000000000000      00000000        00000          000000


Q ss_pred             hhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347          278 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  349 (488)
Q Consensus       278 ~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK  349 (488)
                      +    .   ...+-.=+-+..-+.|++.|+-+|+|||+.|...+  |.+..++.+||+..+....++.+-+.
T Consensus       259 ~----~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~  321 (328)
T COG0270         259 V----R---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAIL  321 (328)
T ss_pred             e----e---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHH
Confidence            0    0   01111112355666799999999999999999975  99999999999988877777655443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.56  E-value=0.00011  Score=69.85  Aligned_cols=82  Identities=22%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||||||.|.+.+=.-.-|..  -|+.||.|+.+.++++.+....+... ..++..|...    .+..+......|
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~~~~~~~~~f  115 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLLKLAKKGEKF  115 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHHHHHHCTS-E
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHHhhcccCCCc
Confidence            5788999999999876644455764  58899999999999999887654222 1123333321    122222234689


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |||.--||=
T Consensus       116 DiIflDPPY  124 (183)
T PF03602_consen  116 DIIFLDPPY  124 (183)
T ss_dssp             EEEEE--ST
T ss_pred             eEEEECCCc
Confidence            999999983

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.45  E-value=0.00028  Score=69.95  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=57.4

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+||||+||.|.+.+.+...  |.   .++++|+|+.+.+..+.+....   +..+..+|+.+.-...+      .+.|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~---~~~~~~~D~~~~l~~~~------~~~f  154 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADA---GGTVHEGDLYDALPTAL------RGRV  154 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHc---CCEEEEeechhhcchhc------CCCE
Confidence            458999999999999988654  33   3688999999998888765432   12355677754321111      2579


Q ss_pred             cEEEecCCCCCccc
Q 011347          433 DFVICQNSVPQIPN  446 (488)
Q Consensus       433 DLVIGGpPCQ~FS~  446 (488)
                      |+|+.-|||.+.+.
T Consensus       155 DlVv~NPPy~~~~~  168 (251)
T TIGR03704       155 DILAANAPYVPTDA  168 (251)
T ss_pred             eEEEECCCCCCchh
Confidence            99999999998763

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.44  E-value=0.00023  Score=74.32  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=68.1

Q ss_pred             cccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceeccc
Q 011347          336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI  414 (488)
Q Consensus       336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI  414 (488)
                      |+.-...-+..+++...+ |-+|+|+|||+|-+++-.-+.|-. + |+|+|||+.|.+-++.+-.-+.-.+ ...+++|.
T Consensus       171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~  247 (341)
T COG2520         171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA  247 (341)
T ss_pred             ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence            444444445556655544 899999999999999999999953 4 8999999999999988654222222 22456777


Q ss_pred             cccChhhHHHhhhccCCccEEEecCCC
Q 011347          415 QALTTKKFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       415 ~~L~~~~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      +++...        .+.+|=|+-|-|=
T Consensus       248 rev~~~--------~~~aDrIim~~p~  266 (341)
T COG2520         248 REVAPE--------LGVADRIIMGLPK  266 (341)
T ss_pred             HHhhhc--------cccCCEEEeCCCC
Confidence            766542        2679988888884

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.42  E-value=0.00038  Score=66.38  Aligned_cols=83  Identities=17%  Similarity=0.064  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||||||.|.+.+.+-..|-.  .|++||+++.+.++.+.+....+... ..++.+|+.+.    +..+......+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~  122 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD  122 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence            4568999999999999999888864  48899999999999998776443211 12344555321    11111111237


Q ss_pred             cEEEecCCCC
Q 011347          433 DFVICQNSVP  442 (488)
Q Consensus       433 DLVIGGpPCQ  442 (488)
                      |+|+--||=.
T Consensus       123 dvv~~DPPy~  132 (189)
T TIGR00095       123 NVIYLDPPFF  132 (189)
T ss_pred             eEEEECcCCC
Confidence            8998888753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.40  E-value=0.00036  Score=67.70  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=49.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +..+-+|+|+|||+|.+++-+-+.+ +.+.|+|+|+|+.|.+.++.+-..++-.+.+ +..+|.+++-.         .+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~  168 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG  168 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence            4567899999999999999887733 2356899999999999998866543333332 35677766543         24


Q ss_pred             CccEEEecCCCC
Q 011347          431 SIDFVICQNSVP  442 (488)
Q Consensus       431 ~~DLVIGGpPCQ  442 (488)
                      .+|-|+.+.|=.
T Consensus       169 ~~drvim~lp~~  180 (200)
T PF02475_consen  169 KFDRVIMNLPES  180 (200)
T ss_dssp             -EEEEEE--TSS
T ss_pred             ccCEEEECChHH
Confidence            689999888733

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.29  E-value=0.00034  Score=66.14  Aligned_cols=82  Identities=24%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCC-ccE
Q 011347          357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS-IDF  434 (488)
Q Consensus       357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~-~DL  434 (488)
                      +|||+|||+||=++.|-+.+   ..|++||+|+...+..+.+-.-.. .....++.+|..++-..    +  +... +|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~   72 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV   72 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred             EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence            58999999999999999985   358999999999888876543221 11122445665543211    0  1122 799


Q ss_pred             EEecCCCCCcccc
Q 011347          435 VICQNSVPQIPNS  447 (488)
Q Consensus       435 VIGGpPCQ~FS~a  447 (488)
                      |...||=-+.+..
T Consensus        73 vFlSPPWGGp~Y~   85 (163)
T PF09445_consen   73 VFLSPPWGGPSYS   85 (163)
T ss_dssp             EEE---BSSGGGG
T ss_pred             EEECCCCCCcccc
Confidence            9999998887764

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.28  E-value=0.00068  Score=71.89  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||||||+||+++..-..|-  .-|++||+++.+.+..+.+...++..  ...++.+|+.+.-    ..+....+.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~  293 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK  293 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence            467899999999999887666664  34789999999999998887643321  1224567775432    222212357


Q ss_pred             ccEEEecCCC
Q 011347          432 IDFVICQNSV  441 (488)
Q Consensus       432 ~DLVIGGpPC  441 (488)
                      ||+|+--||+
T Consensus       294 fDlVilDPP~  303 (396)
T PRK15128        294 FDVIVMDPPK  303 (396)
T ss_pred             CCEEEECCCC
Confidence            9999999997

>PHA03412 putative methyltransferase; Provisional

Probab=97.24  E-value=0.00052  Score=68.64  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             CCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcC--C
Q 011347          300 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I  377 (488)
Q Consensus       300 ~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aG--i  377 (488)
                      ++|+-+|.|-++   .||+.. .   .--.+.+|-.|....+++++... . . .+.+|||+.||.|.+.+.+-+.-  -
T Consensus         5 ~~~~~~~~~f~~---~n~~~~-~---~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~   74 (241)
T PHA03412          5 KALTYEEKLFII---ENFHEG-A---FTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA   74 (241)
T ss_pred             ccccHHHHHHHH---hhcccc-c---ccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence            467777877776   477762 1   12235568888888888776422 1 2 36799999999999998876531  0


Q ss_pred             eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347          378 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  445 (488)
Q Consensus       378 ~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  445 (488)
                      +-..|.+||||+.+.+..+.+     .....++..|+.....         .+.||+||+=||=-...
T Consensus        75 ~~~~V~aVEID~~Al~~Ar~n-----~~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         75 KPREIVCVELNHTYYKLGKRI-----VPEATWINADALTTEF---------DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCcEEEEEECCHHHHHHHHhh-----ccCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence            112478999999998887653     2223356677764321         14799999999866543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.21  E-value=0.00089  Score=60.29  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=62.2

Q ss_pred             CCCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+||||-||.|-+...|. +++-..+ ++++|+++.+.+..+......+.....++.+||.++... ++      +.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence            56899999999999999999 5554333 789999999999888765544433344677999887643 32      489


Q ss_pred             cEEEecCCCCCcc
Q 011347          433 DFVICQNSVPQIP  445 (488)
Q Consensus       433 DLVIGGpPCQ~FS  445 (488)
                      |+|+...++..+.
T Consensus        75 D~I~~~~~l~~~~   87 (152)
T PF13847_consen   75 DIIISNGVLHHFP   87 (152)
T ss_dssp             EEEEEESTGGGTS
T ss_pred             eEEEEcCchhhcc
Confidence            9999998884443

...

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.20  E-value=0.0012  Score=63.95  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChhHHH-HHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVT-LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslG-L~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||||||.|.+.+. +.+ |.  .-|++||+++.+.+..+.+....+.....++.+|+.+.    +.   ...+.+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr-~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~f  122 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSR-YA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPH  122 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHc-CC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCc
Confidence            346899999999999985 444 43  24789999999999998877554322223445555321    11   112469


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+--||
T Consensus       123 DlV~~DPP  130 (199)
T PRK10909        123 NVVFVDPP  130 (199)
T ss_pred             eEEEECCC
Confidence            99999999

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.06  E-value=0.0014  Score=66.90  Aligned_cols=81  Identities=22%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +-+|||||||.|.+++.|.+.|-   -|+++|+++.+.+..+.+....+.....++.+|+.++...       ..+.+|+
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence            46899999999999999988774   4789999999998887765433221223455666543211       1246899


Q ss_pred             EEecCCCCCcc
Q 011347          435 VICQNSVPQIP  445 (488)
Q Consensus       435 VIGGpPCQ~FS  445 (488)
                      |+--||+.+..
T Consensus       244 Vv~dPPr~G~~  254 (315)
T PRK03522        244 VLVNPPRRGIG  254 (315)
T ss_pred             EEECCCCCCcc
Confidence            99999977653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.03  E-value=0.0023  Score=59.46  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ..-++|||-||+|-+++.+.+.+-..+ |.++|+++.|....+.+....+-....+...|+.+--         ..+.+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence            457899999999999999999887654 8899999999999988876543222223445553211         125899


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+.-||
T Consensus       101 ~Iv~NPP  107 (170)
T PF05175_consen  101 LIVSNPP  107 (170)
T ss_dssp             EEEE---
T ss_pred             EEEEccc
Confidence            9999999

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.02  E-value=0.0012  Score=69.03  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +-+|||||||+|.+++.+...|-   -|++||+++.+.+..+.+....+.....+..+|+.++...       ..+.+|+
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence            45899999999999998887763   4789999999999988876543222222455666543211       1145899


Q ss_pred             EEecCC
Q 011347          435 VICQNS  440 (488)
Q Consensus       435 VIGGpP  440 (488)
                      |+-=||
T Consensus       304 vi~DPP  309 (374)
T TIGR02085       304 VLVNPP  309 (374)
T ss_pred             EEECCC
Confidence            999998

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.01  E-value=0.0038  Score=63.92  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+|||.|++.+.+...|..   ++++|+|+...+..+.+....+.....+..+|+.++...        .+.+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~---v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~  249 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAK---VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV  249 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCe---EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence            35678999999999998777777753   688999998877666655433322223456777766421        2479


Q ss_pred             cEEEecCCCCCcc
Q 011347          433 DFVICQNSVPQIP  445 (488)
Q Consensus       433 DLVIGGpPCQ~FS  445 (488)
                      |+|+.-|||...+
T Consensus       250 D~Iv~dPPyg~~~  262 (329)
T TIGR01177       250 DAIATDPPYGRST  262 (329)
T ss_pred             CEEEECCCCcCcc
Confidence            9999999986544

This family is found exclusively in the Archaea.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.96  E-value=0.0019  Score=64.39  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||++||.||.++.+..+--+--.|+++|+++...+.++.+....+.....+...|.+++..        ..+.||
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  142 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD  142 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence            467899999999999988755311111478999999998888876654332222233455443321        125699


Q ss_pred             EEEecCCCCCccc
Q 011347          434 FVICQNSVPQIPN  446 (488)
Q Consensus       434 LVIGGpPCQ~FS~  446 (488)
                      .|+--+||.+...
T Consensus       143 ~Vl~D~Pcsg~G~  155 (264)
T TIGR00446       143 AILLDAPCSGEGV  155 (264)
T ss_pred             EEEEcCCCCCCcc
Confidence            9999999986654

>PHA03411 putative methyltransferase; Provisional

Probab=96.78  E-value=0.0028  Score=64.72  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             hhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcce
Q 011347          333 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQ  410 (488)
Q Consensus       333 gnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~  410 (488)
                      |-.|..+.+.++| ++...  .+-+|||++||+|.+.+.+...  +.   .|+++|+++.+.+..+..+     +...++
T Consensus        46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~~---~V~gVDisp~al~~Ar~n~-----~~v~~v  114 (279)
T PHA03411         46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKPE---KIVCVELNPEFARIGKRLL-----PEAEWI  114 (279)
T ss_pred             eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhC-----cCCEEE
Confidence            6677888888877 33332  2358999999999998777443  33   3789999999887776532     223356


Q ss_pred             eccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347          411 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  445 (488)
Q Consensus       411 ~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  445 (488)
                      .+|+.++..         ...||+|++-||-....
T Consensus       115 ~~D~~e~~~---------~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411        115 TSDVFEFES---------NEKFDVVISNPPFGKIN  140 (279)
T ss_pred             ECchhhhcc---------cCCCcEEEEcCCccccC
Confidence            677765431         14699999999887654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.74  E-value=0.0048  Score=65.32  Aligned_cols=83  Identities=12%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||||||+|.+++.|.+.+-   .|+++|+++.+.+..+.+....+.....++.+|+.++    +..+....+.+|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D  364 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD  364 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence            446899999999999999988763   4789999999998888765433322333556776542    111111124589


Q ss_pred             EEEecCCCCC
Q 011347          434 FVICQNSVPQ  443 (488)
Q Consensus       434 LVIGGpPCQ~  443 (488)
                      +|+--||.-+
T Consensus       365 ~vi~dPPr~G  374 (431)
T TIGR00479       365 VLLLDPPRKG  374 (431)
T ss_pred             EEEECcCCCC
Confidence            9999999765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.74  E-value=0.0036  Score=66.92  Aligned_cols=84  Identities=12%  Similarity=0.104  Sum_probs=58.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||++||.||.+..+-++ +-. ..|+++|+++...+..+.+....+.....+..+|..++..         .+.|
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f  319 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP  319 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence            4578999999999988766542 211 2478999999998888876654432222345567665431         1469


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |+|+-.+||.+....
T Consensus       320 D~Vl~D~Pcsg~g~~  334 (445)
T PRK14904        320 DAILLDAPCTGTGVL  334 (445)
T ss_pred             CEEEEcCCCCCcchh
Confidence            999999999888753

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.69  E-value=0.0066  Score=59.44  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+-.         ..+.||
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD  177 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD  177 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence            4578999999999999998876522 347899999999888877654111122234456653211         025799


Q ss_pred             EEEecCCCCCccc
Q 011347          434 FVICQNSVPQIPN  446 (488)
Q Consensus       434 LVIGGpPCQ~FS~  446 (488)
                      +|+.-||+-+.+.
T Consensus       178 ~Iv~npPy~~~~~  190 (275)
T PRK09328        178 LIVSNPPYIPEAD  190 (275)
T ss_pred             EEEECCCcCCcch
Confidence            9999999977653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.67  E-value=0.0038  Score=65.19  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc-------
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK-------  428 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~-------  428 (488)
                      -+|||||||.|++++++.+..   +-|++||+++.+.+..+.+-...+.....++.+|+.++-.    .+..+       
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~~~~~  280 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ----AMNGVREFNRLK  280 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HHhhcccccccc
Confidence            469999999999999988764   3478999999999988876433222122355677755321    11110       


Q ss_pred             -----cCCccEEEecCCC
Q 011347          429 -----LGSIDFVICQNSV  441 (488)
Q Consensus       429 -----~g~~DLVIGGpPC  441 (488)
                           ...+|+|+=-||=
T Consensus       281 ~~~~~~~~~D~v~lDPPR  298 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPR  298 (362)
T ss_pred             cccccCCCCCEEEECCCC
Confidence                 1148999999993

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.66  E-value=0.0049  Score=56.85  Aligned_cols=76  Identities=18%  Similarity=0.066  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||++||.|.++..+.+.+-   .++++|+|+.+...++.+...  .....++.+|+.++....        ..+|
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--------~~~d   79 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--------LQPY   79 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc--------cCCC
Confidence            456899999999999998888763   478999999999888876532  112235667877664211        2589


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|++.+|=+
T Consensus        80 ~vi~n~Py~   88 (169)
T smart00650       80 KVVGNLPYN   88 (169)
T ss_pred             EEEECCCcc
Confidence            999998854

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.64  E-value=0.0077  Score=55.88  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=56.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +-+||||.||.|.++..+...|.   .++++|+++.+.+..+.+.... +....+..+|+.+..          .+.+|+
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~   85 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDV   85 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccE
Confidence            35799999999999999999885   4789999999988877755322 222223456654321          147999


Q ss_pred             EEecCCCCCcc
Q 011347          435 VICQNSVPQIP  445 (488)
Q Consensus       435 VIGGpPCQ~FS  445 (488)
                      |+..+|+...+
T Consensus        86 Vi~n~p~~~~~   96 (179)
T TIGR00537        86 ILFNPPYLPLE   96 (179)
T ss_pred             EEECCCCCCCc
Confidence            99999997665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.61  E-value=0.0068  Score=58.67  Aligned_cols=100  Identities=22%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             ChHHHH-HhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347          324 SLTARL-ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  402 (488)
Q Consensus       324 ~~teR~-k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~  402 (488)
                      ..++|. .+|-|.            |.+.+-.+-++||||||.|++.+=.-.-|.  .-++.||.|..+..+++.|-...
T Consensus        24 PT~drVREalFNi------------l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l   89 (187)
T COG0742          24 PTTDRVREALFNI------------LAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL   89 (187)
T ss_pred             CCchHHHHHHHHh------------ccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh
Confidence            556777 344444            433233678899999999987543334455  34788999999999999876544


Q ss_pred             CCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347          403 GQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       403 n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      +..+ ..++..|..     ....-....+.||+|.==||=.
T Consensus        90 ~~~~~~~~~~~da~-----~~L~~~~~~~~FDlVflDPPy~  125 (187)
T COG0742          90 GLEGEARVLRNDAL-----RALKQLGTREPFDLVFLDPPYA  125 (187)
T ss_pred             CCccceEEEeecHH-----HHHHhcCCCCcccEEEeCCCCc
Confidence            3112 112333332     1111112234599999999976

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.56  E-value=0.0061  Score=64.84  Aligned_cols=84  Identities=12%  Similarity=0.162  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||++||.||.+..+.+++-. ..|+++|+++......+.+....+.. ..++.+|+.++...     . ..+.||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-----~-~~~~fD  315 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-----W-DGQPFD  315 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-----c-ccCCCC
Confidence            4678999999999999888776522 25789999999998888876543322 23556777754320     0 124699


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+-.+||.+..
T Consensus       316 ~Vl~D~Pcs~~G  327 (427)
T PRK10901        316 RILLDAPCSATG  327 (427)
T ss_pred             EEEECCCCCccc
Confidence            999999998754

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=96.52  E-value=0.0074  Score=64.45  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||||||.|.+++.|.+.+.   .|+++|+++.+.+..+.+-...+.....++.+|+.+.-.+    +....+.||
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~----~~~~~~~fD  369 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD----QPWALGGFD  369 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh----hhhhcCCCC
Confidence            456899999999999999988763   4789999999998887755332222233556777543211    000114699


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+--||+.+..
T Consensus       370 ~Vi~dPPr~g~~  381 (443)
T PRK13168        370 KVLLDPPRAGAA  381 (443)
T ss_pred             EEEECcCCcChH
Confidence            999999987654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.50  E-value=0.0069  Score=68.53  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ++-+|||||||.||+++.+-..|..  .|++||+++.+.+..+.+...++..  ...++.+|+.+.    ++.   ..+.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~  608 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ  608 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence            4678999999999999999998863  4889999999999998877543221  122445665432    111   1257


Q ss_pred             ccEEEecCCCCCc
Q 011347          432 IDFVICQNSVPQI  444 (488)
Q Consensus       432 ~DLVIGGpPCQ~F  444 (488)
                      ||+||-=||.-.-
T Consensus       609 fDlIilDPP~f~~  621 (702)
T PRK11783        609 FDLIFIDPPTFSN  621 (702)
T ss_pred             cCEEEECCCCCCC
Confidence            9999999997543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.49  E-value=0.007  Score=64.55  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=59.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||++||.||.++.+.++ |=. ..++++|+++...+..+.+....+.....+..+|+.++.. .+      .+.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f  321 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF  321 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence            4568999999999999887653 211 2478999999998888876654432223345677765431 11      1479


Q ss_pred             cEEEecCCCCCccc
Q 011347          433 DFVICQNSVPQIPN  446 (488)
Q Consensus       433 DLVIGGpPCQ~FS~  446 (488)
                      |+|+-.+||.++..
T Consensus       322 D~Vl~D~Pcsg~G~  335 (444)
T PRK14902        322 DKILVDAPCSGLGV  335 (444)
T ss_pred             CEEEEcCCCCCCee
Confidence            99999999987654

>smart00165 UBA Ubiquitin associated domain

Probab=96.40  E-value=0.0045  Score=43.87  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=28.0

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhh
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI   37 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i   37 (488)
                      +++.+|++|||+++++..|+.+|+-|  ++.-++.+
T Consensus         3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L   36 (37)
T smart00165        3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYL   36 (37)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHH
Confidence            45689999999999999999999987  55555544

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.40  E-value=0.01  Score=57.83  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|+||=||+|=+++|..-+|-  .-|++||+|+.+..+.+.+-.. ..-...+...||+++.           +.+|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----------~~~d  110 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----------GKFD  110 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----------Cccc
Confidence            456799999999999999999996  4589999999999999986543 1111335567777665           5789


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      .+|--||
T Consensus       111 tvimNPP  117 (198)
T COG2263         111 TVIMNPP  117 (198)
T ss_pred             eEEECCC
Confidence            9999887

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.35  E-value=0.0094  Score=63.54  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||++||.||.+..+.++.-.--.|+++|+++...+.++.+....+.....+..+|..++....    ....+.||
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD  327 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD  327 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence            46789999999999998877641111247899999998888877655443323334556766553110    00124799


Q ss_pred             EEEecCCCCCccc
Q 011347          434 FVICQNSVPQIPN  446 (488)
Q Consensus       434 LVIGGpPCQ~FS~  446 (488)
                      .|+-.+||.+...
T Consensus       328 ~Vl~DaPCSg~G~  340 (434)
T PRK14901        328 RILLDAPCSGLGT  340 (434)
T ss_pred             EEEEeCCCCcccc
Confidence            9999999988544

>PRK14967 putative methyltransferase; Provisional

Probab=96.33  E-value=0.0086  Score=57.76  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=53.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||++||.|.+.+.+.+.|.  ..++++|+++.+.+..+.+....+ ....++.+|+.+.-         ..+.||
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~~---------~~~~fD  103 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARAV---------EFRPFD  103 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhhc---------cCCCee
Confidence            456899999999999998888875  347899999998877766543221 12224445554321         125799


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+..||-.
T Consensus       104 ~Vi~npPy~  112 (223)
T PRK14967        104 VVVSNPPYV  112 (223)
T ss_pred             EEEECCCCC
Confidence            999998744

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.31  E-value=0.011  Score=46.26  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347          357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  436 (488)
Q Consensus       357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI  436 (488)
                      +++|+.||.|++...+-+.+  ...++++|+++.+....+............+...|+.+...       ...+++|+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence            57999999999998887733  24578999999987766532111111122234466655432       1236899999


Q ss_pred             ecCCCCCc
Q 011347          437 CQNSVPQI  444 (488)
Q Consensus       437 GGpPCQ~F  444 (488)
                      ..+||..+
T Consensus        72 ~~~~~~~~   79 (107)
T cd02440          72 SDPPLHHL   79 (107)
T ss_pred             Eccceeeh
Confidence            99998864

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.31  E-value=0.0099  Score=57.07  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+...+....-. ..++++|+++.+.+..+.+....+.....+..+|+.+.-         ..+.+|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence            4568999999999999988876312 247899999999888877654432222234556654311         125799


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+.-||+...+
T Consensus       157 ~Vi~npPy~~~~  168 (251)
T TIGR03534       157 LIVSNPPYIPEA  168 (251)
T ss_pred             EEEECCCCCchh
Confidence            999999988765

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.30  E-value=0.0059  Score=65.69  Aligned_cols=79  Identities=19%  Similarity=0.216  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|+|||||+|+|++.|-+..   +-|.++|+++.+....+.+-..++-.+..++.+|..++...-.     ....+|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----~~~~~d  364 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----EGYKPD  364 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----ccCCCC
Confidence            44789999999999999998655   4578999999999988876433222223334454444332211     113678


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+==||
T Consensus       365 ~VvvDPP  371 (432)
T COG2265         365 VVVVDPP  371 (432)
T ss_pred             EEEECCC
Confidence            8887776

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.21  E-value=0.0068  Score=63.18  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=45.8

Q ss_pred             cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh-----hHHHhh---hc
Q 011347          357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----KFESLI---HK  428 (488)
Q Consensus       357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~-----~Ie~l~---~~  428 (488)
                      ++||||||+|.+++.|-..+   +-|++||+++.+.+..+.+-...+-.+..+...|..++...     ++..+.   ..
T Consensus       199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            79999999999999997765   45899999999988777765433322333444444444321     111000   01


Q ss_pred             cCCccEEEecCC
Q 011347          429 LGSIDFVICQNS  440 (488)
Q Consensus       429 ~g~~DLVIGGpP  440 (488)
                      ...+|+|+==||
T Consensus       276 ~~~~d~vilDPP  287 (352)
T PF05958_consen  276 SFKFDAVILDPP  287 (352)
T ss_dssp             CTTESEEEE---
T ss_pred             hcCCCEEEEcCC
Confidence            126799987777

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.14  E-value=0.014  Score=62.38  Aligned_cols=86  Identities=14%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||++||.||.+..+..+ |-. -.|+++|+++...+.++.+....+.....+...|.+++..     ..  .+.|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~~--~~~f  308 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----YV--QDTF  308 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----hh--hccC
Confidence            4568999999999998877654 111 2478999999999998887654432222244566655431     11  2469


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |.|+-=+||.++...
T Consensus       309 D~Vl~DaPCsg~G~~  323 (431)
T PRK14903        309 DRILVDAPCTSLGTA  323 (431)
T ss_pred             CEEEECCCCCCCccc
Confidence            999999999888653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.13  E-value=0.018  Score=59.09  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      .+|||+.||.|.+++.+....-. ..|+++|+++.+.+..+.+....+... ..++.+|+.+.    +.     .+.||+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l~-----~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----LP-----GRRYDL  204 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----CC-----CCCccE
Confidence            58999999999999998775322 247899999999998887654332111 22445665321    10     136999


Q ss_pred             EEecCCCCCcc
Q 011347          435 VICQNSVPQIP  445 (488)
Q Consensus       435 VIGGpPCQ~FS  445 (488)
                      |+.-||+-+..
T Consensus       205 IvsNPPyi~~~  215 (307)
T PRK11805        205 IVSNPPYVDAE  215 (307)
T ss_pred             EEECCCCCCcc
Confidence            99999987654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.05  E-value=0.019  Score=57.98  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCcc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ..+|||++||.|.+.+.+.+..-.. .++++|+++.+.+..+.+....+... ..+..+|+.+-    +     ..+.||
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD  191 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD  191 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence            4689999999999999998764222 47899999999988887654332211 12445665321    1     113699


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+.-||+-+.+
T Consensus       192 ~Iv~NPPy~~~~  203 (284)
T TIGR03533       192 LIVSNPPYVDAE  203 (284)
T ss_pred             EEEECCCCCCcc
Confidence            999999997655

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=95.95  E-value=0.011  Score=61.74  Aligned_cols=83  Identities=8%  Similarity=0.061  Sum_probs=54.0

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH--h--hhc---
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK---  428 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~--l--~~~---  428 (488)
                      -+|||||||.|.+++.|.+..   +-|++||+++.+.+..+.+....+-....++.+|+.++-......  +  ...   
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            369999999999999988764   248899999999999988765432222234556765543211000  0  000   


Q ss_pred             -cCCccEEEecCCC
Q 011347          429 -LGSIDFVICQNSV  441 (488)
Q Consensus       429 -~g~~DLVIGGpPC  441 (488)
                       ...+|+|+=-||=
T Consensus       276 ~~~~~d~v~lDPPR  289 (353)
T TIGR02143       276 KSYNCSTIFVDPPR  289 (353)
T ss_pred             ccCCCCEEEECCCC
Confidence             0137999999993

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.87  E-value=0.015  Score=61.46  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=51.0

Q ss_pred             CCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          355 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      +.+|||+|||+|.+++-+. .+|.  ..|+++|+|+.+.+..+.+..-++.....+..+|+.++        +...+.||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD  127 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD  127 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence            3689999999999998874 4563  35899999999999998876433222211334444322        11124689


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+-=||
T Consensus       128 ~V~lDP~  134 (382)
T PRK04338        128 VVDIDPF  134 (382)
T ss_pred             EEEECCC
Confidence            9987765

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=95.86  E-value=0.011  Score=42.38  Aligned_cols=26  Identities=38%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSK   27 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~   27 (488)
                      +++.+|++|||+++++..|+.+||.+
T Consensus         4 ~~v~~L~~mGf~~~~~~~AL~~~~~n   29 (37)
T PF00627_consen    4 EKVQQLMEMGFSREQAREALRACNGN   29 (37)
T ss_dssp             HHHHHHHHHTS-HHHHHHHHHHTTTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            46789999999999999999999984

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd00194 UBA Ubiquitin Associated domain

Probab=95.75  E-value=0.014  Score=41.41  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhh
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF   38 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~   38 (488)
                      +++..|++|||+++++..|+.+|+-|  ++.-++.|+
T Consensus         3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            45689999999999999999999985  555566654

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=95.74  E-value=0.0082  Score=60.72  Aligned_cols=51  Identities=16%  Similarity=0.372  Sum_probs=47.3

Q ss_pred             ccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347          298 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  348 (488)
Q Consensus       298 ~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL  348 (488)
                      +|+=++|.|+-|++|||.++-.-.+.+...||++||||.+|.+++++.+.|
T Consensus       286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL  336 (338)
T KOG0919|consen  286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL  336 (338)
T ss_pred             HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence            678899999999999999999888999999999999999999999988765

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.73  E-value=0.038  Score=56.62  Aligned_cols=83  Identities=23%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ++-+||+|||=.||+++..-..|-  +-|++||.++.+.+..+.++.-++..  ...++..|+-+.    +.. +.+.+.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~  195 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR  195 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence            457999999999999999888995  34789999999999888877533222  112344565432    221 123478


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      +|+||-=||  .|+
T Consensus       196 fD~IIlDPP--sF~  207 (286)
T PF10672_consen  196 FDLIILDPP--SFA  207 (286)
T ss_dssp             EEEEEE--S--SEE
T ss_pred             CCEEEECCC--CCC
Confidence            999999999  665

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.66  E-value=0.012  Score=63.97  Aligned_cols=88  Identities=11%  Similarity=0.046  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcC--------CeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aG--------i~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      ...+|+|..||.|+|-+++-...        +. ..+.++|||+.+....+......+..+..+..+|.-.-.   ....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~---~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYV---LLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccc---cccc
Confidence            45789999999999998875321        22 357899999999887776554332111112222211100   0000


Q ss_pred             hhccCCccEEEecCCCCCcc
Q 011347          426 IHKLGSIDFVICQNSVPQIP  445 (488)
Q Consensus       426 ~~~~g~~DLVIGGpPCQ~FS  445 (488)
                      ....+.||+|||=||=-...
T Consensus       107 ~~~~~~fD~IIgNPPy~~~k  126 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYGRLK  126 (524)
T ss_pred             ccccCcccEEEeCCCccccC
Confidence            01236899999999977653

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.65  E-value=0.023  Score=56.44  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+-||.|.++..+.+.+.   -++++|+|+.....++.....  .....++.+|+.++.-          ..+|
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d   93 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN   93 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence            456899999999999999998874   378999999988887764421  1223356788876642          2469


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+|-.|=+
T Consensus        94 ~Vv~NlPy~  102 (258)
T PRK14896         94 KVVSNLPYQ  102 (258)
T ss_pred             EEEEcCCcc
Confidence            999987744

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.58  E-value=0.059  Score=57.59  Aligned_cols=106  Identities=20%  Similarity=0.230  Sum_probs=72.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCCc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      |-+||+|||=.|||++..-..|-.  -|++||++..+....+.|..-++..+  ..++.+|+-+.    |+....+-..|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f  291 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF  291 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence            778999999999999999999973  47899999999988888765333222  12444555432    22222222489


Q ss_pred             cEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347          433 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  486 (488)
Q Consensus       433 DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~  486 (488)
                      ||||-=||  .|+.+.              +   +. .+++..|.+++.....+
T Consensus       292 DlIilDPP--sF~r~k--------------~---~~-~~~~rdy~~l~~~~~~i  325 (393)
T COG1092         292 DLIILDPP--SFARSK--------------K---QE-FSAQRDYKDLNDLALRL  325 (393)
T ss_pred             cEEEECCc--ccccCc--------------c---cc-hhHHHHHHHHHHHHHHH
Confidence            99999999  566321              1   12 66788888888776544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=95.50  E-value=0.048  Score=52.13  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|.+...+.+. |-. ..++++|+++...+..+......+.....++.+|+.++..        ..+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  115 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF  115 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence            4678999999999998877654 322 2478999999887777654432222222245567665431        12479


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|+-+...+.+
T Consensus       116 D~V~~~~~l~~~  127 (231)
T TIGR02752       116 DYVTIGFGLRNV  127 (231)
T ss_pred             cEEEEecccccC
Confidence            999987665544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.45  E-value=0.035  Score=55.77  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=55.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      .+|||++||.|.+.+.+....-.. .++++|+++.+.+..+.+....+... ..++.+|+.+-    ++     ...||+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~-~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~-----~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LA-----GQKIDI  185 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----Cc-----CCCccE
Confidence            589999999999999888764222 47899999999988887654332211 22444665321    11     126999


Q ss_pred             EEecCCCCCcc
Q 011347          435 VICQNSVPQIP  445 (488)
Q Consensus       435 VIGGpPCQ~FS  445 (488)
                      |+.-||.-+.+
T Consensus       186 IvsNPPyi~~~  196 (284)
T TIGR00536       186 IVSNPPYIDEE  196 (284)
T ss_pred             EEECCCCCCcc
Confidence            99999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14968 putative methyltransferase; Provisional

Probab=95.35  E-value=0.06  Score=49.19  Aligned_cols=78  Identities=15%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||+.||.|.+...+.+.|.   .++++|+++.+....+.+....+...  ..+...|..+-    +.     -+.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~-----~~~   90 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----FR-----GDK   90 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----cc-----ccC
Confidence            456899999999999999888864   36789999988777765543222111  22344554321    11     126


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      +|+|+..+|+..
T Consensus        91 ~d~vi~n~p~~~  102 (188)
T PRK14968         91 FDVILFNPPYLP  102 (188)
T ss_pred             ceEEEECCCcCC
Confidence            999999998743

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=95.32  E-value=0.054  Score=54.28  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+=||.|.++..|.+.|-   -|+++|+|+.....++.....   ....++.+|+.++...++        ..|
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~--------~~~  107 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL--------QPL  107 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc--------Ccc
Confidence            557899999999999999988874   378999999998888764321   233467789888764321        158


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+|-+|
T Consensus       108 ~vv~NlP  114 (272)
T PRK00274        108 KVVANLP  114 (272)
T ss_pred             eEEEeCC
Confidence            8999888

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=95.30  E-value=0.061  Score=45.09  Aligned_cols=74  Identities=23%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             CCcccccCCCCChhHHHHHH--cCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccCC
Q 011347          355 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~--aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +-+||||=||.|.+...+.+  .|.+   ++++|+++...+..+....... .....++.+|+ ....+       ..++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-------~~~~   70 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-------FLEP   70 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-------TSSC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-------cCCC
Confidence            46799999999999999998  7764   6899999999988887652222 12233566777 22211       2257


Q ss_pred             ccEEEecC
Q 011347          432 IDFVICQN  439 (488)
Q Consensus       432 ~DLVIGGp  439 (488)
                      +|+|+...
T Consensus        71 ~D~v~~~~   78 (112)
T PF12847_consen   71 FDLVICSG   78 (112)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEECC
Confidence            99998655

...

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.27  E-value=0.052  Score=57.74  Aligned_cols=85  Identities=13%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--eeccccccChhhHHHhhhccC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv--~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      .+-+|||++||.||.+..+.++ + . -.|+++|+++...+..+.+....+.. ..+  ..+|..++..  .    ...+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~--~----~~~~  308 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ--W----AENE  308 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc--c----cccc
Confidence            4578999999999999887663 3 2 24789999999988888766543221 112  2244432221  0    0125


Q ss_pred             CccEEEecCCCCCcccc
Q 011347          431 SIDFVICQNSVPQIPNS  447 (488)
Q Consensus       431 ~~DLVIGGpPCQ~FS~a  447 (488)
                      .||.|+-.+||.++..-
T Consensus       309 ~fD~VllDaPcSg~G~~  325 (426)
T TIGR00563       309 QFDRILLDAPCSATGVI  325 (426)
T ss_pred             ccCEEEEcCCCCCCccc
Confidence            79999999999998754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=95.19  E-value=0.032  Score=56.25  Aligned_cols=101  Identities=19%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             hhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Cccee
Q 011347          333 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQI  411 (488)
Q Consensus       333 gnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~  411 (488)
                      +.++++|.+  +|+-.-.. +..-+||||-||+|.+.+.+.+-==+. -+++||+++.+..-.+++-..+.... ..+++
T Consensus        26 ~~~~~~Dai--LL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~a-~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~  101 (248)
T COG4123          26 GFRYGTDAI--LLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEKA-KIVGVEIQEEAAEMAQRNVALNPLEERIQVIE  101 (248)
T ss_pred             ccccccHHH--HHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCCC-cEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence            456667743  22222221 236789999999999999887651122 36789999998776665432211111 12455


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCCC
Q 011347          412 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQ  443 (488)
Q Consensus       412 ~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~  443 (488)
                      +||.++....      .+..||+||.-||=-.
T Consensus       102 ~Di~~~~~~~------~~~~fD~Ii~NPPyf~  127 (248)
T COG4123         102 ADIKEFLKAL------VFASFDLIICNPPYFK  127 (248)
T ss_pred             hhHHHhhhcc------cccccCEEEeCCCCCC
Confidence            6776554321      2357999999998543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=95.14  E-value=0.044  Score=54.07  Aligned_cols=75  Identities=17%  Similarity=0.112  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+.||.|.++..|.+.+-   .++++|+|+.....++..+..  ..+..++.+|+.++....       +...+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~   96 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL   96 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence            457899999999999999999884   378999999998888765421  122335678887765321       11125


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+|..|
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888887

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.08  E-value=0.079  Score=50.86  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+.||.|.++..|.+..-+--.|+++|+++...+..+.+....+.....+..+|..+.-.        ..+.||
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence            567899999999999988876532111378999999988877766554332223345566654211        125799


Q ss_pred             EEEecCCCCCc
Q 011347          434 FVICQNSVPQI  444 (488)
Q Consensus       434 LVIGGpPCQ~F  444 (488)
                      +|+-.+++...
T Consensus       149 ~Ii~~~~~~~~  159 (215)
T TIGR00080       149 RIYVTAAGPKI  159 (215)
T ss_pred             EEEEcCCcccc
Confidence            99877766544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=95.05  E-value=0.061  Score=56.15  Aligned_cols=98  Identities=21%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             HhhhhhcccCcc----hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 011347          330 ESLRHCFQTDTL----GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT  405 (488)
Q Consensus       330 k~Lgnsfqvdti----~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~  405 (488)
                      ..+...|+.+.+    ..+++.|....  .-+||||.||.|.++..+.+.+=.. .|.++|+++.+.+..+.+....+..
T Consensus       170 ~~~pgvFs~~~lD~gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~  246 (342)
T PRK09489        170 KTLPGVFSRDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLE  246 (342)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCC
Confidence            444455544443    33355444321  2379999999999998888764222 3789999999988877665433222


Q ss_pred             CCcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347          406 GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       406 g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      . .+...|+.+    .+      .+.||+|+..||=
T Consensus       247 ~-~~~~~D~~~----~~------~~~fDlIvsNPPF  271 (342)
T PRK09489        247 G-EVFASNVFS----DI------KGRFDMIISNPPF  271 (342)
T ss_pred             C-EEEEccccc----cc------CCCccEEEECCCc
Confidence            2 233345422    11      2579999998874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.01  E-value=0.058  Score=51.14  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=51.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +.+|||+-||.|-+++.+..++-. ..|+++|+++......+.+..+.+.....++.+|+.++..         .+.+|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~  112 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV  112 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence            678999999999888776655422 2378999999887777766554332223355677766521         257999


Q ss_pred             EEecC
Q 011347          435 VICQN  439 (488)
Q Consensus       435 VIGGp  439 (488)
                      |+...
T Consensus       113 I~s~~  117 (181)
T TIGR00138       113 ITSRA  117 (181)
T ss_pred             EEehh
Confidence            98643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=94.99  E-value=0.092  Score=44.37  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||.||.|.+..-+-+..=. ..++++|+++.+.+..+.+-...+.....+..+|+......       ..+.+|
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D   90 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD   90 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence            3568999999999999877664211 34789999999988887655433222222344555432110       124789


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+-
T Consensus        91 ~v~~   94 (124)
T TIGR02469        91 RVFI   94 (124)
T ss_pred             EEEE
Confidence            8875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=94.92  E-value=0.086  Score=50.37  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      .+.+|||+.||.|.+...+...+.   .++++|+++.+....+...
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~   97 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRA   97 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHH
Confidence            467899999999999999988775   3689999999887776644

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.89  E-value=0.044  Score=57.99  Aligned_cols=44  Identities=14%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      +++|||+|||+|-..+-+-.-  |.  +.|+++|+|+.|.+.++.+..
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~   90 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVE   90 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHH
Confidence            589999999999776554433  65  458999999999999988764

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=94.84  E-value=0.043  Score=55.66  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347          357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  436 (488)
Q Consensus       357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI  436 (488)
                      +||||.||.|-+.+++...+-. ..|+++|||+.|.++-+.+...++-       .++..+.. ++-+  .-.+.||+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~-dlf~--~~~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQS-DLFE--PLRGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEee-eccc--ccCCceeEEE
Confidence            7999999999999999988754 3588999999999988877654321       22333333 2211  1125899999


Q ss_pred             ecCCCCCcc
Q 011347          437 CQNSVPQIP  445 (488)
Q Consensus       437 GGpPCQ~FS  445 (488)
                      .=||=-+-+
T Consensus       182 sNPPYip~~  190 (280)
T COG2890         182 SNPPYIPAE  190 (280)
T ss_pred             eCCCCCCCc
Confidence            999987776

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=94.74  E-value=0.028  Score=56.58  Aligned_cols=108  Identities=19%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             HhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCeeeeEEEeeCCHHHHHHHHHHhhhcC
Q 011347          330 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG  403 (488)
Q Consensus       330 k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a------Gi~~k~vvsVEid~~a~~t~~~~~~~~n  403 (488)
                      |.+|..|....+..++.-+-.. ..+.+|+|.+||.|||-+++.+.      -+.-..++++|+++.+....+.+..-++
T Consensus        23 k~~G~~~TP~~i~~l~~~~~~~-~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~  101 (311)
T PF02384_consen   23 KKLGQFYTPREIVDLMVKLLNP-KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG  101 (311)
T ss_dssp             TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             cccceeehHHHHHHHHHhhhhc-cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence            4556667666666665444432 24567999999999998887651      0112357899999998876654322111


Q ss_pred             CCCC--cceeccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347          404 QTGE--LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       404 ~~g~--lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                      ....  .+..+|.-.  ....    .....+|+|+|-||=-..
T Consensus       102 ~~~~~~~i~~~d~l~--~~~~----~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 IDNSNINIIQGDSLE--NDKF----IKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHCBGCEEEES-TTT--SHSC----TST--EEEEEEE--CTCE
T ss_pred             ccccccccccccccc--cccc----ccccccccccCCCCcccc
Confidence            1011  123333211  1100    013589999999986655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.62  E-value=0.053  Score=51.47  Aligned_cols=76  Identities=17%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+++||-||||=++.|+...+-  +.|+++|||+.|-+++.++-+...- ...+...||.++..        ..|-||
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~--------~~g~fD  116 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLEL--------KGGIFD  116 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhc--------cCCeEe
Confidence            578899999999999999999886  5689999999999998775433210 11234456655432        236789


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      ..+=-||
T Consensus       117 taviNpp  123 (185)
T KOG3420|consen  117 TAVINPP  123 (185)
T ss_pred             eEEecCC
Confidence            8887776

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.56  E-value=0.082  Score=53.40  Aligned_cols=46  Identities=17%  Similarity=0.179  Sum_probs=38.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      ..+.+|||+.||.|.+++++.++|.  ..|+++|+|+.+.+..+.+..
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~  203 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAE  203 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHH
Confidence            3567899999999999999999985  358899999999888877654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.51  E-value=0.072  Score=50.39  Aligned_cols=80  Identities=19%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             CCCcccccCCCCChhHH--HHHHcCCe------eeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHH
Q 011347          354 GGLTMLSVFSGIGGAEV--TLHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES  424 (488)
Q Consensus       354 ~~itVLDLFSGiGGlsl--GL~~aGi~------~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~  424 (488)
                      .+-.|||-|||.|++-+  ++....+.      ...++++|+|+.+.+.-+.+-...+.... .+...|.+++.      
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------  101 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------  101 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence            46789999999999864  34444432      00167999999998888777654432221 13345666555      


Q ss_pred             hhhccCCccEEEecCCC
Q 011347          425 LIHKLGSIDFVICQNSV  441 (488)
Q Consensus       425 l~~~~g~~DLVIGGpPC  441 (488)
                        ...+.+|+||.=||=
T Consensus       102 --~~~~~~d~IvtnPPy  116 (179)
T PF01170_consen  102 --LPDGSVDAIVTNPPY  116 (179)
T ss_dssp             --GTTSBSCEEEEE--S
T ss_pred             --cccCCCCEEEECcch
Confidence              112579999999983

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=94.27  E-value=0.096  Score=56.51  Aligned_cols=78  Identities=12%  Similarity=0.021  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||.||.|.+.+.+.+..-. ..+.++|+|+.+.+..+.+....+ ....++.+|+.+..   +    ...+.||
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FD  321 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWD  321 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCcc
Confidence            4458999999999999887654211 237899999999998887764332 12224556664321   0    0124699


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+.-||
T Consensus       322 LIVSNPP  328 (423)
T PRK14966        322 IIVSNPP  328 (423)
T ss_pred             EEEECCC
Confidence            9998887

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=94.23  E-value=0.17  Score=48.22  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +.+|||+=||.|..+.-|.+.|.+   |.++|+++.+.+..+..-...+..+..+...|+.++..         .+.||+
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~   98 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------DGEYDF   98 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------CCCcCE
Confidence            468999999999999999998974   67899999988777654333222222233345543321         135787


Q ss_pred             EEecC
Q 011347          435 VICQN  439 (488)
Q Consensus       435 VIGGp  439 (488)
                      |+...
T Consensus        99 I~~~~  103 (197)
T PRK11207         99 ILSTV  103 (197)
T ss_pred             EEEec
Confidence            77543

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.13  E-value=0.19  Score=47.39  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=36.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      .+-+|||++||.|.++..+.+++-. ..|+++|+++...+..+.+...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            4568999999999999888665322 2478999999998888876543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=94.10  E-value=0.17  Score=47.21  Aligned_cols=46  Identities=17%  Similarity=0.160  Sum_probs=36.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      .+.+|||+.||.|.+.+.+.+.+-. .-+.++|+++.+.+..+.+..
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~   76 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQ   76 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            5678999999999999988776422 247899999998888876544

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=94.09  E-value=0.11  Score=53.35  Aligned_cols=98  Identities=17%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             Hhhhhhc--ccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCC
Q 011347          330 ESLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG  406 (488)
Q Consensus       330 k~Lgnsf--qvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g  406 (488)
                      |.||-.|  +...+..++..+.  ...+-+|||+-||.|.++..|...+-   -|+++|+|+.....++......+ ...
T Consensus        12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~   86 (294)
T PTZ00338         12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK   86 (294)
T ss_pred             CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            4556666  2334444444332  23456899999999999998887764   37899999999988887554322 122


Q ss_pred             CcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347          407 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       407 ~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      ..++.+|+.+++.          ..+|+|++-.|=+
T Consensus        87 v~ii~~Dal~~~~----------~~~d~VvaNlPY~  112 (294)
T PTZ00338         87 LEVIEGDALKTEF----------PYFDVCVANVPYQ  112 (294)
T ss_pred             EEEEECCHhhhcc----------cccCEEEecCCcc
Confidence            3356778765431          3578999877654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=94.08  E-value=0.11  Score=53.94  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=36.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      .+.+|||+-||.|.++..|.+.|.+   |+++|+++...+..+.+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~  172 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLH  172 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHH
Confidence            4678999999999999999998864   68999999988877754

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.01  E-value=0.17  Score=48.14  Aligned_cols=80  Identities=23%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.++..|.+++-   .++++|+++......+.++...+.....+..+|..+.-        ...+.||
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW--------PAYAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--------CcCCCcC
Confidence            568999999999999887777752   37899999998888877765443222224445543211        1125799


Q ss_pred             EEEecCCCCCc
Q 011347          434 FVICQNSVPQI  444 (488)
Q Consensus       434 LVIGGpPCQ~F  444 (488)
                      +|+-..+|..+
T Consensus       147 ~I~~~~~~~~~  157 (212)
T PRK00312        147 RILVTAAAPEI  157 (212)
T ss_pred             EEEEccCchhh
Confidence            98887776644

>KOG2730 consensus Methylase [General function prediction only]

Probab=93.81  E-value=0.057  Score=54.15  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             ccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccc
Q 011347          337 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQ  415 (488)
Q Consensus       337 qvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~  415 (488)
                      ++.-++-|+.--+.-..+.-.+||-|||+||-..=|-.-|-.   |.++|||+....--+.+-+-..-+. ..++++|+-
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l  153 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL  153 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence            445556665544443436677999999999999988888853   6899999997665543222111111 114556665


Q ss_pred             ccChhhHHHhhhccCCccEEEecCCCCCcccc
Q 011347          416 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNS  447 (488)
Q Consensus       416 ~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~a  447 (488)
                      ++-. .+. +  ...-+|+|.+.||=-+-|..
T Consensus       154 d~~~-~lq-~--~K~~~~~vf~sppwggp~y~  181 (263)
T KOG2730|consen  154 DLAS-KLK-A--DKIKYDCVFLSPPWGGPSYL  181 (263)
T ss_pred             HHHH-HHh-h--hhheeeeeecCCCCCCcchh
Confidence            4321 111 1  11237899998887766643

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=93.77  E-value=0.11  Score=53.53  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=53.9

Q ss_pred             CcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          356 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       356 itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      ..++|++||.|.+++++ |.++ +. .+.|+|.++.|......|-....-.|.+-+..-|.+  .+.........|..|+
T Consensus       150 ~~ildlgtGSGaIslsll~~L~-~~-~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me--~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLP-QC-TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME--SDASDEHPLLEGKIDL  225 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCC-Cc-eEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc--cccccccccccCceeE
Confidence            36899999999999996 5677 43 678999999998877665443322233322222222  2222222224589999


Q ss_pred             EEecCCCC
Q 011347          435 VICQNSVP  442 (488)
Q Consensus       435 VIGGpPCQ  442 (488)
                      +++-||--
T Consensus       226 lvsNPPYI  233 (328)
T KOG2904|consen  226 LVSNPPYI  233 (328)
T ss_pred             EecCCCcc
Confidence            99999853

>PLN02244 tocopherol O-methyltransferase

Probab=93.58  E-value=0.26  Score=51.04  Aligned_cols=74  Identities=23%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+|||+-||.|++...|.+. |.+   |+++|+++...+..+......+. ....++.+|+.++.-        .-+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~---v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~  185 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGAN---VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDG  185 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCC
Confidence            35678999999999999888764 653   67899999977665543322211 112345577765531        125


Q ss_pred             CccEEEe
Q 011347          431 SIDFVIC  437 (488)
Q Consensus       431 ~~DLVIG  437 (488)
                      .||+|+.
T Consensus       186 ~FD~V~s  192 (340)
T PLN02244        186 QFDLVWS  192 (340)
T ss_pred             CccEEEE
Confidence            7999985

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=93.56  E-value=0.16  Score=54.02  Aligned_cols=75  Identities=13%  Similarity=0.088  Sum_probs=50.5

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC----cceeccccccChhhHHHhhhccCC
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~----lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      -+||||.||.|-+.+.+.+.+=.. -|.++|+++.+....+.++... ....    .+...|+.+    .+     ..+.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~-~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~----~~-----~~~~  298 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS----GV-----EPFR  298 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc----cC-----CCCC
Confidence            389999999999999888764222 3788999999998888777532 2211    122334321    01     1147


Q ss_pred             ccEEEecCCC
Q 011347          432 IDFVICQNSV  441 (488)
Q Consensus       432 ~DLVIGGpPC  441 (488)
                      ||+|+.-||-
T Consensus       299 fDlIlsNPPf  308 (378)
T PRK15001        299 FNAVLCNPPF  308 (378)
T ss_pred             EEEEEECcCc
Confidence            9999998885

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=93.50  E-value=0.13  Score=50.64  Aligned_cols=51  Identities=24%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      |..+...+.+|||+-||.|.+.+.+.+.|..  .|+++|+|+.+.+..+.+..
T Consensus       113 l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        113 LEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             HHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence            3333446789999999999999999999864  37899999999887776543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.50  E-value=0.23  Score=47.12  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=47.7

Q ss_pred             CCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcC-CCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n-~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+-+|||+.||.|.+++.+-+ +|-. .-|+++|+++.+.+..+.+-...+ .....+..+|..++    +..   ..+
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~~---~~~  110 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LFT---INE  110 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hhh---cCC
Confidence            3567899999999999887754 3422 237899999998877765443221 11112233444321    111   125


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .+|+|+-|.
T Consensus       111 ~~D~V~~~~  119 (198)
T PRK00377        111 KFDRIFIGG  119 (198)
T ss_pred             CCCEEEECC
Confidence            799988654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=93.41  E-value=0.21  Score=47.88  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=52.8

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      ++++.+.+|||+=||.|.+++.+.++.-. ..|+++|+++......+.+....+.....++.+|+.++..         .
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~  110 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E  110 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence            33445789999999999988877653212 2478999999888777766554432223345566665432         2


Q ss_pred             CCccEEEec
Q 011347          430 GSIDFVICQ  438 (488)
Q Consensus       430 g~~DLVIGG  438 (488)
                      +.+|+|+..
T Consensus       111 ~~fDlV~~~  119 (187)
T PRK00107        111 EKFDVVTSR  119 (187)
T ss_pred             CCccEEEEc
Confidence            479999963

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.31  E-value=0.19  Score=55.04  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=51.8

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+|||+.||.|.+.+++...  +.   .++++|+|+.+.+..+.+....+... ..+..+|+.+       .+  ..+.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~---~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~  206 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNA---NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQK  206 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCC
Confidence            468999999999999887543  33   37899999999988887654332111 1133444421       11  1247


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      ||+|+..||=-+.+
T Consensus       207 fDlIvsNPPYi~~~  220 (506)
T PRK01544        207 FDFIVSNPPYISHS  220 (506)
T ss_pred             ccEEEECCCCCCch
Confidence            99999999855443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=93.30  E-value=0.3  Score=46.36  Aligned_cols=45  Identities=24%  Similarity=0.312  Sum_probs=37.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      +.+.+|||+-||.|.+...|.+.|..   +.++|+++......+....
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~  106 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAP  106 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHH
Confidence            34678999999999999999888853   7899999998887776554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=93.16  E-value=0.27  Score=47.05  Aligned_cols=82  Identities=21%  Similarity=0.152  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccc-cccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI-~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.+...+.+.. +-..+++||+++......+.+..........++.+|+ ..+.     ... ..+.|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~~-~~~~~  112 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DMF-PDGSL  112 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HHc-Ccccc
Confidence            45789999999999999886642 2234889999999988887765433222223455666 3221     111 12579


Q ss_pred             cEEEecCCCC
Q 011347          433 DFVICQNSVP  442 (488)
Q Consensus       433 DLVIGGpPCQ  442 (488)
                      |+|+--+|.+
T Consensus       113 D~V~~~~~~p  122 (202)
T PRK00121        113 DRIYLNFPDP  122 (202)
T ss_pred             ceEEEECCCC
Confidence            9998765543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.11  E-value=0.24  Score=48.71  Aligned_cols=78  Identities=21%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+.+|||+=||.|.++..|.+.|.+   |+++|+++...+..+......+.. ...++.+|+.++...       ..+.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-------~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-------LETP  112 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-------cCCC
Confidence            45679999999999999999999864   678999999888777654322211 112455666655321       1247


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      ||+|+....
T Consensus       113 fD~V~~~~v  121 (255)
T PRK11036        113 VDLILFHAV  121 (255)
T ss_pred             CCEEEehhH
Confidence            898886544

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=92.96  E-value=0.26  Score=51.13  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      .+.+|||+-||.|.+...|.+.|.+   |.++|+++...+..+..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~  185 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERR  185 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Confidence            4679999999999999999999864   68899999987766653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=92.55  E-value=0.26  Score=51.13  Aligned_cols=57  Identities=21%  Similarity=0.292  Sum_probs=47.2

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      ..=|.-|..+-.++.+|||+=||.|=+++|..++|-  +-++++|||+.|.++-+.|-.
T Consensus       150 ~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~  206 (300)
T COG2264         150 SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR  206 (300)
T ss_pred             HHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence            333556666666899999999999999999999997  458899999999988877544

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=92.53  E-value=0.28  Score=49.44  Aligned_cols=72  Identities=33%  Similarity=0.355  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+++|||.=||.|=++.-+.++|..   |.++|+++.+..+-+.++..+.   ..   .|=...+.++   +...-+.||
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~ed---l~~~~~~FD  126 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESG---VN---IDYRQATVED---LASAGGQFD  126 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHHH---HHhcCCCcc
Confidence            5789999999999999999999964   7899999999999988765432   11   1222223333   332237899


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+.
T Consensus       127 vV~c  130 (243)
T COG2227         127 VVTC  130 (243)
T ss_pred             EEEE
Confidence            9973

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=92.37  E-value=0.34  Score=47.24  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~  395 (488)
                      +.+-+|||+.||.|--.+-|.+.|++   |++||+++.|++.+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~   72 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF   72 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence            45679999999999999999999986   68999999998764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=92.17  E-value=0.41  Score=40.10  Aligned_cols=70  Identities=24%  Similarity=0.369  Sum_probs=47.5

Q ss_pred             ccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          358 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       358 VLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      ||||=||.|-....|...   |.+ .-+.++|+++.+....++.....+. ...++..|++++..        ..+.+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence            689999999999998876   432 2478999999998888776543222 34467789977532        2358999


Q ss_pred             EEe
Q 011347          435 VIC  437 (488)
Q Consensus       435 VIG  437 (488)
                      |+.
T Consensus        71 v~~   73 (101)
T PF13649_consen   71 VVC   73 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=91.87  E-value=0.5  Score=44.79  Aligned_cols=83  Identities=19%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ...++||+=||.|.+...+.+..=. ..++++|+++...+..++.....+.....++.+|+.++....+     ..+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCcee
Confidence            3457999999999999888876422 3578999999877666554443322223345577765432111     114699


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      .|+--+|.-
T Consensus        90 ~v~~~~pdp   98 (194)
T TIGR00091        90 KVFLNFPDP   98 (194)
T ss_pred             EEEEECCCc
Confidence            998877644

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=91.81  E-value=0.79  Score=43.96  Aligned_cols=43  Identities=30%  Similarity=0.306  Sum_probs=35.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      .+.+|||+.||.|.+...+.+.|.+   ++++|+++......+...
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   90 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHA   90 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHH
Confidence            4678999999999999999888853   678999999876666543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=91.72  E-value=0.26  Score=49.03  Aligned_cols=77  Identities=21%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-+|.|-++..|.+.|   +-++++|+|+.....++.-..  ......++.+|+-+++.....     .....
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~   99 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL   99 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence            67889999999999999999998   457899999999988886433  122333677999888764321     23556


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+|--|
T Consensus       100 ~vv~NlP  106 (262)
T PF00398_consen  100 LVVGNLP  106 (262)
T ss_dssp             EEEEEET
T ss_pred             EEEEEec
Confidence            7888776

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=91.71  E-value=0.54  Score=45.38  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+-||.|.++.-+.++ |- -..|+++|+++...+..+.++...+.....+..+|..+...        ..+.
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~  145 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAP  145 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCC
Confidence            35689999999999999777654 32 12478999999988887776654322222345566543221        1257


Q ss_pred             ccEEEec
Q 011347          432 IDFVICQ  438 (488)
Q Consensus       432 ~DLVIGG  438 (488)
                      ||+|+-+
T Consensus       146 fD~I~~~  152 (212)
T PRK13942        146 YDRIYVT  152 (212)
T ss_pred             cCEEEEC
Confidence            8887643

>TIGR00477 tehB tellurite resistance protein TehB

Probab=91.71  E-value=0.59  Score=44.43  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=49.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +.+|||+=||.|-.+.-|.+.|.+   |.++|+++.+.+..+......+- .......|+....   +      .+.+|+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~---~------~~~fD~   97 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAA---L------NEDYDF   97 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcc---c------cCCCCE
Confidence            468999999999999999888874   68899999988877654432221 1112233443221   1      136899


Q ss_pred             EEecCCCC
Q 011347          435 VICQNSVP  442 (488)
Q Consensus       435 VIGGpPCQ  442 (488)
                      |+...+.-
T Consensus        98 I~~~~~~~  105 (195)
T TIGR00477        98 IFSTVVFM  105 (195)
T ss_pred             EEEecccc
Confidence            88766543

Part of a tellurite-reducing operon tehA and tehB

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.59  E-value=0.17  Score=52.67  Aligned_cols=62  Identities=24%  Similarity=0.270  Sum_probs=46.2

Q ss_pred             cccCcchhhhccccccCCCCCcccccCCCCChhHH-HHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlsl-GL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      |+--.+.--++|++ ++..+-.++|||||||=|.+ -+-.+|-  +.|+|+|+|+.+..++++.-.
T Consensus       177 FS~GN~~EK~Rv~~-~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~  239 (351)
T KOG1227|consen  177 FSRGNIKEKKRVLN-TSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE  239 (351)
T ss_pred             hhcCcHHHHHHhhh-cccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence            33333344445543 34556779999999999999 6678997  469999999999999998643

>TIGR00478 tly hemolysin TlyA family protein

Probab=91.58  E-value=0.37  Score=47.89  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=47.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHH-HHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR-RILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~-~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.||++..+.+.|.  +.|++||+++.-. ..++.     +..-......||+.++.+++.   ..+..+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~  144 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF  144 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence            567899999999999999999985  4589999999422 12221     111112344577766655542   123456


Q ss_pred             cEEEec
Q 011347          433 DFVICQ  438 (488)
Q Consensus       433 DLVIGG  438 (488)
                      |+++-+
T Consensus       145 DvsfiS  150 (228)
T TIGR00478       145 DVSFIS  150 (228)
T ss_pred             eEEEee
Confidence            766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=91.47  E-value=0.53  Score=47.38  Aligned_cols=43  Identities=21%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      -+|||+=||.|...+-|.+.|++   |.++|+++.+.+..+.....
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence            38999999999999999888974   68999999998877765443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=91.39  E-value=0.71  Score=44.21  Aligned_cols=82  Identities=20%  Similarity=0.127  Sum_probs=51.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+.||.|..+.-+.++ +-. ..|+++|+++......+.+....+... ..+..+|..+.-.        ..+.
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~-g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~  142 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERR-GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP  142 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence            4578999999999998776653 211 247899999997766665543322111 2244566654221        1257


Q ss_pred             ccEEEecCCCCCc
Q 011347          432 IDFVICQNSVPQI  444 (488)
Q Consensus       432 ~DLVIGGpPCQ~F  444 (488)
                      ||+|+-+..+..+
T Consensus       143 fD~Ii~~~~~~~~  155 (205)
T PRK13944        143 FDAIIVTAAASTI  155 (205)
T ss_pred             ccEEEEccCcchh
Confidence            9988877655443

>PRK05785 hypothetical protein; Provisional

Probab=91.29  E-value=0.52  Score=46.10  Aligned_cols=70  Identities=16%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+||||-||.|-+...|.+. |.   -|+++|+++...+.-+.   +    .. .+.+|..++.-.        -+.|
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~---~----~~-~~~~d~~~lp~~--------d~sf  111 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLV---A----DD-KVVGSFEALPFR--------DKSF  111 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHh---c----cc-eEEechhhCCCC--------CCCE
Confidence            4578999999999998888877 43   37899999998766542   1    11 345666655321        2579


Q ss_pred             cEEEecCCCC
Q 011347          433 DFVICQNSVP  442 (488)
Q Consensus       433 DLVIGGpPCQ  442 (488)
                      |+|+.+.-.+
T Consensus       112 D~v~~~~~l~  121 (226)
T PRK05785        112 DVVMSSFALH  121 (226)
T ss_pred             EEEEecChhh
Confidence            9999876443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=91.23  E-value=0.54  Score=51.43  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||-||=+..+..+ +-+ -.|+|+|+++.-.++++.+-...+.....+...|.+++..     .  ..+.|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence            5678999999999999877653 211 1488999999998898887665433222333455544322     1  11469


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |.|+==.||.+...-
T Consensus       185 D~ILvDaPCSG~G~~  199 (470)
T PRK11933        185 DAILLDAPCSGEGTV  199 (470)
T ss_pred             CeEEEcCCCCCCccc
Confidence            999999999987654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=91.17  E-value=0.56  Score=45.91  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~  395 (488)
                      +.+-+||++.||.|--.+-|-..|++   |++||+++.|.+.+
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~   75 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF   75 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence            45679999999999999999999986   68999999998764

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=91.02  E-value=0.52  Score=45.60  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=47.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~~~g~  431 (488)
                      +.+-+||||=||.|+++..+.+..-.-..|++||+++..           +.++..++.+|+.+... ..|.... ..+.
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence            346689999999999987665542111358899999831           12344567889887542 2222111 2367


Q ss_pred             ccEEEec
Q 011347          432 IDFVICQ  438 (488)
Q Consensus       432 ~DLVIGG  438 (488)
                      +|+|+..
T Consensus       118 ~D~V~S~  124 (209)
T PRK11188        118 VQVVMSD  124 (209)
T ss_pred             CCEEecC
Confidence            9999973

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=90.84  E-value=0.41  Score=49.37  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=42.4

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      +.|..+...+-+|||+=||.|=++++..++|-.  -|+++|||+.|.++-+.|-.
T Consensus       153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~  205 (295)
T PF06325_consen  153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAE  205 (295)
T ss_dssp             HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHH
Confidence            334444456679999999999999999999974  48999999999998887654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=90.79  E-value=0.58  Score=45.58  Aligned_cols=81  Identities=15%  Similarity=0.098  Sum_probs=53.0

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh
Q 011347          342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK  421 (488)
Q Consensus       342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~  421 (488)
                      ..+++.|..  ...-+|||+=||.|.++..|...|.   .++++|+++...+..+..     .....++.+|+.++.-  
T Consensus        32 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~-----~~~~~~~~~d~~~~~~--   99 (251)
T PRK10258         32 DALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQK-----DAADHYLAGDIESLPL--   99 (251)
T ss_pred             HHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhh-----CCCCCEEEcCcccCcC--
Confidence            334444443  2346799999999999988888774   378999999987666542     1112245677765531  


Q ss_pred             HHHhhhccCCccEEEecCC
Q 011347          422 FESLIHKLGSIDFVICQNS  440 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGpP  440 (488)
                            ..+.||+|+...+
T Consensus       100 ------~~~~fD~V~s~~~  112 (251)
T PRK10258        100 ------ATATFDLAWSNLA  112 (251)
T ss_pred             ------CCCcEEEEEECch
Confidence                  1146899886543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=90.73  E-value=0.37  Score=45.32  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||-||.|.++..+.+.+... .+.++|+++......+....    ....++.+|+.++..        ..+.+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD  100 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFD  100 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCcee
Confidence            34789999999999999999887543 37899999988766654321    112245567765431        114689


Q ss_pred             EEEecCCCCCc
Q 011347          434 FVICQNSVPQI  444 (488)
Q Consensus       434 LVIGGpPCQ~F  444 (488)
                      +|+....++.+
T Consensus       101 ~vi~~~~l~~~  111 (240)
T TIGR02072       101 LIVSNLALQWC  111 (240)
T ss_pred             EEEEhhhhhhc
Confidence            99977665543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=90.72  E-value=0.31  Score=45.35  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~  395 (488)
                      +.+-.|||.|+|.|.-.++..++|-+   .+++|+++..+++.
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a  229 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA  229 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence            45667999999999999999999954   67899999977654

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=90.65  E-value=0.88  Score=45.45  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             hhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCeeeeEE
Q 011347          305 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI  383 (488)
Q Consensus       305 ~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vv  383 (488)
                      .=.|+|||.-.-|+-  ++..++..               ++.+.  .+.+.+|||+=||.|+.+..+.+ .|.   .|+
T Consensus        22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~   79 (263)
T PTZ00098         22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH   79 (263)
T ss_pred             hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence            345788887555554  44444333               22221  24567899999999998877744 354   378


Q ss_pred             EeeCCHHHHHHHHHH
Q 011347          384 SIETSETNRRILKRW  398 (488)
Q Consensus       384 sVEid~~a~~t~~~~  398 (488)
                      ++|+++......+..
T Consensus        80 giD~s~~~~~~a~~~   94 (263)
T PTZ00098         80 GVDICEKMVNIAKLR   94 (263)
T ss_pred             EEECCHHHHHHHHHH
Confidence            999999877666553

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=90.33  E-value=0.82  Score=42.68  Aligned_cols=74  Identities=22%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...+-+.+-....++++|+++......+....  ......+..+|+.++..        ..+.+|
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~--------~~~~~D  108 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF--------EDNSFD  108 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC--------CCCcEE
Confidence            56789999999999999888776431247899999988777665432  11122345567765431        114688


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+-
T Consensus       109 ~i~~  112 (223)
T TIGR01934       109 AVTI  112 (223)
T ss_pred             EEEE
Confidence            8764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=90.25  E-value=1  Score=44.93  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=48.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhh---hcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~---~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|.+...+.+. |-. ..|+++|+++...+..+....   ........++.+|+.++.-.        .
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~--------~  143 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD--------D  143 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC--------C
Confidence            4678999999999998877653 422 247899999998776653211   00111222456777665421        1


Q ss_pred             CCccEEEecC
Q 011347          430 GSIDFVICQN  439 (488)
Q Consensus       430 g~~DLVIGGp  439 (488)
                      +.||+|+.+.
T Consensus       144 ~sfD~V~~~~  153 (261)
T PLN02233        144 CYFDAITMGY  153 (261)
T ss_pred             CCEeEEEEec
Confidence            4699998654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.10  E-value=1.4  Score=47.11  Aligned_cols=77  Identities=18%  Similarity=0.150  Sum_probs=51.6

Q ss_pred             eEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCcccc
Q 011347          381 GVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMA  459 (488)
Q Consensus       381 ~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~  459 (488)
                      .++++|||+...+.-+.|..+....+.+ +...|++.+...        +..+|+||+-||=-                 
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPYG-----------------  310 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPYG-----------------  310 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCcc-----------------
Confidence            4779999999999999888766443322 345777777643        24789999988821                 


Q ss_pred             ccCCCCCCCCcchHHHHHHHHHHh
Q 011347          460 AESDNLPDFDFSLYYEFVRVVQRV  483 (488)
Q Consensus       460 g~r~Gl~D~Rs~LF~EfvRIV~~v  483 (488)
                       .|-|-+..-..||.+|.+.++..
T Consensus       311 -eRlg~~~~v~~LY~~fg~~lk~~  333 (381)
T COG0116         311 -ERLGSEALVAKLYREFGRTLKRL  333 (381)
T ss_pred             -hhcCChhhHHHHHHHHHHHHHHH
Confidence             22222222345899999888554

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=89.92  E-value=0.83  Score=43.28  Aligned_cols=43  Identities=37%  Similarity=0.359  Sum_probs=35.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      .+.+|||+-||.|.+...+.+.|..   ++++|+++......+...
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   87 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA   87 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence            4688999999999999888888764   778999998776666543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK10742 putative methyltransferase; Provisional

Probab=89.65  E-value=1.2  Score=45.12  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--eeccccccChhhHHHhhhccCCcc
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv--~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+|||+|+|-|..+.=+-.+|..   |..||-++.....++.......+...+-  +...|+=+..+.+.-+-..-..||
T Consensus        90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD  166 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence            48999999999998888889974   7889999999999887665422111110  012243334443332222224699


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|.-=||=.
T Consensus       167 VVYlDPMfp  175 (250)
T PRK10742        167 VVYLDPMFP  175 (250)
T ss_pred             EEEECCCCC
Confidence            999998743

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=89.58  E-value=0.94  Score=46.07  Aligned_cols=88  Identities=20%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.|+-||=+..+-.+-..--.++++|+++.-...++.+..+.+.....+...|-+++......      ..||
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~------~~fd  158 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE------SKFD  158 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT------TTEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc------cccc
Confidence            4567999999999998777665432235889999999999998876655433332333444444322221      2599


Q ss_pred             EEEecCCCCCcccc
Q 011347          434 FVICQNSVPQIPNS  447 (488)
Q Consensus       434 LVIGGpPCQ~FS~a  447 (488)
                      .|+-=.||.+....
T Consensus       159 ~VlvDaPCSg~G~i  172 (283)
T PF01189_consen  159 RVLVDAPCSGLGTI  172 (283)
T ss_dssp             EEEEECSCCCGGGT
T ss_pred             hhhcCCCccchhhh
Confidence            99999999997654

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=89.47  E-value=1.1  Score=44.06  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=55.6

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccCh
Q 011347          342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT  419 (488)
Q Consensus       342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~  419 (488)
                      +.+|+.|-... +.-+||++.+|+|.-.+.+-.+ +-.- .++++|+|+.+.+..+.+|...+... ..++.+|..++  
T Consensus        57 g~~L~~l~~~~-~~~~vLEiGt~~G~s~l~la~~~~~~g-~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~--  132 (234)
T PLN02781         57 GLFLSMLVKIM-NAKNTLEIGVFTGYSLLTTALALPEDG-RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA--  132 (234)
T ss_pred             HHHHHHHHHHh-CCCEEEEecCcccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence            33444444433 3457999999999765555432 2121 37899999999999999987654322 12445666432  


Q ss_pred             hhHHHhhhc--cCCccEEEecC
Q 011347          420 KKFESLIHK--LGSIDFVICQN  439 (488)
Q Consensus       420 ~~Ie~l~~~--~g~~DLVIGGp  439 (488)
                        +..+...  .+.||+|+-..
T Consensus       133 --L~~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        133 --LDQLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             --HHHHHhCCCCCCCCEEEECC
Confidence              2333222  25799887553

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=89.46  E-value=1.1  Score=42.28  Aligned_cols=76  Identities=21%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.++..+...+-....++++|+++......+.+....+.. ...+...|+.++..        ..+.+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~  122 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSF  122 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCc
Confidence            3578999999999999888877621235789999998877777654332111 12244566655431        12468


Q ss_pred             cEEEe
Q 011347          433 DFVIC  437 (488)
Q Consensus       433 DLVIG  437 (488)
                      |+|+.
T Consensus       123 D~I~~  127 (239)
T PRK00216        123 DAVTI  127 (239)
T ss_pred             cEEEE
Confidence            88874

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=89.42  E-value=0.8  Score=44.95  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+=||.|.+...|.+..-. ..|+++|+++...+..+.       .+..++.+|+.++..         .+.||
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD   91 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD   91 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence            5578999999999999888876211 236899999987665542       123355677765432         25799


Q ss_pred             EEEecCCCCCc
Q 011347          434 FVICQNSVPQI  444 (488)
Q Consensus       434 LVIGGpPCQ~F  444 (488)
                      +|+.....+-+
T Consensus        92 ~v~~~~~l~~~  102 (255)
T PRK14103         92 VVVSNAALQWV  102 (255)
T ss_pred             EEEEehhhhhC
Confidence            99998766544

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=89.35  E-value=0.89  Score=44.36  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+=||.|.+...|.+.. +...|+++|+++...+..+...     ....++.+|+.++...         +.+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~---------~~f   94 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPP---------QAL   94 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCC---------CCc
Confidence            356789999999999988887652 1234789999999887766532     1222455677654321         368


Q ss_pred             cEEEecCCCC
Q 011347          433 DFVICQNSVP  442 (488)
Q Consensus       433 DLVIGGpPCQ  442 (488)
                      |+|+.....+
T Consensus        95 D~v~~~~~l~  104 (258)
T PRK01683         95 DLIFANASLQ  104 (258)
T ss_pred             cEEEEccChh
Confidence            8888766544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=89.34  E-value=0.91  Score=47.27  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=46.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.++.-+.++.-.-..|+++|+++...+..+......+.....++.+|..+...        ..+.+|
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD  151 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD  151 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence            567899999999999887765421111378999999876655554333222222344566543221        124577


Q ss_pred             EEEec
Q 011347          434 FVICQ  438 (488)
Q Consensus       434 LVIGG  438 (488)
                      +|+-+
T Consensus       152 ~Ii~~  156 (322)
T PRK13943        152 VIFVT  156 (322)
T ss_pred             EEEEC
Confidence            77653

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=89.27  E-value=0.43  Score=50.71  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=42.3

Q ss_pred             cccCcchhhhccccccCCCCCcccccCCCCC--hhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiG--GlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      .++-.+. .+++++.-...++++||-+||+|  |+.++.+-.|.  ..|+++|+|+.|.+.++.|-.
T Consensus        32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~   95 (377)
T PF02005_consen   32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE   95 (377)
T ss_dssp             HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred             eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence            4444444 35555554456799999999999  99999997775  458899999999999988754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PLN02672 methionine S-methyltransferase

Probab=88.96  E-value=0.7  Score=55.28  Aligned_cols=46  Identities=9%  Similarity=0.005  Sum_probs=37.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      +.+||||-||.|-+.+.+...+=. ..|+++||++.+....+.|...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~  164 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYL  164 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            458999999999999998775421 3478999999999888877653

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=88.95  E-value=1.2  Score=44.66  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .|.+|||+-||.|=+.+.+.+..=.- -|+++|+++.-.+.-+.-..+.+..+.-++.+|..+|.-.        -..||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence            68999999999999999887643133 4678999998766655422222111222456777666521        14689


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+-++==+++.
T Consensus       122 ~vt~~fglrnv~  133 (238)
T COG2226         122 AVTISFGLRNVT  133 (238)
T ss_pred             EEEeeehhhcCC
Confidence            988776444443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=88.66  E-value=0.87  Score=51.91  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             eEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347          381 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  440 (488)
Q Consensus       381 ~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP  440 (488)
                      .++++|+|+.+....+.+....+.... .+..+|+.++....      ..+.+|+|+.=||
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP  312 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP  312 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence            378999999999999988776543332 24567777664311      1146899998887

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=88.52  E-value=0.77  Score=48.58  Aligned_cols=77  Identities=25%  Similarity=0.251  Sum_probs=51.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCccee-ccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~-~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .|-.|||=|||.||+-+-.--.|..   ++++||+....+=.+.|....+-.+-.+.. .|++++.   +.+     ..|
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v  265 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV  265 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence            4567999999999999888888875   678999998766555544322211211222 2666655   211     149


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |-|+.=||=
T Consensus       266 daIatDPPY  274 (347)
T COG1041         266 DAIATDPPY  274 (347)
T ss_pred             ceEEecCCC
Confidence            999999884

>PRK00811 spermidine synthase; Provisional

Probab=88.47  E-value=1  Score=45.67  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccChhhHHHhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      +++-+||+|-+|.|++..-+.+. +.  +-|..||+|+...+..+.++...+     .+...++.+|..+.-.       
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence            45678999999999998766554 54  458899999999999988775321     1122245566544211       


Q ss_pred             hccCCccEEEecC
Q 011347          427 HKLGSIDFVICQN  439 (488)
Q Consensus       427 ~~~g~~DLVIGGp  439 (488)
                      ...+.+|+|+.-.
T Consensus       146 ~~~~~yDvIi~D~  158 (283)
T PRK00811        146 ETENSFDVIIVDS  158 (283)
T ss_pred             hCCCcccEEEECC
Confidence            1235799999754

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=88.19  E-value=1.6  Score=45.53  Aligned_cols=81  Identities=15%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHH--HcCCeeeeEEEeeCCHHHHHHHHHHhhhc-CCCCCc-c-eeccccccChhhHHHhhhc
Q 011347          354 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~--~aGi~~k~vvsVEid~~a~~t~~~~~~~~-n~~g~l-v-~~~DI~~L~~~~Ie~l~~~  428 (488)
                      .+.++|||=||+|++..-+-  .-|.+   ++++|||+.+.+..+.+-..+ +..+.+ + ...|...+-    ..+...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~---~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWR---FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCE---EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence            46889999999998865443  33543   688999999998888765443 122211 1 112222211    111112


Q ss_pred             cCCccEEEecCCC
Q 011347          429 LGSIDFVICQNSV  441 (488)
Q Consensus       429 ~g~~DLVIGGpPC  441 (488)
                      .+.||+|+.=||=
T Consensus       187 ~~~fDlivcNPPf  199 (321)
T PRK11727        187 NERFDATLCNPPF  199 (321)
T ss_pred             CCceEEEEeCCCC
Confidence            3579999999983

>PRK08317 hypothetical protein; Provisional

Probab=87.93  E-value=1.8  Score=40.52  Aligned_cols=45  Identities=27%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      .+.+|||+-||.|++...+.+.......++++|+++......+..
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            467899999999999888876431223478999999876665543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=87.74  E-value=1.3  Score=43.85  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|=++..+.+ +|-.. -|+++|+++.-.+..+.--.+.......++.+|..++.-.+        +.|
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf  117 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF  117 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence            467999999999999887765 45333 47889999997776654322222222335668887775321        479


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+.++
T Consensus       118 D~v~~~f  124 (233)
T PF01209_consen  118 DAVTCSF  124 (233)
T ss_dssp             EEEEEES
T ss_pred             eEEEHHh
Confidence            9998776

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=87.16  E-value=0.37  Score=46.68  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             hccccccCC--CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          345 LSVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       345 lsvLK~~fp--~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      +..+.+++|  ..-+++|+|||.|+..+.+...+   ..++..|+++.....++...
T Consensus         9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen    9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHH
Confidence            333445566  57789999999999888876655   45788999999888777433

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK06202 hypothetical protein; Provisional

Probab=87.08  E-value=1.9  Score=41.61  Aligned_cols=77  Identities=19%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             CCCCcccccCCCCChhHHHHHH----cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~----aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      .++.+||||=||.|++...|.+    .|...+ ++++|+++...+..+..-   ...+..+...|...+..        .
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~---~~~~~~~~~~~~~~l~~--------~  126 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANP---RRPGVTFRQAVSDELVA--------E  126 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhcc---ccCCCeEEEEecccccc--------c
Confidence            3567899999999998887753    465433 789999999877665421   11122223333332221        1


Q ss_pred             cCCccEEEecCCC
Q 011347          429 LGSIDFVICQNSV  441 (488)
Q Consensus       429 ~g~~DLVIGGpPC  441 (488)
                      .+.+|+|+...-.
T Consensus       127 ~~~fD~V~~~~~l  139 (232)
T PRK06202        127 GERFDVVTSNHFL  139 (232)
T ss_pred             CCCccEEEECCee
Confidence            2579999876533

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=86.96  E-value=2.1  Score=41.69  Aligned_cols=42  Identities=21%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      +-++|||=||-|.=++=|.+.|++   |.|+|+++.+...++..-
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a   72 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLA   72 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHH
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHH
Confidence            468999999999999999999996   678999999988776543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=86.74  E-value=0.98  Score=34.16  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=27.0

Q ss_pred             hhhHHhcCCCHHHHHHHHHHh--CCCCchhhhhhh
Q 011347            4 TLQLLEMGFSENQVSLAIEKF--GSKTPISELADK   36 (488)
Q Consensus         4 ~~~l~~mgf~~~e~~~ai~~~--g~~~~~~~l~d~   36 (488)
                      +..|+..||++.||..||.+.  +++.+++++...
T Consensus         7 ~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~   41 (47)
T PF07499_consen    7 LEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ   41 (47)
T ss_dssp             HHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            467999999999999999999  899998887654

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=86.48  E-value=1.7  Score=40.71  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=45.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc--cC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~--~g  430 (488)
                      +.+-+|||+=||.||++..+.+....-..++++|+++..    +       ..+..++..|+.+...  ++.+...  .+
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence            456789999999999988776654222247899999853    1       1122245567765321  2222211  24


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .+|+|+...
T Consensus        98 ~~D~V~~~~  106 (188)
T TIGR00438        98 KVDVVMSDA  106 (188)
T ss_pred             CccEEEcCC
Confidence            699999643

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=85.93  E-value=2  Score=42.43  Aligned_cols=77  Identities=23%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             CCCCcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+-+|||+=||.|....-+ ...|-.. .|+++|+++......+.+....+.....+..+|+.++.-        ..+.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~  146 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS  146 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence            45679999999997655433 3445432 378999999988877765433222222234466655431        1146


Q ss_pred             ccEEEec
Q 011347          432 IDFVICQ  438 (488)
Q Consensus       432 ~DLVIGG  438 (488)
                      ||+|+..
T Consensus       147 fD~Vi~~  153 (272)
T PRK11873        147 VDVIISN  153 (272)
T ss_pred             eeEEEEc
Confidence            8888744

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=85.88  E-value=1.2  Score=42.03  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=49.0

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc-cChhhHHH
Q 011347          347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFES  424 (488)
Q Consensus       347 vLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~-L~~~~Ie~  424 (488)
                      .+.++.+.+.+|||+-||.|.+...+.+. +.   .++++|+++.+....+.    .   +..++..|+.+ +..  +  
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~--~--   71 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA--F--   71 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc--c--
Confidence            34444556678999999999999888654 33   35789999987655432    1   12234456543 110  0  


Q ss_pred             hhhccCCccEEEecCCCCCc
Q 011347          425 LIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       425 l~~~~g~~DLVIGGpPCQ~F  444 (488)
                         ..+.+|+|+.....+-+
T Consensus        72 ---~~~sfD~Vi~~~~l~~~   88 (194)
T TIGR02081        72 ---PDKSFDYVILSQTLQAT   88 (194)
T ss_pred             ---CCCCcCEEEEhhHhHcC
Confidence               11357877776554433

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK04148 hypothetical protein; Provisional

Probab=85.88  E-value=2.5  Score=39.08  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             CCcccccCCCCCh-hHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          355 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       355 ~itVLDLFSGiGG-lslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      +.+++++=+|-|. ++..|.++|++   |.++|+++.+.+..+..       +..+..+|+.+-+.+       -+.++|
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~   79 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK   79 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence            4789999999776 78889999985   67899999987666532       334677888765543       134666


Q ss_pred             EEEecC
Q 011347          434 FVICQN  439 (488)
Q Consensus       434 LVIGGp  439 (488)
                      +|.-.-
T Consensus        80 liysir   85 (134)
T PRK04148         80 LIYSIR   85 (134)
T ss_pred             EEEEeC
Confidence            665433

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=85.68  E-value=0.96  Score=48.44  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +.+||||-||.|.++..|-+.+-   .|+++|+++.+...-+..  +.......++..|+.+.... +     ..+.+|+
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~  106 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL  106 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence            45899999999999999988764   368999999876543321  11111222455676532210 1     1247999


Q ss_pred             EEecCCCCCcc
Q 011347          435 VICQNSVPQIP  445 (488)
Q Consensus       435 VIGGpPCQ~FS  445 (488)
                      |+...++.-++
T Consensus       107 I~~~~~l~~l~  117 (475)
T PLN02336        107 IFSNWLLMYLS  117 (475)
T ss_pred             EehhhhHHhCC
Confidence            99888766543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=85.26  E-value=1.1  Score=41.67  Aligned_cols=81  Identities=19%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhh-ccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~-~~g~  431 (488)
                      ++.+||||-|+-||++..+.+.+-.-..|++||+.+..           ..++...+.+||.+... +.|..... ..+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence            45899999999999998888777333568999998872           12233355788876533 22333222 1268


Q ss_pred             ccEEE--ecCCCCCcc
Q 011347          432 IDFVI--CQNSVPQIP  445 (488)
Q Consensus       432 ~DLVI--GGpPCQ~FS  445 (488)
                      +|+|+  |+++|++..
T Consensus        92 ~dlv~~D~~~~~~g~~  107 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDR  107 (181)
T ss_dssp             ESEEEE-------SSH
T ss_pred             cceeccccccCCCCch
Confidence            99988  456777653

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=85.22  E-value=2.7  Score=44.20  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCe-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~-~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||+.|+-||=+.-+-++.-+ -..|+|+|+++.-.+.++.+-...+.....+...|-+.+...     ....+.|
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~-----~~~~~~f  230 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL-----LPGGEKF  230 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc-----ccccCcC
Confidence            4688999999999998877776543 234699999999888888766544333322333443333221     1111249


Q ss_pred             cEEEecCCCCCccccC
Q 011347          433 DFVICQNSVPQIPNSK  448 (488)
Q Consensus       433 DLVIGGpPCQ~FS~an  448 (488)
                      |-|.-=+||.+.....
T Consensus       231 D~iLlDaPCSg~G~ir  246 (355)
T COG0144         231 DRILLDAPCSGTGVIR  246 (355)
T ss_pred             cEEEECCCCCCCcccc
Confidence            9999999999988754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=84.94  E-value=1.5  Score=42.99  Aligned_cols=96  Identities=22%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             cCcchhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc
Q 011347          338 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  416 (488)
Q Consensus       338 vdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~  416 (488)
                      ...++..+.-|+  ...+.+|||+-||.|=++.-|-.+ | +.-.|++||+++......+.+....+..+..+..+|...
T Consensus        58 P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~  134 (209)
T PF01135_consen   58 PSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE  134 (209)
T ss_dssp             HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred             HHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence            345566666666  457899999999999777666654 4 222478999999977776766654433333456677543


Q ss_pred             cChhhHHHhhhccCCccEEEecCCCCCc
Q 011347          417 LTTKKFESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       417 L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                      --.        ..++||.|+-+.-|...
T Consensus       135 g~~--------~~apfD~I~v~~a~~~i  154 (209)
T PF01135_consen  135 GWP--------EEAPFDRIIVTAAVPEI  154 (209)
T ss_dssp             TTG--------GG-SEEEEEESSBBSS-
T ss_pred             ccc--------cCCCcCEEEEeeccchH
Confidence            221        23689998877766543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=84.64  E-value=2.1  Score=41.32  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      +.+-+|||+=||.|-....|.+. +.  ..+.++|+++.+.+..+.+
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~   86 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY   86 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh
Confidence            45678999999999999999876 22  2478999999998888753

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=84.40  E-value=3.3  Score=32.85  Aligned_cols=67  Identities=22%  Similarity=0.272  Sum_probs=45.0

Q ss_pred             cccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEEe
Q 011347          359 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  437 (488)
Q Consensus       359 LDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIG  437 (488)
                      ||+=||.|-....|.+. +.   .++++|+++...+..+......   +..+...|+.++.-.        -+.||+|+.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence            57778999999999988 54   4789999999887777654322   222667888777422        257999985


Q ss_pred             cC
Q 011347          438 QN  439 (488)
Q Consensus       438 Gp  439 (488)
                      ..
T Consensus        67 ~~   68 (95)
T PF08241_consen   67 NS   68 (95)
T ss_dssp             ES
T ss_pred             cc
Confidence            54

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=84.11  E-value=2.1  Score=41.96  Aligned_cols=77  Identities=19%  Similarity=0.211  Sum_probs=52.0

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH
Q 011347          345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE  423 (488)
Q Consensus       345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie  423 (488)
                      |+.+.++-+.+-+||||=||-|-+-.-|.. .+..   ..++|+|+......-       ..|..++.+|+.+    .+.
T Consensus         4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv-------~rGv~Viq~Dld~----gL~   69 (193)
T PF07021_consen    4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACV-------ARGVSVIQGDLDE----GLA   69 (193)
T ss_pred             HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHH-------HcCCCEEECCHHH----hHh
Confidence            455666777889999999999988777765 5543   678999999754442       2355577788753    222


Q ss_pred             HhhhccCCccEEEe
Q 011347          424 SLIHKLGSIDFVIC  437 (488)
Q Consensus       424 ~l~~~~g~~DLVIG  437 (488)
                      .+  .-+.||.||-
T Consensus        70 ~f--~d~sFD~VIl   81 (193)
T PF07021_consen   70 DF--PDQSFDYVIL   81 (193)
T ss_pred             hC--CCCCccEEeh
Confidence            11  1156888774

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=83.89  E-value=3.5  Score=42.97  Aligned_cols=73  Identities=12%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             cccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEEE
Q 011347          357 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  436 (488)
Q Consensus       357 tVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVI  436 (488)
                      +||||=||.|=+.+.+.+..=+ .-+.-+|+|..|.+.-+.++..++-.+..+...|+.+    .+      .+.||+||
T Consensus       161 ~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v------~~kfd~Ii  229 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PV------EGKFDLII  229 (300)
T ss_pred             cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cc------cccccEEE
Confidence            8999999999777777665422 3466799999999999888764333332334444431    11      13799999


Q ss_pred             ecCC
Q 011347          437 CQNS  440 (488)
Q Consensus       437 GGpP  440 (488)
                      .-||
T Consensus       230 sNPP  233 (300)
T COG2813         230 SNPP  233 (300)
T ss_pred             eCCC
Confidence            8887

>TIGR00417 speE spermidine synthase

Probab=83.75  E-value=3.3  Score=41.43  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      ++-+||+|.+|.|++...+.+.+ ....+..||+|+...+..+.++..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~  118 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS  118 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence            44599999999999887776654 234578899999988888876543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK06922 hypothetical protein; Provisional

Probab=83.47  E-value=2.1  Score=48.86  Aligned_cols=86  Identities=20%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347          348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      +.++. .+.+|||+.||.|.+...+.+.. +-.-++++|+++.+....+...... .....++.+|+.++.. .+     
T Consensus       413 i~d~~-~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~dLp~-~f-----  483 (677)
T PRK06922        413 ILDYI-KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAINLSS-SF-----  483 (677)
T ss_pred             Hhhhc-CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHhCcc-cc-----
Confidence            33444 46799999999999987776542 2234789999999877776532211 1112234567665431 11     


Q ss_pred             ccCCccEEEecCCCC
Q 011347          428 KLGSIDFVICQNSVP  442 (488)
Q Consensus       428 ~~g~~DLVIGGpPCQ  442 (488)
                      ..+.||+|+..++-+
T Consensus       484 edeSFDvVVsn~vLH  498 (677)
T PRK06922        484 EKESVDTIVYSSILH  498 (677)
T ss_pred             CCCCEEEEEEchHHH
Confidence            125799999776543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=82.66  E-value=2.9  Score=42.59  Aligned_cols=76  Identities=17%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +-+||++=+|.|+++..|-+.|-.   |.++|+|+..+.+++.....  .....++.+|+-+++-..+.       .++.
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~-------~~~~   98 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLA-------QPYK   98 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhc-------CCCE
Confidence            578999999999999999998853   78999999999999864321  11223677899887754321       5677


Q ss_pred             EEecCCCC
Q 011347          435 VICQNSVP  442 (488)
Q Consensus       435 VIGGpPCQ  442 (488)
                      |+|--|=+
T Consensus        99 vVaNlPY~  106 (259)
T COG0030          99 VVANLPYN  106 (259)
T ss_pred             EEEcCCCc
Confidence            88777654

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=82.18  E-value=2.8  Score=41.82  Aligned_cols=41  Identities=24%  Similarity=0.169  Sum_probs=34.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK  396 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~  396 (488)
                      +.+-+||..=||-|==.+-|...|++   |++||+++.|++.+.
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~   82 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFF   82 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHH
Confidence            34578999988888878888999986   689999999987753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=81.84  E-value=2.3  Score=37.37  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=34.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHH
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI  394 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t  394 (488)
                      .+.+.+|||+=||.|.+...|...|++   ++++|+++.....
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFE---VTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSE---EEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHhh
Confidence            456789999999999999999999984   6789999987544

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=81.68  E-value=3.8  Score=40.27  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceecccccc
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQAL  417 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L  417 (488)
                      .+.+.+|||+=||.|.....+.+. ..+---++++|+++...+..+......+.. ...++.+|+.++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~  121 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI  121 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence            356788999999999988777652 111123789999998887776644322111 122455666544

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=80.53  E-value=3.8  Score=44.69  Aligned_cols=72  Identities=17%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCcccccCCCCChhHHHHHHcC----CeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhcc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLG----IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aG----i~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      ...|+|+=||-|-+....-+||    -.. -|+|||.++.|..+++..-...+- ....++.+|++++...+        
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~-~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe--------  257 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAV-KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE--------  257 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCES-EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCe-EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence            4779999999999987665555    333 478999999998887542111111 22346779999887532        


Q ss_pred             CCccEEE
Q 011347          430 GSIDFVI  436 (488)
Q Consensus       430 g~~DLVI  436 (488)
                       ++||||
T Consensus       258 -kvDIIV  263 (448)
T PF05185_consen  258 -KVDIIV  263 (448)
T ss_dssp             --EEEEE
T ss_pred             -ceeEEE
Confidence             689876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=80.22  E-value=1  Score=45.94  Aligned_cols=99  Identities=19%  Similarity=0.290  Sum_probs=61.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH--HHhhhcCCCC-CcceeccccccChhhHHHhhhcc-
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK--RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL-  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~--~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~-  429 (488)
                      .+-+|||-+.|-|=.++.--+.|-.  -|..||.|+.-...-+  -|-.. -+.. ..++.+|+.++        +..+ 
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~-l~~~~i~iilGD~~e~--------V~~~~  202 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRE-LFEIAIKIILGDAYEV--------VKDFD  202 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCcc-ccccccEEecccHHHH--------HhcCC
Confidence            5789999999999888777778863  2678999987432111  11110 0111 12445665432        2233 


Q ss_pred             -CCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 011347          430 -GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR  482 (488)
Q Consensus       430 -g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~  482 (488)
                       ..||.||--||  -||.|+.               +...  .+|.|++|||+.
T Consensus       203 D~sfDaIiHDPP--RfS~Age---------------LYse--efY~El~RiLkr  237 (287)
T COG2521         203 DESFDAIIHDPP--RFSLAGE---------------LYSE--EFYRELYRILKR  237 (287)
T ss_pred             ccccceEeeCCC--ccchhhh---------------HhHH--HHHHHHHHHcCc
Confidence             35999999999  6776542               3332  378889998863

>PRK11524 putative methyltransferase; Provisional

Probab=80.12  E-value=2.2  Score=43.06  Aligned_cols=42  Identities=21%  Similarity=0.178  Sum_probs=35.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  397 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~  397 (488)
                      ..+=.|||-|+|.|.-.++-+++|=   ..+++|+++..+++.+.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~  248 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLR  248 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHH
Confidence            4566799999999999999999994   46899999988776543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=80.10  E-value=3.1  Score=42.89  Aligned_cols=41  Identities=29%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      ++++||.=||.|=++.-|-++|..   |.++|..+.+.++++..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~---V~GID~s~~~V~vA~~h  130 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQ---VTGIDASDDMVEVANEH  130 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCe---eEeecccHHHHHHHHHh
Confidence            688999999999999999999964   78999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	7e-10
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-05
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	2e-05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 7e-13
 Identities = 84/543 (15%), Positives = 161/543 (29%), Gaps = 181/543 (33%)

Query: 10  MGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQ 69
           +  S     +A++   S     ++  KIF    +L+     S +TV    +     ++ Q
Sbjct: 158 VLGSGKTW-VALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQ----KLLYQ 208

Query: 70  SRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW 129
                TS +      K            +             +P +  L      L +  
Sbjct: 209 IDPNWTSRSDHSSNIKLR-IHSIQAELRRLLK---------SKPYENCLLV----LLNVQ 254

Query: 130 EEKVKPNSSRYGMQQAFNSNPCRSI----NKVVAQPPYFFYGNVVDVSIDCWVKMSHFLY 185
             K            AFN + C+ +     K V         + +  +    + + H   
Sbjct: 255 NAKA---------WNAFNLS-CKILLTTRFKQVT--------DFLSAATTTHISLDHHSM 296

Query: 186 SLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEP----PMTIQDAIPHTKKWWPS-W 240
           +L P+    +  S L +   YL   P      +P E     P  +   I  + +   + W
Sbjct: 297 TLTPD----EVKSLLLK---YLDCRPQD----LPREVLTTNPRRL-SIIAESIRDGLATW 344

Query: 241 DTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRD------ILHRSEK-----L 289
           D  KH++C            ++   ++  S  VL   + R       +   S       L
Sbjct: 345 DNWKHVNC------------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 290 NLVWVGAYKLGPVDPEHIE-------LILGYPSNHT-----------------QAAGNSL 325
           +L+W   + +   D   +        L+   P   T                  A   S+
Sbjct: 393 SLIW---FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 326 TARLESLRHCFQTDT-------------LGYHLSVLK-----SMFPGGLTMLSVFSGIGG 367
                  +  F +D              +G+HL  ++     ++F        VF     
Sbjct: 450 VDHYNIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR------MVF----- 497

Query: 368 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK---KFES 424
             +    L  K+            R     W  S      L Q++  +        K+E 
Sbjct: 498 --LDFRFLEQKI------------RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 425 LIHKLGSIDFVICQNSVPQIPNSK-----QISNSKDPKMAAESDNLPDFDFSLYYEFVRV 479
           L++ +  +DF+        +  SK     +I+      + AE +       +++ E  + 
Sbjct: 544 LVNAI--LDFL--PKIEENLICSKYTDLLRIA------LMAEDE-------AIFEEAHKQ 586

Query: 480 VQR 482
           VQR
Sbjct: 587 VQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 76/550 (13%), Positives = 152/550 (27%), Gaps = 161/550 (29%)

Query: 10  MGFSENQVSLAIEKFGSKTPISELADKI---FSGQIFLDTPR----SRSYDTVKVKTEYC 62
           M F   +      ++  K  +S   D     F  +   D P+        D +       
Sbjct: 7   MDFETGEH-----QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-----IM 56

Query: 63  SPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSS 122
           S D VS + ++  +  S+ +   +++ ++      +F     +  ++          +  
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 123 SFLDSSWEEKVKPNSSR----------------------YGM----QQAFNSNPCRSINK 156
             L +  +   K N SR                       G+    +     + C S  K
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YK 175

Query: 157 VVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNL--PTTN 214
           V  +  +  +          W+ + +      PE V       L   +  L+ +    T+
Sbjct: 176 VQCKMDFKIF----------WLNLKN---CNSPETV-------LEMLQKLLYQIDPNWTS 215

Query: 215 RFHIPPEPPMTIQDAIPHTKKWWPS-------------WDTRKHLSCINSGTSGISQLCE 261
           R        + I       ++   S              +  K  +  N         C 
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLS-------C- 266

Query: 262 RFEKLL---RDS----------RGVLSSQQQRDILHRSEKLNLV--WVG--AYKLGP--- 301
              K+L   R               +S       L   E  +L+  ++      L P   
Sbjct: 267 ---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREV 322

Query: 302 --VDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL-----KSMFPG 354
              +P  + +I     +      N      + L    ++      L+VL     + MF  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMF-- 375

Query: 355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-----TNRRILKRWWESSGQTGELV 409
               LSVF     A +    L +    VI  +            ++++  + S      +
Sbjct: 376 --DRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-----TI 426

Query: 410 QIEDIQALTTKKFESL--IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD 467
            I  I      K E+   +H+               I +   I  + D       D +P 
Sbjct: 427 SIPSIYLELKVKLENEYALHR--------------SIVDHYNIPKTFDS-----DDLIPP 467

Query: 468 FDFSLYYEFV 477
           +    +Y  +
Sbjct: 468 YLDQYFYSHI 477

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query: 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 415
           + +LS+F GI    + L  LGI++   I+ E  E +  +           G+++ + D++
Sbjct: 17  IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----HQGKIMYVGDVR 71

Query: 416 ALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFS 471
           ++T K  +    + G  D VI    C +          +S     +       L +    
Sbjct: 72  SVTQKHIQ----EWGPFDLVIGGSPCND----------LSIVNPARK-----GLYEGTGR 112

Query: 472 LYYEFVRVVQRVR 484
           L++EF R++   R
Sbjct: 113 LFFEFYRLLHDAR 125

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 32/193 (16%)

Query: 160 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 219
           +P ++ + NVV + +     +S FL S  P  ++++  SA  R   +  NLP  NR    
Sbjct: 132 RPFFWLFENVVAMGVSDKRDISRFLES-NPVMIDAKEVSAAHRARYFWGNLPGMNRPL-- 188

Query: 220 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 279
                T+ D +   +        +                  +   +   S  +   + Q
Sbjct: 189 ---ASTVNDKLELQECLEHGRIAKF----------------SKVRTITTRSNSIKQGKDQ 229

Query: 280 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 339
              +  +EK +++W             +E + G+P ++T  +  S  AR   L   +   
Sbjct: 230 HFPVFMNEKEDILW----------CTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVP 279

Query: 340 TLGYHLSVLKSMF 352
            + +  + LK  F
Sbjct: 280 VIRHLFAPLKEYF 292

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 160 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH-- 217
            P ++ + + + ++ +     S FL   EP  +   +  +L        N+P     H  
Sbjct: 278 GPFFWMFVDNLVLNKEDLDVASRFLEM-EPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWA 336

Query: 218 IPPEPPMTIQDAIPHTKKWWPSWD 241
           +  E  +++      + K    W 
Sbjct: 337 LVSEEELSLLAQNKQSSKLAAKWP 360

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVI-----SIETSETNRRILKRWWESSGQTGELVQ 410
           L ++ +FSG+GG  +   R G  +K  +     +I T   N                L  
Sbjct: 3   LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------------RSLHV 50

Query: 411 IEDIQALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQ-ISNSKDPKMAAESDNL 465
            ED+  L  +  +        ID +I    CQ        S     N  D +      N 
Sbjct: 51  QEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ------GFSSIGKGNPDDSR------N- 97

Query: 466 PDFDFSLYYEFVRVVQRVR 484
                 LY  F R+V  ++
Sbjct: 98  -----QLYMHFYRLVSELQ 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	99.94
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.93
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.9
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.9
3me5_A	482	Cytosine-specific methyltransferase; structural ge	99.9
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	99.89
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	99.89
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	99.89
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	99.88
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	99.86
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.8
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.79
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	99.79
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	99.75
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.59
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.49
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.43
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	98.98
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.98
3me5_A	482	Cytosine-specific methyltransferase; structural ge	98.9
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.88
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.81
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	98.71
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	98.41
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.21
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.93
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.91
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	97.85
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.77
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.76
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.74
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.69
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	97.62
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.52
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.52
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.48
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.46
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.46
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.45
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.43
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.41
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.4
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.34
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.26
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.22
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.2
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.19
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.17
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.07
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.06
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.01
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.01
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.01
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.98
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.97
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.97
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.96
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.94
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.94
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.94
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.9
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.88
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.86
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.86
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.83
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.75
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	96.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.69
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.64
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.63
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.6
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.58
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.57
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.56
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.56
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.55
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.5
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.49
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.47
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.46
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.46
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	96.42
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.4
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.37
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.33
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.32
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.32
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.31
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.28
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.27
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.26
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.25
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.23
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.21
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	96.21
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	96.19
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	96.18
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.17
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.16
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.16
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.14
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.07
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	95.99
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.99
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.95
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.92
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	95.91
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.89
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	95.85
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.81
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	95.79
2qm3_A	373	Predicted methyltransferase; putative methyltransf	95.79
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.77
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.77
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	95.71
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	95.71
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.69
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.68
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	95.67
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	95.66
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.6
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.59
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	95.59
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	95.57
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.55
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	95.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	95.52
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	95.51
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	95.5
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	95.49
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	95.47
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.47
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.43
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.4
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	95.4
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	95.39
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.38
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.37
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.36
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	95.35
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.35
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	95.3
1xxl_A	239	YCGJ protein; structural genomics, protein structu	95.29
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	95.29
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	95.29
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.28
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	95.27
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	95.26
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	95.25
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	95.17
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.16
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	95.16
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	95.14
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.11
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	95.01
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.01
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	95.0
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	94.98
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	94.95
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	94.95
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	94.94
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	94.93
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.93
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	94.92
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	94.91
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	94.91
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	94.84
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	94.8
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.79
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	94.79
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	94.78
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	94.72
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	94.71
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	94.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	94.69
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	94.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	94.62
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	94.59
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	94.59
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	94.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	94.56
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	94.54
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	94.53
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	94.51
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.5
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	94.48
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	94.44
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	94.38
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	94.37
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	94.36
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	94.33
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	94.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.25
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	94.24
3lkd_A	542	Type I restriction-modification system methyltrans	94.24
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	94.24
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	94.22
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	94.21
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	94.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	94.08
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	94.07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	94.05
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	94.05
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	94.0
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	93.95
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	93.92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	93.92
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	93.92
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	93.92
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	93.9
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	93.89
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	93.89
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	93.84
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	93.81
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	93.8
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	93.77
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	93.73
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	93.71
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	93.67
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	93.67
3cc8_A	230	Putative methyltransferase; structural genomics, j	93.66
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	93.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	93.54
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.54
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	93.54
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	93.49
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	93.49
3ocj_A	305	Putative exported protein; structural genomics, PS	93.49
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	93.43
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	93.4
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	93.33
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	93.33
3khk_A	544	Type I restriction-modification system methylation	93.31
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	93.28
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	93.08
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	93.01
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	92.85
2b25_A	336	Hypothetical protein; structural genomics, methyl	92.85
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	92.84
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	92.77
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	92.63
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	92.52
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	92.43
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	92.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	92.4
2o07_A	304	Spermidine synthase; structural genomics, structur	92.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	92.27
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	92.23
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	92.23
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	92.14
2i7c_A	283	Spermidine synthase; transferase, structural genom	92.1
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	92.05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	91.85
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	91.61
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	91.6
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	91.58
2pt6_A	321	Spermidine synthase; transferase, structural genom	91.34
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	91.34
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	91.32
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	91.09
3i9f_A	170	Putative type 11 methyltransferase; structural gen	91.06
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	90.79
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	90.74
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	90.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	90.58
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	90.47
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	90.31
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	90.27
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	90.19
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	90.19
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	90.09
2oo3_A	283	Protein involved in catabolism of external DNA; st	89.88
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	89.87
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	89.86
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	89.48
3ege_A	261	Putative methyltransferase from antibiotic biosyn	89.44
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	89.41
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	89.36
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	89.34
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	89.26
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	89.11
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	88.98
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	88.76
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	88.41
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	88.11
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	87.84
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	87.76
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	87.72
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	87.51
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	87.18
3ufb_A	530	Type I restriction-modification system methyltran	87.15
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	87.09
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	87.09
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	85.09
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	85.09
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	84.59
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	84.46
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	84.12
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	83.76
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	83.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.36
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	83.24
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	82.91
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	82.72
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	82.21
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	81.67
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	81.02
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	80.22
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	80.08

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=99.94  E-value=3e-27  Score=233.50  Aligned_cols=105  Identities=17%  Similarity=0.342  Sum_probs=92.8

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  435 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV  435 (488)
                      |+||||||||||+++||++|||  ++++++|+|+.|+++|+.+|.      ..++.+||++++.+++       +++|||
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence            6899999999999999999998  468999999999999987652      2367799999998765       579999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      +||||||+||.+|+            +.|++|+|+.||++|+|+|+++||.+
T Consensus        66 ~ggpPCQ~fS~ag~------------~~g~~d~R~~L~~~~~r~i~~~~Pk~  105 (331)
T 3ubt_Y           66 IGGPPSQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF  105 (331)
T ss_dssp             ECCCCGGGTEETTE------------ECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred             EecCCCCCcCCCCC------------ccCCCCchhHHHHHHHHHHhccCCeE
Confidence            99999999998864            35789999999999999999999974

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.93  E-value=7.1e-26  Score=226.07  Aligned_cols=116  Identities=22%  Similarity=0.366  Sum_probs=101.4

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+++||||||||||+++||+++||++++|+++|+|+.|+++|+.++     ++..++.+||++++.+++++    ++
T Consensus        12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~----~~   82 (295)
T 2qrv_A           12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQE----WG   82 (295)
T ss_dssp             CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHH----TC
T ss_pred             ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcc----cC
Confidence            4567899999999999999999999998877999999999999998754     34446789999999987764    37


Q ss_pred             CccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347          431 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  486 (488)
Q Consensus       431 ~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~  486 (488)
                      ++|||+||||||+||.+|+           ++.|++|+|+.||++|+|+|+++||.
T Consensus        83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence            8999999999999999863           23578999999999999999999986

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.90  E-value=1.9e-24  Score=218.37  Aligned_cols=118  Identities=19%  Similarity=0.327  Sum_probs=98.1

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeE-EEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~v-vsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      +|.++...+++||||||||||+++||+++||+++++ +++|+|+.|+++|+.+|..     . ++.+||++++.++|.. 
T Consensus         2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~-   74 (327)
T 3qv2_A            2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIES-   74 (327)
T ss_dssp             ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHH-
T ss_pred             CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhcc-
Confidence            355666778999999999999999999999877889 9999999999999987642     2 5679999999988764 


Q ss_pred             hhccCCccEEEecCCCCCc--cccCCCCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hccc
Q 011347          426 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSMK  487 (488)
Q Consensus       426 ~~~~g~~DLVIGGpPCQ~F--S~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvR-IV~~v--r~~~  487 (488)
                          .++|||+||||||+|  |.+|+            +.|++|+|+.||++|+| +|+++  ||.+
T Consensus        75 ----~~~Dil~ggpPCQ~fs~S~ag~------------~~~~~d~r~~L~~~~~r~~i~~~~~~P~~  125 (327)
T 3qv2_A           75 ----LNCNTWFMSPPCQPYNNSIMSK------------HKDINDPRAKSVLHLYRDILPYLINKPKH  125 (327)
T ss_dssp             ----TCCCEEEECCCCTTCSHHHHTT------------TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred             ----CCCCEEEecCCccCcccccCCC------------CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence                279999999999999  87754            35688999999999999 99998  7763

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.90  E-value=3.1e-24  Score=217.20  Aligned_cols=111  Identities=14%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      .++||||||||||+++||+++|+..++|+++|+|+.|+++|+.+|.     +..+..+||++++.+++..     .++||
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~-----~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKK-----WNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhcc-----CCCCE
Confidence            4789999999999999999999988899999999999999988653     3335679999999988764     37999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-ccc
Q 011347          435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SMK  487 (488)
Q Consensus       435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr-~~~  487 (488)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|++++ |.+
T Consensus        73 l~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~~P~~  114 (333)
T 4h0n_A           73 ILMSPPCQPFTRNGK------------YLDDNDPRTNSFLYLIGILDQLDNVDY  114 (333)
T ss_dssp             EEECCCCCCSEETTE------------ECCTTCTTSCCHHHHHHHGGGCTTCCE
T ss_pred             EEecCCCcchhhhhh------------ccCCcCcccccHHHHHHHHHHhcCCCE
Confidence            999999999998864            35688999999999999999997 753

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=99.90  E-value=2.6e-24  Score=227.89  Aligned_cols=125  Identities=17%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh--------H-HHh
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL  425 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~--------I-e~l  425 (488)
                      .++||||||||||+++||+++|+  ++|+++|+|+.|+++|+.+|..  .++..++.+||++++.+.        + +.+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            58999999999999999999997  5799999999999999987632  234456779999887422        1 112


Q ss_pred             hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 011347          426 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       426 ~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~-D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      ....+++|||+||||||+||.+|+.++.    -.+.+.|++ |+|+.||++|+|+|+.++|.+
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~  222 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM  222 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred             hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence            2345789999999999999999864321    012335665 899999999999999999864

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=99.89  E-value=6.1e-24  Score=218.11  Aligned_cols=113  Identities=20%  Similarity=0.302  Sum_probs=92.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      .++||||||||||+++||+++|+  +++++||+|+.|+++|+.++.     +..++.+||++++.+++.......+++||
T Consensus         2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            48999999999999999999997  468999999999999987653     34467899999998877543223468999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      |+||||||+||.+|+             .+.+|+|+.||++|+|+|+++||.+
T Consensus        75 i~ggpPCQ~fS~ag~-------------~~~~d~r~~L~~~~~~~v~~~~P~~  114 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGK-------------GNPDDSRNQLYMHFYRLVSELQPLF  114 (376)
T ss_dssp             EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCCCCcccccC-------------CCCCCchHHHHHHHHHHHHHhCCCE
Confidence            999999999998864             2578999999999999999999974

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=99.89  E-value=2.1e-23  Score=210.35  Aligned_cols=106  Identities=19%  Similarity=0.319  Sum_probs=92.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+++|||||||+||+++||+++|+  +++++||+|+.|+++|+.+|...      . .+||++++.+.+       +++|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D   73 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence            568999999999999999999997  56999999999999999877432      1 689999987654       4799


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      ||+||||||+||.+|+            +.|++|+|+.||++|+|+|+++||.+
T Consensus        74 ~l~~gpPCQ~fS~ag~------------~~g~~d~r~~L~~~~~r~i~~~~P~~  115 (327)
T 2c7p_A           74 ILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             EEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             EEEECCCCCCcchhcc------------cCCCcchhhHHHHHHHHHHHhccCcE
Confidence            9999999999998864            35688999999999999999999864

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=99.89  E-value=6e-24  Score=233.88  Aligned_cols=122  Identities=17%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCC----eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHH----
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----  424 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi----~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~----  424 (488)
                      .+.++|||||||||||++||++||.    .+++++|||+|+.|++||+.+     ++.+.+..+||.++....++.    
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N-----hp~~~~~~~di~~i~~~~~~~~~~~  284 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN-----HPQTEVRNEKADEFLALLKEWAVLC  284 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH-----CTTSEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH-----CCCCceecCcHHHhhhhhhhccccc
Confidence            3569999999999999999999982    246799999999999999874     445556778887764432221    


Q ss_pred             --------------------------------------------------------------------------------
Q 011347          425 --------------------------------------------------------------------------------  424 (488)
Q Consensus       425 --------------------------------------------------------------------------------  424 (488)
                                                                                                      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~  364 (784)
T 4ft4_B          285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF  364 (784)
T ss_dssp             HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence                                                                                            


Q ss_pred             --------hhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          425 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       425 --------l~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                              +....|++|||+||||||+||.+|+++        +...+++|+|+.||++|+|+|+++||..
T Consensus       365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~  427 (784)
T 4ft4_B          365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY  427 (784)
T ss_dssp             HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred             ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence                    011236899999999999999998743        1335688999999999999999999964

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=99.88  E-value=2.4e-23  Score=210.38  Aligned_cols=111  Identities=16%  Similarity=0.318  Sum_probs=81.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +++|||||||+||+++||+++|+++++|+++|+|+.|+++|+.++.     ...++.+||++++.+++..     .++|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~-----~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCc-----CCcCE
Confidence            4789999999999999999999877889999999999999998654     2335679999999877653     26999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--ccc
Q 011347          435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SMK  487 (488)
Q Consensus       435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr--~~~  487 (488)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|++++  |.+
T Consensus        72 l~~gpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~~~P~~  114 (343)
T 1g55_A           72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPKY  114 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCSE
T ss_pred             EEEcCCCcchhhcCC------------cCCccCccchHHHHHHHHHHHhcCCCCE
Confidence            999999999998864            35688999999999999999998  753

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=99.86  E-value=9.2e-23  Score=211.72  Aligned_cols=111  Identities=13%  Similarity=0.124  Sum_probs=89.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeee----EEEeeCCHHHHHHHHHHhhhcCCC---------------C-Cc-----
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-EL-----  408 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~----vvsVEid~~a~~t~~~~~~~~n~~---------------g-~l-----  408 (488)
                      ..++||||||||||+++||+++|+++++    |++||+|+.|+.+|+.+|......               + ..     
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~   88 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG   88 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence            4689999999999999999999975556    999999999999999988642100               0 00     


Q ss_pred             --------------------ceeccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCC-
Q 011347          409 --------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD-  467 (488)
Q Consensus       409 --------------------v~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D-  467 (488)
                                          ...+||++++.++++      +.+|||+||||||+||.+|+            +.|++| 
T Consensus        89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~------------~~g~~d~  150 (403)
T 4dkj_A           89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL------------QKGIDKE  150 (403)
T ss_dssp             HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC------------CCCCCGG
T ss_pred             cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC------------CCCCCcc
Confidence                                024888888876653      35899999999999998864            346776 


Q ss_pred             --CCcchHHHHHHHHHH
Q 011347          468 --FDFSLYYEFVRVVQR  482 (488)
Q Consensus       468 --~Rs~LF~EfvRIV~~  482 (488)
                        +|+.||++|+|+|++
T Consensus       151 ~~~r~~L~~~~~rii~~  167 (403)
T 4dkj_A          151 LNTRSGLLWEIERILEE  167 (403)
T ss_dssp             GCCSGGGHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHH
Confidence              999999999999998

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.80  E-value=1.2e-20  Score=214.08  Aligned_cols=119  Identities=21%  Similarity=0.248  Sum_probs=92.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh----HHHhh--
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK----FESLI--  426 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~----Ie~l~--  426 (488)
                      ...+++|||||||||+++||++|||. ++++++|+|+.|+.+|+.+|     ++..++.+||.++....    +....  
T Consensus       538 ~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          538 LPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence            46789999999999999999999983 57999999999999998754     44556778887764221    11111  


Q ss_pred             --hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          427 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       427 --~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                        ...+++|||+||||||+||.+|+..          ..+.+|+|+.||++|+|+|++++|.+
T Consensus       612 ~lp~~~~vDll~GGpPCQ~FS~ag~~~----------~~~~~d~R~~L~~~~~riv~~~rPk~  664 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF  664 (1002)
T ss_dssp             BCCCTTTCSEEEECCCCTTCCSSSCCC----------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred             hcccCCCeeEEEEcCCCcchhhhCCCC----------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence              1235899999999999999987521          12356889999999999999999864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.79  E-value=1.3e-20  Score=218.58  Aligned_cols=118  Identities=21%  Similarity=0.286  Sum_probs=91.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH----H----h
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L  425 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie----~----l  425 (488)
                      ..+++|||||||||+++||++|||. ++++++|+|+.|+++|+.+|     ++..++.+||.++....+.    .    .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~-~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGIS-ETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSE-EEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CCceEEecccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            5689999999999999999999983 67999999999999998754     3444566788766432210    0    0


Q ss_pred             hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          426 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       426 ~~~~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      +...+++|||+||||||+||.+|+.+          ..+.+|+|+.||++|+|+|+++||.+
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~~----------~~~~~d~R~~L~~~~lriv~~~rPk~  975 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF  975 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCCC----------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred             ccccCccceEEecCCCcccccccccc----------cccccchhhHHHHHHHHHHHHhcCcE
Confidence            11125799999999999999987521          12356889999999999999999864

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.79  E-value=4.9e-20  Score=178.99  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=70.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ++++||||||||||   ||++|||++                +     .|+++..++.+||++|+.++|++    ++++|
T Consensus        32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D   83 (230)
T 2qrv_B           32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD   83 (230)
T ss_dssp             CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred             CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence            56899999999998   899999863                1     23445556789999999988764    47899


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347          434 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  486 (488)
Q Consensus       434 LVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~  486 (488)
                      ||+||||||+||.+                   ++|++||+||+|||+++||+
T Consensus        84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk  117 (230)
T 2qrv_B           84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  117 (230)
T ss_dssp             EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence            99999999999965                   25789999999999999996

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=99.75  E-value=7.2e-19  Score=181.50  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=74.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      -.++++||||||||||   ||++|||++                     +.|+++..++.+||++|+.++|++    +++
T Consensus       186 ~~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~  237 (386)
T 2pv0_B          186 RRQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGP  237 (386)
T ss_dssp             GCCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCC
T ss_pred             hhcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCC
Confidence            3457999999999997   999999864                     135556556789999999988764    478


Q ss_pred             ccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 011347          432 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  486 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~  486 (488)
                      +|||+||||||+||.+                   |+|++||+||+|||+++||+
T Consensus       238 ~DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk  273 (386)
T 2pv0_B          238 FDLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  273 (386)
T ss_dssp             CSEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence            9999999999999965                   35889999999999999996

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.59  E-value=2.5e-15  Score=150.02  Aligned_cols=157  Identities=20%  Similarity=0.308  Sum_probs=116.5

Q ss_pred             ccccccccccchhhHHHHhhhhccCCceeeeccccCcccccccccccCCCCCCCCCCC-CCCCcccccccCCCccCCCcC
Q 011347          163 YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWPSWD  241 (488)
Q Consensus       163 fF~fENV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsAa~R~RgY~hNLP~~nR~~~~p-~~p~tiqd~lp~~~~~wp~wd  241 (488)
                      ||++|||..+-...+.+|.++|. ..+.++||..|.||+|+|.||.++|...+....+ .+.+|++|+|...+.+     
T Consensus       135 ~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~-----  208 (295)
T 2qrv_A          135 FWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA-----  208 (295)
T ss_dssp             EEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE-----
T ss_pred             EEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc-----
Confidence            88999999998888888999996 5999999999999999999999999876522111 1368999999865432     


Q ss_pred             CCcccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccc
Q 011347          242 TRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAA  321 (488)
Q Consensus       242 ~r~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~  321 (488)
                      ...++++|++.+..+..           .++              +.+..  ..+++.+.|++.|+.||+|||++|+..+
T Consensus       209 ~~~~~~~i~~~~~~~~~-----------g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~~~~  261 (295)
T 2qrv_A          209 KFSKVRTITTRSNSIKQ-----------GKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYTDVS  261 (295)
T ss_dssp             SSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTTCCT
T ss_pred             ccCccccccCCCceecC-----------CCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHeeCC
Confidence            23455565543211110           000              01111  2357789999999999999999999998


Q ss_pred             CCChHHHHHhhhhhcccCcchhhhccccccC
Q 011347          322 GNSLTARLESLRHCFQTDTLGYHLSVLKSMF  352 (488)
Q Consensus       322 ~l~~teR~k~Lgnsfqvdti~~~lsvLK~~f  352 (488)
                      ++|.++++|.+||+..++.+..+...|++++
T Consensus       262 ~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l  292 (295)
T 2qrv_A          262 NMSRLARQRLLGRSWSVPVIRHLFAPLKEYF  292 (295)
T ss_dssp             TCCHHHHHHHHHTSCCHHHHHHHHGGGGGGS
T ss_pred             CcCHHHHhccEecCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998888765

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.49  E-value=4.5e-15  Score=150.21  Aligned_cols=177  Identities=13%  Similarity=0.131  Sum_probs=113.9

Q ss_pred             CCCccccccccccch-hhHHHHhhhh----ccCCceeeecccc-Cccccccccc----ccCCCC--------CCCCCCCC
Q 011347          160 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE  221 (488)
Q Consensus       160 ~ppfF~fENV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~----hNLP~~--------nR~~~~p~  221 (488)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||.+| .||+|+|.|+    ..++..        ..+|..+.
T Consensus       111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~  190 (333)
T 4h0n_A          111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG  190 (333)
T ss_dssp             TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred             CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence            399999999998864 3577777777    7788999999999 9999999997    222221        01121122


Q ss_pred             CCCcccccccCC-----------CccCCCcCCCc--ccce--eeccCC------ch------hHHHHHHHHHHhhccCCC
Q 011347          222 PPMTIQDAIPHT-----------KKWWPSWDTRK--HLSC--INSGTS------GI------SQLCERFEKLLRDSRGVL  274 (488)
Q Consensus       222 ~p~tiqd~lp~~-----------~~~wp~wd~r~--kl~c--i~t~~~------~~------~~l~~~i~~~~~~~~~~~  274 (488)
                      .+.+|.|+|+..           .+||..+|-.+  ..+|  .+....      ++      ....+++-+.+....+  
T Consensus       191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~--  268 (333)
T 4h0n_A          191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI--  268 (333)
T ss_dssp             SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT--
T ss_pred             ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC--
Confidence            257899999531           14555555222  1111  111110      00      0011222221211110  


Q ss_pred             chhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347          275 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  349 (488)
Q Consensus       275 ~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK  349 (488)
                      ..+.|.           .+..+.+++.|+|.|++||+|||++||....+|.++|||.+|||..|++++++.+.|.
T Consensus       269 G~~~~~-----------~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~  332 (333)
T 4h0n_A          269 GGEKFV-----------ELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF  332 (333)
T ss_dssp             TCHHHH-----------HHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             Ccccce-----------eeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence            011111           2234678999999999999999999998788999999999999999999999987763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.43  E-value=1.9e-14  Score=145.45  Aligned_cols=178  Identities=15%  Similarity=0.161  Sum_probs=117.4

Q ss_pred             CCCccccccccccch-hhHHHHhhhh----ccCCceeeecccc-Cccccccccc-ccCCCCCCCCCC--CCCCCcccccc
Q 011347          160 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI  230 (488)
Q Consensus       160 ~ppfF~fENV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~-hNLP~~nR~~~~--p~~p~tiqd~l  230 (488)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||.+| .||+|+|.|+ +....- .+|..  +.+..+|+|+|
T Consensus       122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~f-~fP~~~~~~~~~~l~d~L  200 (327)
T 3qv2_A          122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTPF-KNEIQLHQEKESMISNYL  200 (327)
T ss_dssp             CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSCC-CSCCCCCCCSCCCGGGGC
T ss_pred             CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCCC-CCCCcccccccccHHHHh
Confidence            799999999998864 4677787777    6788999999999 9999999994 444331 12211  11358899999


Q ss_pred             cC--------CCccCCCcCCC--------cccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeee
Q 011347          231 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV  294 (488)
Q Consensus       231 p~--------~~~~wp~wd~r--------~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~  294 (488)
                      +.        ..+||..|...        ++-.|++..+   +..       ....++.+.....    ......++++.
T Consensus       201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~~----~~~~~~~~~~~  266 (327)
T 3qv2_A          201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIEP----HFIPVKKAEDL  266 (327)
T ss_dssp             CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSCS----SCCCCSSGGGG
T ss_pred             cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeecccc----cccccCCceee
Confidence            73        22233322211        0111222111   000       0001111100000    00012246677


Q ss_pred             cccccCCCChhhHHHHhcCCCCCccc-cCCChHHHHHhhhhhcccCcchhhhccccccC
Q 011347          295 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  352 (488)
Q Consensus       295 g~~~~~ple~~E~E~i~GfP~~~T~~-~~l~~teR~k~Lgnsfqvdti~~~lsvLK~~f  352 (488)
                      .+++++.|+|.|+.||+|||++|+.. .++|.+++||.+|||..++++..+...|+++.
T Consensus       267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l  325 (327)
T 3qv2_A          267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL  325 (327)
T ss_dssp             TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred             cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence            88999999999999999999999987 68999999999999999999999998887653

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=98.98  E-value=1.4e-10  Score=120.41  Aligned_cols=185  Identities=13%  Similarity=0.153  Sum_probs=111.3

Q ss_pred             CCCCccccccccccchh----hHHHHhhhh----ccCCceeeecccc-Ccccccccccc------cCCCCCCC---CCCC
Q 011347          159 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIPP  220 (488)
Q Consensus       159 ~~ppfF~fENV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~h------NLP~~nR~---~~~p  220 (488)
                      .+|.||++|||..+-..    .|..|.+.|    |.+++.++||..| .||+|.|.|+=      ..|.....   .++.
T Consensus       176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~  255 (403)
T 4dkj_A          176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK  255 (403)
T ss_dssp             GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred             cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence            78999999999998653    466676666    5689999999999 99999999962      12221110   0111


Q ss_pred             CCCCcccccccCC--CccC-------CCc-CCCcccceeec-cCCchhHHHHHHHHHHhhccC-CCchhhhHHHHHhhcc
Q 011347          221 EPPMTIQDAIPHT--KKWW-------PSW-DTRKHLSCINS-GTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSEK  288 (488)
Q Consensus       221 ~~p~tiqd~lp~~--~~~w-------p~w-d~r~kl~ci~t-~~~~~~~l~~~i~~~~~~~~~-~~~~~~q~~vl~~c~k  288 (488)
                      .++.+|.|+|+..  .+|-       |.. ..+.++.+..+ ......+  +  +++.. ..+ .++...      .+..
T Consensus       256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~-~~~~~~Tlt~------~~~~  324 (403)
T 4dkj_A          256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYN-INGIGPTLTA------SGAN  324 (403)
T ss_dssp             CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEE-TTSBBCCCCS------SSGG
T ss_pred             cccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceec-CCCcccceec------CCCC
Confidence            2357999999743  1211       100 00111111000 0000000  0  00000 000 000000      0111


Q ss_pred             cceeeecccccCCCChhhHHHHhcCCC-CCcccc--C-CChHHHHHhhhhhcccCcchhhhccccccCCC
Q 011347          289 LNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG  354 (488)
Q Consensus       289 ~nlvW~g~~~~~ple~~E~E~i~GfP~-~~T~~~--~-l~~teR~k~Lgnsfqvdti~~~lsvLK~~fp~  354 (488)
                      .-++-....+++.|+|.|+.||+|||+ +|....  + ++.+++||.+|||..|+++..++..|+..+.+
T Consensus       325 ~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~  394 (403)
T 4dkj_A          325 SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE  394 (403)
T ss_dssp             GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred             ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence            223333567899999999999999999 687653  3 79999999999999999999999888876654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.98  E-value=4.6e-11  Score=117.82  Aligned_cols=192  Identities=17%  Similarity=0.179  Sum_probs=101.4

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-Cccccccccc----ccCCCCCCCCCCCCCCC
Q 011347          158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM  224 (488)
Q Consensus       158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~----hNLP~~nR~~~~p~~p~  224 (488)
                      ..+|.||++|||..+-.    ..+..|.+.|    |.+.+.++||.+| .||+|+|.|+    .+++..--+|.......
T Consensus       100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~  179 (331)
T 3ubt_Y          100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (331)
T ss_dssp             HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred             ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence            45899999999987743    4566666666    6799999999999 9999999997    33333322222111256


Q ss_pred             cccccccCCC-ccCCCcCCCcc--cceeecc----CC--chhHHH-HHHHHH------HhhccCCCc-hhhhHHHHHhhc
Q 011347          225 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG----TS--GISQLC-ERFEKL------LRDSRGVLS-SQQQRDILHRSE  287 (488)
Q Consensus       225 tiqd~lp~~~-~~wp~wd~r~k--l~ci~t~----~~--~~~~l~-~~i~~~------~~~~~~~~~-~~~q~~vl~~c~  287 (488)
                      |+.|++.... .-+|.+++...  ..++...    ..  ...... .+.+..      +..++.... ......+...++
T Consensus       180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 3ubt_Y          180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK  259 (331)
T ss_dssp             CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred             cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence            7777762110 01111111000  0000000    00  000000 000000      000000000 000000000011


Q ss_pred             ccceee-ecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccc
Q 011347          288 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  350 (488)
Q Consensus       288 k~nlvW-~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~  350 (488)
                      ..+-.+ ..++..+.||+.|+.||+|||++|+.- +.+.++++|.+||+..+....++...++.
T Consensus       260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~-~~s~~~~ykqiGNAVpp~la~~I~~~I~~  322 (331)
T 3ubt_Y          260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (331)
T ss_dssp             TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEeC-CCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence            111111 134557999999999999999999863 35899999999999988887777665544

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=98.90  E-value=1.5e-09  Score=115.28  Aligned_cols=177  Identities=13%  Similarity=0.236  Sum_probs=105.1

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCC---------ceeeeccccCccccccccc----ccCCCCCCC
Q 011347          158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF  216 (488)
Q Consensus       158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~---------Pe~Vds~~fsAa~R~RgY~----hNLP~~nR~  216 (488)
                      ..+|.||++|||..+-.    ..+..|.+.|    |.+.         +.++||++|.||+|.|.|+    .+++....|
T Consensus       217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F  296 (482)
T 3me5_A          217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF  296 (482)
T ss_dssp             HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred             HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence            46899999999999854    3566676666    4443         6799999999999999997    244332222


Q ss_pred             C------CCCCCCCcccccccCCCccCCCcCCCcccceeeccCCchhHHHHHHHHHH----hhccCC----CchhhhHHH
Q 011347          217 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV----LSSQQQRDI  282 (488)
Q Consensus       217 ~------~~p~~p~tiqd~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~~i~~~~----~~~~~~----~~~~~q~~v  282 (488)
                      .      ..|.++.||.|+|....      +  .|.  ..+     .++-+.+.+.-    .+.+++    ...+...  
T Consensus       297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~--  359 (482)
T 3me5_A          297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ--  359 (482)
T ss_dssp             CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred             CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence            2      23555678999996321      0  000  000     01111111100    000000    0000000  


Q ss_pred             HHhhcc---------ccee----e-------------ecccccCCCChhhHHHHhcCCCC--CccccCCChHHHHHhhhh
Q 011347          283 LHRSEK---------LNLV----W-------------VGAYKLGPVDPEHIELILGYPSN--HTQAAGNSLTARLESLRH  334 (488)
Q Consensus       283 l~~c~k---------~nlv----W-------------~g~~~~~ple~~E~E~i~GfP~~--~T~~~~l~~teR~k~Lgn  334 (488)
                       ..|+.         .+++    |             ....+++.|||.|++||+|||+.  ++..+.++.+++||.+||
T Consensus       360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN  438 (482)
T 3me5_A          360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN  438 (482)
T ss_dssp             -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred             -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence             00100         1111    1             01357899999999999999943  334458999999999999


Q ss_pred             hcccCcchhhhccccccC
Q 011347          335 CFQTDTLGYHLSVLKSMF  352 (488)
Q Consensus       335 sfqvdti~~~lsvLK~~f  352 (488)
                      +..|+++..+...|+.++
T Consensus       439 sV~v~v~~~i~~~l~~~l  456 (482)
T 3me5_A          439 SVVVPVFAAVAKLLEPKI  456 (482)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHH
Confidence            999999998887776543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.88  E-value=1.6e-09  Score=109.16  Aligned_cols=183  Identities=13%  Similarity=0.100  Sum_probs=104.0

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeecccc-CcccccccccccCC-CCCC-CCCCCC---CC
Q 011347          158 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPE---PP  223 (488)
Q Consensus       158 ~~~ppfF~fENV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~hNLP-~~nR-~~~~p~---~p  223 (488)
                      ..+|.||++|||..+-.    ..|..|.+.|    |.++..++||..| .||+|.|.|+=..- ..+. ....|.   ..
T Consensus       110 ~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~  189 (327)
T 2c7p_A          110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELN  189 (327)
T ss_dssp             HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCC
T ss_pred             hccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCC
Confidence            35899999999998854    3566776666    6788999999999 99999999984321 1110 011233   25


Q ss_pred             CcccccccCC---CccCCCcCCCcccceeeccC-CchhHHHHHH--HHHH--hhc-cCCCchhhhHHHHHh----hcc-c
Q 011347          224 MTIQDAIPHT---KKWWPSWDTRKHLSCINSGT-SGISQLCERF--EKLL--RDS-RGVLSSQQQRDILHR----SEK-L  289 (488)
Q Consensus       224 ~tiqd~lp~~---~~~wp~wd~r~kl~ci~t~~-~~~~~l~~~i--~~~~--~~~-~~~~~~~~q~~vl~~----c~k-~  289 (488)
                      .|+.|+|...   ..|..+..  .++-.+.... +......+.+  .+..  .+. -+.+...    |...    +.+ .
T Consensus       190 ~tl~d~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T----i~~~~~~~~~~~~  263 (327)
T 2c7p_A          190 TFVKDLLLPDSEVEHLVIDRK--DLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAIT----LSAYGGGIFAKTG  263 (327)
T ss_dssp             CCGGGTCCCGGGTGGGEECCT--TCEECSCCCSSCCSSCCEEEESTTCCTTCEEEETTSCBCC----CCSSCCSTTTTTC
T ss_pred             CcHHHHhcccCCcccccccCC--cceeEeeccccCccchhhhhhccCCccccccccCCCCcCc----eecCCCCccCCCC
Confidence            7899998521   11110000  0000000000 0000000000  0000  000 0000000    0000    111 1


Q ss_pred             ceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccc
Q 011347          290 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  350 (488)
Q Consensus       290 nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~  350 (488)
                      +.+.  +.+.+.|++.|+.||+|||++|+.  ..+.++++|.+||+..+.....+...|+.
T Consensus       264 ~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~  320 (327)
T 2c7p_A          264 GYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             EEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            2222  678899999999999999999997  57999999999999999888877666654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.81  E-value=5.1e-09  Score=105.77  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             cccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccc
Q 011347          295 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  348 (488)
Q Consensus       295 g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvL  348 (488)
                      .+.+.+.|++.|+.||+|||++|+..++++.++++|.+||+..|+.+..++..|
T Consensus       288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l  341 (343)
T 1g55_A          288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence            466789999999999999999999876789999999999999999888776544

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.71  E-value=2.7e-09  Score=103.85  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=45.1

Q ss_pred             CCccccccccccchhhHHHHhhhhccCCceeeeccccCcccccccccccCCCCCC
Q 011347          161 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR  215 (488)
Q Consensus       161 ppfF~fENV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsAa~R~RgY~hNLP~~nR  215 (488)
                      |.||++|||..|-..+...|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus       123 P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~  176 (230)
T 2qrv_B          123 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS  176 (230)
T ss_dssp             CCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred             CcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence            3467899999998888899999994 89999999999999999999999998865

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=98.41  E-value=2.5e-07  Score=102.08  Aligned_cols=55  Identities=7%  Similarity=0.042  Sum_probs=44.2

Q ss_pred             ccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhh
Q 011347          288 KLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH  344 (488)
Q Consensus       288 k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~  344 (488)
                      ..+..++-+.+.+.|||.|+.||+|||++|+..  -+.++++|.+||+.-+.....+
T Consensus       679 ~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~--Gs~~~~ykQIGNAVpp~lA~aI  733 (784)
T 4ft4_B          679 PHNQVIIHPTQARVLTIRENARLQGFPDYYRLF--GPIKEKYIQVGNAVAVPVARAL  733 (784)
T ss_dssp             SSSSEEECSSSSSBCCHHHHHHHTTCCTTCCCC--SCHHHHHHHHHHSCCHHHHHHH
T ss_pred             CCCCeecCCCCCcCCcHHHHHHHCCCCCCCEeC--CCHHHHHhhccCCCCHHHHHHH
Confidence            334455567788999999999999999999874  4899999999999766654444

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.21  E-value=6e-07  Score=92.17  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=40.4

Q ss_pred             ccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347          296 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  349 (488)
Q Consensus       296 ~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK  349 (488)
                      +.+-++|++-|+-||+|||++|...  .+.++.++.+||+.-+.....+-..++
T Consensus       313 P~~~R~lTvRE~ARlQsFPD~f~f~--g~~~~~~~qIGNAVPp~la~aia~~I~  364 (376)
T 3g7u_A          313 PYHPRVITPREAARLQGFPDWFRFH--VTKWHSFRQIGNSVSPIVAEYILKGLY  364 (376)
T ss_dssp             SSSSSBCCHHHHHHHHTCCTTCCCC--SSHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             CccCcCCCHHHHHHhCCCCcceEEC--CChHHhheeeecCCCHHHHHHHHHHHH
Confidence            4567999999999999999999884  578888999999976554444433333

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.93  E-value=2.4e-05  Score=78.66  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=61.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||||||.|++++.+.+.|.   .|++||+++.+.+..+.+....+...  ..++.+|+.++...    +....+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~  225 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST  225 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence            457899999999999999999986   37899999999999888765433221  23556777654221    1112357


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      ||+|+..|||.+.+
T Consensus       226 fD~Ii~dPP~~~~~  239 (332)
T 2igt_A          226 YDIILTDPPKFGRG  239 (332)
T ss_dssp             BSEEEECCCSEEEC
T ss_pred             ceEEEECCccccCC
Confidence            99999999997655

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.91  E-value=2.8e-05  Score=79.05  Aligned_cols=86  Identities=19%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-C-CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~-g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||||||+|++++.+.+.|.  ..|++||+++.+.+..+.+....+. . ...++.+|+.++..    .+....+.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~  293 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK  293 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence            567899999999999999999884  3588999999999998887654322 2 22355677665422    11112357


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      ||+|+..||+...|
T Consensus       294 fD~Ii~dpP~~~~~  307 (396)
T 3c0k_A          294 FDVIVMDPPKFVEN  307 (396)
T ss_dssp             EEEEEECCSSTTTC
T ss_pred             CCEEEECCCCCCCC
Confidence            99999999987665

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=97.85  E-value=9.1e-06  Score=84.30  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             CCccccccccccchhhHHHHhhhhccCCceeeeccccCcccccccccccCCCCCCC
Q 011347          161 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF  216 (488)
Q Consensus       161 ppfF~fENV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsAa~R~RgY~hNLP~~nR~  216 (488)
                      |.||++|||..|..+...+|.+||. +++.+|||.+|.+++|+|-||+|+|++++.
T Consensus       279 P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~  333 (386)
T 2pv0_B          279 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR  333 (386)
T ss_dssp             CCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred             CcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence            4478999999998888889999995 899999999997776666699999999873

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.77  E-value=4.7e-05  Score=70.67  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|+++..|.+.|.   .|+++|+++.+.+..+.+....+. ....++.+|+.++..         .+.|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~  145 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---------FLKA  145 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---------GCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---------cCCC
Confidence            467899999999999999999984   368999999998888876543321 122345677765431         2589


Q ss_pred             cEEEecCCCCCccc
Q 011347          433 DFVICQNSVPQIPN  446 (488)
Q Consensus       433 DLVIGGpPCQ~FS~  446 (488)
                      |+|+..+||..+..
T Consensus       146 D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          146 DVVFLSPPWGGPDY  159 (241)
T ss_dssp             SEEEECCCCSSGGG
T ss_pred             CEEEECCCcCCcch
Confidence            99999999998774

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.76  E-value=8.1e-05  Score=67.29  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||++||.|+++..+.+.|..  .++++|+++.+.+..+.+....+. ...++.+|+.++.           +.+|
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D  114 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  114 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence            4578999999999999999998853  478999999999888876543322 2335567777653           3699


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+..||+...+
T Consensus       115 ~v~~~~p~~~~~  126 (207)
T 1wy7_A          115 IVIMNPPFGSQR  126 (207)
T ss_dssp             EEEECCCCSSSS
T ss_pred             EEEEcCCCcccc
Confidence            999999976554

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.74  E-value=3.5e-05  Score=76.28  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=60.7

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhcc
Q 011347          351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+..+-+|||+|||+|++++.+-+.|-  .-|+++|+|+.|.+.++.+-..++-.+. .++.+|.+++..         .
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~  190 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E  190 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence            345678999999999999998877774  2378999999999999887654332222 245677776543         2


Q ss_pred             CCccEEEecCCCCC
Q 011347          430 GSIDFVICQNSVPQ  443 (488)
Q Consensus       430 g~~DLVIGGpPCQ~  443 (488)
                      +.+|.|+-++|+-.
T Consensus       191 ~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          191 NIADRILMGYVVRT  204 (278)
T ss_dssp             SCEEEEEECCCSSG
T ss_pred             cCCCEEEECCCCcH
Confidence            57999999999654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.69  E-value=6.1e-05  Score=73.03  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+-+|||+|||.|++++.+.+.|..  .|+++|+++.+.+..+.+....+..+ ..++.+|+.++..         .+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~  192 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI  192 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence            45789999999999999999998864  47899999999988887665333222 2256688877653         257


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      ||+|+..+|+..
T Consensus       193 fD~Vi~~~p~~~  204 (278)
T 2frn_A          193 ADRILMGYVVRT  204 (278)
T ss_dssp             EEEEEECCCSSG
T ss_pred             ccEEEECCchhH
Confidence            999999999653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=97.62  E-value=7.4e-05  Score=85.67  Aligned_cols=47  Identities=6%  Similarity=-0.014  Sum_probs=38.1

Q ss_pred             cccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhh
Q 011347          297 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHL  345 (488)
Q Consensus       297 ~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~l  345 (488)
                      .+.+.|++.|+.||+|||++|...  -+.+++++.+||+.-+.....+.
T Consensus       945 ~~~R~lt~rE~arlQ~fPd~~~f~--g~~~~~~~qiGNaVp~~~~~~i~  991 (1002)
T 3swr_A          945 EQHRVVSVRECARSQGFPDTYRLF--GNILDKHRQVGNAVPPPLAKAIG  991 (1002)
T ss_dssp             SSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHHHH
T ss_pred             ccccCCCHHHHHHhCCCCcceEEc--CChHHHheeeeccCCHHHHHHHH
Confidence            356889999999999999999884  48889999999997665444443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.52  E-value=0.00017  Score=62.41  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ++.+-+|||+.||.|.+...+.+.|..   ++++|+++.+.+..+.+....+. ...+..+|+.+..    ..+....+.
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~  110 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER  110 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence            345678999999999999999999864   88999999998888876544322 2234556665421    111111247


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|+..+|..
T Consensus       111 ~D~i~~~~~~~  121 (171)
T 1ws6_A          111 FTVAFMAPPYA  121 (171)
T ss_dssp             EEEEEECCCTT
T ss_pred             eEEEEECCCCc
Confidence            99999988854

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.52  E-value=0.0001  Score=66.08  Aligned_cols=81  Identities=19%  Similarity=0.354  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||+||.|++++.+...|.  ..|+++|+++.+.+..+.+....+.....++.+|+.++...    +  ..+.||
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD  115 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD  115 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence            467899999999999997777775  34889999999999888876544322233556776544211    0  126899


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+..+|..
T Consensus       116 ~i~~~~p~~  124 (189)
T 3p9n_A          116 LVLADPPYN  124 (189)
T ss_dssp             EEEECCCTT
T ss_pred             EEEECCCCC
Confidence            999988854

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.48  E-value=0.00028  Score=71.94  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||||||.|++++.+-+.|.  .-|++||+++.+.+..+.+....+..  ...++.+|+.+.    +..+......
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~  285 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  285 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence            457899999999999999988875  35889999999999888876543322  223556776542    2222112247


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      ||+|+.-||+-+.|
T Consensus       286 fD~Ii~DPP~~~~~  299 (385)
T 2b78_A          286 YDIIIIDPPSFARN  299 (385)
T ss_dssp             EEEEEECCCCC---
T ss_pred             ccEEEECCCCCCCC
Confidence            99999999986443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.46  E-value=0.00024  Score=70.97  Aligned_cols=76  Identities=13%  Similarity=0.163  Sum_probs=56.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+-+|||||||+|++++. .+ |-  ..|+++|+++.+.+..+.+....+. ....++.+|+.++.           +.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~  258 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK  258 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence            4567899999999999988 55 42  3588999999999998887654322 12335667776553           47


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      +|+|+..||...
T Consensus       259 fD~Vi~dpP~~~  270 (336)
T 2yx1_A          259 GNRVIMNLPKFA  270 (336)
T ss_dssp             EEEEEECCTTTG
T ss_pred             CcEEEECCcHhH
Confidence            999999988653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.46  E-value=0.00026  Score=68.53  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=59.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ...+-+|||+|||.|++++.+-+.+-. .-|+++|+++.+.+..+.+....+..+..++.+|+.++ ..        .+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~  186 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV  186 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence            346778999999999999988876422 24789999999999888776543323334667888776 32        247


Q ss_pred             ccEEEecCCC
Q 011347          432 IDFVICQNSV  441 (488)
Q Consensus       432 ~DLVIGGpPC  441 (488)
                      +|+|+-.+|.
T Consensus       187 ~D~Vi~d~p~  196 (272)
T 3a27_A          187 ADRVIMGYVH  196 (272)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEECCcc
Confidence            9999999986

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.45  E-value=0.00015  Score=69.92  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||++||.||.+..+..+  |-  ..|+++|+++...+.++.+....+.....+..+|+.++...    +....+.
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~  156 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF  156 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence            5678999999999999887763  31  24789999999988888766544332333455666544321    0011357


Q ss_pred             ccEEEecCCCCCcccc
Q 011347          432 IDFVICQNSVPQIPNS  447 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS~a  447 (488)
                      ||+|+..+||.++...
T Consensus       157 fD~Vl~d~Pcs~~g~~  172 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIK  172 (274)
T ss_dssp             EEEEEEEECCC-----
T ss_pred             CCEEEEcCCCCCCccc
Confidence            9999999999987653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.43  E-value=0.00018  Score=66.01  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC--CCCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~--~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||++||.|++++.+-..|.  ..|+++|+++.+.+..+.+....+.  ....++.+|+.++...    +  ..+.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~  124 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQP  124 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCC
Confidence            356899999999999998767775  3488999999999888876654322  1223455666543210    0  1256


Q ss_pred             -ccEEEecCCC
Q 011347          432 -IDFVICQNSV  441 (488)
Q Consensus       432 -~DLVIGGpPC  441 (488)
                       ||+|+..+|.
T Consensus       125 ~fD~I~~~~~~  135 (201)
T 2ift_A          125 HFDVVFLDPPF  135 (201)
T ss_dssp             CEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence             9999998883

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.41  E-value=0.00018  Score=74.18  Aligned_cols=77  Identities=16%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+|||.|++++.+-+.|..   |++||+++.+.+..+.+....+... .+..+|+.++-    ..   ..+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~~---~~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----RG---LEGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----HT---CCCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----HH---hcCCCC
Confidence            4789999999999999999998863   8899999999988887665433222 23345554321    11   124599


Q ss_pred             EEEecCCC
Q 011347          434 FVICQNSV  441 (488)
Q Consensus       434 LVIGGpPC  441 (488)
                      +|+--|||
T Consensus       283 ~Ii~dpP~  290 (393)
T 4dmg_A          283 HVLLDPPT  290 (393)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999999

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.40  E-value=0.00022  Score=65.45  Aligned_cols=78  Identities=14%  Similarity=0.090  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||+||.|.+++.+-..|..  .|+++|+++.+.+..+.+....+.....++.+|+.++..       ...+.||
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD  124 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHN  124 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCC
Confidence            3568999999999999987777753  478999999999988877654332222345566544211       1125799


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+..+|
T Consensus       125 ~V~~~~p  131 (202)
T 2fpo_A          125 IVFVDPP  131 (202)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9999888

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.34  E-value=0.00042  Score=70.32  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||||||.|++++.+.+.|.  .-|+++|+++.+.+..+.+....+.. ...++.+|+.++..    .+....+.+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f  290 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF  290 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence            567899999999999999988875  35889999999999888876543221 22245566654321    121123579


Q ss_pred             cEEEecCCCCCcc
Q 011347          433 DFVICQNSVPQIP  445 (488)
Q Consensus       433 DLVIGGpPCQ~FS  445 (488)
                      |+|+.-||+-..+
T Consensus       291 D~Vi~dpP~~~~~  303 (396)
T 2as0_A          291 DIVVLDPPAFVQH  303 (396)
T ss_dssp             EEEEECCCCSCSS
T ss_pred             CEEEECCCCCCCC
Confidence            9999999975543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.26  E-value=0.00055  Score=61.75  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||++||.|++...+.+.|.  ..|+++|+++.+.+..+.+..     ...++.+|+.++.           +.+|
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence            457899999999999999988874  348899999999888776432     2335678887653           4799


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+..+|-..++
T Consensus       113 ~v~~~~p~~~~~  124 (200)
T 1ne2_A          113 TWIMNPPFGSVV  124 (200)
T ss_dssp             EEEECCCC----
T ss_pred             EEEECCCchhcc
Confidence            999998866544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.22  E-value=0.0008  Score=63.78  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|++.+.+.+.+-.  .|+++|+++.+.+..+.+....+..+ ..++.+|+.++... +     ..+.|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f  120 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA  120 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence            4678999999999999999888742  57899999999888887665433222 23566788765421 1     12589


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|+.-||+-..
T Consensus       121 D~Ii~npPy~~~  132 (259)
T 3lpm_A          121 DIVTCNPPYFAT  132 (259)
T ss_dssp             EEEEECCCC---
T ss_pred             cEEEECCCCCCC
Confidence            999999998766

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.20  E-value=0.00067  Score=68.70  Aligned_cols=85  Identities=20%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+|||.|++++.+.+.+   .-|+++|+++.+.+..+.+....+..+..++.+|+.++..    .+....+.+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence            46789999999999999888763   4588999999999888876654332223355667654321    1211235799


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+.-||+-+.|
T Consensus       282 ~Ii~dpP~~~~~  293 (382)
T 1wxx_A          282 LVVLDPPAFAKG  293 (382)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEECCCCCCCC
Confidence            999999985544

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.19  E-value=0.001  Score=60.99  Aligned_cols=83  Identities=14%  Similarity=0.152  Sum_probs=58.7

Q ss_pred             CCCCCcccccCCC-CChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          352 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       352 fp~~itVLDLFSG-iGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+.+|||+.|| .|.+.+.+.+. +.   .|+++|+++.+.+..+.+....+. ...++.+|+..+..  +.     .
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~-----~  121 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--VV-----E  121 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--TC-----C
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--cc-----c
Confidence            4567899999999 99999998887 54   378999999998888876554332 23356677654332  11     1


Q ss_pred             CCccEEEecCCCCCcc
Q 011347          430 GSIDFVICQNSVPQIP  445 (488)
Q Consensus       430 g~~DLVIGGpPCQ~FS  445 (488)
                      +.||+|+.-||+-...
T Consensus       122 ~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             SCEEEEEECCCCC---
T ss_pred             CceeEEEECCCCcCCc
Confidence            5799999999986654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.17  E-value=0.00054  Score=69.16  Aligned_cols=84  Identities=10%  Similarity=0.060  Sum_probs=58.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc------
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------  428 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~------  428 (488)
                      +-+|||||||+|++++.+.+.+   .-|+++|+++.+.+..+.+....+.....++.+|+.++..    .+...      
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence            4679999999999999988754   3478999999999988887654332233355677654321    11110      


Q ss_pred             ------cCCccEEEecCCCCCcc
Q 011347          429 ------LGSIDFVICQNSVPQIP  445 (488)
Q Consensus       429 ------~g~~DLVIGGpPCQ~FS  445 (488)
                            .+.||+|+--||..+..
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g~~  309 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSGLD  309 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTCCC
T ss_pred             cccccccCCCCEEEECcCccccH
Confidence                  03799999999987543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.07  E-value=0.001  Score=73.28  Aligned_cols=83  Identities=19%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||||||.|++++.+-..|..  -|++||+++.+.+..+.+...++..  ...++.+|+.+.-    .   ...+.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~  609 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ  609 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence            5678999999999999998888863  4889999999999888876543322  1224556665421    1   12257


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      ||+|+--|||-+-|
T Consensus       610 fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          610 FDLIFIDPPTFSNS  623 (703)
T ss_dssp             EEEEEECCCSBC--
T ss_pred             ccEEEECCccccCC
Confidence            99999999984333

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.06  E-value=0.0012  Score=65.42  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=61.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.||.+..+.+..-.-..|+++|+++...+..+.+....+.....+..+|+.++..        ..+.||
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  189 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD  189 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence            467899999999999988876421112478999999998888876654333233455677766542        125799


Q ss_pred             EEEecCCCCCcccc
Q 011347          434 FVICQNSVPQIPNS  447 (488)
Q Consensus       434 LVIGGpPCQ~FS~a  447 (488)
                      +|+.-+||.+....
T Consensus       190 ~Il~d~Pcsg~g~~  203 (315)
T 1ixk_A          190 KILLDAPCTGSGTI  203 (315)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEeCCCCCcccc
Confidence            99999999887653

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.01  E-value=0.0016  Score=57.18  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|++...+.+.|.  ..|+++|+++.+.+..+.+....+.. ...++.+|+.+...    .+....+.|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f  117 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF  117 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence            456899999999999998777764  34789999999988887765433211 12245567654321    111113679


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+..+|
T Consensus       118 D~i~~~~~  125 (187)
T 2fhp_A          118 DLVLLDPP  125 (187)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998877

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.01  E-value=0.0013  Score=68.28  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=59.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+-+|||||||.|.+++.|.+.+.   -|+++|+++.+.+..+.+....+.. ..++.+|+.++..+          .+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f  354 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF  354 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence            4567899999999999999988774   4789999999998888766443322 34567887765421          69


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|+--||..+.
T Consensus       355 D~Vv~dPPr~g~  366 (425)
T 2jjq_A          355 DTVIVDPPRAGL  366 (425)
T ss_dssp             SEEEECCCTTCS
T ss_pred             CEEEEcCCccch
Confidence            999998886543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.01  E-value=0.0011  Score=59.86  Aligned_cols=85  Identities=19%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347          347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      .|..+.+.+.+|||+.||.|.+...+.+.|.  ..++++|+++.+.+..+.+....+..+..+..+|+.+..        
T Consensus        53 ~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------  122 (205)
T 3grz_A           53 GIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------  122 (205)
T ss_dssp             HHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------
T ss_pred             HHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------
Confidence            3344445678999999999999999998875  347899999998888777654433222335567765432        


Q ss_pred             hccCCccEEEecCCCCC
Q 011347          427 HKLGSIDFVICQNSVPQ  443 (488)
Q Consensus       427 ~~~g~~DLVIGGpPCQ~  443 (488)
                        .+.+|+|+..+|.+.
T Consensus       123 --~~~fD~i~~~~~~~~  137 (205)
T 3grz_A          123 --DGKFDLIVANILAEI  137 (205)
T ss_dssp             --CSCEEEEEEESCHHH
T ss_pred             --CCCceEEEECCcHHH
Confidence              157999999877654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.98  E-value=0.0015  Score=62.40  Aligned_cols=80  Identities=9%  Similarity=0.061  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+.||.|.+...+...  +.   .++++|+++.+.+..+.+....+.....+..+|+.+..         ..+.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~  176 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQ  176 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCC
Confidence            4578999999999999988754  33   47899999999988887654433222334556765421         1257


Q ss_pred             ccEEEecCCCCCcc
Q 011347          432 IDFVICQNSVPQIP  445 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS  445 (488)
                      ||+|+.-|||.+.+
T Consensus       177 fD~Iv~npPy~~~~  190 (276)
T 2b3t_A          177 FAMIVSNPPYIDEQ  190 (276)
T ss_dssp             EEEEEECCCCBCTT
T ss_pred             ccEEEECCCCCCcc
Confidence            99999999998764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.97  E-value=0.0016  Score=57.70  Aligned_cols=84  Identities=14%  Similarity=0.140  Sum_probs=56.7

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347          348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      ++...+.+.+|||+.||.|.++..|.+.|.+   |+++|+++.+.+..+.+....+.....++.+|+..+..     +. 
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~---v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~~-   86 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGLSKK---VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----YV-   86 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTTSSE---EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----TC-
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----hc-
Confidence            3445567789999999999999999888653   78999999998888776544332222234455544321     11 


Q ss_pred             ccCCccEEEecCCC
Q 011347          428 KLGSIDFVICQNSV  441 (488)
Q Consensus       428 ~~g~~DLVIGGpPC  441 (488)
                       .+.||+|+..++.
T Consensus        87 -~~~fD~v~~~~~~   99 (185)
T 3mti_A           87 -REPIRAAIFNLGY   99 (185)
T ss_dssp             -CSCEEEEEEEEC-
T ss_pred             -cCCcCEEEEeCCC
Confidence             2579999876443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.97  E-value=0.0033  Score=62.55  Aligned_cols=81  Identities=15%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcC-CeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aG-i~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+|||.|++.+-+-..+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++...        .+.
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~--------~~~  272 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF--------FPE  272 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT--------CCC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc--------cCC
Confidence            346789999999999988776643 11 23689999999999888876654332233566788765421        246


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|+.-|||-
T Consensus       273 ~D~Ii~npPyg  283 (354)
T 3tma_A          273 VDRILANPPHG  283 (354)
T ss_dssp             CSEEEECCCSC
T ss_pred             CCEEEECCCCc
Confidence            89999999983

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.96  E-value=0.0016  Score=64.85  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||++||.||.++.+-.+ +=. ..|+++|+++...+.++.+....+.....++.+|..++....     ..++.|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence            4678999999999999887653 211 247899999999998888765443333345667887765321     113579


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |.|+--+||.++...
T Consensus       176 D~Vl~D~PcSg~G~~  190 (309)
T 2b9e_A          176 HYILLDPSCSGSGMP  190 (309)
T ss_dssp             EEEEECCCCCC----
T ss_pred             CEEEEcCCcCCCCCC
Confidence            999999999988754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.94  E-value=0.0013  Score=57.81  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||+.||.|.+...+.+.|.  ..|+++|+++.+.+..+.+....+.. ...++.+|+.+.    +.   ...+.|
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~---~~~~~f  101 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----ID---CLTGRF  101 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----HH---HBCSCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh----HH---hhcCCC
Confidence            456899999999999998888874  34789999999988888765433211 122344555432    11   112569


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |+|+..+|.
T Consensus       102 D~i~~~~~~  110 (177)
T 2esr_A          102 DLVFLDPPY  110 (177)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEECCCC
Confidence            999988774

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.94  E-value=0.00052  Score=61.22  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...+..+|+.+    .+.......+.|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence            46789999999999999999888422 2478999999988777654332211 12234455543    111111123789


Q ss_pred             cEEEecCCCCCcc
Q 011347          433 DFVICQNSVPQIP  445 (488)
Q Consensus       433 DLVIGGpPCQ~FS  445 (488)
                      |+|+..+|+-...
T Consensus       103 D~i~~npp~~~~~  115 (215)
T 4dzr_A          103 HAIVSNPPYIPTG  115 (215)
T ss_dssp             SEEEECCCCCC--
T ss_pred             cEEEECCCCCCCc
Confidence            9999999986554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.94  E-value=0.002  Score=60.31  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-c
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~-~  429 (488)
                      .+.+|||+.||.|++...+...  +.   .|+++|+++.+.+..+.+....+..+ ..++.+|+.+.-.+.+.   .. .
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~  138 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE  138 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence            5678999999999988776554  43   37899999999888887655433222 23566776652111111   00 1


Q ss_pred             CCccEEEecCCCCCcc
Q 011347          430 GSIDFVICQNSVPQIP  445 (488)
Q Consensus       430 g~~DLVIGGpPCQ~FS  445 (488)
                      +.||+|+..||+-...
T Consensus       139 ~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          139 IIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCBSEEEECCCCC---
T ss_pred             CcccEEEECCCCccCc
Confidence            4799999999987554

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.90  E-value=0.0015  Score=76.91  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             CCCCccccccccccchh----hHHHHhhhh----ccCCceeeecccc-Ccccccccccc
Q 011347          159 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH  208 (488)
Q Consensus       159 ~~ppfF~fENV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~h  208 (488)
                      .+|.||++|||..+-..    .+..|.+.|    |.+...++||..| .||+|.|.|+=
T Consensus       971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A          971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp             HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred             hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence            57999999999988532    455565554    6678899999999 99999999963

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.88  E-value=0.0023  Score=62.44  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=59.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+.||.|.+.+.+... +.   .|+++|+++.+.+..+.+....+..+ ..++.+|+.+.-.       ..++.
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-------~~f~~  192 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-------EKFAS  192 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-------GGTTT
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-------cccCC
Confidence            3468999999999999999877 43   47899999999998887665433222 3356677765211       12344


Q ss_pred             ccEEEecCCCCCccc
Q 011347          432 IDFVICQNSVPQIPN  446 (488)
Q Consensus       432 ~DLVIGGpPCQ~FS~  446 (488)
                      +|+|+.-|||-+.+.
T Consensus       193 ~D~IvsnPPyi~~~~  207 (284)
T 1nv8_A          193 IEMILSNPPYVKSSA  207 (284)
T ss_dssp             CCEEEECCCCBCGGG
T ss_pred             CCEEEEcCCCCCccc
Confidence            499999999987764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.86  E-value=0.0013  Score=68.20  Aligned_cols=80  Identities=9%  Similarity=0.015  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhh-c
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~-~  428 (488)
                      .+.+|||||||.|++++-+-..  |.  .-|++||+++.+.+.++.+-..++-.+  ..++.+|+.++        +. .
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~  121 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE  121 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence            4678999999999998865552  42  458899999999999998765432211  22344554332        22 2


Q ss_pred             -cCCccEEEecCCCCC
Q 011347          429 -LGSIDFVICQNSVPQ  443 (488)
Q Consensus       429 -~g~~DLVIGGpPCQ~  443 (488)
                       .+.||+|+--|||..
T Consensus       122 ~~~~fD~V~lDP~g~~  137 (392)
T 3axs_A          122 WGFGFDYVDLDPFGTP  137 (392)
T ss_dssp             CSSCEEEEEECCSSCC
T ss_pred             hCCCCcEEEECCCcCH
Confidence             247999999887753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.86  E-value=0.0034  Score=63.46  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+.+|||++||.|++.+.+...|.. ..++++|+|+.+.+..+.+....+. ....+..+|+.++...        .+.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~--------~~~  286 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY--------VDS  286 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT--------CSC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc--------cCC
Confidence            45678999999999999998888752 1378999999999888877654332 1223556777765421        257


Q ss_pred             ccEEEecCCC
Q 011347          432 IDFVICQNSV  441 (488)
Q Consensus       432 ~DLVIGGpPC  441 (488)
                      +|+|+.-||.
T Consensus       287 fD~Ii~npPy  296 (373)
T 3tm4_A          287 VDFAISNLPY  296 (373)
T ss_dssp             EEEEEEECCC
T ss_pred             cCEEEECCCC
Confidence            9999998885

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.83  E-value=0.002  Score=60.62  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCcceeccccccChhhHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~--------n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      .+.+|||++||.|++.+.+.+.+-. ..+++||+++.+....+.+....        +.....++.+|+.+.-...+   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~---  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF---  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence            5678999999999999999887632 24789999999887776654321        22233356678765211111   


Q ss_pred             hhccCCccEEEecCCCCCc
Q 011347          426 IHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       426 ~~~~g~~DLVIGGpPCQ~F  444 (488)
                        ..+.+|.|+--.|...+
T Consensus       125 --~~~~~d~v~~~~p~p~~  141 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHF  141 (246)
T ss_dssp             --CTTCEEEEEEESCCCC-
T ss_pred             --cccccCEEEEECCCccc
Confidence              12578988877776443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.75  E-value=0.0016  Score=68.73  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||++||.||.++.+-.+ +=. -.|+++|+++...+.++.+....+.....+..+|..++.     ..  ..+.|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F  176 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF  176 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence            4679999999999999887654 211 137899999999998887765443322233445554432     11  12579


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |+|+--+||.+....
T Consensus       177 D~Il~DaPCSg~G~~  191 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMF  191 (456)
T ss_dssp             EEEEEECCCCCGGGT
T ss_pred             CEEEECCCCCCcccc
Confidence            999999999987753

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=96.69  E-value=0.0034  Score=64.86  Aligned_cols=85  Identities=15%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+||||+||.|.+++.|.+.+.   -|+++|+++.+.+..+.+....+.....++.+|+.+.-.. +   ....+.||
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~---~~~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-Q---PWAKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-S---GGGTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-h---hhhcCCCC
Confidence            456899999999999999988764   4789999999998888766443322344667888763221 0   00124799


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+--||..+..
T Consensus       359 ~Vv~dPPr~g~~  370 (433)
T 1uwv_A          359 KVLLDPARAGAA  370 (433)
T ss_dssp             EEEECCCTTCCH
T ss_pred             EEEECCCCccHH
Confidence            999999987654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.69  E-value=0.0039  Score=54.47  Aligned_cols=77  Identities=10%  Similarity=0.023  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+.||.|.+...+.+.|.   .++++|+++.+....+......+...  ..+..+|+.+...         .+.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~  119 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence            567899999999999999888864   37899999999888877654432222  3345567654321         257


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|+..+|-.
T Consensus       120 ~D~v~~~~~~~  130 (194)
T 1dus_A          120 YNKIITNPPIR  130 (194)
T ss_dssp             EEEEEECCCST
T ss_pred             ceEEEECCCcc
Confidence            99999876643

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.64  E-value=0.0024  Score=62.75  Aligned_cols=100  Identities=16%  Similarity=0.073  Sum_probs=61.8

Q ss_pred             HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347          330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  407 (488)
Q Consensus       330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~  407 (488)
                      |.+|..|-++  .+...+..+.  ...+-+|||+.||.|.++..|.+.|-   -|+++|+|+......+......+....
T Consensus        18 k~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v   92 (299)
T 2h1r_A           18 YFQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNL   92 (299)
T ss_dssp             -----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred             hccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            4556666332  2333333332  23567899999999999999988874   378999999998888775533222233


Q ss_pred             cceeccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347          408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                      .++.+|+.++.          ++.+|+|++-+|++..
T Consensus        93 ~~~~~D~~~~~----------~~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           93 EVYEGDAIKTV----------FPKFDVCTANIPYKIS  119 (299)
T ss_dssp             EC----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred             EEEECchhhCC----------cccCCEEEEcCCcccc
Confidence            35667877654          2468999999997744

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.63  E-value=0.0045  Score=56.03  Aligned_cols=77  Identities=22%  Similarity=0.326  Sum_probs=56.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+.+|||+-||.|.+...+.+.|.   .++++|+++...+..+......+ ....+..+|+.++..        ..+.
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~  103 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKT  103 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTC
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCc
Confidence            34478999999999999999999986   47899999998887776554322 233456678876541        1147


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      +|+|+..++
T Consensus       104 ~D~v~~~~~  112 (227)
T 1ve3_A          104 FDYVIFIDS  112 (227)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEcCc
Confidence            999987766

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.60  E-value=0.0029  Score=66.90  Aligned_cols=85  Identities=19%  Similarity=0.048  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+||||+||.||.+..+-.+ +=. -.|+++|+++...+.++.+....+.. ..+..+|..++.     ..  ..+.|
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~-g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~F  171 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGK-GLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYF  171 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTC-SEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccC
Confidence            5689999999999999888754 211 13789999999999988876554333 334456655432     11  12579


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |+|+--+||.+....
T Consensus       172 D~Il~D~PcSg~G~~  186 (464)
T 3m6w_A          172 HRVLLDAPCSGEGMF  186 (464)
T ss_dssp             EEEEEECCCCCGGGT
T ss_pred             CEEEECCCcCCcccc
Confidence            999999999987754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.58  E-value=0.0034  Score=65.46  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=58.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc--CCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~--n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +-+||||+||.|+.++.|-+.|.   -|++||+|+.+.+..+.+....  +.....++.+|+.+.-.. ++     .+.|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence            68899999999999999998885   3789999999999998877543  222233566888764211 11     1379


Q ss_pred             cEEEecCCCC
Q 011347          433 DFVICQNSVP  442 (488)
Q Consensus       433 DLVIGGpPCQ  442 (488)
                      |+|+--||=.
T Consensus       165 DvV~lDPPrr  174 (410)
T 3ll7_A          165 DYIYVDPARR  174 (410)
T ss_dssp             SEEEECCEEC
T ss_pred             eEEEECCCCc
Confidence            9999888744

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.57  E-value=0.0074  Score=54.43  Aligned_cols=81  Identities=17%  Similarity=0.085  Sum_probs=58.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+.||.|.+...|.+.|.   .|+++|+++...+..+.+....+.....+..+|+.+....        .+.|
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~  144 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA--------RAPF  144 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc--------CCCc
Confidence            3567899999999999999988874   3789999999988888766543333333566777654321        2579


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|+....+..+
T Consensus       145 D~i~~~~~~~~~  156 (210)
T 3lbf_A          145 DAIIVTAAPPEI  156 (210)
T ss_dssp             EEEEESSBCSSC
T ss_pred             cEEEEccchhhh
Confidence            999987665544

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.56  E-value=0.0035  Score=66.16  Aligned_cols=86  Identities=9%  Similarity=0.062  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||++||.||.+..+-.+ +-. -.|+++|+++...+.++.+....+.....+..+|..++...       ..+.|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-------~~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-------VPEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-------STTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-------ccccC
Confidence            5679999999999999887764 211 24789999999999888766543322333455676654210       12579


Q ss_pred             cEEEecCCCCCcccc
Q 011347          433 DFVICQNSVPQIPNS  447 (488)
Q Consensus       433 DLVIGGpPCQ~FS~a  447 (488)
                      |+|+--+||.+....
T Consensus       189 D~Il~D~PcSg~G~~  203 (479)
T 2frx_A          189 DAILLDAPCSGEGVV  203 (479)
T ss_dssp             EEEEEECCCCCGGGG
T ss_pred             CEEEECCCcCCcccc
Confidence            999999999987653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.56  E-value=0.0025  Score=65.31  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc---------------CCCCCcceecccccc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL  417 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~---------------n~~g~lv~~~DI~~L  417 (488)
                      .+.+|||||||.|++++.+-.. |- . -|+++|+++.+.+..+.+....               +.....++.+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~-~-~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPA-E-EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC-S-EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCC-C-eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            4678999999999999887664 52 2 3789999999999998876543               111112333444322


Q ss_pred             ChhhHHHhhhc-cCCccEEEecCCCC
Q 011347          418 TTKKFESLIHK-LGSIDFVICQNSVP  442 (488)
Q Consensus       418 ~~~~Ie~l~~~-~g~~DLVIGGpPCQ  442 (488)
                              ... .+.||+|+--|||.
T Consensus       125 --------~~~~~~~fD~I~lDP~~~  142 (378)
T 2dul_A          125 --------MAERHRYFHFIDLDPFGS  142 (378)
T ss_dssp             --------HHHSTTCEEEEEECCSSC
T ss_pred             --------HHhccCCCCEEEeCCCCC
Confidence                    222 24799999888886

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.55  E-value=0.0029  Score=61.66  Aligned_cols=78  Identities=17%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.++..|.+.|.   -|+++|+|+.....++......+. ....++.+|+.+++          ++.+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~----------~~~f   94 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----------LPFF   94 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----------CCCC
T ss_pred             CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc----------chhh
Confidence            567899999999999999998875   378999999998888765432211 12235668887653          1368


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|++..|++-.
T Consensus        95 D~vv~nlpy~~~  106 (285)
T 1zq9_A           95 DTCVANLPYQIS  106 (285)
T ss_dssp             SEEEEECCGGGH
T ss_pred             cEEEEecCcccc
Confidence            999999998754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.50  E-value=0.0025  Score=63.23  Aligned_cols=80  Identities=13%  Similarity=-0.030  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCe----eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIK----LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~----~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+.||.|++.+.+.+..-.    -..++++|+++.+.++.+.+....+. ...+..+|.....         ..
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~  199 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV  199 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence            4578999999999999887654311    13578999999998888775543322 2234556654321         12


Q ss_pred             CCccEEEecCCCCC
Q 011347          430 GSIDFVICQNSVPQ  443 (488)
Q Consensus       430 g~~DLVIGGpPCQ~  443 (488)
                      +.+|+|++-||..-
T Consensus       200 ~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          200 DPVDVVISDLPVGY  213 (344)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             CCccEEEECCCCCC
Confidence            57999999999743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.49  E-value=0.0055  Score=62.67  Aligned_cols=77  Identities=18%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||.||.|.+...+.+.|.+   |++||+++.+.+..+.+....+. ...++.+|+.+....        .+.||
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~---V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~--------~~~fD  300 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAE---VVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTE--------EARFD  300 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCE---EEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCT--------TCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhcccc--------CCCeE
Confidence            5678999999999999999998863   67899999999888877654322 233566787765431        25799


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+..+|..
T Consensus       301 ~Ii~npp~~  309 (381)
T 3dmg_A          301 IIVTNPPFH  309 (381)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCchh
Confidence            999988865

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.47  E-value=0.0044  Score=59.21  Aligned_cols=89  Identities=16%  Similarity=0.086  Sum_probs=58.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh---cCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~---~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+||||.||.|.+.+.+.+.+-. ..+++||+++.+.+..+.+...   .+... ..++.+|+.++....+...+ ..
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~  113 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD  113 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence            4578999999999999988776422 3478999999999888876543   22111 23567888776332111000 12


Q ss_pred             CCccEEEecCCCCCc
Q 011347          430 GSIDFVICQNSVPQI  444 (488)
Q Consensus       430 g~~DLVIGGpPCQ~F  444 (488)
                      +.||+|+.-||....
T Consensus       114 ~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCEEEEEECCCC---
T ss_pred             CCcCEEEECCCCcCC
Confidence            579999999998755

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.46  E-value=0.005  Score=54.96  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347          348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      |..+.+.+.+|||+-||.|.+...+.+.|..  .++++|+++.+....+.....  .....+...|+.++..        
T Consensus        36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------  103 (215)
T 2pxx_A           36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------  103 (215)
T ss_dssp             HGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------
Confidence            3344466789999999999999999999863  478999999998887765432  1223356678776531        


Q ss_pred             ccCCccEEEecCCC
Q 011347          428 KLGSIDFVICQNSV  441 (488)
Q Consensus       428 ~~g~~DLVIGGpPC  441 (488)
                      ..+.||+|+...+.
T Consensus       104 ~~~~fD~v~~~~~~  117 (215)
T 2pxx_A          104 PSASFDVVLEKGTL  117 (215)
T ss_dssp             CSSCEEEEEEESHH
T ss_pred             CCCcccEEEECcch
Confidence            12579999976654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.46  E-value=0.0052  Score=63.22  Aligned_cols=80  Identities=11%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCee-------------------------------------eeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~-------------------------------------k~vvsVEid~~a~~t~  395 (488)
                      ..+.+|||+|||.|++.+.+-..+.++                                     ..|+++|+|+.+.+..
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            346789999999999876554433221                                     1378999999999998


Q ss_pred             HHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347          396 KRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       396 ~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      +.+....+... ..+..+|+.++...         +.+|+|+.-||-
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~---------~~fD~Iv~NPPY  317 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTE---------DEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCC---------CCCCEEEECCCC
Confidence            88765543322 33566888776531         479999999883

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=96.42  E-value=0.0068  Score=57.56  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+...|.+.|.+   |+++|+++.+....+......+. ...+..+|+.++..         .+.+|
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD  186 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD  186 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence            4678999999999999999999974   68999999998888776543322 23355678776543         25789


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+...+..
T Consensus       187 ~i~~~~~~~  195 (286)
T 3m70_A          187 FIVSTVVFM  195 (286)
T ss_dssp             EEEECSSGG
T ss_pred             EEEEccchh
Confidence            998766544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.40  E-value=0.0038  Score=63.92  Aligned_cols=79  Identities=15%  Similarity=0.261  Sum_probs=55.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCee-------------------------------------eeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~-------------------------------------k~vvsVEid~~a~~t~  395 (488)
                      ..+.+|||+|||.|++.+.+-..|.++                                     ..|+++|+|+.+.+..
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            356789999999999877665443211                                     2378999999999988


Q ss_pred             HHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347          396 KRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  440 (488)
Q Consensus       396 ~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP  440 (488)
                      +.+....+... ..+..+|+.++...         +.+|+|+.-||
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~~---------~~~D~Iv~NPP  310 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKSE---------DEFGFIITNPP  310 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCCS---------CBSCEEEECCC
T ss_pred             HHHHHHcCCCCceEEEECChhhcCcC---------CCCcEEEECCC
Confidence            87765443221 22456777766431         46999999988

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.39  E-value=0.0072  Score=52.38  Aligned_cols=75  Identities=11%  Similarity=0.032  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++.+.+..+.+....+.....+..+|+.+    .++     .+.+|
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D  102 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN  102 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence            457899999999999999888443   478999999998888776544322222344566653    111     15799


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+..+|
T Consensus       103 ~i~~~~~  109 (183)
T 2yxd_A          103 KAFIGGT  109 (183)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9998887

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.37  E-value=0.0026  Score=56.66  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+.||.|.+...+.+.|    .|+++|+++.+.+.       .  ....+..+|+.+.-.+         +.||
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~~---------~~fD   80 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSINQ---------ESVD   80 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBCG---------GGCS
T ss_pred             CCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhccc---------CCCC
Confidence            34589999999999999999988    37899999997654       1  1233567888652211         4699


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+..+|-...+
T Consensus        81 ~i~~n~~~~~~~   92 (170)
T 3q87_B           81 VVVFNPPYVPDT   92 (170)
T ss_dssp             EEEECCCCBTTC
T ss_pred             EEEECCCCccCC
Confidence            999988765443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.33  E-value=0.0044  Score=61.67  Aligned_cols=98  Identities=15%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347          330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  407 (488)
Q Consensus       330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~  407 (488)
                      |.+|-.|-+|  .+..++..+..  ..+-+|||+-||.|.++..|.+.|-   -|++||+|+.....++.....  ....
T Consensus        26 k~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v   98 (295)
T 3gru_A           26 KKLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNI   98 (295)
T ss_dssp             ----CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSE
T ss_pred             cccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCe
Confidence            3446555333  34444444432  2457899999999999999988874   378999999999888876542  2233


Q ss_pred             cceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347          408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      .++.+|+.+++-..        ..+|+|++..|-+
T Consensus        99 ~vi~gD~l~~~~~~--------~~fD~Iv~NlPy~  125 (295)
T 3gru_A           99 EIIWGDALKVDLNK--------LDFNKVVANLPYQ  125 (295)
T ss_dssp             EEEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred             EEEECchhhCCccc--------CCccEEEEeCccc
Confidence            46779998876332        2589999888743

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.32  E-value=0.0079  Score=62.40  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.||.+..+..+--.-..|+++|+++...+..+.+....+.....+..+|+.++... +     ..+.||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence            4678999999999999888764111024789999999988888765543332333556777765421 1     014699


Q ss_pred             EEEecCCCCCcccc
Q 011347          434 FVICQNSVPQIPNS  447 (488)
Q Consensus       434 LVIGGpPCQ~FS~a  447 (488)
                      +|+--+||.++...
T Consensus       333 ~Vl~D~Pcsg~g~~  346 (450)
T 2yxl_A          333 KVLLDAPCTSSGTI  346 (450)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEcCCCCCCeee
Confidence            99999999988754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.32  E-value=0.011  Score=54.04  Aligned_cols=96  Identities=18%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCC----eeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceecccc
Q 011347          345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQ  415 (488)
Q Consensus       345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi----~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~  415 (488)
                      +..|......+.+|||+-||.|.+...+.+.+-    +-..|+++|+++...+..+.+....+     .....+..+|+.
T Consensus        71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  150 (227)
T 2pbf_A           71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY  150 (227)
T ss_dssp             HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred             HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence            444443344568999999999999988887642    11247899999998888777654332     122335567776


Q ss_pred             ccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347          416 ALTTKKFESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       416 ~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                      +...+...    ..+.||+|+...++..+
T Consensus       151 ~~~~~~~~----~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          151 QVNEEEKK----ELGLFDAIHVGASASEL  175 (227)
T ss_dssp             GCCHHHHH----HHCCEEEEEECSBBSSC
T ss_pred             hcccccCc----cCCCcCEEEECCchHHH
Confidence            64311111    12579999988877644

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.31  E-value=0.0077  Score=59.13  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+ +|||+-||.|.++..|.+.|-   -|+++|+|+.....++.....   ....++.+|+.+++-.++       ..+|
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-------~~~~  112 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-------PQGS  112 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-------CTTE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-------cCcc
Confidence            45 999999999999999999984   378999999999888875431   223467799988875432       2579


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+|-.|=+
T Consensus       113 ~iv~NlPy~  121 (271)
T 3fut_A          113 LLVANLPYH  121 (271)
T ss_dssp             EEEEEECSS
T ss_pred             EEEecCccc
Confidence            999988743

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.28  E-value=0.0056  Score=56.04  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHH
Q 011347          344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE  423 (488)
Q Consensus       344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie  423 (488)
                      .+..+..+.+.+.+|||+-||.|.+...|.+.|.+   ++++|+++.+....+...   ...+..++.+|+.++...   
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~---  113 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE---  113 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC---
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC---
Confidence            34445555667889999999999999999999874   678999999887776421   122333566777766421   


Q ss_pred             HhhhccCCccEEEecC
Q 011347          424 SLIHKLGSIDFVICQN  439 (488)
Q Consensus       424 ~l~~~~g~~DLVIGGp  439 (488)
                           .+.||+|+...
T Consensus       114 -----~~~fD~v~~~~  124 (242)
T 3l8d_A          114 -----NEQFEAIMAIN  124 (242)
T ss_dssp             -----TTCEEEEEEES
T ss_pred             -----CCCccEEEEcC
Confidence                 24688888543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.27  E-value=0.0043  Score=55.41  Aligned_cols=82  Identities=12%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhcc
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+.+|||+.||.|.+...+.+. |-. ..++++|+++.+.+..+.+....+. ....++.+|+.++..     .  ..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~   91 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID   91 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence            345679999999999999887765 211 1478999999998888776544321 122345677765532     1  12


Q ss_pred             CCccEEEecCCC
Q 011347          430 GSIDFVICQNSV  441 (488)
Q Consensus       430 g~~DLVIGGpPC  441 (488)
                      +.||+|+..+|-
T Consensus        92 ~~fD~v~~~~~~  103 (197)
T 3eey_A           92 CPVKAVMFNLGY  103 (197)
T ss_dssp             SCEEEEEEEESB
T ss_pred             CCceEEEEcCCc
Confidence            579999988766

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.26  E-value=0.012  Score=53.01  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.++..+.+.|=. ..++++|+++.+.+..+.+....+.....+..+|+.+.-.        ..+.+|
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence            5678999999999999999888721 2478999999998888876544332222345566643321        225799


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+.+.+..
T Consensus       111 ~i~~~~~~~  119 (204)
T 3e05_A          111 RVFIGGSGG  119 (204)
T ss_dssp             EEEESCCTT
T ss_pred             EEEECCCCc
Confidence            999877654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.25  E-value=0.0073  Score=62.05  Aligned_cols=80  Identities=10%  Similarity=0.086  Sum_probs=56.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCee-------------------------------------eeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~-------------------------------------k~vvsVEid~~a~~t~  395 (488)
                      ..+.+++|.|||.|++.+..-..+.++                                     ..++++|+|+.+.+..
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            346789999999999876554433221                                     1378999999999998


Q ss_pred             HHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347          396 KRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       396 ~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      +.+....+..+ ..+..+|+.++...         +.+|+|+.-||-
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY  310 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY  310 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred             HHHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence            88776543322 23566788776531         479999998884

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.23  E-value=0.0053  Score=58.45  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=53.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+-||.|.+...+.++|.   .|+++|+|+.+....+.+....+.. ..+..+|+.+.    +     ..+.+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f  185 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF  185 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence            4567999999999999999999996   4789999999998888765433221 22344555431    1     12579


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+...+
T Consensus       186 D~Vv~n~~  193 (254)
T 2nxc_A          186 DLLVANLY  193 (254)
T ss_dssp             EEEEEECC
T ss_pred             CEEEECCc
Confidence            99997543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.21  E-value=0.0044  Score=60.12  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347          330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  407 (488)
Q Consensus       330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~  407 (488)
                      |.+|-.|-+|  .+..++..+.  ...+-+|||+-||.|.++..|.+.|-   -|+++|+|+.....++.....  ....
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v   77 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI   77 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred             CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence            3456656433  3333343332  12467899999999999999998883   478999999999988876532  2233


Q ss_pred             cceeccccccChhhHHHhhhccCCccEEEecCC
Q 011347          408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  440 (488)
Q Consensus       408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpP  440 (488)
                      .++.+|+.+++-.++.    ..+++| |+|-+|
T Consensus        78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred             EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence            4677999888743321    013577 777776

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.21  E-value=0.0078  Score=52.53  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=55.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+.+|||+-||.|.+...+.+.|.+   ++++|+++.+....+....     ...+...|+.++..        ..+.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~  107 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD  107 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence            456789999999999999999999864   6889999998877765331     23356677776531        1257


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      +|+|+..+++-.
T Consensus       108 ~D~i~~~~~~~~  119 (195)
T 3cgg_A          108 FDLIVSAGNVMG  119 (195)
T ss_dssp             EEEEEECCCCGG
T ss_pred             eeEEEECCcHHh
Confidence            999997655543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=96.19  E-value=0.013  Score=51.64  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...+.+.|.+   ++++|+++.+.+..+......+.....+...|+.++..         .+.+|
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D   99 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYD   99 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCce
Confidence            3459999999999999999988864   68899999988887776543322233355677776542         25789


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+....
T Consensus       100 ~v~~~~~  106 (199)
T 2xvm_A          100 FILSTVV  106 (199)
T ss_dssp             EEEEESC
T ss_pred             EEEEcch
Confidence            9886654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=96.18  E-value=0.011  Score=54.02  Aligned_cols=82  Identities=20%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+||||.||.|.+...+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+     ..+.+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence            4678999999999999988776311 2478999999998888776544332233456788876431 01     125799


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+..+|..
T Consensus       114 ~i~~~~~~~  122 (214)
T 1yzh_A          114 RLYLNFSDP  122 (214)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            999887754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.17  E-value=0.0086  Score=61.58  Aligned_cols=86  Identities=12%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.||.+..+..++-. -.|+++|+++...+..+.+....+. ...+..+|..++... +     ..+.||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence            4678999999999999998876532 2478999999988888876554332 223556777665321 1     124799


Q ss_pred             EEEecCCCCCcccc
Q 011347          434 FVICQNSVPQIPNS  447 (488)
Q Consensus       434 LVIGGpPCQ~FS~a  447 (488)
                      +|+.-+||.++...
T Consensus       318 ~Vl~D~Pcsg~g~~  331 (429)
T 1sqg_A          318 RILLDAPCSATGVI  331 (429)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeCCCCccccc
Confidence            99999999988754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.16  E-value=0.011  Score=54.11  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccC
Q 011347          345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALT  418 (488)
Q Consensus       345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~  418 (488)
                      +..|......+.+|||+-||.|+++..+.+. |-.. .|+++|+++...+..+.+....+     .....+...|+....
T Consensus        68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTG-KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence            3444433456789999999999999888765 4221 47899999998887776554321     112224556765432


Q ss_pred             hhhHHHhhhccCCccEEEecCCCCCc
Q 011347          419 TKKFESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       419 ~~~Ie~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                      .        ..+.||+|+...||..+
T Consensus       147 ~--------~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          147 A--------EEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             G--------GGCCEEEEEECSBBSSC
T ss_pred             c--------cCCCcCEEEECCchHHH
Confidence            1        12579999999998765

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.16  E-value=0.014  Score=53.69  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|.+++.+.+.|.+   |+++|+++.+.+..+.+....+.. ...++.+|+.+.-        ...+.+
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~~~---v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~  123 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAGGR---AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP  123 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence            4678999999999999988888653   789999999988888765443323 2335567776521        122579


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+-+.
T Consensus       124 D~v~~~~  130 (204)
T 3njr_A          124 EAVFIGG  130 (204)
T ss_dssp             SEEEECS
T ss_pred             CEEEECC
Confidence            9998544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.14  E-value=0.0026  Score=63.79  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             HhhhhhcccCcchhhh-ccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 011347          330 ESLRHCFQTDTLGYHL-SVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE  407 (488)
Q Consensus       330 k~Lgnsfqvdti~~~l-svLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~  407 (488)
                      +.+|..|..+.+...+ ..+..  +.+.+|||+.||.|++.+.+.+. +-. ..++++|+++.+.+..         ...
T Consensus        16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~   83 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA   83 (421)
T ss_dssp             -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred             ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence            4556666555544432 22322  34569999999999999988753 211 3478999999874322         122


Q ss_pred             cceeccccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 011347          408 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  446 (488)
Q Consensus       408 lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  446 (488)
                      .++.+|+.+...         .+.+|+|++-||.-....
T Consensus        84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE  113 (421)
T ss_dssp             EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred             cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence            356678765532         157999999999976653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.09  E-value=0.0097  Score=53.79  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCcceeccccccChhh
Q 011347          347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKK  421 (488)
Q Consensus       347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-----g~lv~~~DI~~L~~~~  421 (488)
                      .+..+.+.+.+|||+-||.|.+...+.+.|.+   ++++|+++.+.+..+......+..     ...+...|+.++..  
T Consensus        23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--   97 (235)
T 3sm3_A           23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF--   97 (235)
T ss_dssp             THHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--
T ss_pred             HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--
Confidence            34445567889999999999999999999864   688999999888887654322111     11244566665531  


Q ss_pred             HHHhhhccCCccEEEecCCCC
Q 011347          422 FESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                            ..+.+|+|+......
T Consensus        98 ------~~~~~D~v~~~~~l~  112 (235)
T 3sm3_A           98 ------HDSSFDFAVMQAFLT  112 (235)
T ss_dssp             ------CTTCEEEEEEESCGG
T ss_pred             ------CCCceeEEEEcchhh
Confidence                  125799999765433

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.07  E-value=0.016  Score=52.24  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+...      +..+...|+.++..         .+.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence            445789999999999999999999874   678999999887776543      12245677776651         257


Q ss_pred             ccEEEecC
Q 011347          432 IDFVICQN  439 (488)
Q Consensus       432 ~DLVIGGp  439 (488)
                      ||+|+...
T Consensus       103 fD~v~~~~  110 (211)
T 3e23_A          103 YDAVWAHA  110 (211)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            88888654

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.99  E-value=0.0054  Score=45.84  Aligned_cols=37  Identities=14%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG   40 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~   40 (488)
                      +++.+|++|||++++|..|+..++-+  ++.-++.++.+
T Consensus        10 ~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g   46 (49)
T 1ify_A           10 TMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            46789999999999999999999975  66667887764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.99  E-value=0.0074  Score=56.48  Aligned_cols=77  Identities=18%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      ..|....+.+.+|||+-||.|.+...|.+.|.+   |+++|+++......+....     ...++.+|+.++..      
T Consensus        42 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------  107 (263)
T 3pfg_A           42 ALVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL------  107 (263)
T ss_dssp             HHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC------
T ss_pred             HHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc------
Confidence            334445567789999999999999999999864   6889999998877765321     23356688876543      


Q ss_pred             hhccCCccEEEecC
Q 011347          426 IHKLGSIDFVICQN  439 (488)
Q Consensus       426 ~~~~g~~DLVIGGp  439 (488)
                         .+.||+|+...
T Consensus       108 ---~~~fD~v~~~~  118 (263)
T 3pfg_A          108 ---GRRFSAVTCMF  118 (263)
T ss_dssp             ---SCCEEEEEECT
T ss_pred             ---cCCcCEEEEcC
Confidence               14788888643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.95  E-value=0.012  Score=52.55  Aligned_cols=73  Identities=16%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+ +|||+-||.|.+...|.+.|.+   ++++|+++.+....+......+. ...+...|+.++..        ..+.+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f   95 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW   95 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence            445 9999999999999999999874   68899999988877765543221 22345577766531        12468


Q ss_pred             cEEEec
Q 011347          433 DFVICQ  438 (488)
Q Consensus       433 DLVIGG  438 (488)
                      |+|+..
T Consensus        96 D~v~~~  101 (202)
T 2kw5_A           96 EGIVSI  101 (202)
T ss_dssp             SEEEEE
T ss_pred             cEEEEE
Confidence            999864

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.92  E-value=0.017  Score=53.81  Aligned_cols=79  Identities=20%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+.||.|++...+.+. |=. ..++++|+++...+..+.+....+..+ ..+..+|+.+.-.         .+.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~  162 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---------EEN  162 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---------CCS
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---------CCC
Confidence            5678999999999999999887 311 247899999998888877654433222 2345677764311         146


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|+..+|+.
T Consensus       163 ~D~v~~~~~~~  173 (255)
T 3mb5_A          163 VDHVILDLPQP  173 (255)
T ss_dssp             EEEEEECSSCG
T ss_pred             cCEEEECCCCH
Confidence            99999877765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=95.91  E-value=0.017  Score=52.62  Aligned_cols=74  Identities=16%  Similarity=0.129  Sum_probs=53.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+......+. ...+...|+.++..        . +.+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~-~~f  102 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------N-RKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------S-CCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--------c-CCc
Confidence            46679999999999999999999864   68899999988877765543221 23345677766542        1 579


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+...
T Consensus       103 D~v~~~~  109 (246)
T 1y8c_A          103 DLITCCL  109 (246)
T ss_dssp             EEEEECT
T ss_pred             eEEEEcC
Confidence            9998643

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.89  E-value=0.019  Score=52.44  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=57.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+-||.|.+...+...|.   .++++|+++......+......+  ...+..+|+.+.-.        ..+.+
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~f  135 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPY  135 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCc
Confidence            3567899999999999999998883   47899999999888876553221  22345677765211        12579


Q ss_pred             cEEEecCCCCCcc
Q 011347          433 DFVICQNSVPQIP  445 (488)
Q Consensus       433 DLVIGGpPCQ~FS  445 (488)
                      |+|+...++..+.
T Consensus       136 D~v~~~~~~~~~~  148 (231)
T 1vbf_A          136 DRVVVWATAPTLL  148 (231)
T ss_dssp             EEEEESSBBSSCC
T ss_pred             cEEEECCcHHHHH
Confidence            9999887776553

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=95.85  E-value=0.0084  Score=43.23  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS   39 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a   39 (488)
                      +++.+|++|||+++++..|+..|+-  .++.-++.++.
T Consensus         6 ~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~A~~~L~~   41 (43)
T 2g3q_A            6 LAVEELSGMGFTEEEAHNALEKCNW--DLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTS--CHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCc--CHHHHHHHHHc
Confidence            4678999999999999999999976  46666666654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.81  E-value=0.016  Score=50.31  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+.+..+.+....+. ....+..+|+.+        .....+.+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~  101 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI  101 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence            56789999999999999998888   3478999999998888776543322 122233455432        11122579


Q ss_pred             cEEEecCCCCC
Q 011347          433 DFVICQNSVPQ  443 (488)
Q Consensus       433 DLVIGGpPCQ~  443 (488)
                      |+|+...+...
T Consensus       102 D~v~~~~~~~~  112 (192)
T 1l3i_A          102 DIAVVGGSGGE  112 (192)
T ss_dssp             EEEEESCCTTC
T ss_pred             CEEEECCchHH
Confidence            99998776543

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.79  E-value=0.0056  Score=45.10  Aligned_cols=35  Identities=17%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS   39 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a   39 (488)
                      +++.+|++|||+++++..|+..+|   .++.-++.|+.
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~~~---n~e~A~~~L~~   45 (47)
T 2ekk_A           11 QQLQQLMDMGFTREHAMEALLNTS---TMEQATEYLLT   45 (47)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHSC---SHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcC---CHHHHHHHHHc
Confidence            456899999999999999999997   57777887764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=95.79  E-value=0.018  Score=58.02  Aligned_cols=81  Identities=12%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc-cChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~-L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+. |.|.+++.+.+.|.. ..|+++|+++.+.+..+.+....+.....++.+|+.+ +...       ..+.|
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~f  242 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKF  242 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCB
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCc
Confidence            457899999 999999999888752 2478999999998888876654332223356788876 4321       01479


Q ss_pred             cEEEecCCCCC
Q 011347          433 DFVICQNSVPQ  443 (488)
Q Consensus       433 DLVIGGpPCQ~  443 (488)
                      |+|+-.+||..
T Consensus       243 D~Vi~~~p~~~  253 (373)
T 2qm3_A          243 DTFITDPPETL  253 (373)
T ss_dssp             SEEEECCCSSH
T ss_pred             cEEEECCCCch
Confidence            99999999853

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.77  E-value=0.023  Score=52.48  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+......+. ...+..+|+.++..         .+.+|
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---------~~~fD  107 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---------KNEFD  107 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---------CSCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---------CCCcc
Confidence            4578999999999999999999874   68899999988887765543221 23355677766532         13577


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+.
T Consensus       108 ~v~~  111 (252)
T 1wzn_A          108 AVTM  111 (252)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7763

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.77  E-value=0.015  Score=55.25  Aligned_cols=75  Identities=16%  Similarity=0.011  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+.||.|.++..|.+.|.   -|+++|+|+.....++.....  .....++.+|+.++.-..       ...+ 
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~-   96 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY-   96 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC-
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe-
Confidence            567899999999999999998883   478999999998888765432  123336678887765311       1234 


Q ss_pred             EEEecCCC
Q 011347          434 FVICQNSV  441 (488)
Q Consensus       434 LVIGGpPC  441 (488)
                      .|++.+|=
T Consensus        97 ~vv~nlPy  104 (244)
T 1qam_A           97 KIFGNIPY  104 (244)
T ss_dssp             EEEEECCG
T ss_pred             EEEEeCCc
Confidence            56777764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=95.71  E-value=0.015  Score=54.03  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.|..  .++++|+++.+.+..+....   .....+..+|+.++..        ..+.||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence            5689999999999999999999863  47899999998877765432   1223356678776542        125788


Q ss_pred             EEEecC
Q 011347          434 FVICQN  439 (488)
Q Consensus       434 LVIGGp  439 (488)
                      +|+...
T Consensus       111 ~v~~~~  116 (253)
T 3g5l_A          111 VVLSSL  116 (253)
T ss_dssp             EEEEES
T ss_pred             EEEEch
Confidence            888754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=95.71  E-value=0.0057  Score=57.31  Aligned_cols=45  Identities=20%  Similarity=0.216  Sum_probs=35.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      .+.+|||++||.|.+.+.+.+.  + .-..|+++|+|+.+.+..+.+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~   97 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHH
Confidence            4578999999999999988765  2 1234789999999988777543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.69  E-value=0.017  Score=52.92  Aligned_cols=77  Identities=21%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhh--c
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH--K  428 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~--~  428 (488)
                      ++.+.+||||-||.||++..+.+.+-   .|++||+++.+           ...+..++.+|+++... +.+.....  .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            35678999999999999999887753   37899999852           12244467899988653 22322221  0


Q ss_pred             cCCccEEEecCCCC
Q 011347          429 LGSIDFVICQNSVP  442 (488)
Q Consensus       429 ~g~~DLVIGGpPCQ  442 (488)
                      .+.||+|+.-.+++
T Consensus        89 ~~~~D~Vlsd~~~~  102 (191)
T 3dou_A           89 IEKVDDVVSDAMAK  102 (191)
T ss_dssp             CSSEEEEEECCCCC
T ss_pred             CCcceEEecCCCcC
Confidence            14899999876654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.68  E-value=0.019  Score=51.33  Aligned_cols=81  Identities=20%  Similarity=0.069  Sum_probs=54.2

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh
Q 011347          341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  420 (488)
Q Consensus       341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~  420 (488)
                      +...+..+.. .+.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+.    .+.....+..+|+.++.  
T Consensus        34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~--  103 (218)
T 3ou2_A           34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT--  103 (218)
T ss_dssp             HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--
T ss_pred             HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--
Confidence            3334444443 334569999999999999999988864   6789999998777654    11123335567776651  


Q ss_pred             hHHHhhhccCCccEEEec
Q 011347          421 KFESLIHKLGSIDFVICQ  438 (488)
Q Consensus       421 ~Ie~l~~~~g~~DLVIGG  438 (488)
                             ..+.+|+|+..
T Consensus       104 -------~~~~~D~v~~~  114 (218)
T 3ou2_A          104 -------PDRQWDAVFFA  114 (218)
T ss_dssp             -------CSSCEEEEEEE
T ss_pred             -------CCCceeEEEEe
Confidence                   12467887754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=95.67  E-value=0.016  Score=58.98  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=53.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC---CcceeccccccChhhHHHhhhccCC
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g---~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+||||+||.|.+++.+.+.+-. ..|+++|+++.+.+..+.+....+...   ..+..+|+.+.-         ..+.
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~  292 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR  292 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence            378999999999999999888411 237899999999888887664332110   112456665411         1257


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      ||+|+..||..
T Consensus       293 fD~Ii~nppfh  303 (375)
T 4dcm_A          293 FNAVLCNPPFH  303 (375)
T ss_dssp             EEEEEECCCC-
T ss_pred             eeEEEECCCcc
Confidence            99999999864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=95.66  E-value=0.032  Score=55.52  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||++||.||.+..+-+.+=. ..|+++|+|+.+.+..+.+....+ ....++.+|..++.. .+..+  ..+.||
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D  100 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD  100 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence            4568999999999999988765201 237899999999988877554322 223356677765531 11110  124799


Q ss_pred             EEEecCCCCC
Q 011347          434 FVICQNSVPQ  443 (488)
Q Consensus       434 LVIGGpPCQ~  443 (488)
                      .|+--+||..
T Consensus       101 ~Vl~D~gvSs  110 (301)
T 1m6y_A          101 GILMDLGVST  110 (301)
T ss_dssp             EEEEECSCCH
T ss_pred             EEEEcCccch
Confidence            9999888853

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.60  E-value=0.031  Score=51.50  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=58.7

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .....+.+|||+-||.|.+...|.+.|.   .|+++|+++.+....+...   ......++.+|+.++....-   ....
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~---~~~~  122 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQ---IHSE  122 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHH---HHHH
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccc---cccc
Confidence            3345678999999999999999999886   3689999999888776643   12233456788877643211   1011


Q ss_pred             CCccEEEecCCCCCc
Q 011347          430 GSIDFVICQNSVPQI  444 (488)
Q Consensus       430 g~~DLVIGGpPCQ~F  444 (488)
                      ..+|+|+...-..-+
T Consensus       123 ~~~d~v~~~~~~~~~  137 (245)
T 3ggd_A          123 IGDANIYMRTGFHHI  137 (245)
T ss_dssp             HCSCEEEEESSSTTS
T ss_pred             cCccEEEEcchhhcC
Confidence            258999977655443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.59  E-value=0.027  Score=52.87  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      .+.+.+|||+-||.|.+...+.+.+.  ..|+++|+++......+......+..+ ..+..+|+.++...        .+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~  113 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR--------NE  113 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--------TT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC--------CC
Confidence            34678999999999999999988853  247899999998887776554332222 33567888766411        25


Q ss_pred             CccEEEecCCCCCc
Q 011347          431 SIDFVICQNSVPQI  444 (488)
Q Consensus       431 ~~DLVIGGpPCQ~F  444 (488)
                      .||+|+.......+
T Consensus       114 ~fD~i~~~~~~~~~  127 (267)
T 3kkz_A          114 ELDLIWSEGAIYNI  127 (267)
T ss_dssp             CEEEEEESSCGGGT
T ss_pred             CEEEEEEcCCceec
Confidence            79999977655433

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=95.59  E-value=0.023  Score=50.91  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+|||+.||.|.+...+...  +.   .++++|+++.+.+..+.+....+.....+..+|+.++..         .+.+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  133 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF  133 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence            568999999999999888775  43   378999999998888776544332223355677765542         1479


Q ss_pred             cEEEe
Q 011347          433 DFVIC  437 (488)
Q Consensus       433 DLVIG  437 (488)
                      |+|+.
T Consensus       134 D~i~~  138 (207)
T 1jsx_A          134 DGVIS  138 (207)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            99984

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.57  E-value=0.013  Score=47.58  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=33.7

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI   42 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~   42 (488)
                      +++..|++|||++++|..|+.+|+-+  ++.-++.++..+.
T Consensus        31 e~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~~   69 (73)
T 1vg5_A           31 EQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence            46789999999999999999999975  7777899987663

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.55  E-value=0.026  Score=55.36  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|++...+.+.+-+-..|+++|+++...+..+......+.....+..+|+.+...        ..+.+|
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence            567999999999999988887654212378999999988887776544322233355677765432        125799


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+...++..+.
T Consensus       147 ~Iv~~~~~~~~~  158 (317)
T 1dl5_A          147 VIFVTVGVDEVP  158 (317)
T ss_dssp             EEEECSBBSCCC
T ss_pred             EEEEcCCHHHHH
Confidence            999888876553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=95.52  E-value=0.015  Score=65.86  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             hhhhcccCcchhhhccc-----cccCCCCCcccccCCCCChhHHHHHHc-C-CeeeeEEEeeCCHHHHHHH--HHHhhh-
Q 011347          332 LRHCFQTDTLGYHLSVL-----KSMFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWES-  401 (488)
Q Consensus       332 Lgnsfqvdti~~~lsvL-----K~~fp~~itVLDLFSGiGGlslGL~~a-G-i~~k~vvsVEid~~a~~t~--~~~~~~-  401 (488)
                      .|..+....++..+.-+     .+..+.+.+|+|.+||.|++.+++.+. + ..-..++++|||+.+.+..  +.+... 
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            34445444444443222     333456789999999999999887653 2 2123478999999988776  432211 


Q ss_pred             ---cCCCCCcceeccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347          402 ---SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       402 ---~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                         +......+..+|....+..       ..+.||+|+|=||=-
T Consensus       374 ~LlhGi~~~~I~~dD~L~~~~~-------~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          374 QLVSSNNAPTITGEDVCSLNPE-------DFANVSVVVMNPPYV  410 (878)
T ss_dssp             TTCBTTBCCEEECCCGGGCCGG-------GGTTEEEEEECCBCC
T ss_pred             hhhcCCCcceEEecchhccccc-------ccCCCCEEEECCCcc
Confidence               0000112233444332211       236899999999973

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=95.52  E-value=0.022  Score=51.37  Aligned_cols=79  Identities=18%  Similarity=0.112  Sum_probs=55.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+-||.|.+...+.+.+-+-..++++|+++...+..+......+.....+..+|+.++..        ..+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f  107 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV  107 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence            4567999999999999999988761112478999999988888776544332333356678776541        12468


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+...
T Consensus       108 D~v~~~~  114 (219)
T 3dh0_A          108 DFIFMAF  114 (219)
T ss_dssp             EEEEEES
T ss_pred             eEEEeeh
Confidence            9998654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=95.51  E-value=0.019  Score=54.45  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      -+.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+......+. ....++.+|+.++...       ..+
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~  135 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-------LET  135 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-------CSS
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-------cCC
Confidence            345789999999999999999999874   67899999988877765433221 1222456777665420       125


Q ss_pred             CccEEEecCC
Q 011347          431 SIDFVICQNS  440 (488)
Q Consensus       431 ~~DLVIGGpP  440 (488)
                      .||+|+....
T Consensus       136 ~fD~v~~~~~  145 (285)
T 4htf_A          136 PVDLILFHAV  145 (285)
T ss_dssp             CEEEEEEESC
T ss_pred             CceEEEECch
Confidence            7999997543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=95.50  E-value=0.045  Score=50.47  Aligned_cols=80  Identities=19%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+-||.|.+...+.+.  +.   .++++|+++.+....+.+....+.....++.+|+.++.     ..+ ..+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~  108 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGE  108 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTS
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCC
Confidence            4578999999999999998776  43   47899999999887776554333223345667877632     111 1256


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|.|+-.+|+.
T Consensus       109 ~d~v~~~~~~p  119 (213)
T 2fca_A          109 VKRVYLNFSDP  119 (213)
T ss_dssp             CCEEEEESCCC
T ss_pred             cCEEEEECCCC
Confidence            89888776654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=95.49  E-value=0.027  Score=53.60  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+.||.|.+++.+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.+.-         ..+.
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  181 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD  181 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence            4678999999999999988876 421 2478999999998888776543321 11223456665431         1146


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|+-.+|+.
T Consensus       182 ~D~V~~~~~~~  192 (277)
T 1o54_A          182 VDALFLDVPDP  192 (277)
T ss_dssp             EEEEEECCSCG
T ss_pred             cCEEEECCcCH
Confidence            99999887765

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.47  E-value=0.012  Score=46.41  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=34.8

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccccC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL   44 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~~~   44 (488)
                      +++.+|++|||++++|..|+..|+-  .++.-++.|+..+...
T Consensus        11 ~~I~~L~~MGF~~~~a~~AL~~~~~--nve~A~e~L~~~~~~~   51 (63)
T 1wji_A           11 KALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSNKQK   51 (63)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCCCCc
Confidence            4568999999999999999999987  4888899999876433

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.47  E-value=0.011  Score=46.30  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||+++++..|+..++.+  ++.-++.|+...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~   48 (63)
T 2dak_A           11 DCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI   48 (63)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            46789999999999999999999874  888889998865

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.43  E-value=0.032  Score=57.61  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcC------------CeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccCh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  419 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aG------------i~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~  419 (488)
                      .+.+|+|..||.||+.+.+.+.-            +....++++|+++.+.++.+.+..-++..  ...+..+|.-....
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            46789999999999988775420            01124789999999888777654333221  22355566543321


Q ss_pred             hhHHHhhhccCCccEEEecCCCCCcc
Q 011347          420 KKFESLIHKLGSIDFVICQNSVPQIP  445 (488)
Q Consensus       420 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS  445 (488)
                               .+.||+|++-||.....
T Consensus       251 ---------~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          251 ---------STLVDVILANPPFGTRP  267 (445)
T ss_dssp             ---------SSCEEEEEECCCSSCCC
T ss_pred             ---------cCCcCEEEECCCCCCcc
Confidence                     24799999999987654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.40  E-value=0.034  Score=53.04  Aligned_cols=76  Identities=17%  Similarity=0.081  Sum_probs=52.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhc-CCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~-n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      ..+.+|||+.||.|++...+.+.   +.   .++++|+++.+.+..+.+.... +.....+..+|+.+.-.         
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---------  176 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---------  176 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---------
Confidence            35678999999999999988876   44   3689999999988887765432 21222345567654211         


Q ss_pred             cCCccEEEecCC
Q 011347          429 LGSIDFVICQNS  440 (488)
Q Consensus       429 ~g~~DLVIGGpP  440 (488)
                      .+.||+|+...|
T Consensus       177 ~~~fD~Vi~~~~  188 (275)
T 1yb2_A          177 DQMYDAVIADIP  188 (275)
T ss_dssp             SCCEEEEEECCS
T ss_pred             CCCccEEEEcCc
Confidence            146999998554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=95.40  E-value=0.02  Score=55.35  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc-------CCCCCcceeccc
Q 011347          342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIEDI  414 (488)
Q Consensus       342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~-------n~~g~lv~~~DI  414 (488)
                      ...+..+....+.+.+|||+-||.|++...+.+.+.  ..++++|+++...+..+......       +.....++.+|+
T Consensus        22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~   99 (313)
T 3bgv_A           22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence            334444444445678999999999999998887653  34789999999887776654321       111223566787


Q ss_pred             cccChhhHHHhhhccCCccEEEecC
Q 011347          415 QALTTKKFESLIHKLGSIDFVICQN  439 (488)
Q Consensus       415 ~~L~~~~Ie~l~~~~g~~DLVIGGp  439 (488)
                      .++....  .+....+.||+|+...
T Consensus       100 ~~~~~~~--~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A          100 SKELLID--KFRDPQMCFDICSCQF  122 (313)
T ss_dssp             TTSCSTT--TCSSTTCCEEEEEEET
T ss_pred             cccchhh--hcccCCCCEEEEEEec
Confidence            7654100  0000124688888654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.40  E-value=0.047  Score=50.45  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+.+|||+-||.|.+...+.+.+-.  .|+++|+++......+......+... ..++.+|+.++...        .+.
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~  114 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ--------NEE  114 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC--------TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC--------CCC
Confidence            45679999999999999999888632  47899999998888777654433222 33566888766421        257


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      ||+|+......
T Consensus       115 fD~v~~~~~l~  125 (257)
T 3f4k_A          115 LDLIWSEGAIY  125 (257)
T ss_dssp             EEEEEEESCSC
T ss_pred             EEEEEecChHh
Confidence            99998765444

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=95.39  E-value=0.023  Score=52.22  Aligned_cols=75  Identities=16%  Similarity=0.011  Sum_probs=52.5

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCccE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      .+|||+-||.|.+...|.+.|..   |+++|+++.+.+..+......+. ....+..+|+.++..+         +.||+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~  135 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL  135 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence            49999999999999999887753   78999999988887765432111 1122556777765432         36898


Q ss_pred             EEecCCCC
Q 011347          435 VICQNSVP  442 (488)
Q Consensus       435 VIGGpPCQ  442 (488)
                      |+......
T Consensus       136 v~~~~~l~  143 (235)
T 3lcc_A          136 IFDYVFFC  143 (235)
T ss_dssp             EEEESSTT
T ss_pred             EEEChhhh
Confidence            88655443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.38  E-value=0.04  Score=50.61  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++...+..+.+....+. ....+..+|+.+...        ..+.+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~  159 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF  159 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence            467899999999999988887754   478999999988888776543321 122244566655320        11479


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+..+|
T Consensus       160 D~v~~~~~  167 (248)
T 2yvl_A          160 HAAFVDVR  167 (248)
T ss_dssp             SEEEECSS
T ss_pred             cEEEECCc
Confidence            99998665

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.37  E-value=0.017  Score=56.48  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=38.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      .+-+|||+|||.|...+++.++|.+   ++++|+++.+..+.+.....
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence            4568999999999999999999964   68999999998887765543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.36  E-value=0.034  Score=50.74  Aligned_cols=75  Identities=20%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc------------CCCCCcceeccccccChh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK  420 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~------------n~~g~lv~~~DI~~L~~~  420 (488)
                      +.+.+|||+=||.|....-|.+.|++   |++||+++.+.+..+......            ......++.+|+.++...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            46789999999999999999988974   789999999988776532110            012333567899888743


Q ss_pred             hHHHhhhccCCccEEEe
Q 011347          421 KFESLIHKLGSIDFVIC  437 (488)
Q Consensus       421 ~Ie~l~~~~g~~DLVIG  437 (488)
                      +.       +.||+|+.
T Consensus        98 ~~-------~~fD~v~~  107 (203)
T 1pjz_A           98 DI-------GHCAAFYD  107 (203)
T ss_dssp             HH-------HSEEEEEE
T ss_pred             cC-------CCEEEEEE
Confidence            21       36899885

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.35  E-value=0.011  Score=46.88  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      .+-.|+.|||++++|..|+..+|.+  |+.-+|-||+--
T Consensus        22 ~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~   58 (63)
T 1wgn_A           22 CVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            4567999999999999999999985  889999999754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.35  E-value=0.039  Score=50.24  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|+.+..|.++   |.   .++++|+++......+.++...+... ..++.+|+.+.    +..+....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~  130 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK  130 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence            4578999999999999998876   54   37899999999888887775543322 23455676532    22222222


Q ss_pred             -CCccEEEecCCCCCc
Q 011347          430 -GSIDFVICQNSVPQI  444 (488)
Q Consensus       430 -g~~DLVIGGpPCQ~F  444 (488)
                       +.||+|+-..+|..+
T Consensus       131 ~~~fD~v~~d~~~~~~  146 (223)
T 3duw_A          131 YEPFDFIFIDADKQNN  146 (223)
T ss_dssp             CCCCSEEEECSCGGGH
T ss_pred             CCCcCEEEEcCCcHHH
Confidence             579999987776643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=95.30  E-value=0.044  Score=51.42  Aligned_cols=82  Identities=21%  Similarity=0.226  Sum_probs=57.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++..        ..+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence            356789999999999999999887311 2478999999988877765543322233355677776542        1257


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      ||+|+.....+
T Consensus       106 fD~v~~~~~l~  116 (276)
T 3mgg_A          106 FDHIFVCFVLE  116 (276)
T ss_dssp             EEEEEEESCGG
T ss_pred             eeEEEEechhh
Confidence            99999765443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=95.29  E-value=0.036  Score=51.38  Aligned_cols=78  Identities=13%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+-||.|.+...+.+.|.   .++++|+++......+......+.....+..+|+.++..        ..+.|
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f   88 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSF   88 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcE
Confidence            3567899999999999999988874   478999999988877765543322233356677766541        12479


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |+|+.....
T Consensus        89 D~v~~~~~l   97 (239)
T 1xxl_A           89 DIITCRYAA   97 (239)
T ss_dssp             EEEEEESCG
T ss_pred             EEEEECCch
Confidence            999876543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=95.29  E-value=0.045  Score=50.58  Aligned_cols=81  Identities=21%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc-CCCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~-n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+|||+.||.|.++..+.++ |-. ..++++|+++...+..+.+.... +.....+..+|+.+..   +.     .+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~-----~~  165 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---LE-----EA  165 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---CC-----TT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---CC-----CC
Confidence            35678999999999999998877 311 24789999999988887765433 2122234567776552   11     14


Q ss_pred             CccEEEecCCCC
Q 011347          431 SIDFVICQNSVP  442 (488)
Q Consensus       431 ~~DLVIGGpPCQ  442 (488)
                      .+|+|+..+|+.
T Consensus       166 ~~D~v~~~~~~~  177 (258)
T 2pwy_A          166 AYDGVALDLMEP  177 (258)
T ss_dssp             CEEEEEEESSCG
T ss_pred             CcCEEEECCcCH
Confidence            799999876654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=95.29  E-value=0.0081  Score=64.13  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+++|||+=||.|-++..|.++|..   |.+||.++.+..+-+.+-...+.....+..+|+.     ++... ...+.|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~-----~~~~~-~~~~~f  135 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIE-----EVIAA-LEEGEF  135 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHH-----HHHHH-CCTTSC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHH-----HHhhh-ccCCCc
Confidence            35689999999999999999999985   6899999999988776543221111112233333     22110 123579


Q ss_pred             cEEEec
Q 011347          433 DFVICQ  438 (488)
Q Consensus       433 DLVIGG  438 (488)
                      |+|++-
T Consensus       136 D~v~~~  141 (569)
T 4azs_A          136 DLAIGL  141 (569)
T ss_dssp             SEEEEE
T ss_pred             cEEEEC
Confidence            999863

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.28  E-value=0.038  Score=53.53  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=56.9

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChh
Q 011347          343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTK  420 (488)
Q Consensus       343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~  420 (488)
                      ..+..|.. .+.+.+|||+.||.|.+...|.+. |.+   |+++|+++...+..+......+.. ...++.+|+.++.- 
T Consensus       107 ~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  181 (312)
T 3vc1_A          107 FLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF-  181 (312)
T ss_dssp             HHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-
T ss_pred             HHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC-
Confidence            33444432 245679999999999999998876 754   689999999888777655433222 23356688876541 


Q ss_pred             hHHHhhhccCCccEEEec
Q 011347          421 KFESLIHKLGSIDFVICQ  438 (488)
Q Consensus       421 ~Ie~l~~~~g~~DLVIGG  438 (488)
                             ..+.||+|+..
T Consensus       182 -------~~~~fD~V~~~  192 (312)
T 3vc1_A          182 -------DKGAVTASWNN  192 (312)
T ss_dssp             -------CTTCEEEEEEE
T ss_pred             -------CCCCEeEEEEC
Confidence                   11478988853

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=95.27  E-value=0.015  Score=56.24  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCH-------HHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~-------~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l  425 (488)
                      .+.+|||++||.|.+++.|-+.|.+   |+++|+++       .+.+..+.+....+... ..++.+|+.++-    ..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~  155 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL  155 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence            4578999999999999999888853   68999999       66555544321111001 224456654321    111


Q ss_pred             hhccCCccEEEecCCC
Q 011347          426 IHKLGSIDFVICQNSV  441 (488)
Q Consensus       426 ~~~~g~~DLVIGGpPC  441 (488)
                      ....+.||+|+--||=
T Consensus       156 ~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             hccCCCccEEEECCCC
Confidence            1101479999987653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=95.26  E-value=0.03  Score=51.16  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=56.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+-||.|.+...+.+.  |.   -++++|+++......+.......  ...+..+|+.++...         +
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~  108 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E  108 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence            45689999999999999999887  54   36889999998887776543221  233566788766532         4


Q ss_pred             CccEEEecCCCCCc
Q 011347          431 SIDFVICQNSVPQI  444 (488)
Q Consensus       431 ~~DLVIGGpPCQ~F  444 (488)
                      .+|+|+......-+
T Consensus       109 ~fD~v~~~~~l~~~  122 (234)
T 3dtn_A          109 KYDMVVSALSIHHL  122 (234)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CceEEEEeCccccC
Confidence            79999987644433

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=95.25  E-value=0.017  Score=56.50  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC---------CCcceeccccccChhhHHHhh
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT---------GELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~---------g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      .+|||+|||.|..++-|-+.|-+   |++||+++.....++.+.......         ...++.+|..++        +
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~--------L  158 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--------L  158 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH--------S
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH--------H
Confidence            78999999999999988888863   789999998766665543221100         011333444332        1


Q ss_pred             hc-cCCccEEEecCCCC
Q 011347          427 HK-LGSIDFVICQNSVP  442 (488)
Q Consensus       427 ~~-~g~~DLVIGGpPCQ  442 (488)
                      .. ...||+|+--||=.
T Consensus       159 ~~~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          159 TDITPRPQVVYLDPMFP  175 (258)
T ss_dssp             TTCSSCCSEEEECCCCC
T ss_pred             HhCcccCCEEEEcCCCC
Confidence            11 13699999988754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.17  E-value=0.033  Score=49.76  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=51.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+...     ....++.+|+.++..        .-+.||+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~  105 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG  105 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence            678999999999999999999874   678999999887776532     233356678776531        1257999


Q ss_pred             EEecC
Q 011347          435 VICQN  439 (488)
Q Consensus       435 VIGGp  439 (488)
                      |+...
T Consensus       106 v~~~~  110 (203)
T 3h2b_A          106 LLAWY  110 (203)
T ss_dssp             EEEES
T ss_pred             EEehh
Confidence            98754

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.16  E-value=0.044  Score=50.55  Aligned_cols=77  Identities=16%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+... ........+..+|+.++.-        ..+.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYR---YIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCE---EEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence            356789999999999999999888753   788999999888777643 1112233356677766541        1246


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      ||+|+....
T Consensus       105 fD~v~~~~~  113 (263)
T 2yqz_A          105 VHGVIVVHL  113 (263)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEECCc
Confidence            999987643

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.16  E-value=0.015  Score=48.40  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=34.1

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++..|++|||++++|..|+..++-+  ++.-++.+|..+
T Consensus        31 e~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~   68 (83)
T 1veg_A           31 ESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG   68 (83)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            47789999999999999999999987  778899999854

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=95.14  E-value=0.021  Score=51.50  Aligned_cols=72  Identities=11%  Similarity=-0.016  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.|.   .++++|+++.+....+......  ....+..+|+.++..         .+.||
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD  116 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD  116 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence            457899999999999999998874   4789999999888877654321  123356788877652         25799


Q ss_pred             EEEecC
Q 011347          434 FVICQN  439 (488)
Q Consensus       434 LVIGGp  439 (488)
                      +|+...
T Consensus       117 ~v~~~~  122 (216)
T 3ofk_A          117 LIVVAE  122 (216)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            999753

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.11  E-value=0.035  Score=53.25  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh-----------------cCCCCCcceeccccc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA  416 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~-----------------~n~~g~lv~~~DI~~  416 (488)
                      .+.+|||+=||.|....-|.+.|++   |++||+++.+.+..+.....                 .......++.+|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            5679999999999999999999984   78999999998877542210                 001122356688877


Q ss_pred             cChhhHHHhhhccCCccEEEe
Q 011347          417 LTTKKFESLIHKLGSIDFVIC  437 (488)
Q Consensus       417 L~~~~Ie~l~~~~g~~DLVIG  437 (488)
                      +....       .+.||+|+.
T Consensus       145 l~~~~-------~~~FD~V~~  158 (252)
T 2gb4_A          145 LPRAN-------IGKFDRIWD  158 (252)
T ss_dssp             GGGGC-------CCCEEEEEE
T ss_pred             CCccc-------CCCEEEEEE
Confidence            65321       257999984

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.07  E-value=0.03  Score=50.74  Aligned_cols=79  Identities=13%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhH
Q 011347          343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF  422 (488)
Q Consensus       343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~I  422 (488)
                      +.+..+.... .+.+|||+=||.|.+...|.+.|.+   |+++|+++...+..+..+..    +..++.+|+.++..   
T Consensus        32 ~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~---  100 (250)
T 2p7i_A           32 FMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL---  100 (250)
T ss_dssp             HHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC---
T ss_pred             HHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc---
Confidence            3444444433 4568999999999999999988863   68899999988777764321    23345677765521   


Q ss_pred             HHhhhccCCccEEEec
Q 011347          423 ESLIHKLGSIDFVICQ  438 (488)
Q Consensus       423 e~l~~~~g~~DLVIGG  438 (488)
                            .+.||+|+..
T Consensus       101 ------~~~fD~v~~~  110 (250)
T 2p7i_A          101 ------PRRYDNIVLT  110 (250)
T ss_dssp             ------SSCEEEEEEE
T ss_pred             ------CCcccEEEEh
Confidence                  1457777754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.06  E-value=0.049  Score=50.78  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             ccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc
Q 011347          337 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  416 (488)
Q Consensus       337 qvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~  416 (488)
                      +...+..++..+..  ..+.+|||+-||.|.+...|.+.+.   .++++|+++......+......+.....+..+|+.+
T Consensus        22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~   96 (260)
T 1vl5_A           22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ   96 (260)
T ss_dssp             -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred             CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence            44455555555432  3567999999999999999988874   478999999988777765443322233456688876


Q ss_pred             cChhhHHHhhhccCCccEEEecCCCC
Q 011347          417 LTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       417 L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      +.-.        -+.||+|+...-.+
T Consensus        97 l~~~--------~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           97 MPFT--------DERFHIVTCRIAAH  114 (260)
T ss_dssp             CCSC--------TTCEEEEEEESCGG
T ss_pred             CCCC--------CCCEEEEEEhhhhH
Confidence            5411        14799998765433

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=95.01  E-value=0.057  Score=51.84  Aligned_cols=65  Identities=22%  Similarity=0.124  Sum_probs=47.5

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceeccc
Q 011347          349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI  414 (488)
Q Consensus       349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI  414 (488)
                      .++.+.+.+|+|+-||.|-+++.+-+.|-. .-|+++|+++.+....+.+-...+-.. ..+..+|.
T Consensus        10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~   75 (225)
T 3kr9_A           10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG   75 (225)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred             HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch
Confidence            344567789999999999999999998843 458899999999988887665433221 12344555

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.01  E-value=0.023  Score=55.18  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-----------CCCCcceeccccccChhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK  421 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-----------~~g~lv~~~DI~~L~~~~  421 (488)
                      +.+.+||||.||.|++...+.+.|.  .-+.+||+|+...+..+.++ ..+           .....++.+|..+.    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~----  146 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF----  146 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence            4567899999999999998887753  45789999999999888876 221           11122344555422    


Q ss_pred             HHHhhhccCCccEEEecCCC
Q 011347          422 FESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      +.   . .+.+|+|+.-+|+
T Consensus       147 l~---~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          147 IK---N-NRGFDVIIADSTD  162 (281)
T ss_dssp             HH---H-CCCEEEEEEECCC
T ss_pred             hc---c-cCCeeEEEECCCC
Confidence            11   1 3579999988876

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=95.00  E-value=0.047  Score=47.34  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+...+.+.. +-..++++|+++...+..+.+....+....++..+|..+    .++   ...+.+|
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence            45789999999999999887762 113478999999988887765543332212234455432    121   1116799


Q ss_pred             EEEecCCCCC
Q 011347          434 FVICQNSVPQ  443 (488)
Q Consensus       434 LVIGGpPCQ~  443 (488)
                      +|+.+.+...
T Consensus        97 ~i~~~~~~~~  106 (178)
T 3hm2_A           97 VIFIGGGLTA  106 (178)
T ss_dssp             EEEECC-TTC
T ss_pred             EEEECCcccH
Confidence            9997665543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=94.98  E-value=0.025  Score=52.68  Aligned_cols=79  Identities=13%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChhHHHHHH--cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~--aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+-||.|.+++.|..  .|.   -|+++|+++.+....+.+....+.....++.+|+.++...     ....+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~  140 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRE  140 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccC
Confidence            3567899999999988887774  343   3789999999888887765544332333556776554310     00125


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       141 ~fD~V~~~~  149 (240)
T 1xdz_A          141 SYDIVTARA  149 (240)
T ss_dssp             CEEEEEEEC
T ss_pred             CccEEEEec
Confidence            799999644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=94.95  E-value=0.075  Score=48.11  Aligned_cols=78  Identities=8%  Similarity=0.026  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCcceeccccccChhhHHHhhhc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-----g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+..     ...+..+|+..+..        .
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~   99 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R   99 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence            4568999999999999999987632 34789999999988887755322211     12345567654332        1


Q ss_pred             cCCccEEEecCC
Q 011347          429 LGSIDFVICQNS  440 (488)
Q Consensus       429 ~g~~DLVIGGpP  440 (488)
                      .+.||+|+....
T Consensus       100 ~~~fD~v~~~~~  111 (217)
T 3jwh_A          100 FHGYDAATVIEV  111 (217)
T ss_dssp             GCSCSEEEEESC
T ss_pred             CCCcCEEeeHHH
Confidence            257888885543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=94.95  E-value=0.064  Score=48.52  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=37.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+....
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            4578999999999999999987732 347899999999888877553

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=94.94  E-value=0.031  Score=53.32  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=52.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+-||.|...+.+..+.=. .-|+++|+++.+....+.+....+..+..++.+|+.++....     ...+.|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence            45789999999999888877765211 237899999999988887665443323335566665543210     012579


Q ss_pred             cEEEe
Q 011347          433 DFVIC  437 (488)
Q Consensus       433 DLVIG  437 (488)
                      |+|+.
T Consensus       153 D~I~s  157 (249)
T 3g89_A          153 ARAVA  157 (249)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99985

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=94.93  E-value=0.025  Score=45.66  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=33.5

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||++++|..|+..+|.  .++.-++.|+..+
T Consensus        31 ~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~   68 (73)
T 1wiv_A           31 SSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence            4678999999999999999999997  6788889998765

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.93  E-value=0.083  Score=50.90  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeC-CHHHHHHHHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW  399 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEi-d~~a~~t~~~~~  399 (488)
                      .+.+||||.||.|.+++.+.+.|.  ..|+++|+ ++.+....+.+.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence            456899999999999999999885  24789999 899988887765

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=94.92  E-value=0.036  Score=50.55  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=51.8

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+.+|||+-||.|.+...+.+. .   .++++|+++...+..+......+ ....+...|+.++..         .+
T Consensus        30 ~~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~   95 (243)
T 3d2l_A           30 QVEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PE   95 (243)
T ss_dssp             HSCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SS
T ss_pred             HcCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CC
Confidence            3445689999999999999888877 3   47899999998888776554322 223345677766531         14


Q ss_pred             CccEEEec
Q 011347          431 SIDFVICQ  438 (488)
Q Consensus       431 ~~DLVIGG  438 (488)
                      .+|+|+..
T Consensus        96 ~fD~v~~~  103 (243)
T 3d2l_A           96 PVDAITIL  103 (243)
T ss_dssp             CEEEEEEC
T ss_pred             CcCEEEEe
Confidence            68888854

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=94.91  E-value=0.025  Score=52.30  Aligned_cols=76  Identities=20%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++.+.+..+......+.....++..|+.++..        ..+.||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD  148 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD  148 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence            468999999999999998877763  3478999999998887765433211111244566665542        124699


Q ss_pred             EEEecC
Q 011347          434 FVICQN  439 (488)
Q Consensus       434 LVIGGp  439 (488)
                      +|+...
T Consensus       149 ~v~~~~  154 (241)
T 2ex4_A          149 VIWIQW  154 (241)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            998553

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=94.91  E-value=0.024  Score=39.65  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=23.2

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSK   27 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~   27 (488)
                      +++..|++|||+++++..|+..|+-+
T Consensus         6 ~~i~~L~~mGf~~~~a~~AL~~~~~n   31 (40)
T 1z96_A            6 SKIAQLVSMGFDPLEAAQALDAANGD   31 (40)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            46788999999999999999999764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=94.84  E-value=0.05  Score=55.01  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+||||.||.|.+++.+.++|.  +-|+++|++ ......+......+... ..++.+|+.++...         +.+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~  130 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV  130 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence            567899999999999999999986  347899999 55555555443322222 23567888776521         579


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+..+
T Consensus       131 D~Iv~~~  137 (376)
T 3r0q_C          131 DVIISEW  137 (376)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999744

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=94.80  E-value=0.034  Score=51.92  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+.+.+.+.+-. ..|++||+++.+....+.+....+..+..++.+|+.++-...+     ..+.+|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-----CCCChh
Confidence            4568999999999999988776432 2478999999988777665443332333355667654311111     136799


Q ss_pred             EEEecCCCCC
Q 011347          434 FVICQNSVPQ  443 (488)
Q Consensus       434 LVIGGpPCQ~  443 (488)
                      +|+--+|+.-
T Consensus       108 ~v~~~~~~p~  117 (218)
T 3dxy_A          108 MVQLFFPDPW  117 (218)
T ss_dssp             EEEEESCCCC
T ss_pred             eEEEeCCCCc
Confidence            9988766553

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.79  E-value=0.043  Score=52.60  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC---CCCcceeccccccChhhHHHhhhccCC
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~---~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +-+||||-||.|.+...|.+.|.+   |+++|+++......+......+.   ....++.+|+.++..         .+.
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~  150 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKR  150 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCC
T ss_pred             CCcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCC
Confidence            348999999999999999999864   68899999988887765443210   123356788877642         257


Q ss_pred             ccEEEe
Q 011347          432 IDFVIC  437 (488)
Q Consensus       432 ~DLVIG  437 (488)
                      ||+|+.
T Consensus       151 fD~v~~  156 (299)
T 3g2m_A          151 FGTVVI  156 (299)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            897774

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=94.79  E-value=0.055  Score=49.79  Aligned_cols=72  Identities=8%  Similarity=0.005  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceecccc-ccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~-~L~~~~Ie~l~~~~g~  431 (488)
                      +.+.+|||+-||.|.+...|.+.|.+   |+++|+++......+..     .....++.+|+. .+...       ..+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~-------~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAAR---WAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG-------LGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT-------CCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc-------CCCC
Confidence            46789999999999999999998863   68999999988777653     223346678884 33210       0257


Q ss_pred             ccEEEecC
Q 011347          432 IDFVICQN  439 (488)
Q Consensus       432 ~DLVIGGp  439 (488)
                      ||+|+...
T Consensus       112 fD~v~~~~  119 (226)
T 3m33_A          112 FGLIVSRR  119 (226)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99998763

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=94.78  E-value=0.054  Score=50.38  Aligned_cols=84  Identities=13%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|..+..|.+++- -..|+++|+++...+..+.++...+.. ...++.+|+.+.-.+   .+   .+.|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence            457899999999999999988432 234789999999998888877654432 233566777654220   11   2579


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|+-..++..+
T Consensus       144 D~V~~~~~~~~~  155 (232)
T 3ntv_A          144 DMIFIDAAKAQS  155 (232)
T ss_dssp             EEEEEETTSSSH
T ss_pred             cEEEEcCcHHHH
Confidence            999977766544

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=94.72  E-value=0.039  Score=53.89  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh---hhHHHhhhcc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT---KKFESLIHKL  429 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~---~~Ie~l~~~~  429 (488)
                      +.+.+||||-||.|.++..|.+.|.+   |+++|+++...+..+.....     . .+..|+.+++.   ..+      .
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~-----~-~v~~~~~~~~~~~~~~~------~  108 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALAD-----R-CVTIDLLDITAEIPKEL------A  108 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSS-----S-CCEEEECCTTSCCCGGG------T
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHh-----c-cceeeeeeccccccccc------C
Confidence            45679999999999999999999864   68899999998888764321     1 23455555543   111      2


Q ss_pred             CCccEEEecCCCCCc
Q 011347          430 GSIDFVICQNSVPQI  444 (488)
Q Consensus       430 g~~DLVIGGpPCQ~F  444 (488)
                      +.||+|+.....+.|
T Consensus       109 ~~fD~Vv~~~~l~~~  123 (261)
T 3iv6_A          109 GHFDFVLNDRLINRF  123 (261)
T ss_dssp             TCCSEEEEESCGGGS
T ss_pred             CCccEEEEhhhhHhC
Confidence            579999987655444

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=94.71  E-value=0.079  Score=48.14  Aligned_cols=81  Identities=14%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|..++.|.+.   +.   .|+++|+++...+..+.++...+... ..++.+|+.+.    +..+....
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~  136 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAG  136 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTT
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhcc
Confidence            3468999999999999998875   43   37899999999888888776543322 22455666432    22111111


Q ss_pred             --CCccEEEecCCC
Q 011347          430 --GSIDFVICQNSV  441 (488)
Q Consensus       430 --g~~DLVIGGpPC  441 (488)
                        +.||+|+--++.
T Consensus       137 ~~~~fD~v~~~~~~  150 (225)
T 3tr6_A          137 QAWQYDLIYIDADK  150 (225)
T ss_dssp             CTTCEEEEEECSCG
T ss_pred             CCCCccEEEECCCH
Confidence              679999965553

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=94.71  E-value=0.079  Score=50.78  Aligned_cols=73  Identities=18%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+|||+-||.|++...+.+. |.+   |+++|+++...+..+......+.. ...+..+|+.++           .+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~  136 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE  136 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence            35679999999999999988776 843   789999999888877765443322 223566787765           15


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       137 ~fD~v~~~~  145 (302)
T 3hem_A          137 PVDRIVSLG  145 (302)
T ss_dssp             CCSEEEEES
T ss_pred             CccEEEEcc
Confidence            799998653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=94.69  E-value=0.068  Score=48.14  Aligned_cols=73  Identities=22%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+....    ....+..+|+.++...         +.||
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD  108 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID  108 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence            5678999999999999999998864   6889999998877765332    1233566888776421         5799


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+......
T Consensus       109 ~v~~~~~l~  117 (220)
T 3hnr_A          109 TIVSTYAFH  117 (220)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECcchh
Confidence            998765433

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=94.67  E-value=0.072  Score=48.07  Aligned_cols=84  Identities=19%  Similarity=0.131  Sum_probs=55.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+-||.|.+...+.+.+-+-..++++|+++...+..+......+.....+..+|+...-.        ..+.+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  147 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPY  147 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCe
Confidence            3567999999999999988877651112478999999988877765543322222344566632211        12579


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |+|+...++..+
T Consensus       148 D~v~~~~~~~~~  159 (215)
T 2yxe_A          148 DRIYTTAAGPKI  159 (215)
T ss_dssp             EEEEESSBBSSC
T ss_pred             eEEEECCchHHH
Confidence            999988776654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=94.62  E-value=0.043  Score=51.63  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      .+.+.+|||+-||.|++...+.+.|.  ..++++|+++......+......+. ....+..+|+.++.-.       ..+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~  132 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK  132 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence            35678999999999999999988885  2478999999998887765543221 1123456777665310       124


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       133 ~fD~v~~~~  141 (298)
T 1ri5_A          133 EFDVISSQF  141 (298)
T ss_dssp             CEEEEEEES
T ss_pred             CcCEEEECc
Confidence            688887654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=94.59  E-value=0.038  Score=59.11  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=61.6

Q ss_pred             hhhhhcccCcchhh-hccccccCCCCCcccccCCCCChhHHHHHHc----CC-------------eeeeEEEeeCCHHHH
Q 011347          331 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNR  392 (488)
Q Consensus       331 ~Lgnsfqvdti~~~-lsvLK~~fp~~itVLDLFSGiGGlslGL~~a----Gi-------------~~k~vvsVEid~~a~  392 (488)
                      ..|-.|....+... ...+.+  ..+.+|+|..||.|||.+.+.+.    +-             ....++++|+++.+.
T Consensus       147 ~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~  224 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  224 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence            34555544443333 233322  24689999999999998776432    10             112478999999998


Q ss_pred             HHHHHHhhhcCCCC-----CcceeccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 011347          393 RILKRWWESSGQTG-----ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  445 (488)
Q Consensus       393 ~t~~~~~~~~n~~g-----~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  445 (488)
                      ++.+.+..-++...     ..+..+|.-...       ....+.||+|++-||.....
T Consensus       225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             HHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------HHTSCCEEEEEECCCCTTCS
T ss_pred             HHHHHHHHHhCCCccccccCCeEeCCCcccc-------cccccCCeEEEECCCccccc
Confidence            88776543222221     224455542211       01236899999999987655

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=94.59  E-value=0.032  Score=50.75  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347          347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      .|+.+.+.+.+|||+-||.|.+...|.+.|.   .+.++|+++......+...     ....+..+|+.++..       
T Consensus        33 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------   97 (239)
T 3bxo_A           33 LVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-------   97 (239)
T ss_dssp             HHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-------
T ss_pred             HHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-------
Confidence            3344346678999999999999999988875   3688999999887776532     123355677765532       


Q ss_pred             hccCCccEEEe
Q 011347          427 HKLGSIDFVIC  437 (488)
Q Consensus       427 ~~~g~~DLVIG  437 (488)
                        .+.+|+|+.
T Consensus        98 --~~~~D~v~~  106 (239)
T 3bxo_A           98 --GRKFSAVVS  106 (239)
T ss_dssp             --SSCEEEEEE
T ss_pred             --CCCCcEEEE
Confidence              146788873

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=94.57  E-value=0.045  Score=50.33  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHH-cCC-----eeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceec
Q 011347          344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIE  412 (488)
Q Consensus       344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi-----~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~  412 (488)
                      .+..|......+.+|||+-||.|.++..|.+ .|.     . ..|+++|+++...+..+.+.....     .....+..+
T Consensus        74 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            3444443345578999999999999988766 441     0 137899999998877766543211     112234556


Q ss_pred             cccccChhhHHHhhhccCCccEEEecCCCCCc
Q 011347          413 DIQALTTKKFESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       413 DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                      |+.+--.        ..+.||+|+...++..+
T Consensus       153 d~~~~~~--------~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          153 DGRKGYP--------PNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             CGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred             CcccCCC--------cCCCccEEEECCchHHH
Confidence            7654111        12579999988887655

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=94.56  E-value=0.052  Score=54.24  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.++..+.++|.  .-|+++|+++ .....+......+..+ ..++.+|+.++.-.        .+.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f  134 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP--------VEKV  134 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS--------SSCE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC--------CCce
Confidence            457899999999999999999986  3478999996 4444444333222222 23567888776311        2579


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+.-++
T Consensus       135 D~Iis~~~  142 (349)
T 3q7e_A          135 DIIISEWM  142 (349)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccc
Confidence            99997543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=94.54  E-value=0.074  Score=50.09  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc-C--CCCCcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~-n--~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+.||.|.++..+.++ |-. ..++++|+++.+.+..+.+.... +  .....+..+|+.+...        ..
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~  169 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD  169 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence            4678999999999999988874 311 23789999999888877765432 1  1122345677766521        12


Q ss_pred             CCccEEEecCC
Q 011347          430 GSIDFVICQNS  440 (488)
Q Consensus       430 g~~DLVIGGpP  440 (488)
                      +.+|+|+...|
T Consensus       170 ~~~D~v~~~~~  180 (280)
T 1i9g_A          170 GSVDRAVLDML  180 (280)
T ss_dssp             TCEEEEEEESS
T ss_pred             CceeEEEECCc
Confidence            47999998665

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=94.53  E-value=0.084  Score=48.79  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=50.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+-||.|.+...|.+. | . ..|+++|+++.+.+..+.....  .....++.+|+.+...  .   ....+.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~--~---~~~~~~  143 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQE--Y---ANIVEK  143 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGG--G---TTTSCC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCccc--c---cccCcc
Confidence            35678999999999999888765 5 2 2478999999988777654322  1233345677765211  0   000157


Q ss_pred             ccEEEec
Q 011347          432 IDFVICQ  438 (488)
Q Consensus       432 ~DLVIGG  438 (488)
                      ||+|+..
T Consensus       144 ~D~v~~~  150 (230)
T 1fbn_A          144 VDVIYED  150 (230)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999843

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=94.51  E-value=0.084  Score=50.92  Aligned_cols=52  Identities=17%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347          350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  402 (488)
Q Consensus       350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~  402 (488)
                      ++.+.+-+|+|+=||.|-+.+.+-+.|.. ..|+++|+++.+....+.+-...
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~   68 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEH   68 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            44556789999999999999999998843 45889999999998888766543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.50  E-value=0.11  Score=47.40  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+.||.|.++..|.+. |-. ..|+++|+++.+.+..+.....  ..+..++.+|+.+...  +.   ...+.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~~~~~--~~---~~~~~  143 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE--YR---ALVPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG--GT---TTCCC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCCCcch--hh---cccCC
Confidence            35678999999999999988754 421 2478999999876665543321  1233356678765321  10   01247


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      +|+|+...|
T Consensus       144 ~D~v~~~~~  152 (227)
T 1g8a_A          144 VDVIFEDVA  152 (227)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999997666

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.48  E-value=0.032  Score=43.91  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||++++|..|+..+|.. .++.-++.|+...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewLl~~~   49 (64)
T 1whc_A           11 TALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLMEHE   49 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCC-CHHHHHHHHHhCC
Confidence            46789999999999999999999732 5888889999865

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=94.44  E-value=0.068  Score=52.05  Aligned_cols=53  Identities=11%  Similarity=-0.099  Sum_probs=42.8

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347          349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  402 (488)
Q Consensus       349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~  402 (488)
                      .++.+.+-+|+|+=||.|-+.+.+-+.|-. .-|+++|+++.+....+.+-...
T Consensus        16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~   68 (244)
T 3gnl_A           16 ASYITKNERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSS   68 (244)
T ss_dssp             HTTCCSSEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            344556789999999999999999998843 45889999999998888765443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=94.38  E-value=0.065  Score=49.36  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+-||.|.+...+.+. |.   .|+++|+++......+......  ....++.+|+.++...        .+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~  120 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP--------ENN  120 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC--------TTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC--------CCc
Confidence            35679999999999999998876 65   3688999999887776532211  2233566787765311        257


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      ||+|+....
T Consensus       121 fD~v~~~~~  129 (266)
T 3ujc_A          121 FDLIYSRDA  129 (266)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEeHHHH
Confidence            899886543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=94.37  E-value=0.1  Score=48.32  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|.+...+.+.+-  ..|+++|+++...+..+.+....+.....+..+|+. ..   +.    ..+++|
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD  160 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD  160 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence            467899999999999988877652  247899999998887776654332222234456651 11   11    124699


Q ss_pred             EEEecCCCCCc
Q 011347          434 FVICQNSVPQI  444 (488)
Q Consensus       434 LVIGGpPCQ~F  444 (488)
                      +|+...++..+
T Consensus       161 ~Ii~~~~~~~~  171 (235)
T 1jg1_A          161 VIIVTAGAPKI  171 (235)
T ss_dssp             EEEECSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99987776654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=94.36  E-value=0.049  Score=53.34  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      +++.+||||.||.|++...+.+. +.  .-|++||+|+...+..+.+....    +.....++.+|..+.-.       .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence            35579999999999999988776 42  35789999999998888765321    11222345566643211       1


Q ss_pred             ccCCccEEEecCCCC
Q 011347          428 KLGSIDFVICQNSVP  442 (488)
Q Consensus       428 ~~g~~DLVIGGpPCQ  442 (488)
                      ..+.+|+|+..+|+.
T Consensus       160 ~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          160 FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             CSSCEEEEEEEC---
T ss_pred             CCCCceEEEEcCCCc
Confidence            125799999888764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=94.33  E-value=0.098  Score=47.60  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...+.+.|..  .++++|+++......+.....   .+..+..+|+.++..        ..+.+|
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD  109 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD  109 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence            4678999999999999999998862  478899999988777653221   122345567765531        124688


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+....
T Consensus       110 ~v~~~~~  116 (243)
T 3bkw_A          110 LAYSSLA  116 (243)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            8886543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.25  E-value=0.052  Score=59.87  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcC------Ce-----------------------------------eeeEEEeeCCHHHH
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR  392 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aG------i~-----------------------------------~k~vvsVEid~~a~  392 (488)
                      .+.++||.|||.|++.+..-..+      +.                                   -..++++|+|+.+.
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            45789999999999976544321      10                                   02478999999999


Q ss_pred             HHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCccEEEecCCC
Q 011347          393 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       393 ~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      ++-+.+....+... ..+..+|+.++....      ..+.+|+|+.-||=
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY  313 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence            99888766543222 224567777654210      11379999999984

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=94.24  E-value=0.068  Score=49.16  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=56.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      .+.+|||+-||.|++...+.+.  |.   .|+++|+++...+..+.++...+... ..+..+|+.+.-    .... ..+
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~  125 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYP  125 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCC
Confidence            4568999999999999888876  43   47899999999888887765443211 224456665431    1110 125


Q ss_pred             CccEEEecCCCCCc
Q 011347          431 SIDFVICQNSVPQI  444 (488)
Q Consensus       431 ~~DLVIGGpPCQ~F  444 (488)
                      .||+|+...||...
T Consensus       126 ~fD~I~~~~~~~~~  139 (233)
T 2gpy_A          126 LFDVLFIDAAKGQY  139 (233)
T ss_dssp             CEEEEEEEGGGSCH
T ss_pred             CccEEEECCCHHHH
Confidence            79999998888543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=94.24  E-value=0.042  Score=59.03  Aligned_cols=83  Identities=12%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-C-CeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccC-hhhHHHhhhc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALT-TKKFESLIHK  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-G-i~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~-~~~Ie~l~~~  428 (488)
                      .+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++..  ...+..+|.-..+ +.      ..
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~------~~  294 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT------QE  294 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC------SS
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc------cc
Confidence            5679999999999998776543 1 00135789999999988877654322221  1124455543321 00      11


Q ss_pred             cCCccEEEecCCCC
Q 011347          429 LGSIDFVICQNSVP  442 (488)
Q Consensus       429 ~g~~DLVIGGpPCQ  442 (488)
                      .+.||+|+|=||=.
T Consensus       295 ~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          295 PTNFDGVLMNPPYS  308 (542)
T ss_dssp             CCCBSEEEECCCTT
T ss_pred             cccccEEEecCCcC
Confidence            25799999999865

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=94.24  E-value=0.054  Score=50.04  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++...+..+.+.... .....++.+|+.++.. .+     .-+.||
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~-~~-----~~~~fD  130 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAP-TL-----PDGHFD  130 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGG-GS-----CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhc-cc-----CCCceE
Confidence            567999999999999999977764  35789999999988887754322 1222344566654311 01     125799


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+.
T Consensus       131 ~V~~  134 (236)
T 1zx0_A          131 GILY  134 (236)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=94.22  E-value=0.091  Score=52.07  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=54.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +-+||||-||.|.+...+.+.|-.. .++++|+++.+.+..+.+....+.. ..+..+|+.+..          .+.||+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~  264 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM  264 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence            4589999999999999998887432 3678999999888877765443222 223456664321          257999


Q ss_pred             EEecCCCC
Q 011347          435 VICQNSVP  442 (488)
Q Consensus       435 VIGGpPCQ  442 (488)
                      |+..+|..
T Consensus       265 Iv~~~~~~  272 (343)
T 2pjd_A          265 IISNPPFH  272 (343)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988864

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.21  E-value=0.048  Score=42.92  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=32.8

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||++++|..|+..+|.. .++.-++.|+..+
T Consensus        21 ~~i~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewL~~~~   59 (64)
T 2cpw_A           21 SALDVLLSMGFPRARAQKALASTGGR-SVQTACDWLFSHS   59 (64)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTTTS-CHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHhCC
Confidence            35688999999999999999999962 4777788888755

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.14  E-value=0.069  Score=50.07  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+....     .. +...|+.++..        ..+.
T Consensus        52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~~  114 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSGA  114 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTTC
T ss_pred             cCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCCC
Confidence            346679999999999999999988864   6789999998877765321     12 56678876541        1257


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      ||+|+....
T Consensus       115 fD~v~~~~~  123 (260)
T 2avn_A          115 FEAVLALGD  123 (260)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEcch
Confidence            999986443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=94.08  E-value=0.063  Score=49.22  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~-  428 (488)
                      .+.+||||.||.|+.++.+-++   |.   .|+++|+++...+..+.++...+... ..++.+|..++-    +.+... 
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~  130 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKY  130 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhc
Confidence            3568999999999999988774   43   37899999999988888765443221 224556664421    111111 


Q ss_pred             -cCCccEEEecCCCCCc
Q 011347          429 -LGSIDFVICQNSVPQI  444 (488)
Q Consensus       429 -~g~~DLVIGGpPCQ~F  444 (488)
                       .+.||+|+-..++..+
T Consensus       131 ~~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          131 DVDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             CCCCCSEEEECSCGGGH
T ss_pred             CCCceEEEEEcCCcccc
Confidence             1579999877665544

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=94.07  E-value=0.14  Score=46.66  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhcc--C
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G  430 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~--g  430 (488)
                      .+.+|||+.||.|..++.+.++--.-..++++|+++...+..+.++...+.. ...++.+|+.+.    +..+....  +
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~  144 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG  144 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence            4568999999999999988875100124789999999988888877554321 222445666432    22221111  5


Q ss_pred             CccEEEecCCCC
Q 011347          431 SIDFVICQNSVP  442 (488)
Q Consensus       431 ~~DLVIGGpPCQ  442 (488)
                      .||+|+.-+|..
T Consensus       145 ~~D~v~~d~~~~  156 (229)
T 2avd_A          145 TFDVAVVDADKE  156 (229)
T ss_dssp             CEEEEEECSCST
T ss_pred             CccEEEECCCHH
Confidence            799999877644

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=94.05  E-value=0.088  Score=47.21  Aligned_cols=75  Identities=24%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347          348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      |+.+.+.+.+|||+-||.|.+...+   |.  ..++++|+++...+..+...     ....+..+|+.++..        
T Consensus        30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------   91 (211)
T 2gs9_A           30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------   91 (211)
T ss_dssp             HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence            3344446789999999999988776   65  23689999999887776532     223355677776541        


Q ss_pred             ccCCccEEEecCC
Q 011347          428 KLGSIDFVICQNS  440 (488)
Q Consensus       428 ~~g~~DLVIGGpP  440 (488)
                      ..+.+|+|+....
T Consensus        92 ~~~~fD~v~~~~~  104 (211)
T 2gs9_A           92 PGESFDVVLLFTT  104 (211)
T ss_dssp             CSSCEEEEEEESC
T ss_pred             CCCcEEEEEEcCh
Confidence            1247999986543

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.05  E-value=0.046  Score=43.12  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=33.8

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +.+.+|++|||+++.+..|+-.+|. ..++.-++.|++.+
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~n-~~~e~A~~wL~~h~   49 (64)
T 2crn_A           11 SLLEPLLAMGFPVHTALKALAATGR-KTAEEALAWLHDHC   49 (64)
T ss_dssp             SSHHHHHHTSCCHHHHHHHHHHHTS-CCHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC-CCHHHHHHHHHhCC
Confidence            3567899999999999999999987 46888889999876

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=94.00  E-value=0.027  Score=41.80  Aligned_cols=37  Identities=24%  Similarity=0.188  Sum_probs=30.1

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG   40 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~   40 (488)
                      +++.+|+.|||+++.|..|+..||.+  ++.-++.+|..
T Consensus         6 eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~~   42 (47)
T 1dv0_A            6 EAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLSQ   42 (47)
T ss_dssp             HHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            46789999999999999999999954  55557777653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=93.95  E-value=0.074  Score=51.53  Aligned_cols=80  Identities=16%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      +++.+||||.||.|++...+.+. |.  .-|.+||+|+...+..+.++...    +.+...++.+|..+.    ++.   
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~~---  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IAK---  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HHT---
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hhh---
Confidence            45689999999999999888776 53  45789999999999988876421    112233556666431    111   


Q ss_pred             ccCCccEEEecCCC
Q 011347          428 KLGSIDFVICQNSV  441 (488)
Q Consensus       428 ~~g~~DLVIGGpPC  441 (488)
                      ..+.+|+|+-.+|.
T Consensus       145 ~~~~fD~Ii~d~~~  158 (275)
T 1iy9_A          145 SENQYDVIMVDSTE  158 (275)
T ss_dssp             CCSCEEEEEESCSS
T ss_pred             CCCCeeEEEECCCC
Confidence            12579999987765

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=93.92  E-value=0.14  Score=47.24  Aligned_cols=73  Identities=25%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+=||.|.+...|.+. |.+   ++++|+++...+..+......+.. ...+..+|+.++..         .+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~  102 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE  102 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence            35679999999999999888765 653   589999999887777654432221 22345677766542         14


Q ss_pred             CccEEEe
Q 011347          431 SIDFVIC  437 (488)
Q Consensus       431 ~~DLVIG  437 (488)
                      .||+|+.
T Consensus       103 ~fD~V~~  109 (256)
T 1nkv_A          103 KCDVAAC  109 (256)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            6787775

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=93.92  E-value=0.06  Score=52.86  Aligned_cols=102  Identities=10%  Similarity=0.032  Sum_probs=63.7

Q ss_pred             HhhhhhcccC--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCe-eeeEEEeeCCHHHHHHHHHHhhhcCCCC
Q 011347          330 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTG  406 (488)
Q Consensus       330 k~Lgnsfqvd--ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~-~k~vvsVEid~~a~~t~~~~~~~~n~~g  406 (488)
                      |.+|-.|-+|  .+..++..+.  ...+.+|||+=||.|.++..|.+.+-+ -..|+++|+|+.....++... .   ..
T Consensus        18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~   91 (279)
T 3uzu_A           18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---EL   91 (279)
T ss_dssp             CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GG
T ss_pred             ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CC
Confidence            3445555443  2333333332  124678999999999999999887642 011689999999998887652 1   12


Q ss_pred             CcceeccccccChhhHHHhhhcc-CCccEEEecCC
Q 011347          407 ELVQIEDIQALTTKKFESLIHKL-GSIDFVICQNS  440 (488)
Q Consensus       407 ~lv~~~DI~~L~~~~Ie~l~~~~-g~~DLVIGGpP  440 (488)
                      ..++.+|+.+++-.++   .... ...+.|+|-.|
T Consensus        92 v~~i~~D~~~~~~~~~---~~~~~~~~~~vv~NlP  123 (279)
T 3uzu_A           92 LELHAGDALTFDFGSI---ARPGDEPSLRIIGNLP  123 (279)
T ss_dssp             EEEEESCGGGCCGGGG---SCSSSSCCEEEEEECC
T ss_pred             cEEEECChhcCChhHh---cccccCCceEEEEccC
Confidence            3367799998875433   1100 13456777776

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=93.92  E-value=0.11  Score=51.83  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=51.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.++..+.++|.  .-|+++|+++.+ ...+......+. ....++.+|+.++..         .+.+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~  117 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  117 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence            457899999999999999988885  347899999744 444443322221 123356678776531         1479


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+...+
T Consensus       118 D~Ivs~~~  125 (348)
T 2y1w_A          118 DIIISEPM  125 (348)
T ss_dssp             EEEEECCC
T ss_pred             eEEEEeCc
Confidence            99998765

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=93.90  E-value=0.057  Score=40.87  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             hhhhhHHhcCC-CHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf-~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++..|++||| +++.+..|+..+|-+  ++.-++.++..+
T Consensus        13 ~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~   51 (53)
T 2knz_A           13 QQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence            46789999999 889999999999974  667788887654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=93.89  E-value=0.06  Score=49.51  Aligned_cols=74  Identities=16%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.|.  ..+.++|+++......+......  ....+..+|+.++..        ..+.||
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence            568999999999999999888773  34789999999888877644221  122345677765531        124689


Q ss_pred             EEEecC
Q 011347          434 FVICQN  439 (488)
Q Consensus       434 LVIGGp  439 (488)
                      +|+...
T Consensus       161 ~v~~~~  166 (254)
T 1xtp_A          161 LIVIQW  166 (254)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            888644

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=93.89  E-value=0.14  Score=45.36  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             cccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCCccE
Q 011347          357 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       357 tVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +|||+-||.|.+...|.+. |.   .++++|+++......+......+.. ...+...|+.++.-        ..+.+|+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence            8999999999999999886 42   4789999999888887765443322 23356678876541        1257999


Q ss_pred             EEecCCCC
Q 011347          435 VICQNSVP  442 (488)
Q Consensus       435 VIGGpPCQ  442 (488)
                      |+......
T Consensus       115 v~~~~~l~  122 (219)
T 3dlc_A          115 IVSRGSVF  122 (219)
T ss_dssp             EEEESCGG
T ss_pred             EEECchHh
Confidence            99765433

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.84  E-value=0.048  Score=44.12  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||+++++..|+..+|.. .++.-++.|+..+
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~n~-~ve~A~ewL~~~~   49 (74)
T 2dag_A           11 SVIIQLVEMGFPMDACRKAVYYTGNS-GAEAAMNWVMSHM   49 (74)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHhCC
Confidence            45688999999999999999999962 5778889999876

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=93.81  E-value=0.059  Score=45.71  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=51.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh-hhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~-~~Ie~l~~~~g  430 (488)
                      ..+.+|||+-||.|++...+.+. |-. ..++++|+++ ....          ....+...|+.+... +.+.... ..+
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence            35678999999999999988776 422 2367899998 4211          122245677766431 1111111 125


Q ss_pred             CccEEEecCCCCCcc
Q 011347          431 SIDFVICQNSVPQIP  445 (488)
Q Consensus       431 ~~DLVIGGpPCQ~FS  445 (488)
                      .+|+|+..+|+..+.
T Consensus        88 ~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEEECCCCCCCS
T ss_pred             ceeEEEECCCccccC
Confidence            799999999887654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=93.80  E-value=0.046  Score=52.53  Aligned_cols=76  Identities=21%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+.||.|.++..|.+.|-  .-|+++|+|+.....++..    ......++.+|+.+++-.++      .+ ..
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~------~~-~~   97 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL------GK-EL   97 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS------CS-SE
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc------cC-Cc
Confidence            456899999999999999988862  2478999999988877642    12223467789988874432      12 33


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+|-+|=+
T Consensus        98 ~vv~NlPy~  106 (249)
T 3ftd_A           98 KVVGNLPYN  106 (249)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEECchh
Confidence            777877753

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=93.77  E-value=0.18  Score=44.79  Aligned_cols=75  Identities=20%  Similarity=0.106  Sum_probs=50.6

Q ss_pred             CCCCcccccCCCCChh-HHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGA-EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGl-slGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+.+|||+-||.|.+ ...+...|.+   ++++|+++.+.+..+......+ ....+...|+.++..        ..+.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~   89 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDES   89 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCc
Confidence            3467999999999887 3455677764   6889999998887776544322 223356678776541        1146


Q ss_pred             ccEEEecC
Q 011347          432 IDFVICQN  439 (488)
Q Consensus       432 ~DLVIGGp  439 (488)
                      +|+|+...
T Consensus        90 fD~v~~~~   97 (209)
T 2p8j_A           90 MSFVYSYG   97 (209)
T ss_dssp             EEEEEECS
T ss_pred             eeEEEEcC
Confidence            89988653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=93.73  E-value=0.16  Score=48.97  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=50.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+-||.|++...+.+. |.+   |+++|+++......+......+.. ...+..+|+.++.           +
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  154 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E  154 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence            35679999999999999888776 863   688999999888777654432211 1224556665542           4


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       155 ~fD~v~~~~  163 (318)
T 2fk8_A          155 PVDRIVSIE  163 (318)
T ss_dssp             CCSEEEEES
T ss_pred             CcCEEEEeC
Confidence            688887654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=93.71  E-value=0.11  Score=47.74  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+.||.|+++..|.+. |-. ..|+++|+++.+...+...-.. + ....+..+|+.+...  +.   ...+.
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~  147 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAM  147 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCc
Confidence            34678999999999999888765 311 2378999998754433332211 1 233356678775321  11   01257


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      ||+|+..+|
T Consensus       148 ~D~V~~~~~  156 (233)
T 2ipx_A          148 VDVIFADVA  156 (233)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999997555

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=93.67  E-value=0.14  Score=45.80  Aligned_cols=76  Identities=14%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+..      ....+...|+.++.....    ...+.||
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD  118 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYD  118 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCcc
Confidence            3488999999999999999998874   67899999987776642      122244556554421100    0113488


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+......
T Consensus       119 ~v~~~~~l~  127 (227)
T 3e8s_A          119 LICANFALL  127 (227)
T ss_dssp             EEEEESCCC
T ss_pred             EEEECchhh
Confidence            888765443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=93.67  E-value=0.12  Score=49.71  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc----CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhh
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~a----Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      .+.+.+||||=||.|.++..|.+.    |.   -|++||+++...+..+......+.. ...++.+|+.++..       
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-------
Confidence            456789999999999999888764    43   3689999999877776654433221 22256688877642       


Q ss_pred             hccCCccEEEecC
Q 011347          427 HKLGSIDFVICQN  439 (488)
Q Consensus       427 ~~~g~~DLVIGGp  439 (488)
                         +++|+|+...
T Consensus       138 ---~~~d~v~~~~  147 (261)
T 4gek_A          138 ---ENASMVVLNF  147 (261)
T ss_dssp             ---CSEEEEEEES
T ss_pred             ---cccccceeee
Confidence               4688888654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=93.66  E-value=0.12  Score=46.16  Aligned_cols=72  Identities=18%  Similarity=0.193  Sum_probs=48.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+-||.|.+...+.+.|.   .++++|+++......+...       ..+...|+.++... +     ..+.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence            4678999999999999999988874   3788999999876665321       12455676643211 0     11467


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+....
T Consensus        95 D~v~~~~~  102 (230)
T 3cc8_A           95 DCVIFGDV  102 (230)
T ss_dssp             EEEEEESC
T ss_pred             CEEEECCh
Confidence            88776543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=93.56  E-value=0.13  Score=51.27  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.+++.+.++|.  .-|+++|+++ .....+......+. ....++.+|+.++...        .+.+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~  132 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKV  132 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCE
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC--------CCcE
Confidence            456899999999999999999985  3478999997 55555554433222 2233566788766311        1479


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+...
T Consensus       133 D~Ivs~~  139 (340)
T 2fyt_A          133 DVIISEW  139 (340)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=93.54  E-value=0.17  Score=46.59  Aligned_cols=74  Identities=9%  Similarity=0.014  Sum_probs=52.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+|||+-||.|.+...+.+.  |..   ++++|+++......+..     .....+..+|+.++..         .+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~---v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~   94 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNV---ITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQ   94 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTS---EEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cC
Confidence            35678999999999999988877  653   68899999987777653     1223356678776541         14


Q ss_pred             CccEEEecCCCCC
Q 011347          431 SIDFVICQNSVPQ  443 (488)
Q Consensus       431 ~~DLVIGGpPCQ~  443 (488)
                      .||+|+.....+-
T Consensus        95 ~fD~v~~~~~l~~  107 (259)
T 2p35_A           95 KADLLYANAVFQW  107 (259)
T ss_dssp             CEEEEEEESCGGG
T ss_pred             CcCEEEEeCchhh
Confidence            6888887654443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.54  E-value=0.068  Score=51.21  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=37.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      ..+-.|||+|||.|...++..++|-+   ++++|+++.+..+.+...
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~  254 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVL  254 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHH
Confidence            45678999999999999999999964   678999999888776644

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=93.54  E-value=0.15  Score=47.98  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|+.+..+-++   +.   .|+++|+++...+..+.++...+... ..+..+|+.+.    +..+ ...
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~  134 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC  134 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence            4578999999999999988876   43   37899999999888888776543322 22445665432    1111 112


Q ss_pred             CCccEEEecCCCCC
Q 011347          430 GSIDFVICQNSVPQ  443 (488)
Q Consensus       430 g~~DLVIGGpPCQ~  443 (488)
                      +.||+|+-..++..
T Consensus       135 ~~fD~V~~d~~~~~  148 (248)
T 3tfw_A          135 PAFDLIFIDADKPN  148 (248)
T ss_dssp             CCCSEEEECSCGGG
T ss_pred             CCeEEEEECCchHH
Confidence            47999997766654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=93.49  E-value=0.2  Score=47.35  Aligned_cols=73  Identities=15%  Similarity=0.272  Sum_probs=50.3

Q ss_pred             CCCCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+-||.|++...+. ..|.   .|+++|+++......+......+.. ...+..+|+.++.           +
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  128 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E  128 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence            356799999999999998876 6676   3688999999888777654432211 2224556665443           4


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       129 ~fD~v~~~~  137 (287)
T 1kpg_A          129 PVDRIVSIG  137 (287)
T ss_dssp             CCSEEEEES
T ss_pred             CeeEEEEeC
Confidence            688887543

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.49  E-value=0.062  Score=44.48  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||++++|..|+..++.  .++.-++.|+..+
T Consensus        31 ~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~   68 (83)
T 2dai_A           31 AALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA   68 (83)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            3567899999999999999999964  6888899999876

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=93.49  E-value=0.049  Score=52.53  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=51.9

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      ..+.+.+|||+-||.|.+...+..+..+-..|+++|+++......+.+....+..+ ..++.+|+.++..        . 
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~-  185 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R-  185 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence            34567899999999999988873121112247899999999888877654322111 2245677776542        1 


Q ss_pred             CCccEEEec
Q 011347          430 GSIDFVICQ  438 (488)
Q Consensus       430 g~~DLVIGG  438 (488)
                      +.||+|+..
T Consensus       186 ~~fD~v~~~  194 (305)
T 3ocj_A          186 EGYDLLTSN  194 (305)
T ss_dssp             SCEEEEECC
T ss_pred             CCeEEEEEC
Confidence            478888853

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=93.43  E-value=0.17  Score=48.75  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=39.3

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHH
Q 011347          344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      .++.|......+.+|||+-||.|.+...+.+.  +.   .|+++|+++......+..
T Consensus        36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred             HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence            34455544345789999999999999988876  43   478999999987776654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=93.40  E-value=0.19  Score=48.05  Aligned_cols=83  Identities=16%  Similarity=0.102  Sum_probs=55.1

Q ss_pred             CCCCcccccCCCCChhHHHHHH---cCCeeeeEEEeeCCHHHHHHHHHHhhhc--CCCCCcceeccccccChhhHHHhhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHR---LGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~---aGi~~k~vvsVEid~~a~~t~~~~~~~~--n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      ..+.+|||+-||.|.+...|.+   .+   ..|+++|+++......+......  ......++.+|+.++....-..+  
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--  109 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV--  109 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT--
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccc--
Confidence            3678999999999999999884   33   34789999999888777654332  12233456788877652210000  


Q ss_pred             ccCCccEEEecCC
Q 011347          428 KLGSIDFVICQNS  440 (488)
Q Consensus       428 ~~g~~DLVIGGpP  440 (488)
                      ..+.||+|+....
T Consensus       110 ~~~~fD~V~~~~~  122 (299)
T 3g5t_A          110 DKQKIDMITAVEC  122 (299)
T ss_dssp             TSSCEEEEEEESC
T ss_pred             cCCCeeEEeHhhH
Confidence            1257999987653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=93.33  E-value=0.11  Score=49.56  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      ..+.+|||+-||.|.+...|.+.   |.   .|+++|+++......+......+ ....+..+|+.++..         .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~   87 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N   87 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence            35689999999999999998776   44   36889999998887776543221 123356688876542         1


Q ss_pred             CCccEEEecCC
Q 011347          430 GSIDFVICQNS  440 (488)
Q Consensus       430 g~~DLVIGGpP  440 (488)
                      +.||+|+....
T Consensus        88 ~~fD~v~~~~~   98 (284)
T 3gu3_A           88 DKYDIAICHAF   98 (284)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEEECCh
Confidence            47999987553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=93.33  E-value=0.068  Score=49.30  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHH
Q 011347          350 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK  396 (488)
Q Consensus       350 ~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~  396 (488)
                      +.++.+.+|||+-||.|.+...|.+.|.+   |+++|+++......+
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~   80 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE   80 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence            34456789999999999999999998875   588999999776654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=93.31  E-value=0.074  Score=57.05  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=49.3

Q ss_pred             CcccccCCCCChhHHHHHHc--------CC------eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChh
Q 011347          356 LTMLSVFSGIGGAEVTLHRL--------GI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK  420 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~a--------Gi------~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~  420 (488)
                      .+|+|.+||.|||-+.+.+.        +.      .-..++++|+++.+.++.+.+..-++....+ +..+|.-.... 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-  324 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-  324 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence            48999999999998775321        10      0135789999999988877654333222211 13444321110 


Q ss_pred             hHHHhhhccCCccEEEecCCCC
Q 011347          421 KFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       421 ~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                            .....||+|++=||=.
T Consensus       325 ------~~~~~fD~Iv~NPPf~  340 (544)
T 3khk_A          325 ------HPDLRADFVMTNPPFN  340 (544)
T ss_dssp             ------CTTCCEEEEEECCCSS
T ss_pred             ------cccccccEEEECCCcC
Confidence                  0125799999999854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=93.28  E-value=0.082  Score=49.40  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             CCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-C-CcceeccccccChhhHHHhhhccCC
Q 011347          355 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.+|||+-||.|..++.|-++ +-. ..|+++|+++...+..+.++...+.. . ..++.+|..++-.    .+  ..+.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence            458999999999999988763 211 23789999999999998888654332 1 2234455543211    11  0268


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      ||+|+-..+...
T Consensus       130 fD~V~~d~~~~~  141 (221)
T 3dr5_A          130 YQLVFGQVSPMD  141 (221)
T ss_dssp             EEEEEECCCTTT
T ss_pred             cCeEEEcCcHHH
Confidence            999987655443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=93.08  E-value=0.18  Score=49.82  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.+++.+.++|.  .-|+++|+++ .....+......+..+ ..++.+|+.++...        .+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~  106 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP--------FPKV  106 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------SSCE
T ss_pred             CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccCC--------CCcc
Confidence            456899999999999999999885  3478999995 4444454433322212 23556787766411        1479


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+..++
T Consensus       107 D~Ivs~~~  114 (328)
T 1g6q_1          107 DIIISEWM  114 (328)
T ss_dssp             EEEEECCC
T ss_pred             cEEEEeCc
Confidence            99997654

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=93.01  E-value=0.077  Score=46.57  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=33.0

Q ss_pred             hhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            4 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         4 ~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +.+|++||||++.+..|+.++|.  .++...+.|++-+
T Consensus        12 v~~l~~MGFp~~~~~kAl~~~g~--~~e~amewL~~h~   47 (118)
T 4ae4_A           12 VETVVNMGYSYECVLRAMKAAGA--NIEQILDYLFAHG   47 (118)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHCc--CHHHHHHHHHHhc
Confidence            46899999999999999999998  7999999999874

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=92.85  E-value=0.054  Score=52.21  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=52.9

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      ..|..+.+.+-+||||=||.|.++..|...|.+   |++||+++...+..+      .+++..+..+|+.++.-      
T Consensus        31 ~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~------   95 (257)
T 4hg2_A           31 RWLGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL------   95 (257)
T ss_dssp             HHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC------
T ss_pred             HHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc------
Confidence            334445566778999999999999999999864   689999998654332      12333456677766542      


Q ss_pred             hhccCCccEEEec
Q 011347          426 IHKLGSIDFVICQ  438 (488)
Q Consensus       426 ~~~~g~~DLVIGG  438 (488)
                        .-+.||+|+.+
T Consensus        96 --~~~sfD~v~~~  106 (257)
T 4hg2_A           96 --PPASVDVAIAA  106 (257)
T ss_dssp             --CSSCEEEEEEC
T ss_pred             --cCCcccEEEEe
Confidence              12579999874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=92.85  E-value=0.13  Score=50.33  Aligned_cols=82  Identities=24%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc------CC-----CCCcceeccccccChhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK  421 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~------n~-----~g~lv~~~DI~~L~~~~  421 (488)
                      .+.+|||+.||.|.++..+.++ |-. ..|+++|+++.+.+..+.+....      |+     ....+..+|+.+... .
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~  182 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D  182 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence            5678999999999999998876 532 24789999999888877765431      11     122345677766531 1


Q ss_pred             HHHhhhccCCccEEEecCCCC
Q 011347          422 FESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      ++     .+.||+|+...|+.
T Consensus       183 ~~-----~~~fD~V~~~~~~~  198 (336)
T 2b25_A          183 IK-----SLTFDAVALDMLNP  198 (336)
T ss_dssp             ----------EEEEEECSSST
T ss_pred             cC-----CCCeeEEEECCCCH
Confidence            11     14699999776654

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=92.84  E-value=0.11  Score=39.28  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             hhhhhHHhcCC-CHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347            2 EITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFS   39 (488)
Q Consensus         2 ~k~~~l~~mgf-~~~e~~~ai~~~g~~~~~~~l~d~i~a   39 (488)
                      +++..|++||| +++.+..|+..+|-+  ++.-++.++.
T Consensus        14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~   50 (52)
T 2jy5_A           14 QQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG   50 (52)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence            46789999999 888889999999874  6666776664

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=92.77  E-value=0.16  Score=53.57  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||+-||.|.+++.+.+.|.  .-|+++|+++ .....+......+. ....++.+|+.++..         .+.|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f  225 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  225 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence            457899999999999999988874  3478999998 54555544333222 123356678776531         1479


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+..+|
T Consensus       226 D~Ivs~~~  233 (480)
T 3b3j_A          226 DIIISEPM  233 (480)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCc
Confidence            99997554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=92.63  E-value=0.17  Score=47.90  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCC----CCCcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~----~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|.+...|...|.+   |+++|+++...+..+........    ....+..+|+.++..+ +    -..
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD-V----PAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-S----CCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc-c----ccC
Confidence            4578999999999999999999973   68999999988777653211111    0111344555544311 0    112


Q ss_pred             CCccEEEe
Q 011347          430 GSIDFVIC  437 (488)
Q Consensus       430 g~~DLVIG  437 (488)
                      +.||+|+.
T Consensus       129 ~~fD~V~~  136 (293)
T 3thr_A          129 DGFDAVIC  136 (293)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            57999986

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=92.52  E-value=0.013  Score=55.27  Aligned_cols=77  Identities=14%  Similarity=0.040  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+.||.|+++..|.+.|.   -|+++|+|+......+....  ......++.+|+.++.-.       ..+.+ 
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f-   95 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY-   95 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence            567899999999999999988883   37899999987555433211  111223556788766421       01356 


Q ss_pred             EEEecCCCCC
Q 011347          434 FVICQNSVPQ  443 (488)
Q Consensus       434 LVIGGpPCQ~  443 (488)
                      +|++-+|-..
T Consensus        96 ~vv~n~Py~~  105 (245)
T 1yub_A           96 KIVGNIPYHL  105 (245)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEeCCccc
Confidence            7788887553

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=92.43  E-value=0.19  Score=51.69  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCcc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      +-+|||+=||.|-+++-..++|-.  -|++||.++.+..+ +..-..++... ..++.+|+.++..         ..++|
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D  151 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVD  151 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence            457999999999999988999974  48899999754322 22222222222 2256678877642         24799


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +||.
T Consensus       152 vivs  155 (376)
T 4hc4_A          152 AIVS  155 (376)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9984

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.42  E-value=0.13  Score=42.83  Aligned_cols=42  Identities=17%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccccCC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD   45 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~~~~   45 (488)
                      +++.+|++|||++++|..|+..++-+  ++.-++.++......+
T Consensus        23 ~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~~D~D   64 (85)
T 2dkl_A           23 RLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKKVDVD   64 (85)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTSCCSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCcCCcc
Confidence            45688999999999999999777654  7778899998765444

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=92.40  E-value=0.26  Score=45.63  Aligned_cols=62  Identities=10%  Similarity=0.231  Sum_probs=42.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQ  415 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~  415 (488)
                      .+.+|||+-||.|..+..|.+..=.-..|+++|+++...+..+.++...+... ..+..+|+.
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~  122 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL  122 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            45689999999999999887762001247899999999888887765432211 223445554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=92.39  E-value=0.11  Score=51.13  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +++.+||||.||.|++...+.+.+ ....+.+||+|+...+..+.++...    +.....++.+|..+.    ++   ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence            456789999999999999887764 2245789999999998888876431    112223455665432    11   11


Q ss_pred             cCCccEEEecCCC
Q 011347          429 LGSIDFVICQNSV  441 (488)
Q Consensus       429 ~g~~DLVIGGpPC  441 (488)
                      .+.+|+|+..+|.
T Consensus       166 ~~~fD~Ii~d~~~  178 (304)
T 2o07_A          166 QDAFDVIITDSSD  178 (304)
T ss_dssp             SSCEEEEEEECC-
T ss_pred             CCCceEEEECCCC
Confidence            3579999987664

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=92.27  E-value=0.2  Score=47.29  Aligned_cols=86  Identities=12%  Similarity=0.113  Sum_probs=52.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh------cCCCCCcceeccccccChhhHHHhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~------~n~~g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      ..+.+|||+=||.|.+...|.+..=. ..++++|+++......+.....      .......++.+|+.+.    +...+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~  119 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF  119 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC
Confidence            34578999999999999998766311 2478999999887655543211      1122233566777652    11111


Q ss_pred             hccCCccEEEecCCCCCc
Q 011347          427 HKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       427 ~~~g~~DLVIGGpPCQ~F  444 (488)
                       ..+.+|+|+-.+|..-+
T Consensus       120 -~~~~~D~v~~~~~dp~~  136 (235)
T 3ckk_A          120 -YKGQLTKMFFLFPDPHF  136 (235)
T ss_dssp             -CTTCEEEEEEESCC---
T ss_pred             -CCcCeeEEEEeCCCchh
Confidence             12579999877765443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=92.23  E-value=0.31  Score=45.98  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||+=||.|.+...|...|..   |+++|+++......+...     ....+..+|+.++..         .+.||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD  119 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGAE---VLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD  119 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence            4678999999999999999887753   688999999887776532     223356678876542         14689


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+....
T Consensus       120 ~v~~~~~  126 (279)
T 3ccf_A          120 AVFSNAM  126 (279)
T ss_dssp             EEEEESC
T ss_pred             EEEEcch
Confidence            8887654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=92.23  E-value=0.3  Score=46.25  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+-||.|.+...|.+. |.+   ++++|+++......+......+.. ...+..+|+.++.-        ..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~  149 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN  149 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence            45679999999999999988776 763   688999999877766544332211 12345677766531        114


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       150 ~fD~v~~~~  158 (297)
T 2o57_A          150 SYDFIWSQD  158 (297)
T ss_dssp             CEEEEEEES
T ss_pred             CEeEEEecc
Confidence            678777543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=92.14  E-value=0.27  Score=50.24  Aligned_cols=88  Identities=15%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+.+|||++||.||=+..+-.++-. ..|+|+|+++.-.+.++.+-......... ...-.|...+...+...  ..+.|
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~~f  224 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGDTY  224 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STTCE
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccccC
Confidence            4678999999999999988887743 45889999999888877655432211000 00112333344333321  23579


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |.|+-=+||.+-
T Consensus       225 D~VLlDaPCSg~  236 (359)
T 4fzv_A          225 DRVLVDVPCTTD  236 (359)
T ss_dssp             EEEEEECCCCCH
T ss_pred             CEEEECCccCCC
Confidence            999999999863

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=92.10  E-value=0.17  Score=49.14  Aligned_cols=81  Identities=22%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +++.+||+|-||.|++...+.+.. ....+.+||+|+...+..+.++...+    .+...++.+|+.+.    +..   .
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~---~  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LEN---V  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HHH---C
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HHh---C
Confidence            456799999999999998887663 22457899999999988887654321    11222445665432    111   1


Q ss_pred             cCCccEEEecCCC
Q 011347          429 LGSIDFVICQNSV  441 (488)
Q Consensus       429 ~g~~DLVIGGpPC  441 (488)
                      .+.+|+|+..++.
T Consensus       149 ~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          149 TNTYDVIIVDSSD  161 (283)
T ss_dssp             CSCEEEEEEECCC
T ss_pred             CCCceEEEEcCCC
Confidence            3579999986543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=92.05  E-value=0.49  Score=44.04  Aligned_cols=79  Identities=23%  Similarity=0.199  Sum_probs=53.6

Q ss_pred             CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+-||.|.+...+.+ .|.   .|+++|+++......+......+.. ...+..+|+.++.-        ..+.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  129 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS  129 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence            567999999999999988876 464   3688999999887777654433222 12355677776541        1147


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      ||+|+....-.-
T Consensus       130 fD~v~~~~~l~~  141 (273)
T 3bus_A          130 FDAVWALESLHH  141 (273)
T ss_dssp             EEEEEEESCTTT
T ss_pred             ccEEEEechhhh
Confidence            999987554443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=91.85  E-value=0.24  Score=46.27  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=49.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+-||.|.+...+.+.  |.   .++++|+++...+..+...     ....+..+|+.++..        ..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence            45678999999999999888876  64   3788999999877766432     222355677765531        114


Q ss_pred             CccEEEecC
Q 011347          431 SIDFVICQN  439 (488)
Q Consensus       431 ~~DLVIGGp  439 (488)
                      .||+|+...
T Consensus       148 ~fD~v~~~~  156 (269)
T 1p91_A          148 SMDAIIRIY  156 (269)
T ss_dssp             CEEEEEEES
T ss_pred             ceeEEEEeC
Confidence            688887543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=91.61  E-value=0.19  Score=49.63  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcceeccccccChhhHHHhhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n-----~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      +++.+||+|-||.|++...+.+.. ...-+.+||+|+...+..+.++...+     .+...++.+|+.+.    ++.   
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~---  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER---  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence            456799999999999998887652 12357899999999888887764311     12233456666542    111   


Q ss_pred             ccCCccEEEecCCC
Q 011347          428 KLGSIDFVICQNSV  441 (488)
Q Consensus       428 ~~g~~DLVIGGpPC  441 (488)
                      ..+.+|+|+..++.
T Consensus       148 ~~~~fD~Ii~d~~~  161 (314)
T 1uir_A          148 TEERYDVVIIDLTD  161 (314)
T ss_dssp             CCCCEEEEEEECCC
T ss_pred             cCCCccEEEECCCC
Confidence            23579999987654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=91.60  E-value=0.25  Score=43.56  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCe-------eeeEEEeeCCHHHHHHHHHHhhhcCCCCCcce-eccccccChh-hH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF  422 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~-------~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~-~~DI~~L~~~-~I  422 (488)
                      +.+.+||||-||.|+++..+.+. |-.       -..|+++|+++.+.           .....+. .+|+.+.... .+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence            45689999999999999988765 521       01378999998520           1122345 6777654321 11


Q ss_pred             HHhhhccCCccEEEecCCC
Q 011347          423 ESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       423 e~l~~~~g~~DLVIGGpPC  441 (488)
                      .... .-+.||+|+...++
T Consensus        90 ~~~~-~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           90 LEVL-PGRRADVILSDMAP  107 (196)
T ss_dssp             HHHS-GGGCEEEEEECCCC
T ss_pred             HHhc-CCCCCcEEEeCCCC
Confidence            1111 11379999976543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=91.58  E-value=0.19  Score=49.22  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=53.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh---c-CCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~---~-n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +++.+|||+-||.|++...+.+.. ....+++||+|+...+..+.+...   . ......++.+|+.++...    .  .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~--~  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T--P  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S--C
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c--c
Confidence            456799999999999999887762 224578999999998888876521   1 111222455666432110    0  1


Q ss_pred             cCCccEEEecCCC
Q 011347          429 LGSIDFVICQNSV  441 (488)
Q Consensus       429 ~g~~DLVIGGpPC  441 (488)
                      .+.||+|+...|.
T Consensus       167 ~~~fDvIi~d~~~  179 (304)
T 3bwc_A          167 DNTYDVVIIDTTD  179 (304)
T ss_dssp             TTCEEEEEEECC-
T ss_pred             CCceeEEEECCCC
Confidence            2579999986543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=91.34  E-value=0.21  Score=49.68  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +.+.+|||+-||.|++...+.+.. ....+.+||+|+.+.+..+.+....    +.....++.+|+.+.    ++   ..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence            355789999999999998887651 1235789999999999888765421    011222445665432    11   11


Q ss_pred             cCCccEEEecCC
Q 011347          429 LGSIDFVICQNS  440 (488)
Q Consensus       429 ~g~~DLVIGGpP  440 (488)
                      .+.||+|+..++
T Consensus       187 ~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 TNTYDVIIVDSS  198 (321)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCCceEEEECCc
Confidence            257999998664

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=91.34  E-value=0.41  Score=44.79  Aligned_cols=83  Identities=14%  Similarity=0.076  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~-  428 (488)
                      ++-+|||+-||.|+.++.+-++   +.   .++++|+++...+..+.++...+... ..++.+|..++    ++.+... 
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  142 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ  142 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence            3468999999999999888765   43   47899999999999988886543221 12345665432    1222111 


Q ss_pred             --cCCccEEEecCCCCC
Q 011347          429 --LGSIDFVICQNSVPQ  443 (488)
Q Consensus       429 --~g~~DLVIGGpPCQ~  443 (488)
                        .+.||+|+-..+|..
T Consensus       143 ~~~~~fD~I~~d~~~~~  159 (237)
T 3c3y_A          143 ESEGSYDFGFVDADKPN  159 (237)
T ss_dssp             TCTTCEEEEEECSCGGG
T ss_pred             CCCCCcCEEEECCchHH
Confidence              257999997766543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=91.32  E-value=0.34  Score=42.94  Aligned_cols=55  Identities=9%  Similarity=-0.055  Sum_probs=37.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  418 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~  418 (488)
                      +.+.+||||-||.|+++..+.+. +-.-..|+++|+++.+.           ..+..++.+|+.+..
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchh
Confidence            45678999999999999888754 21012478999998521           123335567887654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=91.09  E-value=0.3  Score=47.05  Aligned_cols=81  Identities=12%  Similarity=0.010  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||+=||.|.++. +.+.+ + .-|+++|+|+.....++.....  .....++.+|+.+++-.++.   ...+..|
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~---~~~~~~~   92 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELA---EKMGQPL   92 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHH---HHHTSCE
T ss_pred             CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhh---cccCCce
Confidence            45689999999999999 87632 2 1168999999998888753321  11233677999888754331   0013468


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+|..|=.
T Consensus        93 ~vvsNlPY~  101 (252)
T 1qyr_A           93 RVFGNLPYN  101 (252)
T ss_dssp             EEEEECCTT
T ss_pred             EEEECCCCC
Confidence            999999854

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=91.06  E-value=0.52  Score=40.62  Aligned_cols=69  Identities=14%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+-||.|.+...+.+.+.   .+.++|+++...+..+..     .....+..+| ..+          ..+.+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~----------~~~~~   76 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI----------PDNSV   76 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS----------CTTCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC----------CCCce
Confidence            3567899999999999999998873   578999999988777653     1122234455 111          12579


Q ss_pred             cEEEecCC
Q 011347          433 DFVICQNS  440 (488)
Q Consensus       433 DLVIGGpP  440 (488)
                      |+|+....
T Consensus        77 D~v~~~~~   84 (170)
T 3i9f_A           77 DFILFANS   84 (170)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEccc
Confidence            99986543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=90.79  E-value=0.26  Score=46.71  Aligned_cols=83  Identities=10%  Similarity=0.099  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~-  428 (488)
                      .+-+|||+-||.|..++.|.++   |.   .++++|+++...+..+.++...+... ..++.+|..++    +..+... 
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  151 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE  151 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence            3468999999999999888775   43   37899999999988888876543211 12344565432    1222111 


Q ss_pred             --cCCccEEEecCCCCC
Q 011347          429 --LGSIDFVICQNSVPQ  443 (488)
Q Consensus       429 --~g~~DLVIGGpPCQ~  443 (488)
                        .+.||+|+-..++..
T Consensus       152 ~~~~~fD~V~~d~~~~~  168 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDN  168 (247)
T ss_dssp             GGTTCBSEEEECSCSTT
T ss_pred             CCCCCEEEEEEcCchHH
Confidence              367999998776654

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=90.74  E-value=0.22  Score=36.72  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=26.5

Q ss_pred             hhhhhHHhcCCCHHH-HHHHHHHhCCCCchhhhhhhhhh
Q 011347            2 EITLQLLEMGFSENQ-VSLAIEKFGSKTPISELADKIFS   39 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e-~~~ai~~~g~~~~~~~l~d~i~a   39 (488)
                      +++..|.+|||++++ +..|+..++-+  ++.-+|.++.
T Consensus         9 ~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~   45 (46)
T 2bwb_A            9 HQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN   45 (46)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence            467899999998655 68999999865  4444666553

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=90.68  E-value=0.19  Score=47.47  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=36.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      .+.+||||=||.|.+...+...|+  ..|+++|+++.+.+..+.|.
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~   98 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWL   98 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHH
Confidence            567899999999888777777886  35889999999999888764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=90.58  E-value=0.75  Score=45.10  Aligned_cols=47  Identities=9%  Similarity=0.013  Sum_probs=36.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      +.+.+||||=||.|+....+...|.  ..|+++|+++.+.+..+..+..
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence            5678999999999997666666664  2478999999998888765543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=90.47  E-value=0.21  Score=45.98  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      .+.+|||+-||.|.+...+.+.|.  ..|+++|+++.+....+.+..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence            457899999999999988888886  357899999999888877653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=90.31  E-value=0.65  Score=43.06  Aligned_cols=81  Identities=15%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|..+..+.++   +.   .++++|+++...+..+.++...+... ..+..+|+.+.    +..+....
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~  144 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGK  144 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence            3468999999999999888765   32   37899999999888888775443211 12344554321    22221111


Q ss_pred             --CCccEEEecCCC
Q 011347          430 --GSIDFVICQNSV  441 (488)
Q Consensus       430 --g~~DLVIGGpPC  441 (488)
                        +.||+|+-..++
T Consensus       145 ~~~~fD~V~~d~~~  158 (232)
T 3cbg_A          145 PLPEFDLIFIDADK  158 (232)
T ss_dssp             SCCCEEEEEECSCG
T ss_pred             CCCCcCEEEECCCH
Confidence              679999876554

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=90.27  E-value=0.44  Score=42.97  Aligned_cols=79  Identities=18%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|||+-||.|..+..+.++   |.   .|+++|+++...+..+.++...+... ..++.+|..++    +.   ...
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~  125 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQR  125 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCC
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCC
Confidence            3468999999999999988765   43   47899999999988887765432211 11344554321    11   112


Q ss_pred             CCccEEEecCCCCC
Q 011347          430 GSIDFVICQNSVPQ  443 (488)
Q Consensus       430 g~~DLVIGGpPCQ~  443 (488)
                      + ||+|+-..++..
T Consensus       126 ~-fD~v~~~~~~~~  138 (210)
T 3c3p_A          126 D-IDILFMDCDVFN  138 (210)
T ss_dssp             S-EEEEEEETTTSC
T ss_pred             C-CCEEEEcCChhh
Confidence            4 999987765543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=90.19  E-value=0.31  Score=48.47  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcC----CCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n----~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +++.+||+|-||.|++...+.+.. ....+.+||+|+...+..+.++...+    .....++.+|+.+.    ++   ..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH  178 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence            455789999999999998887652 22457899999999998888764321    11122344555431    11   12


Q ss_pred             cCCccEEEecCC
Q 011347          429 LGSIDFVICQNS  440 (488)
Q Consensus       429 ~g~~DLVIGGpP  440 (488)
                      .+.+|+|+..++
T Consensus       179 ~~~fD~Ii~d~~  190 (314)
T 2b2c_A          179 KNEFDVIITDSS  190 (314)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCceEEEEcCC
Confidence            357999997654

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.19  E-value=0.28  Score=37.42  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             hhhhhHHhcCCCHHHH-HHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~-~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++..|.+|||+++++ ..|+.+++-|  |+.-++.+|...
T Consensus        11 ~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~   49 (54)
T 2dah_A           11 VQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS   49 (54)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            4678999999988875 8999999865  566688888653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=90.09  E-value=0.22  Score=44.99  Aligned_cols=64  Identities=14%  Similarity=0.097  Sum_probs=40.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh----hhcCCCCCcceeccccccC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW----ESSGQTGELVQIEDIQALT  418 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~----~~~n~~g~lv~~~DI~~L~  418 (488)
                      .+.+|||+-||.|.+...|.+.+= -.-|+++|+++.....+..+-    .........++.+|+.++.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~   94 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP   94 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence            567899999999999999988731 134789999998554322111    1111222335567776654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=89.88  E-value=0.14  Score=51.02  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChh
Q 011347          341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  420 (488)
Q Consensus       341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~  420 (488)
                      +...|++++.+  ++-.+||||+|.|.+.+-+-+ |.  +-++.||.++.+.++++.+....  ....++..|...    
T Consensus        80 l~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~----  148 (283)
T 2oo3_A           80 FLEYISVIKQI--NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS----  148 (283)
T ss_dssp             GHHHHHHHHHH--SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred             HHHHHHHHHHh--cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence            45567777763  456799999999997665555 33  45788999999999998654321  112233334321    


Q ss_pred             hHHHhhhccCCccEEEecCCC
Q 011347          421 KFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       421 ~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                      -+..+......+|||.-=||=
T Consensus       149 ~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A          149 KLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             HHHHHCSCTTSCEEEEECCCC
T ss_pred             HHHHhcCCCCCccEEEECCCC
Confidence            122222222369999998884

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=89.87  E-value=0.62  Score=49.17  Aligned_cols=81  Identities=10%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChhHHHHH-HcCCeeeeEEEeeCCHHHHHHHHHHh-------hhcC--CCCCcceeccccccChhhH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKF  422 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~-~aGi~~k~vvsVEid~~a~~t~~~~~-------~~~n--~~g~lv~~~DI~~L~~~~I  422 (488)
                      ..+-+||||=||.|.+.+.+. ..|.  .-+++||+++.+....+.+.       ...+  .....++.+|+.++.-.+ 
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d-  248 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-  248 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc-
Confidence            356789999999999998775 4564  34789999987766555421       1111  122336679998764321 


Q ss_pred             HHhhhccCCccEEEecCCC
Q 011347          423 ESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       423 e~l~~~~g~~DLVIGGpPC  441 (488)
                           .++.+|+|+..++|
T Consensus       249 -----~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          249 -----RIANTSVIFVNNFA  262 (438)
T ss_dssp             -----HHHTCSEEEECCTT
T ss_pred             -----ccCCccEEEEcccc
Confidence                 12469999987776

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=89.86  E-value=0.25  Score=49.57  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +.+.+||||-||.|++...+.+.. ...-|.+||+|+...+..+.+....    +.....++.+|+.+.    ++.+  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence            455789999999999999887762 2235789999999998888765431    111223455666432    1110  1


Q ss_pred             cCCccEEEecCC
Q 011347          429 LGSIDFVICQNS  440 (488)
Q Consensus       429 ~g~~DLVIGGpP  440 (488)
                      .+.||+|+.-++
T Consensus       192 ~~~fDlIi~d~~  203 (334)
T 1xj5_A          192 EGSYDAVIVDSS  203 (334)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCccEEEECCC
Confidence            257999997543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=89.48  E-value=0.31  Score=44.24  Aligned_cols=70  Identities=26%  Similarity=0.310  Sum_probs=47.3

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhh
Q 011347          347 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  426 (488)
Q Consensus       347 vLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~  426 (488)
                      .+....| +.+|||+-||.|.+...+...       +++|+++...+..+..       +..+...|+.++..       
T Consensus        41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-------   98 (219)
T 1vlm_A           41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL-------   98 (219)
T ss_dssp             HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred             HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence            3444445 779999999999998877554       6899999987776542       22345667765531       


Q ss_pred             hccCCccEEEecC
Q 011347          427 HKLGSIDFVICQN  439 (488)
Q Consensus       427 ~~~g~~DLVIGGp  439 (488)
                       ..+.+|+|+...
T Consensus        99 -~~~~fD~v~~~~  110 (219)
T 1vlm_A           99 -KDESFDFALMVT  110 (219)
T ss_dssp             -CTTCEEEEEEES
T ss_pred             -CCCCeeEEEEcc
Confidence             114688887653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=89.44  E-value=0.26  Score=46.19  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=49.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+=||.|.+...|.+.|.+   |+++|+++......+.      .....++.+|+.++..        ..+.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f   95 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV   95 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence            45689999999999999999988864   6899999975433221      1123355677766542        11579


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |+|+.....
T Consensus        96 D~v~~~~~l  104 (261)
T 3ege_A           96 DGVISILAI  104 (261)
T ss_dssp             SEEEEESCG
T ss_pred             eEEEEcchH
Confidence            999876543

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=89.41  E-value=0.31  Score=40.28  Aligned_cols=39  Identities=28%  Similarity=0.329  Sum_probs=32.4

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||+++.|..|+-..|.. .++.-++.+|...
T Consensus        31 ~~v~~L~~MGF~~~~a~~AL~~t~n~-n~e~A~ewL~~h~   69 (84)
T 1vek_A           31 EIVAQLVSMGFSQLHCQKAAINTSNA-GVEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            35679999999999999999988743 5777789998865

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=89.36  E-value=0.3  Score=42.28  Aligned_cols=38  Identities=16%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             hhhhhHHhc-CCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~m-gf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++..|++| ||+++||..|+..|+-|  +.+-++.++.+.
T Consensus        41 ekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~   79 (104)
T 1wj7_A           41 EKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN   79 (104)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            578899999 99999999999999987  556677887665

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=89.34  E-value=0.8  Score=45.82  Aligned_cols=72  Identities=17%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             CCCCcccccCCCCChhH-HHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGls-lGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.+.+|||+=||.||++ +-+.+ .|.+   |+++|+++...+.-+.+....+.....++.+|..++.          .+
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~---V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~  187 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMR---VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL  187 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCE---EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCE---EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence            46789999999999876 33333 4653   7899999998888777654433322335667877653          15


Q ss_pred             CccEEEe
Q 011347          431 SIDFVIC  437 (488)
Q Consensus       431 ~~DLVIG  437 (488)
                      .||+|+-
T Consensus       188 ~FDvV~~  194 (298)
T 3fpf_A          188 EFDVLMV  194 (298)
T ss_dssp             CCSEEEE
T ss_pred             CcCEEEE
Confidence            7999973

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=89.26  E-value=0.34  Score=46.19  Aligned_cols=49  Identities=8%  Similarity=-0.048  Sum_probs=40.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  402 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~  402 (488)
                      +..-+||||=||.|.+++.+..+.=.. .++++|+|+.+.++.+.+....
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~   96 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL   96 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence            557899999999999999998774333 5899999999999999876543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=89.11  E-value=0.3  Score=49.20  Aligned_cols=77  Identities=14%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChhHHHHHH--cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~--aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      +.++||+|=||.|++...+.+  -+.+   +.+||||+...+..+.|+.........++.+|..+.-    ..+  .-+.
T Consensus        89 ~~~rVLdIG~G~G~la~~la~~~p~~~---v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~  159 (317)
T 3gjy_A           89 SKLRITHLGGGACTMARYFADVYPQSR---NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPAS  159 (317)
T ss_dssp             GGCEEEEESCGGGHHHHHHHHHSTTCE---EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTC
T ss_pred             CCCEEEEEECCcCHHHHHHHHHCCCcE---EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCC
Confidence            346999999999999988877  2543   5789999999998888764221222335567765431    110  1257


Q ss_pred             ccEEEecC
Q 011347          432 IDFVICQN  439 (488)
Q Consensus       432 ~DLVIGGp  439 (488)
                      ||+|+...
T Consensus       160 fDvIi~D~  167 (317)
T 3gjy_A          160 RDVIIRDV  167 (317)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            99999754

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=88.98  E-value=0.24  Score=37.92  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCch
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPI   30 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~   30 (488)
                      +++.+|+.|||+.++|-.|+.....+..+
T Consensus        13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~   41 (52)
T 2ooa_A           13 AKIAKLMGEGYAFEEVKRALEIAQNNVEV   41 (52)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCHHH
Confidence            46789999999999999999999887543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=88.76  E-value=0.21  Score=47.15  Aligned_cols=83  Identities=13%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhc-
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  428 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~-  428 (488)
                      .+-+|||+-||.|..++.|-++   |.   .|+++|+++...+..+.++...+... ..++.+|..++-    ..+... 
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~  132 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDG---QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEG  132 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTC---EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHH
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhcc
Confidence            3468999999999999988774   32   37899999987766666665443321 224556665432    211111 


Q ss_pred             -cCCccEEEecCCCCC
Q 011347          429 -LGSIDFVICQNSVPQ  443 (488)
Q Consensus       429 -~g~~DLVIGGpPCQ~  443 (488)
                       .+.||+|+-..++..
T Consensus       133 ~~~~fD~V~~d~~~~~  148 (242)
T 3r3h_A          133 GEHQFDFIFIDADKTN  148 (242)
T ss_dssp             CSSCEEEEEEESCGGG
T ss_pred             CCCCEeEEEEcCChHH
Confidence             368999987766443

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=88.41  E-value=0.36  Score=42.05  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=33.6

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      ++...|++|||+++.+..|+-.||.. .+++-++.|+.-+
T Consensus         5 ~~l~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~wL~~~~   43 (126)
T 2lbc_A            5 SSVMQLAEMGFPLEACRKAVYFTGNM-GAEVAFNWIIVHM   43 (126)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHTSC-CHHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHHhc
Confidence            35678999999999999999999873 6888889998766

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=88.11  E-value=0.32  Score=46.95  Aligned_cols=73  Identities=8%  Similarity=-0.030  Sum_probs=48.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc----CCCCCcceeccccccChhhHHHhhhc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~----n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      +++.+||++-||.|++...+.+.|   .-+.+||+|+...+..+.++...    ..+...++.+|..+.-          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            456789999999999998777665   35789999999877666544210    0111223445554321          


Q ss_pred             cCCccEEEecC
Q 011347          429 LGSIDFVICQN  439 (488)
Q Consensus       429 ~g~~DLVIGGp  439 (488)
                       +.+|+|+...
T Consensus       138 -~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -KKYDLIFCLQ  147 (262)
T ss_dssp             -CCEEEEEESS
T ss_pred             -hhCCEEEECC
Confidence             4689998764

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=87.84  E-value=1.4  Score=42.27  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ...|.+||||-||.|.+..-+.+. |=.- .|+++|+++...+.++..-..  .++...+..|..+.....     ...+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G-~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~~~-----~~~~  146 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRG-RIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEKYR-----HLVE  146 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTC-EEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGGGT-----TTCC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCccccc-----cccc
Confidence            356899999999999999888753 5332 478999999988777653221  223334556666543211     1235


Q ss_pred             CccEEEecCCC
Q 011347          431 SIDFVICQNSV  441 (488)
Q Consensus       431 ~~DLVIGGpPC  441 (488)
                      .+|+|+.-.+.
T Consensus       147 ~vDvVf~d~~~  157 (233)
T 4df3_A          147 GVDGLYADVAQ  157 (233)
T ss_dssp             CEEEEEECCCC
T ss_pred             eEEEEEEeccC
Confidence            79998855443

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=87.76  E-value=0.43  Score=36.97  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=27.6

Q ss_pred             hhhhhHHhcCCCHH-HHHHHHHHhCCCCchhhhhhhhhhc
Q 011347            2 EITLQLLEMGFSEN-QVSLAIEKFGSKTPISELADKIFSG   40 (488)
Q Consensus         2 ~k~~~l~~mgf~~~-e~~~ai~~~g~~~~~~~l~d~i~a~   40 (488)
                      +++..|.+|||+++ .+..|+..++-|  ++.-+|.++..
T Consensus        19 ~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~   56 (58)
T 1wr1_B           19 HQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG   56 (58)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            36789999999755 558999999865  55557777653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=87.72  E-value=0.66  Score=53.01  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=44.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhc------CCCCCcceeccccccC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------GQTGELVQIEDIQALT  418 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~------n~~g~lv~~~DI~~L~  418 (488)
                      .+.+||||-||.|.+...|.+.|-+..-|+++|+++.+.+..+......      +.....++.+|+.++.
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp  791 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD  791 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence            5679999999999999999988722234789999999887776532211      1112234567776654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=87.51  E-value=0.59  Score=43.63  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+|||+=||.|.....+.+.+.  .-+++||+++...+..+.+....+ ....++.+|...+... +     .-+.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~-~-----~~~~F  129 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-L-----PDGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-S-----CTTCE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc-c-----cccCC
Confidence            5788999999999999888877653  457899999998888776543322 1222344555433211 0     12568


Q ss_pred             cEEEe
Q 011347          433 DFVIC  437 (488)
Q Consensus       433 DLVIG  437 (488)
                      |.|+.
T Consensus       130 D~i~~  134 (236)
T 3orh_A          130 DGILY  134 (236)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            98864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=87.18  E-value=0.58  Score=46.96  Aligned_cols=80  Identities=21%  Similarity=0.264  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCcceeccccccChh---h
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTK---K  421 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~--------n~~g~lv~~~DI~~L~~~---~  421 (488)
                      .+.+||||-||.|.+...|.+. |-. ..|+++|+++.+....+.+....        ......++.+|+.++...   .
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            5679999999999998888664 211 14789999999888776543211        012333566888776321   1


Q ss_pred             HHHhhhccCCccEEEecC
Q 011347          422 FESLIHKLGSIDFVICQN  439 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGp  439 (488)
                      +     .-+.||+|+...
T Consensus       162 ~-----~~~~fD~V~~~~  174 (383)
T 4fsd_A          162 V-----PDSSVDIVISNC  174 (383)
T ss_dssp             C-----CTTCEEEEEEES
T ss_pred             C-----CCCCEEEEEEcc
Confidence            1     125799999754

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=87.15  E-value=0.62  Score=49.65  Aligned_cols=84  Identities=13%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             CCCcccccCCCCChhHHHHHH-c---CC--------eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHR-L---GI--------KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK  421 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~-a---Gi--------~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~  421 (488)
                      .+-+|+|-.||.|||-++..+ +   +-        .-..++++|+++.+.++.+.+..-++.....+..+|--.....+
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~  296 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE  296 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence            346899999999999776532 1   10        01247899999998887765433222222223444432111110


Q ss_pred             HHHhhhccCCccEEEecCCC
Q 011347          422 FESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGpPC  441 (488)
                          ......||+|+|=||=
T Consensus       297 ----~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          297 ----MGDKDRVDVILTNPPF  312 (530)
T ss_dssp             ----CCGGGCBSEEEECCCS
T ss_pred             ----hcccccceEEEecCCC
Confidence                0112479999999984

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=87.09  E-value=0.48  Score=41.30  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      ++.+|++|||+++++..|+..+|.+  ++.-++.++...
T Consensus        81 ~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~~  117 (126)
T 2lbc_A           81 IVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSHP  117 (126)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            4678999999999999999999864  666778887543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=87.09  E-value=1  Score=43.12  Aligned_cols=80  Identities=13%  Similarity=0.092  Sum_probs=47.4

Q ss_pred             CCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+||||-||.|+++.-+.. .|=. -.|+++|+++...+.+...-..  .++..++.+|+++....  ..   ..+.
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~~---~~~~  146 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--KS---VVEN  146 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--TT---TCCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--hc---cccc
Confidence            4578999999999998877754 3322 1478999999764323211111  12333566888754321  00   1257


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      ||+|+-..+
T Consensus       147 ~D~I~~d~a  155 (232)
T 3id6_C          147 VDVLYVDIA  155 (232)
T ss_dssp             EEEEEECCC
T ss_pred             eEEEEecCC
Confidence            898875543

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=85.09  E-value=0.48  Score=36.42  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=24.1

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKT   28 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~   28 (488)
                      +++.+|+.|||+.++|-.|+..+..+.
T Consensus        11 ~~I~~L~~lGF~r~~ai~AL~~a~nnv   37 (53)
T 2d9s_A           11 SEIERLMSQGYSYQDIQKALVIAHNNI   37 (53)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCCH
Confidence            357899999999999999999998874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=85.09  E-value=0.91  Score=40.72  Aligned_cols=74  Identities=12%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             cccCcchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceecccc
Q 011347          336 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ  415 (488)
Q Consensus       336 fqvdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~  415 (488)
                      |....+...+..|... +.+.+|||+-||.|.+...+   +.   .++++|+++..               ..+..+|+.
T Consensus        50 ~~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l---~~---~v~~~D~s~~~---------------~~~~~~d~~  107 (215)
T 2zfu_A           50 WPLQPVDRIARDLRQR-PASLVVADFGCGDCRLASSI---RN---PVHCFDLASLD---------------PRVTVCDMA  107 (215)
T ss_dssp             SSSCHHHHHHHHHHTS-CTTSCEEEETCTTCHHHHHC---CS---CEEEEESSCSS---------------TTEEESCTT
T ss_pred             cchhHHHHHHHHHhcc-CCCCeEEEECCcCCHHHHHh---hc---cEEEEeCCCCC---------------ceEEEeccc
Confidence            3333333344444432 45678999999999987766   33   36789998861               124567777


Q ss_pred             ccChhhHHHhhhccCCccEEEecC
Q 011347          416 ALTTKKFESLIHKLGSIDFVICQN  439 (488)
Q Consensus       416 ~L~~~~Ie~l~~~~g~~DLVIGGp  439 (488)
                      ++..        ..+.||+|+...
T Consensus       108 ~~~~--------~~~~fD~v~~~~  123 (215)
T 2zfu_A          108 QVPL--------EDESVDVAVFCL  123 (215)
T ss_dssp             SCSC--------CTTCEEEEEEES
T ss_pred             cCCC--------CCCCEeEEEEeh
Confidence            6531        124699999644

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=84.59  E-value=1.6  Score=41.92  Aligned_cols=79  Identities=10%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a--Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      ..+.+|||+-||.|.+...+.+.  +.   -++++|++ ...+..+......+..+ ..+..+|+.+...         .
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~  230 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---------G  230 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---------C
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---------C
Confidence            56789999999999999988876  54   36789999 66666655443222111 2245566654321         1


Q ss_pred             CCccEEEecCCCCCc
Q 011347          430 GSIDFVICQNSVPQI  444 (488)
Q Consensus       430 g~~DLVIGGpPCQ~F  444 (488)
                      +++|+|+....-..+
T Consensus       231 ~~~D~v~~~~~l~~~  245 (335)
T 2r3s_A          231 NDYDLVLLPNFLHHF  245 (335)
T ss_dssp             SCEEEEEEESCGGGS
T ss_pred             CCCcEEEEcchhccC
Confidence            248888876655444

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=84.46  E-value=2.6  Score=44.03  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL  395 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~  395 (488)
                      ..+.+||||-||.|.+.+.+.+. |.  ..|++||+++.+....
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A  282 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT  282 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence            35678999999999999888774 53  2478999999986655

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=84.12  E-value=1.8  Score=39.86  Aligned_cols=78  Identities=12%  Similarity=0.046  Sum_probs=46.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+.+||||=||.|..+.-|.+.+=. ..|+++|+++.+.+.+...-...  .+...+.+|+.+...  .   ....+.|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~--~---~~~~~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK--Y---SGIVEKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG--T---TTTCCCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchh--h---cccccce
Confidence            45679999999999998877654202 24789999997644332211111  122234567765321  0   0012579


Q ss_pred             cEEEec
Q 011347          433 DFVICQ  438 (488)
Q Consensus       433 DLVIGG  438 (488)
                      |+|+..
T Consensus       128 D~V~~~  133 (210)
T 1nt2_A          128 DLIYQD  133 (210)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            999865

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=83.76  E-value=1.3  Score=41.24  Aligned_cols=83  Identities=14%  Similarity=0.023  Sum_probs=48.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHH------HHHHHHHHhhhcCC-CCCcceecc-ccccChhhHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET------NRRILKRWWESSGQ-TGELVQIED-IQALTTKKFE  423 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~------a~~t~~~~~~~~n~-~g~lv~~~D-I~~L~~~~Ie  423 (488)
                      +.+.+|||+-||.|.+...+.+. |-.. .|+++|+++.      .....+......+. ....+...| +...   .+.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~-~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~  117 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSG-HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGP  117 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTC-EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCC-EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCC
Confidence            35679999999999999888776 4222 3788999985      44454444332211 112234455 2211   111


Q ss_pred             HhhhccCCccEEEecCCCC
Q 011347          424 SLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       424 ~l~~~~g~~DLVIGGpPCQ  442 (488)
                         -..+.||+|+......
T Consensus       118 ---~~~~~fD~v~~~~~l~  133 (275)
T 3bkx_A          118 ---IADQHFDRVVLAHSLW  133 (275)
T ss_dssp             ---GTTCCCSEEEEESCGG
T ss_pred             ---CCCCCEEEEEEccchh
Confidence               0125799998765443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=83.48  E-value=0.47  Score=45.95  Aligned_cols=35  Identities=11%  Similarity=0.011  Sum_probs=29.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHH
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET  390 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~  390 (488)
                      ++.+.+||||=||.||++..+.+.|    .|++||+++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m  106 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTL  106 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchh
Confidence            4567899999999999998887773    3789999884

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.36  E-value=1  Score=44.66  Aligned_cols=44  Identities=16%  Similarity=0.106  Sum_probs=36.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      ..+-.|||.|||.|...++..++|-+   .+++|+++....+.+..+
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~  294 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF  294 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHH
Confidence            35567999999999999999999964   578999999888776533

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=83.24  E-value=1.3  Score=35.88  Aligned_cols=38  Identities=13%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             hhhhhHHhcCCC-HHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~-~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++..|++|||+ ++.+..|+..++-|  ++.-+|.+|...
T Consensus        31 ~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~   69 (74)
T 1vej_A           31 QELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS   69 (74)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence            467899999996 56668999998865  666688888764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=82.91  E-value=4.3  Score=39.72  Aligned_cols=81  Identities=16%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +..+.+|||+-||.|.+...+.+.+-.. .++++|+ +...+..+......+.. ...++.+|+.+-    ++      .
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~  247 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----LP------V  247 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------C
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----CC------C
Confidence            3456899999999999999988774222 3578999 88777776655433222 223455666431    11      2


Q ss_pred             CccEEEecCCCCCc
Q 011347          431 SIDFVICQNSVPQI  444 (488)
Q Consensus       431 ~~DLVIGGpPCQ~F  444 (488)
                      ++|+|+.......+
T Consensus       248 ~~D~v~~~~vl~~~  261 (374)
T 1qzz_A          248 TADVVLLSFVLLNW  261 (374)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CCCEEEEeccccCC
Confidence            48988876544333

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=82.72  E-value=0.75  Score=45.69  Aligned_cols=38  Identities=13%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR  392 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~  392 (488)
                      +.+.+|||+=||.|+++..|.+.|.  .-|++||+++...
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL  121 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQL  121 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCS
T ss_pred             ccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHH
Confidence            3567899999999999998888885  3488999998643

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=82.21  E-value=1  Score=34.82  Aligned_cols=29  Identities=14%  Similarity=0.183  Sum_probs=25.1

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCch
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPI   30 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~   30 (488)
                      +++-.|++|||+.+.|..|+.-...|..+
T Consensus         9 ~~Ia~L~smGfsr~da~~AL~ia~Ndv~~   37 (56)
T 2juj_A            9 SEIENLMSQGYSYQDIQKALVIAQNNIEM   37 (56)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTTTCSHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcccHHH
Confidence            35678999999999999999999888654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=81.67  E-value=0.35  Score=47.18  Aligned_cols=35  Identities=11%  Similarity=-0.041  Sum_probs=29.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHH
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET  390 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~  390 (488)
                      +..+.+||||=||.||++..+-+.|    -|++||+++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m  114 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTL  114 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchh
Confidence            4467899999999999998887774    3789999884

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=81.02  E-value=1.4  Score=38.60  Aligned_cols=36  Identities=11%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhc
Q 011347            3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG   40 (488)
Q Consensus         3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~   40 (488)
                      ++-.|.+|||++++|..|+-+++.|  ++--+|.+++.
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~  114 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMAR  114 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHh
Confidence            3678999999999999999999986  44445666554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=80.22  E-value=4.8  Score=39.25  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccCC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ..+.+|||+-||.|.+...+.+.+-.+ .++++|+ +...+..+......+.. ...++.+|+.+-    ++      .+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~~  249 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----LP------RK  249 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------SC
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----CC------CC
Confidence            456799999999999999998876444 3567898 76666666554433221 222455666431    11      24


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|+......
T Consensus       250 ~D~v~~~~vl~  260 (360)
T 1tw3_A          250 ADAIILSFVLL  260 (360)
T ss_dssp             EEEEEEESCGG
T ss_pred             ccEEEEccccc
Confidence            88888655443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=80.08  E-value=4.3  Score=39.82  Aligned_cols=72  Identities=17%  Similarity=0.084  Sum_probs=45.3

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccceecccccc
Q 011347          342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL  417 (488)
Q Consensus       342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L  417 (488)
                      ...+..+.  +..+.+|||+-||.|.+...+.+..=.. -++++|+ +...+..+......+..+ ..++.+|+.+.
T Consensus       180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  252 (359)
T 1x19_A          180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE  252 (359)
T ss_dssp             HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred             HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence            34444432  4567899999999999999988763222 2578999 877777666554332222 22445666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	7e-05

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 415
           L +L ++SG+GG    L    I  + V +I+ +     + K  +  +      +  + I+
Sbjct: 3   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIE 57

Query: 416 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 449
            +T ++F+       S D ++            +
Sbjct: 58  GITLEEFDR-----LSFDMILMSPPCQPFTRIGR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.93
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.93
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.17
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.0
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.19
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.12
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.09
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.01
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.01
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.91
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.89
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.83
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.81
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.72
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.65
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.54
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.17
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.89
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.76
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.49
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.45
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.36
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.32
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.13
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.09
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.03
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.02
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.02
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	95.8
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.8
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	95.74
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	95.56
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	95.56
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	95.53
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.45
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	95.43
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	95.4
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.29
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.29
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.2
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.06
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	94.79
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	94.79
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	94.68
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	94.64
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	94.47
d2h00a1	250	Methyltransferase 10 domain containing protein MET	94.4
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	93.97
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.96
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	93.89
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	93.87
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	93.84
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	93.67
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.35
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	92.99
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	92.88
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	92.55
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	92.3
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	91.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	91.02
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	90.78
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	90.58
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	90.51
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	90.46
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	90.05
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	89.9
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	89.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	89.21
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	88.74
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	88.52
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	88.26
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	87.91
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	87.46
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	85.94
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	85.54
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	85.51
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	85.25
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	84.89
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	84.87
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	83.84
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	83.45
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	82.55
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	82.39

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.93  E-value=1.7e-26  Score=220.71  Aligned_cols=105  Identities=17%  Similarity=0.351  Sum_probs=92.1

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  435 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV  435 (488)
                      |+||||||||||+++||++|||  ++++++|+|+.|+++|+.+|     +. .+..+||++++.+++       +++|||
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~--~~~~a~e~d~~a~~~~~~N~-----~~-~~~~~Di~~~~~~~~-------~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSDEF-------PKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC--EEEEEEECCHHHHHHHHHHC-----CS-EEEESCTTTSCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHC-----CC-CCccCChhhCCHhHc-------ccccEE
Confidence            6899999999999999999998  46899999999999998754     22 356799999988765       579999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          436 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       436 IGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                      +||||||+||.+|+            +.|.+|+|+.||++|+|+|+.+||..
T Consensus        66 ~~g~PCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~Pk~  105 (324)
T d1dcta_          66 IGGPPCQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF  105 (324)
T ss_dssp             EECCCCTTTSSSSC------------CCCSSSHHHHHHHHHHHHHHHHCCSE
T ss_pred             eecccccccccccc------------cccccccccchHHHHHHHHHhhCCce
Confidence            99999999998864            35688999999999999999999864

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.93  E-value=3.1e-26  Score=221.94  Aligned_cols=111  Identities=19%  Similarity=0.302  Sum_probs=96.4

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhc
Q 011347          349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  428 (488)
Q Consensus       349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~  428 (488)
                      ++....+|+||||||||||+++||+++||+  +++++|+|+.|+++|+.+|..+       ..+||++++.+++      
T Consensus         5 ~~~~~~~lrv~~lFsG~Gg~~~gl~~aG~~--~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~------   69 (327)
T d2c7pa1           5 KDKQLTGLRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI------   69 (327)
T ss_dssp             SSCTTTTCEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS------
T ss_pred             ccccCCCCeEEEECccccHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhc------
Confidence            555668899999999999999999999984  6899999999999999877432       2589999987655      


Q ss_pred             cCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 011347          429 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  487 (488)
Q Consensus       429 ~g~~DLVIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~vr~~~  487 (488)
                       .++|||+||||||+||.+|+            +.|.+|+|+.||++|+|+|+++||..
T Consensus        70 -~~~Dll~ggpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~kP~~  115 (327)
T d2c7pa1          70 -PDHDILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             -CCCSEEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             -ceeeeeecccccchhhhhhh------------hcCCcccchhHHHHHHHHHhccCCcE
Confidence             57999999999999999875            25678999999999999999999864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-26  Score=220.07  Aligned_cols=110  Identities=16%  Similarity=0.318  Sum_probs=81.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      +|+||||||||||+++||+++||++++++++|+|+.|+++|+.+|     ++..++.+||++++.+++..     +++||
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~-----~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCC-----CCccE
Confidence            489999999999999999999999899999999999999998754     34446779999999887753     47999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHh--hcc
Q 011347          435 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRV--RSM  486 (488)
Q Consensus       435 VIGGpPCQ~FS~ank~~r~G~~~m~g~r~Gl~D~Rs~LF~EfvRIV~~v--r~~  486 (488)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|+++  ||.
T Consensus        72 l~ggpPCq~fS~ag~------------~~~~~d~r~~l~~~~~~~i~~~~~kPk  113 (343)
T d1g55a_          72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEeeccccccccccc------------ccccccccccccchhhhhHhhhcCCCc
Confidence            999999999998864            3578999999999999999988  565

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.17  E-value=5.7e-12  Score=120.85  Aligned_cols=180  Identities=14%  Similarity=0.152  Sum_probs=106.4

Q ss_pred             cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeecccc-Cccccccccc----ccCCCCCCCCCCCC-CC
Q 011347          158 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPE-PP  223 (488)
Q Consensus       158 ~~~ppfF~fENV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-sAa~R~RgY~----hNLP~~nR~~~~p~-~p  223 (488)
                      ..+|.||++|||..+-..    .+..|...|    |.++..++||..| .||+|+|.|+    +++...+.....|. ..
T Consensus       110 ~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fivg~r~~~~~~~~~~p~p~~~~  189 (327)
T d2c7pa1         110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELN  189 (327)
T ss_dssp             HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCC
T ss_pred             ccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhhheeeeeccCccccccccccccccc
Confidence            458999999999988543    355555555    7889999999999 8999999987    34544443221222 14


Q ss_pred             CcccccccCCCc-----------------cCCCcCCCcccceeeccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhh
Q 011347          224 MTIQDAIPHTKK-----------------WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRS  286 (488)
Q Consensus       224 ~tiqd~lp~~~~-----------------~wp~wd~r~kl~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c  286 (488)
                      .+|+|++.....                 ++.......+.+++.....+.. ..       ......++.....   ...
T Consensus       190 ~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~t~~~~~---~~~  258 (327)
T d2c7pa1         190 TFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER-IY-------STRGIAITLSAYG---GGI  258 (327)
T ss_dssp             CCGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSCCEEEESTTCCTTCE-EE-------ETTSCBCCCCSSC---CST
T ss_pred             cccccccccccchhhhcccccccccchhhhhcccchhhhhccccCCCCCcc-cc-------ccccccccccccC---ccc
Confidence            678887742211                 1111111111222111100000 00       0000000000000   000


Q ss_pred             cccceeeecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccc
Q 011347          287 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  350 (488)
Q Consensus       287 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~  350 (488)
                      ....-.+..+++.+.|++.|++||+|||++|+.  ..+.+++++.+||++.++++.++...++.
T Consensus       259 ~~~~~~~~~~~~~R~lT~rE~arLqgFPd~f~~--~~s~~~~~~~iGNAVp~~v~~~I~~~I~~  320 (327)
T d2c7pa1         259 FAKTGGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             TTTTCEEEETTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCcCcCCCHHHHHHhCCCCCCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            001112345788999999999999999999987  56899999999999999998888766544

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.00  E-value=3.2e-11  Score=113.97  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             ccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhccccc
Q 011347          296 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  350 (488)
Q Consensus       296 ~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK~  350 (488)
                      ++.++.|||.|+.||+|||++|+.- ..+.+++++.+||+..++++.++++.+++
T Consensus       269 ~~~~R~LT~rE~arLqgFPd~~~f~-~~s~~~~y~~iGNaV~p~v~~~I~~~I~~  322 (324)
T d1dcta_         269 EHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (324)
T ss_dssp             GGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCcCcCCCHHHHHHHCCCCCCCEeC-CCCHHHHHeeEccCccHHHHHHHHHHHHH
Confidence            4567899999999999999999852 35899999999999999998888877764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.2e-11  Score=112.18  Aligned_cols=56  Identities=18%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             ecccccCCCChhhHHHHhcCCCCCccccCCChHHHHHhhhhhcccCcchhhhcccc
Q 011347          294 VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  349 (488)
Q Consensus       294 ~g~~~~~ple~~E~E~i~GfP~~~T~~~~l~~teR~k~Lgnsfqvdti~~~lsvLK  349 (488)
                      ..+.+++-|||.|+.||+|||++|+...++|.++++|.+||+..++++.++++.|.
T Consensus       287 ~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k~l~  342 (343)
T d1g55a_         287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY  342 (343)
T ss_dssp             HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHHHhc
Confidence            45677899999999999999999998889999999999999999999888877653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.19  E-value=1.4e-06  Score=79.49  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||||||+|++++++...|..  .|++||+|+.+.+..+.+....+. ...+...|+.++.           ++||
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~-----------~~fD  111 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  111 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC-----------CcCc
Confidence            4678999999999999988888863  478999999999999887544322 2224455655442           5799


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+.-|||.
T Consensus       112 ~Vi~nPP~~  120 (201)
T d1wy7a1         112 IVIMNPPFG  120 (201)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEcCccc
Confidence            999999984

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=2.2e-06  Score=76.31  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=61.6

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      +.|....+.+-+|||||||.|++.+.+...|.+   +++||+|+.+.+..+.++...+..      ..|...+.+.+...
T Consensus        33 ~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~------~~v~~~~~d~~~~~  103 (171)
T d1ws6a1          33 DYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLG------ARVVALPVEVFLPE  103 (171)
T ss_dssp             HHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCC------CEEECSCHHHHHHH
T ss_pred             HHhhccccCCCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccc------cceeeeehhccccc
Confidence            334445667789999999999999988888964   447999999999999988754321      12444444443222


Q ss_pred             h-hccCCccEEEecCCC
Q 011347          426 I-HKLGSIDFVICQNSV  441 (488)
Q Consensus       426 ~-~~~g~~DLVIGGpPC  441 (488)
                      . .....||+|+--||.
T Consensus       104 ~~~~~~~fD~If~DPPY  120 (171)
T d1ws6a1         104 AKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             HHHTTCCEEEEEECCCT
T ss_pred             ccccCCccceeEEcccc
Confidence            2 234679999999983

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.09  E-value=3.4e-06  Score=73.30  Aligned_cols=87  Identities=15%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhH
Q 011347          344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKF  422 (488)
Q Consensus       344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~I  422 (488)
                      +|+.|.+++ .+-+|||||||+|++++.+-..|..  -|.+||+|+.+.++++.+....+... ..++.+|+.+.    +
T Consensus         5 ~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~----l   77 (152)
T d2esra1           5 IFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----I   77 (152)
T ss_dssp             HHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----H
T ss_pred             HHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhccccccc----c
Confidence            456676655 5778999999999999877677864  57899999999999998876543222 12334554432    1


Q ss_pred             HHhhhccCCccEEEecCC
Q 011347          423 ESLIHKLGSIDFVICQNS  440 (488)
Q Consensus       423 e~l~~~~g~~DLVIGGpP  440 (488)
                      +   ...+.+|+|+--||
T Consensus        78 ~---~~~~~fDiIf~DPP   92 (152)
T d2esra1          78 D---CLTGRFDLVFLDPP   92 (152)
T ss_dssp             H---HBCSCEEEEEECCS
T ss_pred             c---ccccccceeEechh
Confidence            1   12368999999998

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.01  E-value=4.3e-06  Score=75.24  Aligned_cols=89  Identities=19%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHH
Q 011347          345 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE  423 (488)
Q Consensus       345 lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie  423 (488)
                      |+.|..++ .+-+|||||||.|++.+..-.-|..  -|+.||+|+.+.++++.+....+... ..++..|+.+.    ++
T Consensus        33 Fn~l~~~~-~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~----l~  105 (182)
T d2fhpa1          33 FNMIGPYF-DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA----LE  105 (182)
T ss_dssp             HHHHCSCC-SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HH
T ss_pred             HHHHHHhc-CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh----hh
Confidence            33344433 4678999999999999977777864  47899999999999998776443221 12344555432    23


Q ss_pred             HhhhccCCccEEEecCC
Q 011347          424 SLIHKLGSIDFVICQNS  440 (488)
Q Consensus       424 ~l~~~~g~~DLVIGGpP  440 (488)
                      .+......||+|+--||
T Consensus       106 ~~~~~~~~fDlIflDPP  122 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPP  122 (182)
T ss_dssp             HHHHTTCCEEEEEECCC
T ss_pred             hhcccCCCcceEEechh
Confidence            33333458999999999

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.01  E-value=3.7e-06  Score=77.33  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .|-+||||+||.|.+++++..+|..  .|++||+|+.+.++.+.+..     ...+..+|+.++.           +.||
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----------~~fD  109 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  109 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----------Ccce
Confidence            4678999999999999999999964  58899999999988876432     2336778887654           4799


Q ss_pred             EEEecCC
Q 011347          434 FVICQNS  440 (488)
Q Consensus       434 LVIGGpP  440 (488)
                      +|+.-||
T Consensus       110 ~Vi~NPP  116 (197)
T d1ne2a_         110 TWIMNPP  116 (197)
T ss_dssp             EEEECCC
T ss_pred             EEEeCcc
Confidence            9999888

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=6.7e-06  Score=73.70  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=55.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||||||.|.+.+.+-..|..  -|++||+|+.+.++++.+....+.....++..|+       +.-+......+|
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~-------~~~l~~~~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA-------MSFLAQKGTPHN  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH-------HHHHSSCCCCEE
T ss_pred             chhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecc-------cccccccccccC
Confidence            4568999999999999877777874  4789999999999999876543222222333333       222222346799


Q ss_pred             EEEecCCC
Q 011347          434 FVICQNSV  441 (488)
Q Consensus       434 LVIGGpPC  441 (488)
                      +|+--||-
T Consensus       114 lIf~DPPY  121 (183)
T d2fpoa1         114 IVFVDPPF  121 (183)
T ss_dssp             EEEECCSS
T ss_pred             EEEEcCcc
Confidence            99999994

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=1.2e-05  Score=78.03  Aligned_cols=85  Identities=20%  Similarity=0.132  Sum_probs=60.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||||||.||+++++.+.|   .-|+++|+++.+.+..+.+...++.....++..|+.++.    +.+....+.||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~----~~~~~~~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL----RRLEKEGERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH----HHHHHTTCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh----hhhHhhhcCCC
Confidence            46799999999999999987644   357899999999999988776443222223445554432    22222346899


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+-=|||...+
T Consensus       218 ~Vi~DpP~~~~~  229 (318)
T d1wxxa2         218 LVVLDPPAFAKG  229 (318)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEEcCCccccc
Confidence            999999997655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=2.5e-05  Score=75.82  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=63.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ...+-+|||+|||.||+++.+-..|-.  -|+++|+++.+....+.++..++... ..++.+|+.+.    +..+.....
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~----~~~~~~~~~  216 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE----MEKLQKKGE  216 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHTTC
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh----hHHHHhccC
Confidence            445789999999999999998888863  48899999999999988876443211 12345665432    222223346


Q ss_pred             CccEEEecCCCCCcc
Q 011347          431 SIDFVICQNSVPQIP  445 (488)
Q Consensus       431 ~~DLVIGGpPCQ~FS  445 (488)
                      .||+|+--|||-.-+
T Consensus       217 ~fD~Vi~DpP~~~~~  231 (324)
T d2as0a2         217 KFDIVVLDPPAFVQH  231 (324)
T ss_dssp             CEEEEEECCCCSCSS
T ss_pred             CCCchhcCCccccCC
Confidence            899999999996544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.81  E-value=1.3e-05  Score=76.14  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ...+-+|||+|||+|++++-+-+.|-  .-|+++|+|+.|.+.++.+-..++..+. .++.+|..++..+         +
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---------~  173 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---------N  173 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---------S
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---------C
Confidence            34678999999999999998777774  2378999999999999887654333332 2456888766432         4


Q ss_pred             CccEEEecCCCCC
Q 011347          431 SIDFVICQNSVPQ  443 (488)
Q Consensus       431 ~~DLVIGGpPCQ~  443 (488)
                      .+|.|+-++|+.+
T Consensus       174 ~~D~Ii~~~p~~~  186 (260)
T d2frna1         174 IADRILMGYVVRT  186 (260)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CCCEEEECCCCch
Confidence            6999999999754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.72  E-value=4e-05  Score=74.58  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||||||.||+++.....|-  +-|++||+++.+.+..+.++..+...  ..-++.+|+.+    .++.+..+...
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~----~l~~~~~~~~~  217 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD----YFKYARRHHLT  217 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH----HHHHHHHTTCC
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH----HHHHHHhhcCC
Confidence            567899999999999998888886  34889999999999999887543221  11234556542    22333334468


Q ss_pred             ccEEEecCCCCC
Q 011347          432 IDFVICQNSVPQ  443 (488)
Q Consensus       432 ~DLVIGGpPCQ~  443 (488)
                      ||+||-=||+=+
T Consensus       218 fD~Ii~DPP~f~  229 (317)
T d2b78a2         218 YDIIIIDPPSFA  229 (317)
T ss_dssp             EEEEEECCCCC-
T ss_pred             CCEEEEcChhhc
Confidence            999999999543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.65  E-value=6.3e-05  Score=73.45  Aligned_cols=82  Identities=16%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||||||.||+++.+-..|-+   |++||+++.+....+.+...++...  .-++.+|+.+.-    .........
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l----~~~~~~~~~  204 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI----QREERRGST  204 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH----HHHHHHTCC
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH----HHHhhcCCC
Confidence            5679999999999999999999963   6789999999999988765432222  224567776442    222233467


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      ||+||-=||+=
T Consensus       205 fD~IilDPP~f  215 (309)
T d2igta1         205 YDIILTDPPKF  215 (309)
T ss_dssp             BSEEEECCCSE
T ss_pred             CCEEEECCCcc
Confidence            99999999963

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.54  E-value=6.2e-05  Score=67.19  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||||||.|.+.+-.-.-|..  -|+.||.|..+.++++.+....+...  ..+...|+.+.-     ......+.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l-----~~~~~~~~  115 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-----KQPQNQPH  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-----TSCCSSCC
T ss_pred             ccceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccc-----cccccCCc
Confidence            4568999999999988777788874  47889999999999999876543211  112223321111     01112357


Q ss_pred             ccEEEecCC
Q 011347          432 IDFVICQNS  440 (488)
Q Consensus       432 ~DLVIGGpP  440 (488)
                      +|||+--||
T Consensus       116 fDlIFlDPP  124 (183)
T d2ifta1         116 FDVVFLDPP  124 (183)
T ss_dssp             EEEEEECCC
T ss_pred             ccEEEechh
Confidence            999999999

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00029  Score=67.83  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+-+|||||||+|.+++.|.+.+   +-|+++|+++.+.+..+.+...++-....++.+|+.+.-...    ......+|
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~----~~~~~~~d  284 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ----PWAKNGFD  284 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS----GGGTTCCS
T ss_pred             CCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh----hhhhccCc
Confidence            45679999999999999998866   457899999999998888765433333334556665433221    11235789


Q ss_pred             EEEecCCC
Q 011347          434 FVICQNSV  441 (488)
Q Consensus       434 LVIGGpPC  441 (488)
                      +||==||=
T Consensus       285 ~vilDPPR  292 (358)
T d1uwva2         285 KVLLDPAR  292 (358)
T ss_dssp             EEEECCCT
T ss_pred             eEEeCCCC
Confidence            99988883

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00029  Score=66.40  Aligned_cols=73  Identities=15%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ...+-+|||+.||.|.+++++.++|.+   |+++|+|+.+.+..+.+...++ -...+..+|+.+.    +     ..+.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~-~~~~~~~~d~~~~----~-----~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNG-VRPRFLEGSLEAA----L-----PFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTT-CCCEEEESCHHHH----G-----GGCC
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcC-CceeEEecccccc----c-----cccc
Confidence            346789999999999999999999964   5799999999999888765432 2223444554321    1     2368


Q ss_pred             ccEEEe
Q 011347          432 IDFVIC  437 (488)
Q Consensus       432 ~DLVIG  437 (488)
                      ||+|+.
T Consensus       185 fD~V~a  190 (254)
T d2nxca1         185 FDLLVA  190 (254)
T ss_dssp             EEEEEE
T ss_pred             cchhhh
Confidence            999985

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.89  E-value=0.0011  Score=58.43  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=53.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC--CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g--~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+-+|||++||.|.+++.+.+.+-+   |.++|+|+.+....+.+....+...  ..+..+|+.+--         ..+.
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~---------~~~~  119 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---------KDRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---------TTSC
T ss_pred             CCCeEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh---------ccCC
Confidence            4578999999999999999887753   6789999999998887664433222  123345554311         1247


Q ss_pred             ccEEEecCCC
Q 011347          432 IDFVICQNSV  441 (488)
Q Consensus       432 ~DLVIGGpPC  441 (488)
                      +|+|+.-+|.
T Consensus       120 fD~Ii~~~p~  129 (194)
T d1dusa_         120 YNKIITNPPI  129 (194)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEEcccE
Confidence            9999987774

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00098  Score=63.56  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=59.6

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          351 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       351 ~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ...++.+||||.||.|.+.+++...--.. .|+++|+++.|.++.+.+-.+.+.....+..+|+.+       .+  ..+
T Consensus       105 ~~~~~~~vlDlGtGSG~I~i~la~~~p~~-~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-------~~--~~~  174 (274)
T d2b3ta1         105 LPEQPCRILDLGTGTGAIALALASERPDC-EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-------AL--AGQ  174 (274)
T ss_dssp             SCSSCCEEEEETCTTSHHHHHHHHHCTTS-EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-------GG--TTC
T ss_pred             hcccccceeeeehhhhHHHHHHHhhCCcc-eeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-------cc--CCC
Confidence            34467889999999999998887654333 478999999999998887654432222344555532       11  114


Q ss_pred             CccEEEecCCCCCcc
Q 011347          431 SIDFVICQNSVPQIP  445 (488)
Q Consensus       431 ~~DLVIGGpPCQ~FS  445 (488)
                      .||+|+.-||.-+.+
T Consensus       175 ~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         175 QFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             CEEEEEECCCCBCTT
T ss_pred             ceeEEEecchhhhhh
Confidence            799999999987654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.49  E-value=0.0035  Score=54.91  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~-lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||++||.|++++.+-+.+-   -|+++|+++.+.+..+.+....+.... .++.+|..++        ......+
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--------~~~~~~~  101 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--------LCKIPDI  101 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--------HTTSCCE
T ss_pred             CCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--------ccccCCc
Confidence            567899999999999999877653   368999999999999887665433222 2344554322        2234689


Q ss_pred             cEEEecC
Q 011347          433 DFVICQN  439 (488)
Q Consensus       433 DLVIGGp  439 (488)
                      |+|+.+.
T Consensus       102 D~v~~~~  108 (186)
T d1l3ia_         102 DIAVVGG  108 (186)
T ss_dssp             EEEEESC
T ss_pred             CEEEEeC
Confidence            9887543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.45  E-value=0.0027  Score=59.13  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ++-+|||+-||.|.++..|.+.|++   |++||+++...+..+........ .......++.+++...+.......+.||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~---v~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRK-EPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTT-SHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCe---eeeccCchHHHHHHHHHHHhccc-ccccceeeeeeccccccccccCCCCCce
Confidence            4568999999999999999999975   67899999988776655433221 1112233444444333322111235789


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+.
T Consensus       132 ~v~~  135 (292)
T d1xvaa_         132 AVIC  135 (292)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.36  E-value=0.0026  Score=60.31  Aligned_cols=80  Identities=14%  Similarity=-0.001  Sum_probs=51.9

Q ss_pred             CCCcccccCCCCChhHHHHH----HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLH----RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~----~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+|+|.+||.||+.+++.    ..+..-..++++|+|+.+.+..+.+........ .+..+|.....         ..
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~---------~~  186 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDGLANL---------LV  186 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCTTSCC---------CC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh-hhhcccccccc---------cc
Confidence            46889999999999988764    233333357899999998887766543322211 12233322111         23


Q ss_pred             CCccEEEecCCCCC
Q 011347          430 GSIDFVICQNSVPQ  443 (488)
Q Consensus       430 g~~DLVIGGpPCQ~  443 (488)
                      +.+|+|+|=||...
T Consensus       187 ~~fD~vi~NPPy~~  200 (328)
T d2f8la1         187 DPVDVVISDLPVGY  200 (328)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             ccccccccCCCCCC
Confidence            57999999999743

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.32  E-value=0.0041  Score=55.44  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ++.-+|||+=||.|..+..|.++|.+   |.+||+++...+..+......+. ...+..+|+.++...         +.|
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~---v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~---------~~f  106 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---------NEF  106 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---------SCE
T ss_pred             CCCCEEEEeCCCCCccchhhcccceE---EEEEeeccccccccccccccccc-cchheehhhhhcccc---------ccc
Confidence            34457999999999999999999975   67899999988887775443322 233677899887632         469


Q ss_pred             cEEEe
Q 011347          433 DFVIC  437 (488)
Q Consensus       433 DLVIG  437 (488)
                      |+|+.
T Consensus       107 D~I~~  111 (251)
T d1wzna1         107 DAVTM  111 (251)
T ss_dssp             EEEEE
T ss_pred             chHhh
Confidence            98875

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.13  E-value=0.0027  Score=49.60  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhccccC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL   44 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~~~   44 (488)
                      +.+.+|++|||+++++..|+..|+-+  |+.-+|.++..+...
T Consensus        31 e~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Ll~~~~ps   71 (73)
T d1vg5a_          31 EQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSGPS   71 (73)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSCSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhCCC--HHHHHHHHHhCCCCC
Confidence            35689999999999999999999986  888999999887543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.09  E-value=0.0048  Score=55.47  Aligned_cols=79  Identities=15%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      ..++..-+.+-+|||+=||.|.++..|.++|.+   ++++|+++...+..+......+ ....++.+|+.++..      
T Consensus        29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~---v~GvD~S~~ml~~A~~~~~~~~-~~v~~~~~d~~~~~~------   98 (246)
T d1y8ca_          29 EKCVENNLVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNI------   98 (246)
T ss_dssp             HHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTT-CCCEEECCCGGGCCC------
T ss_pred             HHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCc---cEeeccchhhhhhccccccccC-ccceeeccchhhhcc------
Confidence            334444455678999999999999999999985   5799999998777665443322 223366789987752      


Q ss_pred             hhccCCccEEEe
Q 011347          426 IHKLGSIDFVIC  437 (488)
Q Consensus       426 ~~~~g~~DLVIG  437 (488)
                         .+.||+|+.
T Consensus        99 ---~~~fD~i~~  107 (246)
T d1y8ca_          99 ---NRKFDLITC  107 (246)
T ss_dssp             ---SCCEEEEEE
T ss_pred             ---cccccccce
Confidence               247999883

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.03  E-value=0.0067  Score=52.63  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=55.6

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhh
Q 011347          348 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       348 LK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      ++.+.+.+-+|||+=||.|.++..|.+.|.+   |+++|+++...+..+....+.+. ....+..|+.++.-.       
T Consensus        31 ~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~-------   99 (226)
T d1ve3a1          31 LMKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFE-------   99 (226)
T ss_dssp             HHHSCCSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSC-------
T ss_pred             HHHhcCCCCEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhccccc-ccccccccccccccc-------
Confidence            3344466789999999999999999999864   68899999988877654433322 223455677766421       


Q ss_pred             ccCCccEEEec
Q 011347          428 KLGSIDFVICQ  438 (488)
Q Consensus       428 ~~g~~DLVIGG  438 (488)
                       .+.||+|+.-
T Consensus       100 -~~~fD~I~~~  109 (226)
T d1ve3a1         100 -DKTFDYVIFI  109 (226)
T ss_dssp             -TTCEEEEEEE
T ss_pred             -CcCceEEEEe
Confidence             2478988753

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.02  E-value=0.004  Score=56.66  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=53.6

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhh
Q 011347          349 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIH  427 (488)
Q Consensus       349 K~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~  427 (488)
                      +.+.+.+-+||||=||.|+...-+.+.|+.  -|+++|+++.+.+..+..+...+.. ...+..+|+......       
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-------   89 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------   89 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-------
Confidence            344567789999999999999999998874  4789999999987776654332211 222456777543311       


Q ss_pred             ccCCccEEE
Q 011347          428 KLGSIDFVI  436 (488)
Q Consensus       428 ~~g~~DLVI  436 (488)
                      ..+.||+|+
T Consensus        90 ~~~~fD~V~   98 (252)
T d1ri5a_          90 LGKEFDVIS   98 (252)
T ss_dssp             CSSCEEEEE
T ss_pred             ccccceEEE
Confidence            124578876

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0023  Score=48.73  Aligned_cols=40  Identities=25%  Similarity=0.339  Sum_probs=34.3

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcccc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIF   43 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~~~   43 (488)
                      +.+..|++|||+++++..|+.+||.+  ++.-+|.+++....
T Consensus        21 ~~v~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Lls~~~p   60 (63)
T d1wgna_          21 QCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHSGP   60 (63)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCCC
Confidence            35689999999999999999999974  88899999986543

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=95.80  E-value=0.0024  Score=45.18  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             hhhHHhcCCCHHHHHHHHHHhCCC
Q 011347            4 TLQLLEMGFSENQVSLAIEKFGSK   27 (488)
Q Consensus         4 ~~~l~~mgf~~~e~~~ai~~~g~~   27 (488)
                      +..|+.|||+|+||..|++++.-+
T Consensus         8 i~eL~~MGF~e~~A~~AL~k~~wn   31 (43)
T d2g3qa1           8 VEELSGMGFTEEEAHNALEKCNWD   31 (43)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCCC
Confidence            467999999999999999999765

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0062  Score=57.35  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ++-+||||-||.|.+++.+.++|-.  .|+++|.++.+..+.+....+.......++.+|+.++...        ...+|
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~--------~~~~D  104 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKVD  104 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc--------cccce
Confidence            3567999999999999999999963  5899999998876555433222122223456777766521        24799


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+.
T Consensus       105 ~Ivs  108 (311)
T d2fyta1         105 VIIS  108 (311)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=95.74  E-value=0.01  Score=52.08  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+=||.|.++..+.+.|-+   |.++|+++...+..+......+.+...++.+|+.++.-.        .+.|
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~--------~~~f   82 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT--------DERF   82 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC--------TTCE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhCCE---EEEEECCHHHHhhhhhccccccccccccccccccccccc--------cccc
Confidence            35689999999999999999999853   679999998877666544333333344667888776411        1468


Q ss_pred             cEEEe
Q 011347          433 DFVIC  437 (488)
Q Consensus       433 DLVIG  437 (488)
                      |+|+.
T Consensus        83 D~v~~   87 (231)
T d1vl5a_          83 HIVTC   87 (231)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            88874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.56  E-value=0.014  Score=50.77  Aligned_cols=74  Identities=20%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  435 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV  435 (488)
                      -+||||=||.|.....|.+.|++   |++||+++.+.+..+......+-....+...|+.++..+         +.||+|
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------~~fD~I   99 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---------GEYDFI   99 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---------CCEEEE
T ss_pred             CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---------ccccEE
Confidence            38999999999999999999985   578999999988887655433222222344566555432         468888


Q ss_pred             EecCCC
Q 011347          436 ICQNSV  441 (488)
Q Consensus       436 IGGpPC  441 (488)
                      +.....
T Consensus       100 ~~~~~~  105 (198)
T d2i6ga1         100 LSTVVM  105 (198)
T ss_dssp             EEESCG
T ss_pred             EEeeee
Confidence            865543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=95.56  E-value=0.0064  Score=54.28  Aligned_cols=68  Identities=13%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347          343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  418 (488)
Q Consensus       343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~  418 (488)
                      +.++.+..++. +-+|||+=||.|.+...|.+.|.+   |.++|+++.+....+...    ..+..+..+|+.++.
T Consensus        10 ~~~~~~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~----~~~~~~~~~~~~~~~   77 (225)
T d2p7ia1          10 FMVRAFTPFFR-PGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRL----KDGITYIHSRFEDAQ   77 (225)
T ss_dssp             HHHHHHGGGCC-SSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHS----CSCEEEEESCGGGCC
T ss_pred             HHHHHhhhhCC-CCcEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhccc----ccccccccccccccc
Confidence            34445555554 448999999999999999999964   689999999887776532    122334556665543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=95.53  E-value=0.012  Score=52.32  Aligned_cols=78  Identities=13%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+.+|||+=||.|.++..|.+.|.+   |.+||+++...+..+..-...+.....++.+|+.++.-.        .+.|
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~~~---v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~f   83 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP--------DDSF   83 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC--------TTCE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhCCe---EEEEeCChhhhhhhhhhhccccccccccccccccccccc--------cccc
Confidence            35789999999999999999998853   679999998776665543332223344567888776421        2579


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |+|+...-.
T Consensus        84 D~v~~~~~l   92 (234)
T d1xxla_          84 DIITCRYAA   92 (234)
T ss_dssp             EEEEEESCG
T ss_pred             ceeeeecee
Confidence            999875433

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.011  Score=56.08  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ++-+||||-||.|.+++-+.++|..  .|+++|.++.+..+. ..-...+... ..++.+|+.++.-.        ...+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a~-~~~~~~~~~~~i~~i~~~~~~l~~~--------~~~~  106 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAK-ELVELNGFSDKITLLRGKLEDVHLP--------FPKV  106 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHH-HHHHHTTCTTTEEEEESCTTTSCCS--------SSCE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHHH-HHHHHhCccccceEEEeehhhccCc--------ccce
Confidence            3568999999999999999999974  588999998654332 2222222222 22456777766421        1479


Q ss_pred             cEEEec
Q 011347          433 DFVICQ  438 (488)
Q Consensus       433 DLVIGG  438 (488)
                      |+|+.-
T Consensus       107 D~i~se  112 (328)
T d1g6q1_         107 DIIISE  112 (328)
T ss_dssp             EEEEEC
T ss_pred             eEEEEE
Confidence            999863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.0085  Score=52.63  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHh
Q 011347          346 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  425 (488)
Q Consensus       346 svLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l  425 (488)
                      +.++.+.+++.+|||+=||.|.+..-|.+.|.+   |.++|+++...+..+..     . ...++.+|+.++.-      
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~giD~s~~~l~~a~~~-----~-~~~~~~~~~~~l~~------   98 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREK-----G-VKNVVEAKAEDLPF------   98 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHH-----T-CSCEEECCTTSCCS------
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccceE---EEEeecccccccccccc-----c-cccccccccccccc------
Confidence            334556677889999999999999999999974   68899999988877652     1 12255678877642      


Q ss_pred             hhccCCccEEEe
Q 011347          426 IHKLGSIDFVIC  437 (488)
Q Consensus       426 ~~~~g~~DLVIG  437 (488)
                        ..+.||+|+.
T Consensus        99 --~~~~fD~ii~  108 (246)
T d2avna1          99 --PSGAFEAVLA  108 (246)
T ss_dssp             --CTTCEEEEEE
T ss_pred             --ccccccceee
Confidence              1257998874

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.006  Score=44.61  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             hhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhh
Q 011347            4 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS   39 (488)
Q Consensus         4 ~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a   39 (488)
                      +..|++|||+++.+..|+...|. ..++.-+|-|++
T Consensus        16 l~~L~~MGF~~~~a~~AL~~t~n-~~ve~A~~WLl~   50 (51)
T d2cpwa1          16 LDVLLSMGFPRARAQKALASTGG-RSVQTACDWLFS   50 (51)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHTTT-SCHHHHHHHHHS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHCC-CCHHHHHHHHHc
Confidence            56899999999999999999985 468888887764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.29  E-value=0.012  Score=55.83  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=49.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+||||.||.|.+++-+.++|-.  .|+++|.++.+..+.+.. ...+... ..++.+|+.++...        ...+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~-~~n~~~~~v~~~~~~~~~~~~~--------~~~~  101 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIV-KANKLDHVVTIIKGKVEEVELP--------VEKV  101 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHH-HHTTCTTTEEEEESCTTTCCCS--------SSCE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHH-HHhCCccccceEeccHHHcccc--------ccee
Confidence            3467999999999999999999963  478999998765444322 2222222 23456777776531        2579


Q ss_pred             cEEEec
Q 011347          433 DFVICQ  438 (488)
Q Consensus       433 DLVIGG  438 (488)
                      |+|+.-
T Consensus       102 D~ivs~  107 (316)
T d1oria_         102 DIIISE  107 (316)
T ss_dssp             EEEEEC
T ss_pred             EEEeee
Confidence            999854

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0074  Score=53.64  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ..-+||||-||.|.++..|...+.  .-|.+||+++......+......+.....++.+|+.++...        .+.+|
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~--------~~~fD  129 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE--------PDSYD  129 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC--------SSCEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccc--------ccccc
Confidence            456899999999999988755554  34788999999887777654332222223566788776531        24688


Q ss_pred             EEEe
Q 011347          434 FVIC  437 (488)
Q Consensus       434 LVIG  437 (488)
                      +|+.
T Consensus       130 ~I~~  133 (222)
T d2ex4a1         130 VIWI  133 (222)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.20  E-value=0.0092  Score=52.12  Aligned_cols=74  Identities=9%  Similarity=0.025  Sum_probs=48.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      +.+-+|||.+||.|+|..++.+.-..-..+.++|+++.+....         ....+..+|-....         ....+
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~---------~~~~f   79 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE---------PGEAF   79 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC---------CSSCE
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc---------ccccc
Confidence            3567899999999999888865433334588999999863221         11223445433222         23579


Q ss_pred             cEEEecCCCCCc
Q 011347          433 DFVICQNSVPQI  444 (488)
Q Consensus       433 DLVIGGpPCQ~F  444 (488)
                      |++++-||.-..
T Consensus        80 d~ii~npP~~~~   91 (223)
T d2ih2a1          80 DLILGNPPYGIV   91 (223)
T ss_dssp             EEEEECCCCCCB
T ss_pred             ceecccCccccc
Confidence            999999998544

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.06  E-value=0.01  Score=46.12  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +++.+|++|||+++++..|+..+|.  .++.-++.||.-.
T Consensus        31 ~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~Av~~Lls~~   68 (73)
T d1wiva_          31 SSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCC--CHHHHHHHHHcCC
Confidence            3568899999999999999999997  5888899998754

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.012  Score=44.45  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      .+.+|++|||+++.+..|+..++.  .++.-++.|+...
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~~~~--~~e~A~~wL~~~~   48 (63)
T d1wjia_          12 ALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            457899999999999999999986  7999999999876

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.03  Score=52.95  Aligned_cols=89  Identities=10%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .+-+|||++||.||=+..+..+ +=. ..++++|+++.-.+.++.+....+.....+...|-..+....     ..++.|
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~-~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-----~~~~~f  167 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  167 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCC-ceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-----ccccee
Confidence            4678999999999977665433 211 247899999998888888766554444334456666655432     234789


Q ss_pred             cEEEecCCCCCccccC
Q 011347          433 DFVICQNSVPQIPNSK  448 (488)
Q Consensus       433 DLVIGGpPCQ~FS~an  448 (488)
                      |.|+-=+||.+-....
T Consensus       168 D~VL~DaPCSg~G~~~  183 (293)
T d2b9ea1         168 HYILLDPSCSGSGMPS  183 (293)
T ss_dssp             EEEEECCCCCC-----
T ss_pred             eEEeecCcccchhhhc
Confidence            9999999999887643

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0095  Score=41.64  Aligned_cols=25  Identities=16%  Similarity=0.371  Sum_probs=23.0

Q ss_pred             hhhhHHhcCCCHHHHHHHHHHhCCC
Q 011347            3 ITLQLLEMGFSENQVSLAIEKFGSK   27 (488)
Q Consensus         3 k~~~l~~mgf~~~e~~~ai~~~g~~   27 (488)
                      ++.+|++|||++++|..|+.+++-+
T Consensus         7 ~i~~L~~MGF~~~~a~~AL~~~~~N   31 (41)
T d1oqya1           7 MLTEIMSMGYERERVVAALRASYNN   31 (41)
T ss_dssp             HHHHHHTTTCCSHHHHHHHHHSCSS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCC
Confidence            5689999999999999999999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=94.64  E-value=0.044  Score=51.74  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhccCCcc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      ..+++|+.||.|...+++.... +. .|+++|+++.|..+.+.|-.+.+-.... +..+|..+..       ....+.||
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~-~~-~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~-------~~~~~~fD  181 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFS-DA-IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIE  181 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS-SC-EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCC
T ss_pred             ccEEEEeeeeeehhhhhhhhcc-cc-eeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc-------ccccCccc
Confidence            4579999999998887776543 33 4789999999999998876544322221 2334443221       12347899


Q ss_pred             EEEecCCCCCcc
Q 011347          434 FVICQNSVPQIP  445 (488)
Q Consensus       434 LVIGGpPCQ~FS  445 (488)
                      +|+.-||.-+-+
T Consensus       182 lIVsNPPYI~~~  193 (271)
T d1nv8a_         182 MILSNPPYVKSS  193 (271)
T ss_dssp             EEEECCCCBCGG
T ss_pred             EEEEcccccCcc
Confidence            999999998754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=94.47  E-value=0.04  Score=50.46  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=53.1

Q ss_pred             CCCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhcc
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .+.+.+|||+=||.|+++.-|.+ .|.+   |++||+++......+......+... ..++.+|+.++.-.        .
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~--------~  133 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--------D  133 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--------T
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcE---EEEEeccchhhhhhhccccccccccccccccccccccccc--------c
Confidence            45788999999999999988865 4753   6789999998877776655443222 23566787766421        2


Q ss_pred             CCccEEEe
Q 011347          430 GSIDFVIC  437 (488)
Q Consensus       430 g~~DLVIG  437 (488)
                      +.||+|+.
T Consensus       134 ~sfD~V~~  141 (282)
T d2o57a1         134 NSYDFIWS  141 (282)
T ss_dssp             TCEEEEEE
T ss_pred             cccchhhc
Confidence            56888875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.054  Score=50.01  Aligned_cols=87  Identities=13%  Similarity=0.041  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChhHHHHH--HcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-ceeccccccChhhHHHhhhcc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~--~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~l-v~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      ...+++|||-||.|...+.|-  .-+.+   ++++||++.|.+..+.+-...+-.... +...|....--+.+..  ...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~---~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~  134 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWY---FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESE  134 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCS
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCcc---ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--ccc
Confidence            456889999999998776554  44553   689999999999988876544322221 1112221111111100  122


Q ss_pred             CCccEEEecCCCCCc
Q 011347          430 GSIDFVICQNSVPQI  444 (488)
Q Consensus       430 g~~DLVIGGpPCQ~F  444 (488)
                      +.||+|+.=||=-+-
T Consensus       135 ~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         135 IIYDFCMCNPPFFAN  149 (250)
T ss_dssp             CCBSEEEECCCCC--
T ss_pred             CceeEEEecCccccc
Confidence            579999999996543

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.024  Score=42.90  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             hhhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            3 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         3 k~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      .+.+|++|||+++.+..|+-.+|.. .++.-++-|++-.
T Consensus        12 ~l~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~Wl~~h~   49 (64)
T d1whca_          12 ALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLMEHE   49 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHHCC
Confidence            3579999999999999999999874 7999999999866

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.96  E-value=0.058  Score=45.03  Aligned_cols=50  Identities=22%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          344 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       344 ~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      +|+.|.  .+.+-+|||+=||.|-..+-|-+.|++   |+++|+++...+..+..
T Consensus        12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHH
T ss_pred             HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHH
Confidence            355553  357789999999999999999999986   68899999999888763

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.036  Score=49.46  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  397 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~  397 (488)
                      +.+.+|||+=||.|-.++-|.+.|++   |++||+++.+.+..+.
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~---V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHS---VVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCc---EEEEeCCHHHHHHHHH
Confidence            46679999999999999999999986   6899999999876654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.87  E-value=0.054  Score=48.54  Aligned_cols=89  Identities=20%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccCh
Q 011347          341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT  419 (488)
Q Consensus       341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~  419 (488)
                      ++..+..|.  ...+.+|||+=||.|.++..+-+ .|=. -.|+++|+++...+..+......+.....+..+|..+.-.
T Consensus        64 ~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          64 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             hHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence            444555553  34688999999999999988754 4422 2478999999988877776654443344445566654432


Q ss_pred             hhHHHhhhccCCccEEEecCC
Q 011347          420 KKFESLIHKLGSIDFVICQNS  440 (488)
Q Consensus       420 ~~Ie~l~~~~g~~DLVIGGpP  440 (488)
                              ..+.||+|+-+..
T Consensus       141 --------~~~~fD~I~~~~~  153 (213)
T d1dl5a1         141 --------EFSPYDVIFVTVG  153 (213)
T ss_dssp             --------GGCCEEEEEECSB
T ss_pred             --------cccchhhhhhhcc
Confidence                    2257998886543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.051  Score=48.62  Aligned_cols=73  Identities=25%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             CCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCC-CcceeccccccChhhHHHhhhccCC
Q 011347          354 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g-~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      .+.+|||+=||.|++...+.+ .|..   |++||+++......+......+-.+ ..++.+|+.++..+         +.
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~---------~~  100 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---------EK  100 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS---------SC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc---------Cc
Confidence            468899999999999988755 5753   6799999988777766544432222 23566788766432         46


Q ss_pred             ccEEEec
Q 011347          432 IDFVICQ  438 (488)
Q Consensus       432 ~DLVIGG  438 (488)
                      ||+|+..
T Consensus       101 fD~v~~~  107 (245)
T d1nkva_         101 CDVAACV  107 (245)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            7777643

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.032  Score=40.51  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             hhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            4 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         4 ~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +..|++|||+++.+..|+-..|. .+++.-++-|++-+
T Consensus         6 v~~L~~MGF~~~~a~~Al~~t~n-~~ve~A~~Wl~~h~   42 (51)
T d2crna1           6 LEPLLAMGFPVHTALKALAATGR-KTAEEALAWLHDHC   42 (51)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHTS-CCHHHHHHHHHHHS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHCC-CCHHHHHHHHHHcC
Confidence            46899999999999999999887 37888899998765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.35  E-value=0.092  Score=47.06  Aligned_cols=84  Identities=18%  Similarity=0.058  Sum_probs=59.2

Q ss_pred             CcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccEE
Q 011347          356 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  435 (488)
Q Consensus       356 itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DLV  435 (488)
                      ..|||+=||.|.+.+.+-+..=+ ..+++||+++...........+.+-.+..++.+|+..+.. .+     ..+.+|.|
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~-~~-----~~~~~d~v  103 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD-VF-----EPGEVKRV  103 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH-HC-----CTTSCCEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc-cc-----Cchhhhcc
Confidence            45899999999999888776422 3578999999987766655544444445567788876531 12     23578988


Q ss_pred             EecCCCCCccc
Q 011347          436 ICQNSVPQIPN  446 (488)
Q Consensus       436 IGGpPCQ~FS~  446 (488)
                      .--+|+.-+..
T Consensus       104 ~i~fp~P~~k~  114 (204)
T d2fcaa1         104 YLNFSDPWPKK  114 (204)
T ss_dssp             EEESCCCCCSG
T ss_pred             ccccccccchh
Confidence            88888876654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.99  E-value=0.13  Score=46.91  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=58.4

Q ss_pred             hcccccc-CCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhH
Q 011347          345 LSVLKSM-FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF  422 (488)
Q Consensus       345 lsvLK~~-fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~I  422 (488)
                      +.-|+.+ ...|.+||||-||.|++..-|.+. |-.- .|++||+++...+.++..-..  ..+...+..|......-  
T Consensus        63 ~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~~~--  137 (227)
T d1g8aa_          63 MNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEEY--  137 (227)
T ss_dssp             HTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGGG--
T ss_pred             HccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCcccc--
Confidence            3334442 346899999999999999888753 4222 478999999998887764322  12222345565543321  


Q ss_pred             HHhhhccCCccEEEecCCCCCc
Q 011347          423 ESLIHKLGSIDFVICQNSVPQI  444 (488)
Q Consensus       423 e~l~~~~g~~DLVIGGpPCQ~F  444 (488)
                         ......+|+|+-..||.+.
T Consensus       138 ---~~~~~~vD~i~~d~~~~~~  156 (227)
T d1g8aa_         138 ---RALVPKVDVIFEDVAQPTQ  156 (227)
T ss_dssp             ---TTTCCCEEEEEECCCSTTH
T ss_pred             ---cccccceEEEEEEccccch
Confidence               1123578999888777643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.053  Score=47.92  Aligned_cols=81  Identities=15%  Similarity=0.113  Sum_probs=52.2

Q ss_pred             CCCCCcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      +.++.+||||-|+-||.+..+ ++.+-. ..++++|+.+..           ...+..++.+||.+.............+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~-~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeecccc-ceEEEeeccccc-----------ccCCceEeecccccchhhhhhhhhccCc
Confidence            456789999999999999754 445543 347899987752           2345556778887644322211111346


Q ss_pred             CccEEE--ecCCCCCc
Q 011347          431 SIDFVI--CQNSVPQI  444 (488)
Q Consensus       431 ~~DLVI--GGpPCQ~F  444 (488)
                      .+|||+  |+|.|++-
T Consensus        88 ~~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             CEEEEEECCCCCCCSC
T ss_pred             ceeEEEecccchhccc
Confidence            899998  56665543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.087  Score=48.35  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=51.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      .++.+|||+=||.|.+...|.+++-.. .++++|+++.+.+..+..     .+...+..+|+.++.-.        .+.|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~--------~~sf  148 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS--------DTSM  148 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC--------TTCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCC-EEEEecchHhhhhhhhcc-----cccccceeeehhhccCC--------CCCE
Confidence            356789999999999999999886443 467999999987766542     22333567888877532        1468


Q ss_pred             cEEE
Q 011347          433 DFVI  436 (488)
Q Consensus       433 DLVI  436 (488)
                      |+|+
T Consensus       149 D~v~  152 (268)
T d1p91a_         149 DAII  152 (268)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8887

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.30  E-value=0.11  Score=51.07  Aligned_cols=45  Identities=18%  Similarity=0.078  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChhHH-HHHHcCCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          354 GGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       354 ~~itVLDLFSGiGGlsl-GL~~aGi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      ++.+|||.|||.|+.++ ....+|.  +-|+++|+|+.|.+..+.+-.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~   90 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVM   90 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHH
Confidence            45789999999999998 4566775  458899999999999988754

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=91.74  E-value=0.14  Score=47.41  Aligned_cols=79  Identities=18%  Similarity=0.095  Sum_probs=54.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCC-CCCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~-~g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+|||+=||.|++++.|-++ |=. -.|+++|+++...+..+.++..... ....+..+|+.+.-.+         +
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~---------~  153 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD---------Q  153 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS---------C
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc---------c
Confidence            35789999999999999998765 422 2478999999988888877654321 1222455777654321         4


Q ss_pred             CccEEEecCCC
Q 011347          431 SIDFVICQNSV  441 (488)
Q Consensus       431 ~~DLVIGGpPC  441 (488)
                      .||.|+-..|.
T Consensus       154 ~fD~V~ld~p~  164 (250)
T d1yb2a1         154 MYDAVIADIPD  164 (250)
T ss_dssp             CEEEEEECCSC
T ss_pred             eeeeeeecCCc
Confidence            68988865554

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=91.02  E-value=0.13  Score=47.40  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhcc
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  429 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a---Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~  429 (488)
                      .++.+|||+=||.|.+..-|...   |.   .|.++|+++...+..+......+. ...+..+|+.++..         .
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~---------~   92 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL---------N   92 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---------S
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccc-cccccccccccccc---------c
Confidence            46789999999999988877653   33   367899999988777765443321 22345678776642         1


Q ss_pred             CCccEEEecCCCC
Q 011347          430 GSIDFVICQNSVP  442 (488)
Q Consensus       430 g~~DLVIGGpPCQ  442 (488)
                      +.||+|+...-++
T Consensus        93 ~~fD~v~~~~~l~  105 (281)
T d2gh1a1          93 DKYDIAICHAFLL  105 (281)
T ss_dssp             SCEEEEEEESCGG
T ss_pred             CCceEEEEehhhh
Confidence            4699998775444

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=90.78  E-value=0.12  Score=47.29  Aligned_cols=77  Identities=16%  Similarity=0.059  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      +..+|||+=||+|.++..|-..++.  .|.+||+++...+..+......  +...++..|+++++..        .+.+|
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~fD  160 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP--------PNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC--------SSCEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccC--------CCccc
Confidence            5678999999999999886544443  4788999999988887654321  1122456777766532        25689


Q ss_pred             EEEecCCCC
Q 011347          434 FVICQNSVP  442 (488)
Q Consensus       434 LVIGGpPCQ  442 (488)
                      +|+.....+
T Consensus       161 ~I~~~~vl~  169 (254)
T d1xtpa_         161 LIVIQWTAI  169 (254)
T ss_dssp             EEEEESCGG
T ss_pred             eEEeecccc
Confidence            888655443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=90.58  E-value=0.06  Score=48.84  Aligned_cols=42  Identities=17%  Similarity=0.095  Sum_probs=36.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  397 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~  397 (488)
                      +.+-.|||.|+|.|...+|.+++|-+   .+++|+++.+.++.+.
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~---~Ig~El~~~y~~~a~~  290 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAF  290 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHG
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCc---EEEEeCCHHHHHHHHH
Confidence            46678999999999999999999964   5789999998877754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.51  E-value=0.26  Score=43.96  Aligned_cols=84  Identities=19%  Similarity=0.057  Sum_probs=57.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCccE
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  434 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~DL  434 (488)
                      ...|||+=||.|.+.+.+.+..=+ ..+++||+++...........+.+-.+..+..+|+.++.. .+     ..+.+|.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~-~~-----~~~~~~~  104 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEIDR  104 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCSE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh-hc-----cCCceeh
Confidence            346899999999999888777433 3578999999865544444444444444567788877642 22     1257899


Q ss_pred             EEecCCCCCcc
Q 011347          435 VICQNSVPQIP  445 (488)
Q Consensus       435 VIGGpPCQ~FS  445 (488)
                      |.--+|..=+-
T Consensus       105 i~i~fPdPw~K  115 (204)
T d1yzha1         105 LYLNFSDPWPK  115 (204)
T ss_dssp             EEEESCCCCCS
T ss_pred             hcccccccccc
Confidence            98888876544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.46  E-value=0.24  Score=43.37  Aligned_cols=48  Identities=15%  Similarity=0.227  Sum_probs=37.0

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHH----cCCeeeeEEEeeCCHHHHHHHHHHh
Q 011347          349 KSMFPGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWW  399 (488)
Q Consensus       349 K~~fp~~itVLDLFSGiGGlslGL~~----aGi~~k~vvsVEid~~a~~t~~~~~  399 (488)
                      +.+.+.+-+||||=||.|.++..|.+    .|.+   |.++|+++...+..+..-
T Consensus        34 ~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~---v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_          34 ERFVTADSNVYDLGCSRGAATLSARRNINQPNVK---IIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCE---EEEECSCHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCc---eEEeCCCHHHHHHHHHHh
Confidence            44556678999999999999988865    3543   678999999877776543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.27  Score=45.91  Aligned_cols=87  Identities=10%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||++||-||=+..+..++-+. .++|+|+++.-.+.++......+.....+...|-.      ... ....+.||
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~-~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~------~~~-~~~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY------PSQ-WCGEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC------THH-HHTTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhhhh-hhhhhhcchhhhhhHhhhhhcccccceeeeccccc------cch-hccccccc
Confidence            46789999999999999988887653 47899999999888887655443322211111111      011 11235799


Q ss_pred             EEEecCCCCCccccC
Q 011347          434 FVICQNSVPQIPNSK  448 (488)
Q Consensus       434 LVIGGpPCQ~FS~an  448 (488)
                      .|+-=+||.+-....
T Consensus       174 ~IL~DaPCSg~G~~r  188 (284)
T d1sqga2         174 RILLDAPCSATGVIR  188 (284)
T ss_dssp             EEEEECCCCCGGGTT
T ss_pred             EEEEeccccccCccc
Confidence            999999999887643

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.90  E-value=0.4  Score=45.40  Aligned_cols=87  Identities=10%  Similarity=0.025  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCCcc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  433 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~~D  433 (488)
                      .+.+|||++||-||=+..+..+--.--.++++|+++.-.+.++......+.....+...|-..+.        ...+.||
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~--------~~~~~fD  187 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG--------ELNVEFD  187 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG--------GGCCCEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc--------ccccccc
Confidence            46789999999999777665433222247899999988887776555444333333334433322        1236799


Q ss_pred             EEEecCCCCCccccC
Q 011347          434 FVICQNSVPQIPNSK  448 (488)
Q Consensus       434 LVIGGpPCQ~FS~an  448 (488)
                      .|.-=+||.+-...+
T Consensus       188 ~ILvDaPCSg~G~~~  202 (313)
T d1ixka_         188 KILLDAPCTGSGTIH  202 (313)
T ss_dssp             EEEEECCTTSTTTCC
T ss_pred             EEEEccccccCCcee
Confidence            999999999876543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=89.60  E-value=0.16  Score=44.68  Aligned_cols=42  Identities=17%  Similarity=0.217  Sum_probs=35.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  397 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~  397 (488)
                      ..+-.|||.|+|.|...+|-+++|-+   .+++|+++...++.+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~---~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANF  252 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCe---EEEEeCCHHHHHHHHH
Confidence            45678999999999999999999953   6789999987766543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.21  E-value=0.49  Score=42.02  Aligned_cols=83  Identities=11%  Similarity=0.008  Sum_probs=53.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhhHHHhhhccCC
Q 011347          352 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  431 (488)
Q Consensus       352 fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~Ie~l~~~~g~  431 (488)
                      ...+.+||||=||.|+....+...-=+ ..|++||+++...+.++..-...  .+...+..|.......     ......
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~-----~~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY-----SGIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-----TTTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCcccc-----ccccce
Confidence            456899999999999999888764212 24899999999888776543322  2223455666553321     112346


Q ss_pred             ccEEEecCCCC
Q 011347          432 IDFVICQNSVP  442 (488)
Q Consensus       432 ~DLVIGGpPCQ  442 (488)
                      +|+|..-.++.
T Consensus       126 vd~v~~~~~~~  136 (209)
T d1nt2a_         126 VDLIYQDIAQK  136 (209)
T ss_dssp             EEEEEECCCST
T ss_pred             EEEEEecccCh
Confidence            78777655544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.82  E-value=0.14  Score=45.64  Aligned_cols=43  Identities=19%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      ..+-.|||.|+|.|...+|-+++|-+   .+++|+++....+.+.-
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lgR~---~ig~El~~~y~~~a~~R  248 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQ  248 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHH
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhCCe---EEEEeCCHHHHHHHHHH
Confidence            35567999999999999999999954   67899999988877653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.23  Score=44.12  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhh
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  401 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~  401 (488)
                      +.+.+|||+=||.|+.+..+.+.+.  ..+++||+|+...+..+.+...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhh
Confidence            5678999999999999998888763  4578999999998888876543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=88.52  E-value=0.29  Score=47.78  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc----CCe--------eeeEEEeeCCHHHHHHHHHHhhhcCCC--CCcceeccccccCh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL----GIK--------LKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  419 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a----Gi~--------~k~vvsVEid~~a~~t~~~~~~~~n~~--g~lv~~~DI~~L~~  419 (488)
                      .+.+|+|-+||.|||-+++.+.    +..        -..+.++|+++.+.++.+.+..-+...  ...+..+|.-+-  
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence            4678999999999998776431    100        113789999999887776543322111  111222332211  


Q ss_pred             hhHHHhhhccCCccEEEecCCC
Q 011347          420 KKFESLIHKLGSIDFVICQNSV  441 (488)
Q Consensus       420 ~~Ie~l~~~~g~~DLVIGGpPC  441 (488)
                             .....+|+|+|=||=
T Consensus       240 -------~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         240 -------EPSTLVDVILANPPF  254 (425)
T ss_dssp             -------CCSSCEEEEEECCCS
T ss_pred             -------hcccccceEEecCCC
Confidence                   123579999999985

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.45  E-value=0.44  Score=43.25  Aligned_cols=83  Identities=17%  Similarity=0.112  Sum_probs=54.9

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccChhh
Q 011347          342 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK  421 (488)
Q Consensus       342 ~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~~~~  421 (488)
                      +..|..|.  ...+.+|||+=||.|-++.-|.+++-   -|+++|+++......+..+...  ....+..+|....-.+ 
T Consensus        60 a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~-  131 (224)
T d1vbfa_          60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEE-  131 (224)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGG-
T ss_pred             HHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcc--cccccccCchhhcchh-
Confidence            44444443  34678999999999999988888874   3789999999988887755432  2233455665543221 


Q ss_pred             HHHhhhccCCccEEEecC
Q 011347          422 FESLIHKLGSIDFVICQN  439 (488)
Q Consensus       422 Ie~l~~~~g~~DLVIGGp  439 (488)
                             .++||.|+-+.
T Consensus       132 -------~~pfD~Iiv~~  142 (224)
T d1vbfa_         132 -------EKPYDRVVVWA  142 (224)
T ss_dssp             -------GCCEEEEEESS
T ss_pred             -------hhhHHHHHhhc
Confidence                   24677655433

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=88.26  E-value=0.41  Score=44.35  Aligned_cols=79  Identities=16%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcceeccccccChhhHHHhhhccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  430 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~-g~lv~~~DI~~L~~~~Ie~l~~~~g  430 (488)
                      ..+.+|||+-||.|+++..|-++ |-. -.|+++|+++...+..+.+....+.. ...+..+|+..--         ...
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~-G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~---------~~~  171 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEK  171 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc---------ccc
Confidence            36889999999999999999764 322 23789999999888888776554321 1123345543211         114


Q ss_pred             CccEEEecCCC
Q 011347          431 SIDFVICQNSV  441 (488)
Q Consensus       431 ~~DLVIGGpPC  441 (488)
                      .+|.|+-.-|.
T Consensus       172 ~~D~V~~d~p~  182 (266)
T d1o54a_         172 DVDALFLDVPD  182 (266)
T ss_dssp             SEEEEEECCSC
T ss_pred             ceeeeEecCCC
Confidence            67877766654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.52  Score=42.33  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=61.4

Q ss_pred             cCcchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCeeeeEEEeeCCHHHHHHHHHHhhhcCC-----CCCccee
Q 011347          338 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQ-----TGELVQI  411 (488)
Q Consensus       338 vdti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~-aGi~~k~vvsVEid~~a~~t~~~~~~~~n~-----~g~lv~~  411 (488)
                      ...+++.|..|......+.+|||+=||.|-.+.-|-+ .|-. -.|+++|+++...+..+.+..+.+.     ....+..
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~-g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~  138 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  138 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence            3456777888876667789999999999988766654 3422 2478999999887776665443221     1122345


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCC
Q 011347          412 EDIQALTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       412 ~DI~~L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      +|....-.+        .+.||+|+-+.-+.
T Consensus       139 gD~~~~~~~--------~~~fD~I~~~~~~~  161 (224)
T d1i1na_         139 GDGRMGYAE--------EAPYDAIHVGAAAP  161 (224)
T ss_dssp             SCGGGCCGG--------GCCEEEEEECSBBS
T ss_pred             eecccccch--------hhhhhhhhhhcchh
Confidence            666543322        25788877655443

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.46  E-value=0.23  Score=39.19  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             hhhHHhcCCCHHHHHHHHHHhCCCCchhhhhhhhhhcc
Q 011347            4 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ   41 (488)
Q Consensus         4 ~~~l~~mgf~~~e~~~ai~~~g~~~~~~~l~d~i~a~~   41 (488)
                      +.+|++|||+++.|..|+-.-|. ..++.-++-||+-+
T Consensus        33 v~~L~~MGF~~~~a~~AL~~t~n-~~~e~A~~Wl~~h~   69 (84)
T d1veka_          33 VAQLVSMGFSQLHCQKAAINTSN-AGVEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHTTT-CCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHcC-CCHHHHHHHHHHcC
Confidence            46899999999999999988776 47999999999866

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.94  E-value=1.1  Score=40.20  Aligned_cols=90  Identities=20%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             cchhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347          340 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  418 (488)
Q Consensus       340 ti~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~  418 (488)
                      +++..|+.|.  ...+.+||++=||.|-.+.-+-++ |-   .|+++|+++......+..+.+.+.....+..+|+.+.-
T Consensus        66 ~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g~---~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~  140 (215)
T d1jg1a_          66 MVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKT---DVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHCS---CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhCc---eeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC
Confidence            3455666664  346789999999999998777754 62   27899999987777777766555455556778887543


Q ss_pred             hhhHHHhhhccCCccEEEecCCCC
Q 011347          419 TKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       419 ~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      ..        .++||.|+-+.-+.
T Consensus       141 ~~--------~~pfD~Iiv~~a~~  156 (215)
T d1jg1a_         141 PP--------KAPYDVIIVTAGAP  156 (215)
T ss_dssp             GG--------GCCEEEEEECSBBS
T ss_pred             cc--------cCcceeEEeecccc
Confidence            32        36899887655444

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.99  Score=40.49  Aligned_cols=58  Identities=16%  Similarity=0.179  Sum_probs=39.1

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          341 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       341 i~~~lsvLK~~fp~~itVLDLFSGiGGlslGL~~a------Gi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      +...+..|... +..++|||+=||.|.++..+-..      +..+ .+.+||+++...+.++....
T Consensus        28 l~~~l~~l~~~-~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~-~~~~vD~s~~~l~~a~~~~~   91 (280)
T d1jqea_          28 LPGIIGRIGDT-KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVA   91 (280)
T ss_dssp             HHHHTTTTTTT-CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhccC-CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCce-EEEEEeCcHHHHHHHHHHHh
Confidence            34445555432 34578999999999988766332      4433 35789999998888776543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.51  E-value=0.54  Score=44.95  Aligned_cols=46  Identities=30%  Similarity=0.404  Sum_probs=36.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCeeeeEEEeeCCHHHHHHHHHHhh
Q 011347          354 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE  400 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~a-Gi~~k~vvsVEid~~a~~t~~~~~~  400 (488)
                      .|.+|||+-||.|++++.|-++ |=.- .|+++|+++...+..+.++.
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~  144 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYK  144 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHH
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHH
Confidence            5789999999999999999864 3221 37899999988777666554

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.25  E-value=0.27  Score=32.78  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.7

Q ss_pred             hhhhhHHhcCCCHHHHHHHHHHhCCC
Q 011347            2 EITLQLLEMGFSENQVSLAIEKFGSK   27 (488)
Q Consensus         2 ~k~~~l~~mgf~~~e~~~ai~~~g~~   27 (488)
                      .|+-+|+.|||..-|+..|+|...-|
T Consensus         4 skiaqlvsmgfdpleaaqaldaangd   29 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANGD   29 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcCc
Confidence            37889999999999999999987655

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=84.89  E-value=0.3  Score=41.79  Aligned_cols=50  Identities=24%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  418 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~  418 (488)
                      +-+|||+=||.|.+...+.+       ++++|+++...+..+.     +  +..++.+|+.++.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~-----~--~~~~~~~d~~~l~   86 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARK-----R--GVFVLKGTAENLP   86 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHH-----T--TCEEEECBTTBCC
T ss_pred             CCeEEEECCCCcccccccce-------EEEEeCChhhcccccc-----c--ccccccccccccc
Confidence            34899999999988776632       4689999998776653     1  2335667777664

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.87  E-value=0.82  Score=43.08  Aligned_cols=64  Identities=9%  Similarity=0.076  Sum_probs=41.8

Q ss_pred             CCCCcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHHhhh---------cCCCCCcceeccccccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWES---------SGQTGELVQIEDIQALT  418 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~~~~---------~n~~g~lv~~~DI~~L~  418 (488)
                      ..+-+||||-||.|++.+-+ ...|.  +.+++||+++.+.+..+.....         ..+....++.+|+.++.
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~  223 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE  223 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence            34678999999999998755 45565  3478999999887665432211         11222335667876543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=83.84  E-value=0.85  Score=41.42  Aligned_cols=61  Identities=16%  Similarity=0.042  Sum_probs=48.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccccC
Q 011347          353 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  418 (488)
Q Consensus       353 p~~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~L~  418 (488)
                      ..+-+||++=+|.|-++..|-+.|-   .|.+||+|+.....++..+..  +....++.+|+-+++
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~   80 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFK   80 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCC
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhcc
Confidence            3567899999999999999998884   378899999999988875432  334446779998775

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=3.5  Score=40.95  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=49.0

Q ss_pred             CCCcccccCCCCChhHHHHHH-c---CC-------------eeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcceeccccc
Q 011347          354 GGLTMLSVFSGIGGAEVTLHR-L---GI-------------KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  416 (488)
Q Consensus       354 ~~itVLDLFSGiGGlslGL~~-a---Gi-------------~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv~~~DI~~  416 (488)
                      .+.+|+|-+||.|||-++..+ +   +-             ....++++|+++.+.++.+.+..-+..... +..+|...
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~-i~~~~~~~  242 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGAIR  242 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBSEE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccc-ccccchhh
Confidence            357899999999999876532 1   00             012478999999988777654432222121 12222211


Q ss_pred             cChhhHHHhhhccCCccEEEecCCCC
Q 011347          417 LTTKKFESLIHKLGSIDFVICQNSVP  442 (488)
Q Consensus       417 L~~~~Ie~l~~~~g~~DLVIGGpPCQ  442 (488)
                      ... .+..-......||+|+|=||=.
T Consensus       243 ~~~-~l~~d~~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         243 LGN-TLGSDGENLPKAHIVATNPPFG  267 (524)
T ss_dssp             ESC-TTSHHHHTSCCEEEEEECCCCT
T ss_pred             hhh-hhhhcccccccceeEEecCCcc
Confidence            111 0100111346799999999864

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.55  E-value=1.4  Score=40.57  Aligned_cols=51  Identities=22%  Similarity=0.342  Sum_probs=36.9

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHH-HHcCCeeeeEEEeeCCHHHHHHHHHH
Q 011347          343 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRW  398 (488)
Q Consensus       343 ~~lsvLK~~fp~~itVLDLFSGiGGlslGL-~~aGi~~k~vvsVEid~~a~~t~~~~  398 (488)
                      ++++.|.  ...+.+|||+=||.||+..=+ ++.|.+   |.++++++...+..+..
T Consensus        43 ~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g~~---v~gi~ls~~q~~~a~~~   94 (280)
T d2fk8a1          43 LNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQV   94 (280)
T ss_dssp             HHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHH
T ss_pred             HHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCcee---EEEecchHHHHHHHHHH
Confidence            3444442  346899999999999998644 456864   67899999987665543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=82.39  E-value=0.61  Score=43.31  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCeeeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--eeccccccChhhHHHhhhccCCc
Q 011347          355 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSI  432 (488)
Q Consensus       355 ~itVLDLFSGiGGlslGL~~aGi~~k~vvsVEid~~a~~t~~~~~~~~n~~g~lv--~~~DI~~L~~~~Ie~l~~~~g~~  432 (488)
                      ..+|||+++|.|.-+.-|-.+|.+   |.++|-++.....++.............  ...-|+-+..+.++-+......+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~~---V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CCEEEECCCcccHHHHHHHhCCCE---EEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            358999999999999999999975   6889999998877775443321111100  01122323333333222223579


Q ss_pred             cEEEecCCC
Q 011347          433 DFVICQNSV  441 (488)
Q Consensus       433 DLVIGGpPC  441 (488)
                      |+|.==|+=
T Consensus       166 DvIYlDPMF  174 (250)
T d2oyra1         166 QVVYLDPMF  174 (250)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999988864