Citrus Sinensis ID: 011368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
Protein Sequence
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEccccEEEEEEEcccccccccccccccEEEEcccccccccccEEEEEEEcccccccccccEEEEccEEEEEEEEcccccEEEEEEccccEEEEEEEcccEEEEEcccccccccccccEEccccccccccccccccccEEEEEEccEEEEccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEccccccccccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEEccccccccccccccccccccEEEEEEccccEEEEEEcccEEEEEEccccccccEEEEcccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEccccccccccccHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccEEEEcccEEEEcccEEEEEEEEEcccccEEEEccccEEEEEEcccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEccccEEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHccEEEcccccEEEEccEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHEHHHcccccccEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
MILNREEASASLEWKCSqafgernpdeelqdvdivsaiefdktgdylavgdrggRVILFetvggkntpnqhisRSELEKqmdftstshpeyryktefqshepefdylKSLEIEEKINRVrwcaapngsmfilstndktiKLWKVRDQKVKKikemdhfpfvssentllaeknfmnehnppsfahgyhlewtenmatkvyphahdfninsisnnsdcetfvsaDDLRINLWnleisdqcfnivdmkpsnmddltevitsaefhpIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAaeshgsksfFTEIIASISdikfandgqhllsrDYMNLKLWDirmdstpvatfkihehlrpklcdlynndsifdkfecsvsgdglhfatgsySNLLRIFShgvgsaggitveagknenrkpilqaaprarrssLSNLTRGLYRQahensssghhelsYNLSSKLLhlawhpttnliacangnslffhya
Flexible Loop (DISEMBL)
milnreeasasleWKCSQAFgernpdeelqDVDIVSAIEFDKTGDYLAVGDRGGRVILfetvggkntpnqhisrseleKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCaapngsmfilstndktiklWKVRDQKVKkikemdhfpfvsSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGItveagknenrkpilqaaprarrsslsNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Low Complexity Region (SEG)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFninsisnnsDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered region (IsUnstruct)
*****************************QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG***************************************EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV*********************************************SYNLSSKLLHLAWHPTTNLIACANGNSLFFHY*
Disordered Region (DISOPRED)
***************CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN**************************************ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered Region (DISEMBL)
************EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR***********ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered Region (DISPRO)
**********SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG*********************STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM*********************HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE*HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK****************************************LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	487	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.960	0.934	0.590	1e-163
Q0E2P1	525	Serine/threonine protein	yes	no	0.946	0.878	0.571	1e-161
A2X2K3	525	Serine/threonine protein	N/A	no	0.946	0.878	0.571	1e-161
Q5Z8Z7	581	Serine/threonine protein	no	no	0.971	0.814	0.557	1e-156
Q38821	513	Serine/threonine protein	no	no	0.965	0.916	0.550	1e-154
Q12702	463	Protein phosphatase PP2A	yes	no	0.885	0.930	0.478	1e-118
Q6DIY3	447	Serine/threonine-protein	yes	no	0.868	0.946	0.448	1e-109
Q925E7	453	Serine/threonine-protein	yes	no	0.868	0.933	0.439	1e-107
Q5ZIY5	451	Serine/threonine-protein	yes	no	0.868	0.937	0.437	1e-107
Q66LE6	453	Serine/threonine-protein	yes	no	0.868	0.933	0.439	1e-107

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  575 bits (1482), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/496 (59%), Positives = 371/496 (74%), Gaps = 28/496 (5%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query: 71  HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
             SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct: 72  GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEK--NFMNE--HNP 179
           +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K  +++++    P
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query: 180 PSFAHGYHLEWT-----ENMATK---VYPHAHDFNINSISNNSDCETFVSADDLRINLWN 231
           P       L         N+  +   VY HAHD++INSISN+SD ETF+SADDLR+NLWN
Sbjct: 190 PGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWN 249

Query: 232 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 291
           LEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALCD 
Sbjct: 250 LEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDS 309

Query: 292 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 351
             ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA++
Sbjct: 310 HTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASY 368

Query: 352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 411
           ++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA
Sbjct: 369 QVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEA 428

Query: 412 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT 471
            KN  R+ I   A  +R  S+ ++TR + R+  E+  +  +  +Y+ ++KLLH+AWHPT 
Sbjct: 429 SKNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHPTE 485

Query: 472 NLIACANGNSLFFHYA 487
           N IACA  NSL+ +YA
Sbjct: 486 NSIACAAANSLYMYYA 501

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/509 (57%), Positives = 360/509 (70%), Gaps = 48/509 (9%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMD----------------------------------HF 158
           STNDKTIK WKV+++KVK+I  M+                                  +F
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNF 205

Query: 159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCET 218
           P     N LL           P    G  L        +VY HAHD++INSISNNSD ET
Sbjct: 206 P----NNDLLFPPGGCTSLRLPVVVTGQDLNLVPR-CRRVYSHAHDYHINSISNNSDGET 260

Query: 219 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 278
           ++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +
Sbjct: 261 YISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSI 320

Query: 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 338
           RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM LKL
Sbjct: 321 RLIDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKL 379

Query: 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398
           WDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F 
Sbjct: 380 WDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 439

Query: 399 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNL 458
              GSA   T+EA +N  R+ +      AR  +L++LTR + R+  EN     +  SY+L
Sbjct: 440 CTPGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSYDL 496

Query: 459 SSKLLHLAWHPTTNLIACANGNSLFFHYA 487
           S+KLLHLAWHPT N IACA  NSL+ +YA
Sbjct: 497 STKLLHLAWHPTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  568 bits (1463), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/509 (57%), Positives = 360/509 (70%), Gaps = 48/509 (9%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMD----------------------------------HF 158
           STNDKTIK WKV+++KVK+I  M+                                  +F
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNF 205

Query: 159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCET 218
           P     N LL           P    G  L        +VY HAHD++INSISNNSD ET
Sbjct: 206 P----NNDLLFPPGGCTSLRLPVVVTGQDLNLVPR-CRRVYSHAHDYHINSISNNSDGET 260

Query: 219 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 278
           ++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +
Sbjct: 261 YISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSI 320

Query: 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 338
           RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM LKL
Sbjct: 321 RLIDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKL 379

Query: 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398
           WDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F 
Sbjct: 380 WDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 439

Query: 399 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNL 458
              GSA   T+EA +N  R+ +      AR  +L++LTR + R+  EN     +  SY+L
Sbjct: 440 CTPGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSYDL 496

Query: 459 SSKLLHLAWHPTTNLIACANGNSLFFHYA 487
           S+KLLHLAWHPT N IACA  NSL+ +YA
Sbjct: 497 STKLLHLAWHPTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  551 bits (1421), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/509 (55%), Positives = 363/509 (71%), Gaps = 36/509 (7%)

Query: 6   EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65
           ++   ++EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +
Sbjct: 23  QQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAR 82

Query: 66  NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125
           +    + SR E+E+Q D   T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC   
Sbjct: 83  D----NASRREMERQ-DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTA 137

Query: 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-----------HFPFVSSENTLLA----- 169
           N S+ +LSTNDKTIK WKV+++KVK++  M+                SS   LL      
Sbjct: 138 NNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCS 197

Query: 170 -EKNFMNEHN--PPSFAHGYHLEWTE-----NMATK---VYPHAHDFNINSISNNSDCET 218
            + +F+N     PP       L         N+  +   VY HAHD++INSIS NSD ET
Sbjct: 198 DKSSFLNSDILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGET 257

Query: 219 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 278
           ++SADDLRINLWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYSSS+G +
Sbjct: 258 YISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSI 317

Query: 279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 338
           RL+D+RQSALCD+ ++I  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKL
Sbjct: 318 RLIDLRQSALCDNHSKIFEEH-EAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKL 376

Query: 339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398
           WD+ MDS PV+TF++HEHLRPKLCDLY NDSIFDKFEC +SGDGLH ATGSY NL R+F 
Sbjct: 377 WDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRVFG 436

Query: 399 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNL 458
              GS    T+EA +N  R+ I+   P     +L++L RG+ R+  EN     +  S++ 
Sbjct: 437 CTPGSTEATTLEASRNPMRRQIVN--PTRPTRTLTSLARGV-RRGGENQGVDANGNSFDF 493

Query: 459 SSKLLHLAWHPTTNLIACANGNSLFFHYA 487
           S+KLLHLAWHPT N IACA  NSL+ +YA
Sbjct: 494 STKLLHLAWHPTENSIACAAANSLYMYYA 522

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  546 bits (1407), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/512 (55%), Positives = 359/512 (70%), Gaps = 42/512 (8%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           + S  LEW+ SQ FGER+  EE+Q+VDI+SAIEFD +G++LA GDRGGRV+LFE     +
Sbjct: 13  DPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERT---D 69

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           T N   +R ELE + D+    HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC   N
Sbjct: 70  TNNSSGTRRELE-EADYP-LRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTAN 127

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA----------------- 169
           G++F+LSTNDKTIK WKV+D+K+KKI +M+  P  +  N  +A                 
Sbjct: 128 GALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGV 187

Query: 170 ---EKNFMNEHNPPS---------FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE 217
                +  N+ + P+              H         +VY HAHD++INSISNNSD E
Sbjct: 188 SEVNNSLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDGE 247

Query: 218 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277
           TF+SADDLRINLWNLEIS+Q FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G 
Sbjct: 248 TFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGS 307

Query: 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 337
           +RL+D+RQSALCD  +++  +  E  G KSFFTEIIAS+SDIKFA +G++LLSRDYM LK
Sbjct: 308 IRLIDLRQSALCDSHSKLFEEP-EQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLK 366

Query: 338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 397
           LWDI MD+ PVATF++HE+L+PKLCDLY NDSIFDKFEC +SG+GL  ATGSYSNL R+F
Sbjct: 367 LWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVF 426

Query: 398 SHGVGSAGGITVEAGKNENRK--PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 455
               GS    T+EA +N  R+  PI     RA    LS++TR + R +      G+   +
Sbjct: 427 GVAPGSTETATLEASRNPMRRHVPIPSRPSRA----LSSITRVVSRGSESPGVDGNTN-A 481

Query: 456 YNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487
            + ++KLLHLAWHP  N IACA  NSL+ +YA
Sbjct: 482 LDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  427 bits (1097), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/489 (47%), Positives = 312/489 (63%), Gaps = 58/489 (11%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           +WK +Q FG++   E++ + DI+SA+EFD TGDYLA GD+GGRV+LFE            
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFE------------ 57

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R+  +K          EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+L
Sbjct: 58  -RNHSKKGC--------EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLL 108

Query: 133 STNDKTIKLWKVRDQKVKKIKEMD-----HFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187
           STNDKTIKLWK+ ++ +K + E +     H P      T        ++   P   H  H
Sbjct: 109 STNDKTIKLWKLYEKNLKVVAENNLSDSFHSPMQGPLTT-------PSQLRLPRLNH--H 159

Query: 188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS 247
                    +VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD  FNIVD+KP 
Sbjct: 160 DMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHSFNIVDIKPE 219

Query: 248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 307
           NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++  D  E   SKS
Sbjct: 220 NMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED-QEDQDSKS 278

Query: 308 FFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 367
           FF+EII+SISD+KF+ +G+++LSRDY+ LK+WD+ M+  PV T  +H+ LR KLCDLY N
Sbjct: 279 FFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYEN 338

Query: 368 DSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKNENRKPILQAA 424
           D IFDKFEC+ SGD  H  +GSYSN   I+   S   G  G I ++A K         AA
Sbjct: 339 DCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADK---------AA 389

Query: 425 PRARRSSLSNLT----------RGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI 474
            RAR+S+ +N+           R   + A  ++S G    + + + K+LH +WHP  + +
Sbjct: 390 FRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDNLDYNKKILHASWHPFEDSV 449

Query: 475 ACANGNSLF 483
           A A  N+LF
Sbjct: 450 AIAATNNLF 458

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/482 (44%), Positives = 302/482 (62%), Gaps = 59/482 (12%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 10  FQWCFSQVKGA--IDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQR---------- 57

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 111

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++V+         +  D F   S    +L   + M E +P   
Sbjct: 112 LSTNDKTIKLWKISERDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP--- 168

Query: 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 242
                         +++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIV
Sbjct: 169 -------------RRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIV 215

Query: 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 302
           D+KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E 
Sbjct: 216 DIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEE-PED 274

Query: 303 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 362
             S+SFF+EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC
Sbjct: 275 PSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLC 334

Query: 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422
            LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP   
Sbjct: 335 SLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--NTRRDITLEASR-ESSKPRAI 391

Query: 423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 482
             PR        +  G  R+  E +       S + + K+LH AWHPT N+IA A  N+L
Sbjct: 392 LKPR-------KVCTGGKRKKDEINVD-----SLDFNKKILHTAWHPTDNIIAVAATNNL 439

Query: 483 FF 484
           + 
Sbjct: 440 YI 441

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q925E7|2ABD_MOUSE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Mus musculus GN=Ppp2r2d PE=2 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/482 (43%), Positives = 298/482 (61%), Gaps = 59/482 (12%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 16  FQWCFSQVKGA--VDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQR---------- 63

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++    + S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 64  ------EQENKGRAHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 117

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++ +         +  D F   +    +L   + M E +P   
Sbjct: 118 LSTNDKTIKLWKISERDKRAEGYNLKDEDGRLRDPFRITALRVPILKPMDLMVEASP--- 174

Query: 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 242
                         +++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIV
Sbjct: 175 -------------RRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIV 221

Query: 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 302
           D+KP+NM++LTEVIT+AEFHP  CN+  YSSS+G +RL DMR SALCD  A+   +  E 
Sbjct: 222 DIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEE-PED 280

Query: 303 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 362
             S+SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M+  PV T ++HE+LR KLC
Sbjct: 281 PSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHQVHEYLRSKLC 340

Query: 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422
            LY ND IFDKFEC  +G      TGSY+N  R+F     +   +T+EA + EN KP   
Sbjct: 341 SLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--NTRRDVTLEASR-ENSKPRAS 397

Query: 423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 482
             PR        +  G  R+  E S       S + + K+LH AWHP  ++IA A  N+L
Sbjct: 398 LKPR-------KVCTGGKRKKDEISVD-----SLDFNKKILHTAWHPMESIIAVAATNNL 445

Query: 483 FF 484
           + 
Sbjct: 446 YI 447

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Mus musculus (taxid: 10090)

>sp|Q5ZIY5|2ABD_CHICK Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/482 (43%), Positives = 300/482 (62%), Gaps = 59/482 (12%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 14  FQWCFSQVQGA--VDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQR---------- 61

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 62  ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 115

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++ +         +  D F   +    +L   + M E +P   
Sbjct: 116 LSTNDKTIKLWKISERDKRAEGYNLKDEDGRLRDPFKITALRVPILKPMDLMVEASP--- 172

Query: 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 242
                         +++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIV
Sbjct: 173 -------------RRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIV 219

Query: 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 302
           D+KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E 
Sbjct: 220 DIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEE-PED 278

Query: 303 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 362
             S+SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC
Sbjct: 279 PSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLC 338

Query: 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422
            LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP   
Sbjct: 339 SLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFDR--NTRRDITLEASR-ESSKPRAI 395

Query: 423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 482
             PR        +  G  R+  E +       S + + K+LH AWHP  N+IA A  N+L
Sbjct: 396 LKPR-------KVCTGGKRKKDEINVD-----SLDFNKKILHTAWHPMENIIAVAATNNL 443

Query: 483 FF 484
           + 
Sbjct: 444 YI 445

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Gallus gallus (taxid: 9031)

>sp|Q66LE6|2ABD_HUMAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/482 (43%), Positives = 298/482 (61%), Gaps = 59/482 (12%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 16  FQWCFSQVKGA--IDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQR---------- 63

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 64  ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 117

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++ +         +  D F   +    +L   + M E +P   
Sbjct: 118 LSTNDKTIKLWKISERDKRAEGYNLKDEDGRLRDPFRITALRVPILKPMDLMVEASP--- 174

Query: 183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 242
                         +++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIV
Sbjct: 175 -------------RRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIV 221

Query: 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 302
           D+KP+NM++LTEVIT+AEFHP  CN+  YSSS+G +RL DMR SALCD  ++   +  E 
Sbjct: 222 DIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEE-PED 280

Query: 303 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 362
             S+SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M+S PV T ++HE+LR KLC
Sbjct: 281 PSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQVHEYLRSKLC 340

Query: 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422
            LY ND IFDKFEC  +G      TGSY+N  R+F     +   +T+EA + E+ KP   
Sbjct: 341 SLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--DTRRDVTLEASR-ESSKPRAS 397

Query: 423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 482
             PR        +  G  R+  E S       S + + K+LH AWHP  N+IA A  N+L
Sbjct: 398 LKPR-------KVCTGGKRRKDEISVD-----SLDFNKKILHTAWHPVDNVIAVAATNNL 445

Query: 483 FF 484
           + 
Sbjct: 446 YI 447

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
359491379	507	PREDICTED: serine/threonine protein phos	0.983	0.944	0.724	0.0
297733754	503	unnamed protein product [Vitis vinifera]	0.975	0.944	0.722	0.0
224133594	520	predicted protein [Populus trichocarpa]	0.979	0.917	0.696	0.0
255540613	506	protein phosphatase pp2a regulatory subu	0.969	0.932	0.732	0.0
449440662	514	PREDICTED: serine/threonine protein phos	0.995	0.943	0.647	0.0
356508685	506	PREDICTED: serine/threonine protein phos	0.987	0.950	0.615	1e-176
224088860	521	predicted protein [Populus trichocarpa]	0.960	0.898	0.581	1e-162
11094369	515	Ser/Thr specific protein phosphatase 2A	0.981	0.928	0.573	1e-162
30685484	500	Protein phosphatase 2A, regulatory subun	0.960	0.936	0.591	1e-162
212274793	514	uncharacterized protein LOC100191387 [Ze	0.950	0.900	0.596	1e-162

>gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/504 (72%), Positives = 426/504 (84%), Gaps = 25/504 (4%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           + NQ  SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 66  SLNQWHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 124

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 125 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 184

Query: 187 HLEWTE---NMAT--------------------KVYPHAHDFNINSISNNSDCETFVSAD 223
            LEWTE   NM+                     KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 185 ALEWTEKIDNMSPSQDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 244

Query: 224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 283
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 245 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 304

Query: 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 343
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 305 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 363

Query: 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 364 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 423

Query: 404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 463
             GIT+EA +N NRK  LQAAP+ARRSS+SNLTRG  RQA+EN SSG +ELS NLSSKLL
Sbjct: 424 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLL 483

Query: 464 HLAWHPTTNLIACANGNSLFFHYA 487
           HLAWHPTT  IACA GNSL+ +YA
Sbjct: 484 HLAWHPTTKFIACAAGNSLYMYYA 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/504 (72%), Positives = 425/504 (84%), Gaps = 29/504 (5%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFER---KD 62

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
             + H SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 63  EKDWH-SRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 120

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 121 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 180

Query: 187 HLEWTE---NMAT--------------------KVYPHAHDFNINSISNNSDCETFVSAD 223
            LEWTE   NM+                     KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 181 ALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 240

Query: 224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 283
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 241 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 300

Query: 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 343
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 301 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 359

Query: 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 360 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 419

Query: 404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 463
             GIT+EA +N NRK  LQAAP+ARRSS+SNLTRG  RQA+EN SSG +ELS NLSSKLL
Sbjct: 420 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLL 479

Query: 464 HLAWHPTTNLIACANGNSLFFHYA 487
           HLAWHPTT  IACA GNSL+ +YA
Sbjct: 480 HLAWHPTTKFIACAAGNSLYMYYA 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/507 (69%), Positives = 411/507 (81%), Gaps = 30/507 (5%)

Query: 9   SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP 68
           S  L+WK SQ FGE  P E+LQDVD+VS+I F+K+GDYLAVGDRGGRV++F+   GK+TP
Sbjct: 16  SPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTP 75

Query: 69  NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128
           N  ++R+ELE+ +D   T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+  NGS
Sbjct: 76  NSFLNRNELER-LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGS 134

Query: 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188
           +FILSTNDKTIKLWKV ++K+KK++EM+H   V SEN LL E +FM+E + P   +GY+L
Sbjct: 135 LFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNL 194

Query: 189 EWTENMAT------------------------KVYPHAHDFNINSISNNSDCETFVSADD 224
           +W E +A                         KVY HAHDFNINSISNNSD ETF+S+DD
Sbjct: 195 DWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDD 254

Query: 225 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 284
           LRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMR
Sbjct: 255 LRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMR 314

Query: 285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 344
           QSA+CDHSARIL+DA E  GSKSFFTE+IASISD+KF  DGQH+L+RDYMNLKLWD+RMD
Sbjct: 315 QSAICDHSARILQDA-ECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMD 373

Query: 345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 404
           S+PVA FKIHEHLRPKL DLYN+DSIFDKFEC +SGDGLHFATGSYSN LRIFSHGVG+ 
Sbjct: 374 SSPVAVFKIHEHLRPKLSDLYNDDSIFDKFECCISGDGLHFATGSYSNNLRIFSHGVGNE 433

Query: 405 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ----AHENSSSGHHELSYNLSS 460
            GIT+EA KN NR+ IL +  R RRSSLSN+ RG YRQ     HEN  SG +E S NLSS
Sbjct: 434 EGITIEASKNPNRRSILHSTSRPRRSSLSNMARGFYRQVDYVGHENYRSGSNEFSCNLSS 493

Query: 461 KLLHLAWHPTTNLIACANGNSLFFHYA 487
           KLLHLAWHPTTN IACA+GNSL  ++A
Sbjct: 494 KLLHLAWHPTTNFIACASGNSLLMYHA 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/497 (73%), Positives = 414/497 (83%), Gaps = 25/497 (5%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK SQ FGER P E++QD D+VSAIEFDK+GDYLAVGDRGGRV++FE    K+TPNQ+
Sbjct: 14  LEWKFSQVFGERIPGEDVQDADVVSAIEFDKSGDYLAVGDRGGRVVIFERKDRKDTPNQY 73

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            SR+ELE  +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FI
Sbjct: 74  NSRNELE-TLDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFI 132

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWKV++ K KK+KE+D    V SE+ LLAE++F+ E   PS  +GYHL WT
Sbjct: 133 LSTNDKTIKLWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWT 190

Query: 192 ENMAT---------------------KVYPHAHDFNINSISNNSDCETFVSADDLRINLW 230
           EN ++                     KVY HAHDFNINSISNNSD ETF+SADDLRINLW
Sbjct: 191 ENNSSPFQEGHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLW 250

Query: 231 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 290
           NLEISDQCFNI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD
Sbjct: 251 NLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCD 310

Query: 291 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 350
            SARIL+DA E  GSKSFFTEIIASISD+KF NDG H+LSRDYMNLKLWDIRMD  P++ 
Sbjct: 311 QSARILQDA-ECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPLPISI 369

Query: 351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 410
           FKIHEHLRPKL DLYNNDSIFDKFEC +SGDGLHFATGSYSNLLRIFS+GVGS  GITVE
Sbjct: 370 FKIHEHLRPKLSDLYNNDSIFDKFECCISGDGLHFATGSYSNLLRIFSYGVGSENGITVE 429

Query: 411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT 470
           A KN NRK + ++  RARRSSLSNLTRG Y   +ENSSSG +E S +L+SKLLHLAWHPT
Sbjct: 430 ASKNPNRKSLPRSTSRARRSSLSNLTRGFYWHGNENSSSGGNEFSCDLTSKLLHLAWHPT 489

Query: 471 TNLIACANGNSLFFHYA 487
           TN+IAC++GNSL+ +YA
Sbjct: 490 TNMIACSSGNSLYMYYA 506

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/516 (64%), Positives = 398/516 (77%), Gaps = 31/516 (6%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENM------------------------ATKVYPHAHDFNINSISNNSDC 216
           S ++G H   +ENM                          KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 217 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 336
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 396
           KLWDI   S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSYSN LR+
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNHLRM 418

Query: 397 FSHGVGSAGGITVEAGKNENRKPILQ-----AAPRARRSSLSNLTRGLYRQAHENSSSGH 451
           FS+G GS+ GIT E GK  +R+P LQ        RARRSSLSNLTR  +R   E+SSS  
Sbjct: 419 FSYGSGSSEGITTEVGKFPDRRPHLQITRQATTRRARRSSLSNLTRDFFRHGSEHSSSDG 478

Query: 452 HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487
            E S +L+SKLLHLAWHP+ NLIACA G+ LF +YA
Sbjct: 479 SETSVDLNSKLLHLAWHPSENLIACAAGSGLFVYYA 514

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 315/512 (61%), Positives = 382/512 (74%), Gaps = 31/512 (6%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M  N + +SA L WK SQ  G+R P+E LQ+ DI++A+ F+K GDYLAVGDRGGRV++FE
Sbjct: 1   MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
               K   +    R ELE Q DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VR
Sbjct: 61  RDDRKKNVSIANDRRELE-QRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVR 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           W  + +   FILSTNDKTIKLWKV++ KVK++KEM   P + SEN LLAE++F+      
Sbjct: 120 WWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLE 175

Query: 181 SFAHGYHLEWTENM------------------------ATKVYPHAHDFNINSISNNSDC 216
           + A+GYHLEW E                            KVY +AH FNINSISNNSD 
Sbjct: 176 TTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDY 235

Query: 217 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 276
           ETF+SADDLRINLWNLE+SDQCFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+G
Sbjct: 236 ETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQG 295

Query: 277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 336
           F+RL D+RQ+A+CDH++R+ +   ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+
Sbjct: 296 FIRLSDLRQAAICDHASRMFQHG-ESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNM 354

Query: 337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 396
           KLWD+RM+S+PVA FKIHEHLRPKL +LYNND IFDKFEC  SGDGLHFATGSYSN++RI
Sbjct: 355 KLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRI 414

Query: 397 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQAHENSSSGHHELS 455
           FS G      I +E   N +RK I QA  R RR SLSNL  R +Y+ AH +S S   + S
Sbjct: 415 FSPGSERKEEIKLEIRGNSHRKVIHQAKSRVRRPSLSNLIPREIYQHAHTDSESSRADFS 474

Query: 456 YNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487
            NLSSKLLH+AWHPT NL+ CA  +SL  +YA
Sbjct: 475 CNLSSKLLHVAWHPTCNLVVCAAESSLVLYYA 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/504 (58%), Positives = 366/504 (72%), Gaps = 36/504 (7%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK +Q FGER   EE+Q+VDI+SAIEFD+TGD+LA GDRGGRV+LFE     +T +  
Sbjct: 26  LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERT---DTRDHG 82

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            +R +LE+ MDF    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC + NG++F+
Sbjct: 83  GNRRDLER-MDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFL 141

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP------------ 179
           LSTNDKTIK WKV+++KVKKI +M+  P  ++ N  L   +      P            
Sbjct: 142 LSTNDKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPSISTSSKPYTANGGCLDKPL 201

Query: 180 ---------PSFAHGYHLEWTENMAT-------KVYPHAHDFNINSISNNSDCETFVSAD 223
                    P      HL    ++ T       ++Y HAHD++INSISNNSD ETF+SAD
Sbjct: 202 GLSNDFSFPPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISAD 261

Query: 224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 283
           DLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSSRG +RLVDM
Sbjct: 262 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDM 321

Query: 284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 343
           RQSALCD  +++  +  E  GS+SFFTEIIASISDIKFA DG+++LSRDYM LKLWDI M
Sbjct: 322 RQSALCDSHSKLFEEQ-EVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINM 380

Query: 344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 403
           DS PV+TF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS
Sbjct: 381 DSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGS 440

Query: 404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 463
               T+EA KN  R+ + Q   R  R SL  L+RG +R+  + S +  +  +++ ++KLL
Sbjct: 441 TEATTLEASKNPMRRQV-QTPSRPSR-SLGTLSRG-FRRGADTSGADTNGNAFDFTTKLL 497

Query: 464 HLAWHPTTNLIACANGNSLFFHYA 487
           HLAWHPT N +ACA  NSL+ +YA
Sbjct: 498 HLAWHPTENSLACAASNSLYMYYA 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/518 (57%), Positives = 373/518 (72%), Gaps = 40/518 (7%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           +++  EE    LEWK SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE
Sbjct: 7   VVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 66

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
               K+   QH SRS+LE+ MD++   HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 67  RTDSKD---QHGSRSDLER-MDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIK 122

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD--------------------HFPF 160
           WC   NG++F+LSTNDKTIK WKV+++KVKKI +M+                      P 
Sbjct: 123 WCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKPH 182

Query: 161 VSSENTLLAEKNFMNEHNPPSFAHG-----------YHLEWTENMATKVYPHAHDFNINS 209
           ++  N   ++K++    N  SF  G            H         +VY HAHD++INS
Sbjct: 183 LA--NGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVVSHETSLLARCRRVYAHAHDYHINS 240

Query: 210 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269
           ISNNSD ETF+SADDLRINLWNLEIS Q FNIVD+KP+NM+DLTEVITSAEFHP +CN L
Sbjct: 241 ISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTL 300

Query: 270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329
           AYSSS+G +RLVD+RQSALCD  A++  +  E+ GS+SFFTEIIASISDIKFA DG+++L
Sbjct: 301 AYSSSKGSIRLVDLRQSALCDSHAKLFEEQ-EAPGSRSFFTEIIASISDIKFAKDGRYIL 359

Query: 330 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389
           SRDYM LKLWDI MDS PVAT+++HEHLRP+LCDLY NDSIFDKFEC +SGDG   +TGS
Sbjct: 360 SRDYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGS 419

Query: 390 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS 449
           YSNL R+F    GS    T+EA KN  R+ +   + R  RS  +++TR + R+  EN+S 
Sbjct: 420 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPS-RPSRSIGNSITR-VVRRGAENTSV 477

Query: 450 GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 487
             +  S++ ++KLLHLAWHP+ N IACA  NSL+ +YA
Sbjct: 478 DANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 515

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685484|ref|NP_849681.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191506|gb|AEE29627.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/495 (59%), Positives = 371/495 (74%), Gaps = 27/495 (5%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query: 71  HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
             SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct: 72  GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEK--NFMNE--HNP 179
           +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K  +++++    P
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query: 180 PSFAHGYHLEWTENMAT-------KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL 232
           P       L    +  T       +VY HAHD++INSISN+SD ETF+SADDLR+NLWNL
Sbjct: 190 PGGIPSLRLPVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNL 249

Query: 233 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 292
           EIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALCD  
Sbjct: 250 EISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSH 309

Query: 293 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 352
            ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA+++
Sbjct: 310 TKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQ 368

Query: 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 412
           +HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA 
Sbjct: 369 VHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEAS 428

Query: 413 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN 472
           KN  R+ I   A  +R  S+ ++TR + R+  E+  +  +  +Y+ ++KLLH+AWHPT N
Sbjct: 429 KNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHPTEN 485

Query: 473 LIACANGNSLFFHYA 487
            IACA  NSL+ +YA
Sbjct: 486 SIACAAANSLYMYYA 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212274793|ref|NP_001130293.1| uncharacterized protein LOC100191387 [Zea mays] gi|194688766|gb|ACF78467.1| unknown [Zea mays] gi|413950526|gb|AFW83175.1| hypothetical protein ZEAMMB73_989132 [Zea mays]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 294/493 (59%), Positives = 372/493 (75%), Gaps = 30/493 (6%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEW+ SQ FGER+  EE+Q+VDI+SAIEF+K+G +LA GDRGGRV+LFE    K+    H
Sbjct: 35  LEWRFSQVFGERSAGEEVQEVDIISAIEFNKSGHHLATGDRGGRVVLFERTDVKD----H 90

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
             R + EK  D + + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC A NG++++
Sbjct: 91  ACRKDAEK-ADHSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINQIKWCQAANGALYL 149

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE-- 189
           LSTNDKTIK WKV+++KVKK+ EM+     +  N       +++    PS ++G  L+  
Sbjct: 150 LSTNDKTIKFWKVQEKKVKKLSEMNLDRSAAPANGSPGGVGYLS----PSLSNGNALKPG 205

Query: 190 ------------WTENMAT---KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 234
                          ++AT   +VY HAHD++INSISNNSD ETF+SADDLRINLWNLEI
Sbjct: 206 RLPLLRLPVVTSQETSLATSCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEI 265

Query: 235 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 294
           S+Q FNI+D+KP+NM+DLTEVITSAEFHP +CN LAYSSS+G +RLVD+RQSALCD   +
Sbjct: 266 SNQSFNIIDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDTHYQ 325

Query: 295 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH 354
           I  +  E+ GS+SFFTEIIASISDIKF+ DG+HLLSRDYM LKLWD++M+S PVATF++H
Sbjct: 326 IF-EQHEAPGSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDVKMNSGPVATFQVH 384

Query: 355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 414
           E+LRPKLCDLY NDSIFDKFEC  SGDGL  ATGSYSN+ R+F  G G++   T+EA +N
Sbjct: 385 EYLRPKLCDLYENDSIFDKFECCQSGDGLRVATGSYSNIFRVFGCGTGNSEATTLEATRN 444

Query: 415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI 474
             R+  LQ   RA R SLS+LTR + R+  E++    +  SY+LS+KLLHLAWHP+ NLI
Sbjct: 445 PTRRQ-LQNPTRATR-SLSSLTRAV-RRGGESTGIDVNGNSYDLSTKLLHLAWHPSENLI 501

Query: 475 ACANGNSLFFHYA 487
           ACA  NSL+ +YA
Sbjct: 502 ACAAANSLYMYYA 514

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.954	0.928	0.488	5.2e-113
CGD|CAL0004658	519	orf19.1468 [Candida albicans (	0.634	0.595	0.490	9.1e-103
ASPGD|ASPL0000046009	472	AN1545 [Emericella nidulans (t	0.907	0.936	0.437	1.3e-100
POMBASE|SPAC227.07c	463	pab1 "protein phosphatase regu	0.796	0.838	0.481	2.7e-93
WB|WBGene00006352	495	sur-6 [Caenorhabditis elegans	0.780	0.767	0.479	9.3e-91
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.749	0.816	0.465	9.6e-89
UNIPROTKB|F1MG56	457	PPP2R2A "Uncharacterized prote	0.786	0.838	0.453	1.8e-87
UNIPROTKB|E2R0J6	457	PPP2R2A "Uncharacterized prote	0.786	0.838	0.453	1.8e-87
UNIPROTKB|J9P0L7	447	PPP2R2A "Uncharacterized prote	0.786	0.856	0.453	1.8e-87
UNIPROTKB|P63151	447	PPP2R2A "Serine/threonine-prot	0.786	0.856	0.453	1.8e-87

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 244/499 (48%), Positives = 322/499 (64%)

Query:    11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV-----GGK 65
             SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE       GG 
Sbjct:    15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGS 74

Query:    66 NTPNQH----ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121
                 +     +   E   + +F S   PE+ Y    +S E E + +  +   +  N   +
Sbjct:    75 RKDLEQTDYPVRHPEFRYKTEFQS-HEPEFDY---LKSLEIE-EKINKIRWCQPANGALF 129

Query:   122 CAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK--NFMNEHN 178
               + N          +K IK  K+ +  +    E  + P     N L A+K  +++++  
Sbjct:   130 LLSTNDKTIKYWKVQEKKIK--KISEMNIDP-SESSNIPPQLVTNGLPADKGHDYLSKDF 186

Query:   179 --PPSFAHGYHL------EWTENMAT--KVYPHAHDFXXXXXXXXXDCETFVSADDLRIN 228
               PP       L      + T  +A   +VY HAHD+         D ETF+SADDLR+N
Sbjct:   187 SFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVN 246

Query:   229 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 288
             LWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSAL
Sbjct:   247 LWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSAL 306

Query:   289 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 348
             CD   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PV
Sbjct:   307 CDSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPV 365

Query:   349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 408
             A++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T
Sbjct:   366 ASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAAT 425

Query:   409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 468
             +EA KN  R+ I Q   R  RS + ++TR + R+  E+  +  +  +Y+ ++KLLH+AWH
Sbjct:   426 LEASKNPMRRQI-QTPARPSRS-IGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWH 482

Query:   469 PTTNLIACANGNSLFFHYA 487
             PT N IACA  NSL+ +YA
Sbjct:   483 PTENSIACAAANSLYMYYA 501

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)]

 Score = 822 (294.4 bits), Expect = 9.1e-103, Sum P(3) = 9.1e-103
 Identities = 155/316 (49%), Positives = 217/316 (68%)

Query:    90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
             EY++ TEFQSH+ EFDYLKSLEIEEKIN+++W  + N S+++LSTNDKTIKLWK++++++
Sbjct:    64 EYKFFTEFQSHDAEFDYLKSLEIEEKINKIKWLKSGNDSLYLLSTNDKTIKLWKIQERQI 123

Query:   150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFXXXX 209
             K + E +    ++    L +    ++    P      H +       K+Y +AH +    
Sbjct:   124 KLVSENN----LNGSTHLPSTDIGISSLKLPQLQ--LHDKLISAQPKKIYANAHAYHINS 177

Query:   210 XXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269
                  D ET++SADDLRINLWNL I+DQ FNIVD+KP+NM++LTEVITSAEFHP  CNL 
Sbjct:   178 ISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANMEELTEVITSAEFHPSQCNLF 237

Query:   270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329
              YSSS+G ++L DMR ++LCD  A+I  +  +   S +FFTEI +SISD+KF++DG+++ 
Sbjct:   238 MYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDP-SSHNFFTEITSSISDVKFSHDGRYIA 296

Query:   330 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389
             SRDYM +K+WD+ M++ P+ T  +HEHLR +LCD Y ND+IFDKFE    GD     TGS
Sbjct:   297 SRDYMTVKIWDLAMENKPLKTIDVHEHLRERLCDTYENDAIFDKFEVQFGGDNKSVMTGS 356

Query:   390 YSNLLRIFSHGVGSAG 405
             Y+N   I+ + V   G
Sbjct:   357 YNNQFVIYPNAVNKGG 372

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

ASPGD|ASPL0000046009 AN1545 [Emericella nidulans (taxid:162425)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 212/485 (43%), Positives = 300/485 (61%)

Query:    14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHIS 73
             WK +Q FG++   E++ + DI+S +EFD TG+YLA GD+GGRV+LFE             
Sbjct:    11 WKFTQCFGDKGDVEDITEADIISTVEFDHTGNYLATGDKGGRVVLFE------------- 57

Query:    74 RSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS 133
             R+E +K          EY++ TEFQSHEPEFDYLKSLEIEEKIN+++WC   N S F+LS
Sbjct:    58 RNETKKTC--------EYKFHTEFQSHEPEFDYLKSLEIEEKINKIKWCRRQNASHFLLS 109

Query:   134 TNDKTIKLWKVRDQKVKKIKE----MDHFPF-VSSENTLLAEKNFMNEHNP---PSFAHG 185
             TNDKTIKLWKV D+ +K + E     +  P  V       A +    + +    P   H 
Sbjct:   110 TNDKTIKLWKVFDKSLKVVAENNLSTELTPGGVGGGGAPRAPRVSFKDSSALKLPRMTH- 168

Query:   186 YHLEWTENMATKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMK 245
              H      +  + Y +AH +         D ETF+S+DDLR+NLWNL I DQ FNIVD+K
Sbjct:   169 -HDTVVAAVPRRTYANAHAYHINSISVNSDGETFISSDDLRVNLWNLNIQDQSFNIVDIK 227

Query:   246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 305
             P+NM++LTEVIT+AEFHP  CN   Y+SS+G ++L DMRQ ALCD   ++  +  E   S
Sbjct:   228 PANMEELTEVITAAEFHPTSCNWFMYASSKGTIKLADMRQRALCDTHHKLF-EQEEDASS 286

Query:   306 KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 365
             +SFF+EII+SISD++F++DG++++SRDY+ +K+WD+ M+  PV T  IHEHLRP+LCD Y
Sbjct:   287 RSFFSEIISSISDVRFSHDGRYIVSRDYLTVKIWDVNMERQPVKTIPIHEHLRPRLCDTY 346

Query:   366 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN--ENRK----- 418
              NDSIFDKFE   SGD  +  TGSY+N   I+         I ++A K+  + +K     
Sbjct:   347 ENDSIFDKFEVVFSGDAENVMTGSYNNNFMIYPTDPAKETEIVLQADKSAFKAKKVGVPT 406

Query:   419 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 478
             P+ + A   + +S ++   G   +  + + +   ++ +N   K+LH++WHP  + IA A 
Sbjct:   407 PMNKGANGKKSNSRTSSPAGPGSRMKKETDAD--QIDFN--KKILHMSWHPFEDSIAIAA 462

Query:   479 GNSLF 483
              N+LF
Sbjct:   463 TNNLF 467

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

POMBASE|SPAC227.07c pab1 "protein phosphatase regulatory subunit Pab1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 192/399 (48%), Positives = 256/399 (64%)

Query:    90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
             EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+LSTNDKTIKLWK+ ++ +
Sbjct:    66 EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTNDKTIKLWKLYEKNL 125

Query:   150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFXXXX 209
             K + E +     S  + +       ++   P   H  H         +VY +AH +    
Sbjct:   126 KVVAENNLSD--SFHSPMQGPLTTPSQLRLPRLNH--HDMIIAAYPRRVYANAHAYHINS 181

Query:   210 XXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269
                  D ET++SADDLRINLWNL ISD  FNIVD+KP NM++LTEVITSAEFHPI CN L
Sbjct:   182 ISVNSDAETYISADDLRINLWNLSISDHSFNIVDIKPENMEELTEVITSAEFHPINCNHL 241

Query:   270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329
              YSSS+G ++L+D+RQSALCD+  ++  D  E   SKSFF+EII+SISD+KF+ +G+++L
Sbjct:   242 MYSSSKGNIKLLDLRQSALCDNPCKLFEDQ-EDQDSKSFFSEIISSISDVKFSQNGRYIL 300

Query:   330 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389
             SRDY+ LK+WD+ M+  PV T  +H+ LR KLCDLY ND IFDKFEC+ SGD  H  +GS
Sbjct:   301 SRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFSGDDKHVLSGS 360

Query:   390 YSNLLRIF---SHGVGSAGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQAH 444
             YSN   I+   S   G  G I ++A K     RK      P+      +N  R   + A 
Sbjct:   361 YSNNFGIYPTDSSLPGDRGQIVLQADKAAFRARKSAANNVPKLNAVK-NNDWRSQPQAAM 419

Query:   445 ENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
              ++S G    + + + K+LH +WHP  + +A A  N+LF
Sbjct:   420 GSASVGLDPDNLDYNKKILHASWHPFEDSVAIAATNNLF 458

GO:0000159 "protein phosphatase type 2A complex" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISO

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IGI

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IMP

GO:0034047 "regulation of protein phosphatase type 2A activity" evidence=IC

GO:0034260 "negative regulation of GTPase activity" evidence=IGI

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IMP

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

WB|WBGene00006352 sur-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 190/396 (47%), Positives = 254/396 (64%)

Query:    90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
             EY   + FQSHEPEFDYLKSLEI+EKIN++RW    N + FILSTNDKTIKLWK+ +++ 
Sbjct:   109 EYNVYSTFQSHEPEFDYLKSLEIDEKINQIRWLKKKNAANFILSTNDKTIKLWKISERER 168

Query:   150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFXXXX 209
             K   +  + P  +  NT     +F      PS      +   E    +VY +AH +    
Sbjct:   169 KIGDDAWNLPRTNRINT----SSFRGRLQIPSIVPMELI--VEASPRRVYGNAHTYHVNS 222

Query:   210 XXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 269
                  D ETF+SADDLR+NLWNLEI+++ FNIVD+KP+NM++LTEVIT+AEFHP  CN  
Sbjct:   223 ISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANMEELTEVITAAEFHPTQCNWF 282

Query:   270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 329
              YSSS+G +RL DMR  ALCD  A+I  +  E   S+SFF+EIIAS+SD+KF+++G++LL
Sbjct:   283 VYSSSKGSIRLCDMRDRALCDAYAKIFEEP-EDPQSRSFFSEIIASVSDVKFSHNGRYLL 341

Query:   330 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 389
             +RDY+ +K+WD+ M+S PV T+ +H +LR KLC LY NDSIFDKFEC  SGD  H  TGS
Sbjct:   342 TRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSIFDKFECDWSGDDKHILTGS 401

Query:   390 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ--AAPRARRSSLSNLTRGLYRQAHENS 447
             Y NL R ++ G  +    T EA   E    +      P A+R   +NL+        E+ 
Sbjct:   402 YHNLFRSYARG-NNQDAKTWEARPQEPHSQLRSRFVVPSAKRKR-NNLSSS-GETTEEDL 458

Query:   448 SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
             SS   +L ++   K+LH AWHP  N+IA A  N+L+
Sbjct:   459 SSD--QLQFD--RKILHTAWHPKDNIIALAATNNLY 490

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040026 "positive regulation of vulval development" evidence=IGI;IMP

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 189/406 (46%), Positives = 259/406 (63%)

Query:    87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-- 144
             S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDKTIKLWK+  
Sbjct:    67 SRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISE 126

Query:   145 RDQKVK--KIKE-----MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197
             RD++V+   +K+      D F   S    +L   + M E +P                 +
Sbjct:   127 RDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP----------------RR 170

Query:   198 VYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257
             ++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM++LTEVIT
Sbjct:   171 IFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230

Query:   258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317
             +AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+EII+SIS
Sbjct:   231 AAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFSEIISSIS 289

Query:   318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 377
             D+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND IFDKFEC 
Sbjct:   290 DVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349

Query:   378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 437
              +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR         T 
Sbjct:   350 WNGSDSAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR------KVCTG 400

Query:   438 GLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
             G  ++   N  S    L +N   K+LH AWHPT N+IA A  N+L+
Sbjct:   401 GKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

UNIPROTKB|F1MG56 PPP2R2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 184/406 (45%), Positives = 257/406 (63%)

Query:    78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK 137
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDK
Sbjct:    68 EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 127

Query:   138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197
             TIKLWK+ ++     K  + +  +  E+    +   +     P F     L   E    +
Sbjct:   128 TIKLWKISERD----KRPEGYN-LKEEDGRYRDPTTVTTLRVPVF-RPMDL-MVEASPRR 180

Query:   198 VYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257
             ++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM++LTEVIT
Sbjct:   181 IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 240

Query:   258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317
             +AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+EII+SIS
Sbjct:   241 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSIS 299

Query:   318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 377
             D+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND IFDKFEC 
Sbjct:   300 DVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 359

Query:   378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 437
              +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +S      
Sbjct:   360 WNGSDSVVMTGSYNNFFRMFDRN--TKRDITLEASR-ENNKPRTVLKPRKVCAS------ 410

Query:   438 GLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
             G  R+  E S      L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   411 GK-RKKDEISVDS---LDFN--KKILHTAWHPKENIIAVATTNNLY 450

GO:0043278 "response to morphine" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|E2R0J6 PPP2R2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 184/406 (45%), Positives = 257/406 (63%)

Query:    78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK 137
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDK
Sbjct:    68 EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 127

Query:   138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197
             TIKLWK+ ++     K  + +  +  E+    +   +     P F     L   E    +
Sbjct:   128 TIKLWKISERD----KRPEGYN-LKEEDGRYRDPTTVTTLRVPVF-RPMDL-MVEASPRR 180

Query:   198 VYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257
             ++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM++LTEVIT
Sbjct:   181 IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 240

Query:   258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317
             +AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+EII+SIS
Sbjct:   241 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSIS 299

Query:   318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 377
             D+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND IFDKFEC 
Sbjct:   300 DVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 359

Query:   378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 437
              +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +S      
Sbjct:   360 WNGSDSVVMTGSYNNFFRMFDRN--TKRDITLEASR-ENNKPRTVLKPRKVCAS------ 410

Query:   438 GLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
             G  R+  E S      L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   411 GK-RKKDEISVDS---LDFN--KKILHTAWHPKENIIAVATTNNLY 450

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|J9P0L7 PPP2R2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 184/406 (45%), Positives = 257/406 (63%)

Query:    78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK 137
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDK
Sbjct:    58 EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117

Query:   138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197
             TIKLWK+ ++     K  + +  +  E+    +   +     P F     L   E    +
Sbjct:   118 TIKLWKISERD----KRPEGYN-LKEEDGRYRDPTTVTTLRVPVF-RPMDL-MVEASPRR 170

Query:   198 VYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257
             ++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM++LTEVIT
Sbjct:   171 IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230

Query:   258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317
             +AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+EII+SIS
Sbjct:   231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSIS 289

Query:   318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 377
             D+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND IFDKFEC 
Sbjct:   290 DVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349

Query:   378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 437
              +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +S      
Sbjct:   350 WNGSDSVVMTGSYNNFFRMFDRN--TKRDITLEASR-ENNKPRTVLKPRKVCAS------ 400

Query:   438 GLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
             G  R+  E S      L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   401 GK-RKKDEISVDS---LDFN--KKILHTAWHPKENIIAVATTNNLY 440

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P63151 PPP2R2A "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 184/406 (45%), Positives = 257/406 (63%)

Query:    78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK 137
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDK
Sbjct:    58 EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117

Query:   138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197
             TIKLWK+ ++     K  + +  +  E+    +   +     P F     L   E    +
Sbjct:   118 TIKLWKISERD----KRPEGYN-LKEEDGRYRDPTTVTTLRVPVF-RPMDL-MVEASPRR 170

Query:   198 VYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 257
             ++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM++LTEVIT
Sbjct:   171 IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230

Query:   258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 317
             +AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+EII+SIS
Sbjct:   231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSIS 289

Query:   318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 377
             D+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND IFDKFEC 
Sbjct:   290 DVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349

Query:   378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 437
              +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +S      
Sbjct:   350 WNGSDSVVMTGSYNNFFRMFDRN--TKRDITLEASR-ENNKPRTVLKPRKVCAS------ 400

Query:   438 GLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
             G  R+  E S      L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   401 GK-RKKDEISVDS---LDFN--KKILHTAWHPKENIIAVATTNNLY 440

GO:0007165 "signal transduction" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.5717	0.9466	0.8780	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.5907	0.9609	0.9341	yes	no
Q54Q99	PH2AB_DICDI	No assigned EC number	0.4413	0.9199	0.9275	yes	no
Q6DIY3	2ABD_XENTR	No assigned EC number	0.4481	0.8685	0.9463	yes	no
P36872	2ABA_DROME	No assigned EC number	0.4376	0.8788	0.8577	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.4465	0.8439	0.9647	yes	no
Q66LE6	2ABD_HUMAN	No assigned EC number	0.4398	0.8685	0.9337	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.4785	0.8850	0.9308	yes	no
P56932	2ABD_RAT	No assigned EC number	0.4398	0.8685	0.9337	yes	no
P63150	2ABA_RABIT	No assigned EC number	0.4419	0.8685	0.9463	yes	no
Q5ZIY5	2ABD_CHICK	No assigned EC number	0.4377	0.8685	0.9379	yes	no
Q6NY64	2ABD_DANRE	No assigned EC number	0.4377	0.8685	0.9463	yes	no
A2X2K3	2ABB_ORYSI	No assigned EC number	0.5717	0.9466	0.8780	N/A	no
Q925E7	2ABD_MOUSE	No assigned EC number	0.4398	0.8685	0.9337	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	487
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-131
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-04

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  387 bits (995), Expect = e-131
 Identities = 203/478 (42%), Positives = 278/478 (58%), Gaps = 36/478 (7%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
             K  Q FG++       + D ++A+EFD+TG YLA GD+GGRV+LFE            
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFE------------ 54

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R +             EY++ TEFQSHE EFDYLKSLEIEEKIN + W      + F+L
Sbjct: 55  -REKSY---------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSS--ENTLLAEKNFMNEHNPPSFAHGYHLEW 190
           STNDKTIKLWK+ ++ +K + E +      S     L + K  +     P  +   H E 
Sbjct: 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLL----PRLSE--HDEI 158

Query: 191 TENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 250
                 +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D  FNIVD+KP NM+
Sbjct: 159 IAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNME 218

Query: 251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 310
           +LTEVITSAEFHP  CN+  YSSS+G ++L D+RQSALCD+S ++            FF 
Sbjct: 219 ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFE 277

Query: 311 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 370
           EI++SISD KF+++G+++LSRDY+ +K+WD+ M   P+ T  +H  L  +L D+Y ND+I
Sbjct: 278 EIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337

Query: 371 FDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKN-ENRKPILQAAPR 426
           FDKFE S SGD  H  +GSYSN   I+   S G    G +   A  + E+ K   +    
Sbjct: 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNV 397

Query: 427 ARRSSLSNLTRGLYRQAHENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 483
            ++  L N        + +    +     + +L  K+LH +WHP  + +A A  N+LF
Sbjct: 398 EKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSWHPFEDSVAIAATNNLF 455

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 62/370 (16%), Positives = 111/370 (30%), Gaps = 136/370 (36%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
             V+ + F   G  LA G   G + +++   G                            
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---------------------------E 42

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
                + H               +  V   A  +G+     ++DKTI+LW +   +    
Sbjct: 43  LLRTLKGHT------------GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECV-- 86

Query: 153 KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISN 212
                        TL                                   H   ++S++ 
Sbjct: 87  ------------RTL---------------------------------TGHTSYVSSVAF 101

Query: 213 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271
           + D     S+  D  I +W++E       +      + D     + S  F P        
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTL----RGHTDW----VNSVAFSP--DGTFVA 151

Query: 272 SSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL- 329
           SSS+ G ++L D+R +  C  +                 T     ++ + F+ DG+ LL 
Sbjct: 152 SSSQDGTIKLWDLR-TGKCVAT----------------LTGHTGEVNSVAFSPDGEKLLS 194

Query: 330 -SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 388
            S D   +KLWD+      + T + HE            + +      + S DG   A+G
Sbjct: 195 SSSD-GTIKLWDLSTGKC-LGTLRGHE------------NGV---NSVAFSPDGYLLASG 237

Query: 389 SYSNLLRIFS 398
           S    +R++ 
Sbjct: 238 SEDGTIRVWD 247

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 72/399 (18%), Positives = 137/399 (34%), Gaps = 53/399 (13%)

Query: 83  FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLW 142
            + +        ++     P+   L     E+ I  + +  +P+G + +  ++D TIKLW
Sbjct: 35  SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF--SPDGELLLSGSSDGTIKLW 92

Query: 143 KVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAHGYHLEWTENMATKVY 199
            + + +   K  E  H   VS       + N +   +         + L     +   + 
Sbjct: 93  DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152

Query: 200 PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 259
            H+      + S +       S+ D  I LW+L              S +   T+ ++S 
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--------STLAGHTDPVSSL 204

Query: 260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 319
            F P    L+A  SS G +RL D+    L                  +      + +S  
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLL---------------RSTLSGHSDSVVSS- 248

Query: 320 KFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 378
            F+ DG  L S      ++LWD+R  S+ + T   H            + S+      + 
Sbjct: 249 -FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH------------SSSVLS---VAF 292

Query: 379 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI--LQAAPRARRSSLSNLT 436
           S DG   A+GS    +R++       G +        +  P+  L  +P           
Sbjct: 293 SPDGKLLASGSSDGTVRLWD---LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 437 RGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA 475
            G  R    +  +G    +    S +L +++ P   +++
Sbjct: 350 DGTIR--LWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVS 386

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	487
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
PTZ00421	493	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
KOG2315	566	consensus Predicted translation initiation factor	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
PRK00178	430	tolB translocation protein TolB; Provisional	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
KOG2314	698	consensus Translation initiation factor 3, subunit	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.31
KOG2315	566	consensus Predicted translation initiation factor	99.3
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.23
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.15
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.14
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.14
COG4946	668	Uncharacterized protein related to the periplasmic	99.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.09
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.06
PRK04043	419	tolB translocation protein TolB; Provisional	99.06
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.02
PRK04043	419	tolB translocation protein TolB; Provisional	98.95
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.94
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.9
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.9
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.88
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.87
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.8
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.75
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.75
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.63
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.59
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.57
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.53
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.53
KOG2695	425	consensus WD40 repeat protein [General function pr	98.51
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.47
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.45
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.41
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.4
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.34
KOG3621	726	consensus WD40 repeat-containing protein [General	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.2
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.19
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.15
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.13
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.12
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.1
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.08
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.98
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.95
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.91
PRK02888	635	nitrous-oxide reductase; Validated	97.88
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.87
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.84
PRK02888	635	nitrous-oxide reductase; Validated	97.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.58
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.57
KOG2395	644	consensus Protein involved in vacuole import and d	97.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.42
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.36
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.35
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.29
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.28
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.22
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.18
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.05
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.01
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.99
COG3391	381	Uncharacterized conserved protein [Function unknow	96.92
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.85
PRK13616	591	lipoprotein LpqB; Provisional	96.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.76
KOG2395	644	consensus Protein involved in vacuole import and d	96.75
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.54
PRK13616	591	lipoprotein LpqB; Provisional	96.51
COG3391	381	Uncharacterized conserved protein [Function unknow	96.49
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.47
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.26
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.17
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.08
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.92
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.87
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.82
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.71
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.62
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.43
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.26
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.18
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.11
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.11
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.11
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.1
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.07
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.97
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.9
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.84
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.8
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.67
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.42
KOG2444	238	consensus WD40 repeat protein [General function pr	94.14
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.06
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.91
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.87
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.82
PRK13684	334	Ycf48-like protein; Provisional	93.8
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.46
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.3
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.3
COG5167	776	VID27 Protein involved in vacuole import and degra	93.25
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.22
COG5167	776	VID27 Protein involved in vacuole import and degra	93.11
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	92.94
KOG2444	238	consensus WD40 repeat protein [General function pr	92.82
PHA02713	557	hypothetical protein; Provisional	92.68
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.57
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.39
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.24
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.16
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.95
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.32
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.21
PHA02713	557	hypothetical protein; Provisional	90.18
COG4590	733	ABC-type uncharacterized transport system, permeas	90.17
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.82
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.35
PRK13684	334	Ycf48-like protein; Provisional	88.7
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.64
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.34
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	88.25
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.05
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.99
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.76
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.65
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.57
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.33
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	87.14
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.07
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.78
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.71
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	86.71
KOG2247	615	consensus WD40 repeat-containing protein [General	85.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.44
COG4590	733	ABC-type uncharacterized transport system, permeas	85.26
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	85.25
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.57
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.02
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.5
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.46
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	82.29
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	81.3
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	80.65
KOG2247	615	consensus WD40 repeat-containing protein [General	80.47

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-53  Score=361.24  Aligned_cols=323  Identities=17%  Similarity=0.285  Sum_probs=282.8

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..-+|.++|.|++|+|+|..||+|+.|.++|+||+.+...                           ..+.++|.     
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---------------------------~~t~KgH~-----  157 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---------------------------LFTCKGHK-----  157 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---------------------------ceeecCCc-----
Confidence            3456999999999999999999999999999999998765                           58899999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.||+|  +|||+.||+|+.||+|++||..+++....                                  
T Consensus       158 -------~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~----------------------------------  194 (480)
T KOG0271|consen  158 -------NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGR----------------------------------  194 (480)
T ss_pred             -------cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccc----------------------------------
Confidence                   99999999  68999999999999999999998875432                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCC-----CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                  .+.+|...|++++|.|     ..++||++ .||.|+|||+. .+.++..       +.+|..+|+|+.
T Consensus       195 ------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~-------lsgHT~~VTCvr  254 (480)
T KOG0271|consen  195 ------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRT-------LSGHTASVTCVR  254 (480)
T ss_pred             ------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEE-------eccCccceEEEE
Confidence                        1489999999999965     67899999 99999999999 5556543       689999999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc-----------CCC----
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-----------NDG----  325 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s-----------~~~----  325 (487)
                      |--+|  +|++|+.|++|++|+...|.++    +.+.+|             ..+|+.++.+           |.+    
T Consensus       255 wGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkGH-------------ahwvN~lalsTdy~LRtgaf~~t~~~~~  315 (480)
T KOG0271|consen  255 WGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKGH-------------AHWVNHLALSTDYVLRTGAFDHTGRKPK  315 (480)
T ss_pred             EcCCc--eEEecCCCceEEEEEccchhHH----Hhhccc-------------chheeeeeccchhhhhccccccccccCC
Confidence            98775  9999999999999999998877    777775             6677777766           223    


Q ss_pred             ---------------------CEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC
Q 011368          326 ---------------------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  383 (487)
Q Consensus       326 ---------------------~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  383 (487)
                                           +.|++|+| .++.+|+-....+++..+.+|...+               ..+.||||++
T Consensus       316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV---------------n~V~fSPd~r  380 (480)
T KOG0271|consen  316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV---------------NHVSFSPDGR  380 (480)
T ss_pred             ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe---------------eeEEECCCcc
Confidence                                 34999976 9999999877677999999999876               6999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCC
Q 011368          384 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSS  460 (487)
Q Consensus       384 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~  460 (487)
                      +||+++.|.+|++|+-.+|+ .+..+.+|-.+|++++++.  |.++     |++|+.|.. ++|  +..++...+.+|.+
T Consensus       381 ~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYqvawsa--DsRL-----lVS~SkDsTLKvw~V~tkKl~~DLpGh~D  452 (480)
T KOG0271|consen  381 YIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSA--DSRL-----LVSGSKDSTLKVWDVRTKKLKQDLPGHAD  452 (480)
T ss_pred             EEEEeecccceeeeeCCCcc-hhhhhhhccceeEEEEecc--CccE-----EEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence            99999999999999999995 4889999999999999998  6777     999999999 999  45566778889999


Q ss_pred             CeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          461 KLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       461 ~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      .|..+.|+|||..+++|+.|. +++|.
T Consensus       453 EVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  453 EVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999776 55664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-50  Score=335.93  Aligned_cols=428  Identities=51%  Similarity=0.822  Sum_probs=353.5

Q ss_pred             cccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccC
Q 011368            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (487)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (487)
                      ....+.|+|.|.++..     +...+.|.++.|...|.+||+|+.+|.|.++.-+....                     
T Consensus         6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~---------------------   59 (433)
T KOG1354|consen    6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK---------------------   59 (433)
T ss_pred             cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc---------------------
Confidence            3456789999998844     55677899999999999999999999999998543321                     


Q ss_pred             CCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (487)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (487)
                       .++++...++.|+++|+|+++++++++|+.++|++..+...++..+.|++|++|.+........ ..+..         
T Consensus        60 -~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~---------  128 (433)
T KOG1354|consen   60 -GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLP---------  128 (433)
T ss_pred             -cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-ccccc---------
Confidence             2788999999999999999999999999999999777778899999999999999986544331 10100         


Q ss_pred             ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCC
Q 011368          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS  247 (487)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~  247 (487)
                       ..+...................-...|++.+...|...|++|+++.|.+.+++++|-.|.+|+++...+++.+++++|.
T Consensus       129 -~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~  207 (433)
T KOG1354|consen  129 -EEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPA  207 (433)
T ss_pred             -ccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEcccc
Confidence             0000000000011111111223456788999899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368          248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  327 (487)
Q Consensus       248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~  327 (487)
                      .++.....|++..|+|..+++++.++..|+|++.|+++..++..+.+.|+. +..|..+.+|.+....|..+.|+++|+|
T Consensus       208 nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIsSISDvKFs~sGry  286 (433)
T KOG1354|consen  208 NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIISSISDVKFSHSGRY  286 (433)
T ss_pred             CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhhhhhceEEccCCcE
Confidence            999999999999999999899999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          328 LLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       328 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      |++.+.-+|++||+....+++..++.|.....++|.+|++|++++.+.++|+.++.+++||+..+..+++++..|.....
T Consensus       287 ilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~  366 (433)
T KOG1354|consen  287 ILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF  366 (433)
T ss_pred             EEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceee
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999998877777


Q ss_pred             EEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368          408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  487 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~  487 (487)
                      ++.+.......-...   ..+.     .++++.+..     .+......++...|.+.+|||..+.||++..+++|||++
T Consensus       367 tl~asr~~~~~~~~~---k~~~-----V~~~g~r~~-----~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~~  433 (433)
T KOG1354|consen  367 TLEASRKNMKPRKVL---KLRL-----VSSSGKRKR-----DEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQD  433 (433)
T ss_pred             cccccccCCcccccc---ccee-----eecCCCccc-----cccccchhhhhhHHHhhccCCccceeeeeecCceEEecC
Confidence            777776653222111   1111     445544433     112334567888999999999999999999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-46  Score=320.21  Aligned_cols=286  Identities=21%  Similarity=0.300  Sum_probs=247.1

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      -++.-+.+|..+.|++|++.||||+-+|.++||+..+...                           +.+|.||.     
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------------~~~l~gH~-----  217 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------------LQTLRGHT-----  217 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------------eEEEeccc-----
Confidence            3455678999999999999999999999999999876643                           68999999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|.++.|+|-.++..+++|+.||++++|++.+...+..                                  
T Consensus       218 -------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~----------------------------------  256 (459)
T KOG0272|consen  218 -------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD----------------------------------  256 (459)
T ss_pred             -------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh----------------------------------
Confidence                   899999998754577899999999999999988654433                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   +.+|...|..++|+|+|++|+++ .|.+-++||+++.....        -.++|...|.+++|+|+|
T Consensus       257 -------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--------~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  257 -------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL--------LQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             -------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH--------hhcccccccceeEecCCC
Confidence                         48999999999999999999999 99999999999655433        357999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       .++++|+.|..-+|||+++++.+    ..+.+             |..+|.+|.|+|+|..|++|+ |++++|||++. 
T Consensus       316 -SL~~tGGlD~~~RvWDlRtgr~i----m~L~g-------------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-  376 (459)
T KOG0272|consen  316 -SLAATGGLDSLGRVWDLRTGRCI----MFLAG-------------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-  376 (459)
T ss_pred             -ceeeccCccchhheeecccCcEE----EEecc-------------cccceeeEeECCCceEEeecCCCCcEEEeeecc-
Confidence             99999999999999999999865    66666             588999999999999999985 79999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                      ...+..+.+|.+.+               +.+.|+| .|.+|+|++.|++++||.-.+... .                 
T Consensus       377 r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~-----------------  423 (459)
T KOG0272|consen  377 RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-L-----------------  423 (459)
T ss_pred             cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCccc-c-----------------
Confidence            88899999999877               5899999 789999999999999999876622 2                 


Q ss_pred             CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEeC
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHYA  487 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~~  487 (487)
                                                   ..+.+|+.+|.+++.+||+..|++++. +.+.+|++
T Consensus       424 -----------------------------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  424 -----------------------------KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             -----------------------------hhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence                                         234567778888888888888888884 45778863

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-45  Score=310.94  Aligned_cols=285  Identities=16%  Similarity=0.227  Sum_probs=247.6

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|..-|.|++|+|||+.||+|+.||+|++||..++++.                          ...|.+|.       
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--------------------------g~~l~gH~-------  200 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--------------------------GRALRGHK-------  200 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc--------------------------cccccCcc-------
Confidence            458899999999999999999999999999999988764                          57799999       


Q ss_pred             ccccccceeEEEEEe---cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          109 SLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                           ..|++++|.|   .|...+|++++.||.|+|||+..+.....                                 
T Consensus       201 -----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~---------------------------------  242 (480)
T KOG0271|consen  201 -----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT---------------------------------  242 (480)
T ss_pred             -----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---------------------------------
Confidence                 9999999987   56778999999999999999998876554                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--  262 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--  262 (487)
                                    +.+|+.+|+|++|--+| +|++| .|++|++|+... +.+.+       .+.+|...|+.++.+  
T Consensus       243 --------------lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~r-------~lkGHahwvN~lalsTd  299 (480)
T KOG0271|consen  243 --------------LSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLCR-------ELKGHAHWVNHLALSTD  299 (480)
T ss_pred             --------------eccCccceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHHH-------hhcccchheeeeeccch
Confidence                          48999999999998655 88999 999999999984 44443       578999999988876  


Q ss_pred             ---------cCC------------------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccc
Q 011368          263 ---------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  309 (487)
Q Consensus       263 ---------p~~------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  309 (487)
                               |.+                        +..|++|++|.++.+|+....+..                ...+
T Consensus       300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp----------------i~rm  363 (480)
T KOG0271|consen  300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP----------------ITRM  363 (480)
T ss_pred             hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc----------------hhhh
Confidence                     223                        135999999999999987654311                2224


Q ss_pred             cccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE
Q 011368          310 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  388 (487)
Q Consensus       310 ~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg  388 (487)
                      .+|..-|+.+.||||++++|+++ |..|++||.++ ++.+..|++|-..+               ..++||.|.++|++|
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------YqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVAWSADSRLLVSG  427 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEEeccCccEEEEc
Confidence            56789999999999999999998 69999999998 99999999999865               599999999999999


Q ss_pred             cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCC
Q 011368          389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      +.|.++++|++++. .....|.+|.+.|..+.++|  +|..     .++|+.|.. ++|.
T Consensus       428 SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwsp--DG~r-----V~sggkdkv~~lw~  479 (480)
T KOG0271|consen  428 SKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSP--DGQR-----VASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceEEEEEeeee-eecccCCCCCceEEEEEecC--CCce-----eecCCCceEEEeec
Confidence            99999999999987 56889999999999999999  7777     899999998 8884

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-41  Score=281.15  Aligned_cols=445  Identities=43%  Similarity=0.660  Sum_probs=337.8

Q ss_pred             hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcc
Q 011368           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (487)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (487)
                      ..|+++|+||++.........+.|+++.|...|.||++|...|.|.+|.-+...                      +.++
T Consensus         6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~cey   63 (460)
T COG5170           6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCEY   63 (460)
T ss_pred             hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc----------------------ccch
Confidence            469999999999888888889999999999999999999999999999855332                      3388


Q ss_pred             eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      ++.+.|++|+.+|+|++++++++.|..+.|+-......++..+.|++|++|.+....++.+...+...     .++++-+
T Consensus        64 kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~-----~~~~~~~  138 (460)
T COG5170          64 KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD-----SFHSPMG  138 (460)
T ss_pred             hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc-----ccccccC
Confidence            99999999999999999999999999999985444567888899999999999887665554443322     2233332


Q ss_pred             ccccccC-CCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          172 NFMNEHN-PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                      ..+.+.. ...........+-...+.+.+...|...|++++++.|.+.+++++|-.|.+|+++....++.+++++|..++
T Consensus       139 g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nme  218 (460)
T COG5170         139 GPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNME  218 (460)
T ss_pred             CCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHH
Confidence            2221111 000111111112234566667789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      .....|++..|+|..+..+..++..|.|++-|+++..++....+.+.. ...+.....+.+....|..+.|+++|+|+++
T Consensus       219 eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSISD~kFs~ngryIls  297 (460)
T COG5170         219 ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSISDFKFSDNGRYILS  297 (460)
T ss_pred             HHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence            888999999999998889999999999999999999888877777777 5666667778888899999999999999999


Q ss_pred             EeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc----ee
Q 011368          331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GG  406 (487)
Q Consensus       331 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~----~~  406 (487)
                      .+..+|++||.+....++.++..|......+++.|++|++++...+.||.|.+.+++|+..+..-+|-..+.+.    .+
T Consensus       298 RdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~v  377 (460)
T COG5170         298 RDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHV  377 (460)
T ss_pred             eccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEE
Confidence            99999999999998999999999999999999999999999999999999999999999999888888554321    12


Q ss_pred             EEEeccCCcccc---ceEeeCCccccc-cccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeE
Q 011368          407 ITVEAGKNENRK---PILQAAPRARRS-SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL  482 (487)
Q Consensus       407 ~~~~~~~~~v~~---~~~~~~~~~~~~-~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~  482 (487)
                      ..+..+..+-..   ..-+-.+..... +.-.+.+...++...-   ..-.....+.+.|.+..|||-..-+|++..+++
T Consensus       378 v~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~---~eD~d~ld~~k~ilh~sWhp~e~svaiaatnnl  454 (460)
T COG5170         378 VNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA---CEDPDNLDLLKKILHRSWHPFEDSVAIAATNNL  454 (460)
T ss_pred             EecccCCcccccCcccccccccccccccccccccccccCcceee---ccCcchhHHHHHHHhhccCCcccceeeeecCce
Confidence            222222211111   100000000000 0000111111111000   000123345668889999999999999999999


Q ss_pred             EEEeC
Q 011368          483 FFHYA  487 (487)
Q Consensus       483 ~i~~~  487 (487)
                      |||++
T Consensus       455 fvfs~  459 (460)
T COG5170         455 FVFSK  459 (460)
T ss_pred             EEEec
Confidence            99985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-38  Score=279.55  Aligned_cols=373  Identities=15%  Similarity=0.217  Sum_probs=279.3

Q ss_pred             chhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCc
Q 011368           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (487)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (487)
                      .++|+|+..++        .|..-|+|+.|+|||.++|+.+.||+|.|||-.+++.                        
T Consensus       177 GPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------------------------  224 (603)
T KOG0318|consen  177 GPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------------------------  224 (603)
T ss_pred             CCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------------------------
Confidence            45677776666        3688999999999999999999999999999888865                        


Q ss_pred             ceeEeeec---CCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368           91 YRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (487)
Q Consensus        91 ~~~~~~~~---~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (487)
                         +..+.   +|+            +.|.+++|  +||+..|++++.|.+++|||+.+.++..........+-..+...
T Consensus       225 ---vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l  287 (603)
T KOG0318|consen  225 ---VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL  287 (603)
T ss_pred             ---EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence               35555   787            99999999  68999999999999999999999988776655544444444444


Q ss_pred             ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCC
Q 011368          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  246 (487)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  246 (487)
                      .....++.........++....   ..+.++ +.+|...|+++..+|++++|++| .||.|.-|+..++... ++     
T Consensus       288 Wqkd~lItVSl~G~in~ln~~d---~~~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~-~~-----  357 (603)
T KOG0318|consen  288 WQKDHLITVSLSGTINYLNPSD---PSVLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD-RL-----  357 (603)
T ss_pred             EeCCeEEEEEcCcEEEEecccC---CChhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc-cc-----
Confidence            4455555554444333333222   223333 38999999999999999999999 9999999999855432 11     


Q ss_pred             CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368          247 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  326 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~  326 (487)
                       .-+.|...|.+++.+..+  .+.+.+.|.++++.++..+..-..  ..++.              ..+..+++..+++.
T Consensus       358 -~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~l--------------g~QP~~lav~~d~~  418 (603)
T KOG0318|consen  358 -AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKL--------------GSQPKGLAVLSDGG  418 (603)
T ss_pred             -ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeec--------------CCCceeEEEcCCCC
Confidence             126799999999988754  688889999999999876542211  11111              12345888888887


Q ss_pred             EEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-ce
Q 011368          327 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AG  405 (487)
Q Consensus       327 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-~~  405 (487)
                      +++...+..|.+..-.+ .-....+..+.                  .+++++|+++.++.|+.||.|+||.+..+. ..
T Consensus       419 ~avv~~~~~iv~l~~~~-~~~~~~~~y~~------------------s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e  479 (603)
T KOG0318|consen  419 TAVVACISDIVLLQDQT-KVSSIPIGYES------------------SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE  479 (603)
T ss_pred             EEEEEecCcEEEEecCC-cceeecccccc------------------ceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence            77776665566655222 11111122222                  489999999999999999999999999765 33


Q ss_pred             eEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC--Ccccccc-ccCCCeEEEEEcCCCCEEEEec-CC
Q 011368          406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSY-NLSSKLLHLAWHPTTNLIACAN-GN  480 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~--~~~~~~~-~~~~~v~~~~~spd~~~la~~s-~~  480 (487)
                      ...+..|..+++.++++|  ++.+     |++|...+. .+|+..  +...... -|+.+|++++|+|+..++|+|| +.
T Consensus       480 e~~~~~h~a~iT~vaySp--d~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt  552 (603)
T KOG0318|consen  480 EAKLLEHRAAITDVAYSP--DGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT  552 (603)
T ss_pred             eeeeecccCCceEEEECC--CCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence            557889999999999999  8888     999999999 899443  2222333 3889999999999999999999 55


Q ss_pred             eEEEEeC
Q 011368          481 SLFFHYA  487 (487)
Q Consensus       481 ~~~i~~~  487 (487)
                      +++||+.
T Consensus       553 ~Viiysv  559 (603)
T KOG0318|consen  553 NVIIYSV  559 (603)
T ss_pred             eEEEEEc
Confidence            6999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-39  Score=261.19  Aligned_cols=297  Identities=15%  Similarity=0.202  Sum_probs=231.9

Q ss_pred             ccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           27 EELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ....|++.|+.++..+.+ +.|++++.|.++.+|++...+..                      -...++.+.||+    
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs----   63 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS----   63 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc----
Confidence            455799999999999974 78899999999999998755332                      345678899999    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ..|..+..  +++|++.++++.|+++++||+.+++..+.                                 
T Consensus        64 --------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~---------------------------------  100 (315)
T KOG0279|consen   64 --------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRR---------------------------------  100 (315)
T ss_pred             --------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEE---------------------------------
Confidence                    78999999  68999999999999999999999865443                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                    +.+|...|.+++|++|.+.|++| .|.+|++|++. +...+.+.      -..+.+.|.|+.|+|+
T Consensus       101 --------------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~------~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen  101 --------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH------EDSHREWVSCVRFSPN  159 (315)
T ss_pred             --------------EEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe------cCCCcCcEEEEEEcCC
Confidence                          48999999999999999999999 99999999998 55555432      1223789999999998


Q ss_pred             C-CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368          265 Y-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       265 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~  342 (487)
                      . ..+|++++.|+++++||+++-+..    ..+-             +|.+.++.+++||||..+++|+ ||.+.+||++
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~-------------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQLR----TTFI-------------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcchh----hccc-------------cccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            3 289999999999999999986543    3444             4689999999999999999986 6999999998


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      . ++.+..+.+....                .+++|+|+.-.|+.+. +..|+|||+.++.. +.+++......     +
T Consensus       223 ~-~k~lysl~a~~~v----------------~sl~fspnrywL~~at-~~sIkIwdl~~~~~-v~~l~~d~~g~-----s  278 (315)
T KOG0279|consen  223 E-GKNLYSLEAFDIV----------------NSLCFSPNRYWLCAAT-ATSIKIWDLESKAV-VEELKLDGIGP-----S  278 (315)
T ss_pred             C-CceeEeccCCCeE----------------eeEEecCCceeEeecc-CCceEEEeccchhh-hhhcccccccc-----c
Confidence            6 7777777654432                5999999977666555 45699999998733 22221110000     0


Q ss_pred             eCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368          423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  486 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~  486 (487)
                                  .                    ..-.-...+++|++||..|+.|-.+ .+.+|.
T Consensus       279 ------------~--------------------~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  279 ------------S--------------------KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             ------------c--------------------ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence                        0                    0001134689999999999988855 477886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.7e-38  Score=259.61  Aligned_cols=290  Identities=12%  Similarity=0.193  Sum_probs=234.3

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .+-+|.+.|+++.|++|+++|++++.||.+.|||.-+..+.                           ..+.-..     
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s-----   97 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS-----   97 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc-----
Confidence            34568999999999999999999999999999998766542                           2233333     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|...+|  +|.|+++++|+-|+...||++...+....                                  
T Consensus        98 -------~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~----------------------------------  134 (343)
T KOG0286|consen   98 -------SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN----------------------------------  134 (343)
T ss_pred             -------eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc----------------------------------
Confidence                   77999999  67899999999999999999985421110                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-C
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-I  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~  264 (487)
                            ....+. +.+|.+.+.|+.|-+| ..|+++ .|.+..+||++++.+..        .+.+|.+.|.+++++| +
T Consensus       135 ------~~v~r~-l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  135 ------VRVSRE-LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             ------ceeeee-ecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEE--------EecCCcccEEEEecCCCC
Confidence                  011122 4899999999999975 466777 99999999999655433        3679999999999999 6


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~  343 (487)
                      + +.+++|+-|+..+|||+|.+...    +.|.+             |+..|+++.|.|+|.-+++|+| ++.++||++.
T Consensus       199 ~-ntFvSg~cD~~aklWD~R~~~c~----qtF~g-------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  199 G-NTFVSGGCDKSAKLWDVRSGQCV----QTFEG-------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             C-CeEEecccccceeeeeccCccee----Eeecc-------------cccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            6 99999999999999999998765    77777             4889999999999999999976 9999999997


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       ...+..+....             .+.+|++++||..|++|.+|..|..+.+||.-.+ +...                
T Consensus       261 -D~~~a~ys~~~-------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg----------------  309 (343)
T KOG0286|consen  261 -DQELAVYSHDS-------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVG----------------  309 (343)
T ss_pred             -CcEEeeeccCc-------------ccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEE----------------
Confidence             77777777332             2335579999999999999999999999998765 2222                


Q ss_pred             CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  486 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~  486 (487)
                                                    .+.+|+++|.++..+|||.-+++||-| .+.||+
T Consensus       310 ------------------------------~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  310 ------------------------------VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ------------------------------EeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence                                          344667788888899999999999944 588884

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.3e-40  Score=283.82  Aligned_cols=242  Identities=20%  Similarity=0.297  Sum_probs=215.5

Q ss_pred             ccccccCcEEEEEEcCC--CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           27 EELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...+|+..|.++.|+|.  +.-||+|+.||++++|++++...                           +..+.+|.   
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~---------------------------l~~l~gH~---  261 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP---------------------------LQDLEGHL---  261 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc---------------------------hhhhhcch---
Confidence            35579999999999997  56899999999999999987654                           47789999   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               ..|..++|+  |+|++|+|++.|.+-++||+.++.....                                
T Consensus       262 ---------~RVs~VafH--PsG~~L~TasfD~tWRlWD~~tk~ElL~--------------------------------  298 (459)
T KOG0272|consen  262 ---------ARVSRVAFH--PSGKFLGTASFDSTWRLWDLETKSELLL--------------------------------  298 (459)
T ss_pred             ---------hhheeeeec--CCCceeeecccccchhhcccccchhhHh--------------------------------
Confidence                     889999995  7899999999999999999998864432                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                     ..+|...|.+++|.|||.++++| .|..-++||++++...+.        +.+|...|.+|+|+|
T Consensus       299 ---------------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--------L~gH~k~I~~V~fsP  355 (459)
T KOG0272|consen  299 ---------------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--------LAGHIKEILSVAFSP  355 (459)
T ss_pred             ---------------hcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--------ecccccceeeEeECC
Confidence                           37999999999999999999999 999999999996655442        589999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeEEEEeC
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i~iwd~  341 (487)
                      +| ..||+|+.|++++|||++....+    .++..             |.+-|+.|.|+| .|.+|++++ |++++||..
T Consensus       356 NG-y~lATgs~Dnt~kVWDLR~r~~l----y~ipA-------------H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  356 NG-YHLATGSSDNTCKVWDLRMRSEL----YTIPA-------------HSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             Cc-eEEeecCCCCcEEEeeecccccc----eeccc-------------ccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            99 99999999999999999987654    55555             588999999999 688899986 599999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      ++ ..+++.+.+|+..+               .++.+++|+++|++++.|+++++|.
T Consensus       418 ~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  418 RT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCceeeecc
Confidence            87 99999999999865               6999999999999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-38  Score=290.03  Aligned_cols=381  Identities=14%  Similarity=0.148  Sum_probs=285.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|..||.-++|+|.|.+|++|+.||.++|||+..+..                           ...|+||.        
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~---------------------------th~fkG~g--------  147 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC---------------------------THSFKGHG--------  147 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE---------------------------EEEecCCC--------
Confidence            4899999999999999999999999999999987765                           58899999        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccce-eE--------eeec-------------------------
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KK--------IKEM-------------------------  155 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~--------~~~~-------------------------  155 (487)
                          +.|.++.|+|......|++|..|+++++||+.+... ..        +...                         
T Consensus       148 ----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~  223 (775)
T KOG0319|consen  148 ----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ  223 (775)
T ss_pred             ----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence                999999999877777899999999999999985432 00        0000                         


Q ss_pred             -------CCCCceeeeecccc-----ccccccccCCCCcceeeeee----------------------------------
Q 011368          156 -------DHFPFVSSENTLLA-----EKNFMNEHNPPSFAHGYHLE----------------------------------  189 (487)
Q Consensus       156 -------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------------------------------  189 (487)
                             +....+-.+++...     ...++..+..+.........                                  
T Consensus       224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ  303 (775)
T KOG0319|consen  224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ  303 (775)
T ss_pred             hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence                   00000001111111     01111111110000000000                                  


Q ss_pred             ----e-------------------------------------------eccceeeeecccCCCceeEEEeCCCCCEEEEe
Q 011368          190 ----W-------------------------------------------TENMATKVYPHAHDFNINSISNNSDCETFVSA  222 (487)
Q Consensus       190 ----~-------------------------------------------~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~  222 (487)
                          +                                           +.....-..+.+|...|.++....+|-+|++|
T Consensus       304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~  383 (775)
T KOG0319|consen  304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG  383 (775)
T ss_pred             eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe
Confidence                0                                           00111111357899999999966678899999


Q ss_pred             -cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc
Q 011368          223 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  301 (487)
Q Consensus       223 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~  301 (487)
                       .|.++++|.++.+......    .....+|.+.|.+++++..+..+|+++|.|+++++|++...+.-.. ...+.    
T Consensus       384 sKD~svilWr~~~~~~~~~~----~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~----  454 (775)
T KOG0319|consen  384 SKDKSVILWRLNNNCSKSLC----VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLT----  454 (775)
T ss_pred             cCCceEEEEEecCCcchhhh----hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-cceeh----
Confidence             9999999999533221111    1245789999999999988889999999999999999987332110 01111    


Q ss_pred             ccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC
Q 011368          302 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  380 (487)
Q Consensus       302 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  380 (487)
                         .+.....|...|++++++|+.+++++|+ |.+.+||++.. ...+.++.+|...+               +++.|+|
T Consensus       455 ---~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGv---------------w~V~Fs~  515 (775)
T KOG0319|consen  455 ---CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGV---------------WCVSFSK  515 (775)
T ss_pred             ---hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccce---------------EEEEecc
Confidence               1112345789999999999999999997 69999999994 89999999999865               7999999


Q ss_pred             CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccccccc
Q 011368          381 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN  457 (487)
Q Consensus       381 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~  457 (487)
                      ..+.++|+|.|++|+||.+.+. .+.+++.+|...|-...|..  +++.     |+|++.||. ++|  +..+-...+-.
T Consensus       516 ~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~--~~~q-----liS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  516 NDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIR--NGKQ-----LISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             ccceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeee--CCcE-----EEeccCCCcEEEEeccchhhhhhhhh
Confidence            9999999999999999999998 77999999999999999987  6666     999999999 999  55555666779


Q ss_pred             cCCCeEEEEEcCCCCEEEEecCCeEEEE
Q 011368          458 LSSKLLHLAWHPTTNLIACANGNSLFFH  485 (487)
Q Consensus       458 ~~~~v~~~~~spd~~~la~~s~~~~~i~  485 (487)
                      |.++|.+++-+|.+..+++|+.|+.+++
T Consensus       588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~  615 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLDMFVTGGGDGRIIF  615 (775)
T ss_pred             ccceeEEEeecCccceeEecCCCeEEEE
Confidence            9999999999999999999998885554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-37  Score=249.03  Aligned_cols=289  Identities=16%  Similarity=0.218  Sum_probs=235.8

Q ss_pred             CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (487)
Q Consensus        45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~  124 (487)
                      -+|+++++|.+||+|...+|.+                           ..+++-..            ..|+.+..  .
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C---------------------------~rTiqh~d------------sqVNrLei--T   49 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGIC---------------------------SRTIQHPD------------SQVNRLEI--T   49 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeE---------------------------EEEEecCc------------cceeeEEE--c
Confidence            5899999999999999998875                           46666444            88999999  6


Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      |+++.|++++. ..||+||++++...                                            ++.++ .+|.
T Consensus        50 pdk~~LAaa~~-qhvRlyD~~S~np~--------------------------------------------Pv~t~-e~h~   83 (311)
T KOG0315|consen   50 PDKKDLAAAGN-QHVRLYDLNSNNPN--------------------------------------------PVATF-EGHT   83 (311)
T ss_pred             CCcchhhhccC-CeeEEEEccCCCCC--------------------------------------------ceeEE-eccC
Confidence            88888888765 57999999988632                                            33333 8999


Q ss_pred             CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011368          205 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  283 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~  283 (487)
                      ..|..+.|..+|+.+++| .||+++|||++. -.+.        +...|.++|+++..+|+. ..|++|..+|.|++||+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~q--------R~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQ--------RNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDL  153 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccC-cccc--------hhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEc
Confidence            999999999999999999 999999999995 2232        234577999999999998 99999999999999999


Q ss_pred             cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC-----Cceeeeeeccccc
Q 011368          284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHL  357 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~-----~~~~~~~~~~~~~  357 (487)
                      ......    ..+-            ++....|.++...|||.+|+++.+ |+.++|++-..     -.++..++.|+.-
T Consensus       154 ~~~~c~----~~li------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  154 GENSCT----HELI------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH  217 (311)
T ss_pred             cCCccc----cccC------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence            986432    1111            112468999999999999999976 99999998641     2456677888765


Q ss_pred             ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceee
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR  437 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  437 (487)
                      +               +.+-+|||+++||++|.|.+++||+.++.-.....+++|..++...+|+.  ++.+     |++
T Consensus       218 i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~--dg~Y-----lvT  275 (311)
T KOG0315|consen  218 I---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA--DGEY-----LVT  275 (311)
T ss_pred             E---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc--CccE-----EEe
Confidence            4               58999999999999999999999999987445778899999999999998  8888     999


Q ss_pred             ecccce-ecC--CCCCccccccccCCCeEEEEEc
Q 011368          438 GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH  468 (487)
Q Consensus       438 g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~s  468 (487)
                      |+.|.. ++|  ..++.....-+|.+.-.+++.+
T Consensus       276 assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999 999  4445556666777777676654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-37  Score=249.66  Aligned_cols=252  Identities=18%  Similarity=0.282  Sum_probs=207.9

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|+..|..++.++||++.++++.|+++++||+.+++.                           ...|.||.      
T Consensus        59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---------------------------t~~f~GH~------  105 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---------------------------TRRFVGHT------  105 (315)
T ss_pred             eeccceEecceEEccCCceEEeccccceEEEEEecCCcE---------------------------EEEEEecC------
Confidence            445888999999999999999999999999999998864                           47799999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  ++|+..+++|+.|++|++|++.++.......                                 
T Consensus       106 ------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~~---------------------------------  144 (315)
T KOG0279|consen  106 ------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIHE---------------------------------  144 (315)
T ss_pred             ------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEec---------------------------------
Confidence                  88999999  6889999999999999999998765443310                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                   ..+.+.|.|+.|+|+  ..+|+++ .|++|++||+++.+ ..       ..+.+|++.++.++++||
T Consensus       145 -------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~-------~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  145 -------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LR-------TTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             -------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hh-------hccccccccEEEEEECCC
Confidence                         234788999999997  6788888 99999999999433 22       356799999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD  344 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~  344 (487)
                      | .++++|+.||.+.+||++.++.+    ..+..              ...|.+++|+|+...|+.+.+..|+|||+.+ 
T Consensus       204 G-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL~~at~~sIkIwdl~~-  263 (315)
T KOG0279|consen  204 G-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWLCAATATSIKIWDLES-  263 (315)
T ss_pred             C-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeEeeccCCceEEEeccc-
Confidence            9 99999999999999999998754    44444              6789999999999888888778899999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +..+..++......  ........|    .+++||+||+.|++|-.|+.|++|.+.
T Consensus       264 ~~~v~~l~~d~~g~--s~~~~~~~c----lslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  264 KAVVEELKLDGIGP--SSKAGDPIC----LSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhhhhhcccccccc--ccccCCcEE----EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            77777665432211  000001112    589999999999999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-35  Score=273.62  Aligned_cols=368  Identities=15%  Similarity=0.190  Sum_probs=283.8

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|+++.|+.|.++|++|++|-+++||.++..+..                         ....+.+|.      
T Consensus       141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-------------------------~~~~l~gHk------  189 (893)
T KOG0291|consen  141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-------------------------FTYALNGHK------  189 (893)
T ss_pred             ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-------------------------ceEeccCCC------
Confidence            4568899999999999999999999999999999876532                         346789999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccc------------------------cc------eeEeeec--
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD------------------------QK------VKKIKEM--  155 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------------~~------~~~~~~~--  155 (487)
                            +.|-+.-|  ..+...+.+.+.||.+.+|....                        .+      .....++  
T Consensus       190 ------d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l  261 (893)
T KOG0291|consen  190 ------DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL  261 (893)
T ss_pred             ------cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence                  88888888  57788899999999999998761                        11      0001111  


Q ss_pred             -CCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEc
Q 011368          156 -DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNL  232 (487)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~  232 (487)
                       .....+.+..|+.....++..-..+....-....   -..+.. +.-...+|..++|+..|..||.|  .-|.+.+|+.
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---f~lih~-LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW  337 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---FNLIHS-LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW  337 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCC---ceEEEE-eecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence             1124455555555444333322222111111111   111111 23345779999999999999997  5689999999


Q ss_pred             cCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc
Q 011368          233 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  312 (487)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  312 (487)
                      ......+        +.++|...+.+++++||| ++||+|++||.|+|||..++-+.    .+|..             |
T Consensus       338 qsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----vTFte-------------H  391 (893)
T KOG0291|consen  338 QSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----VTFTE-------------H  391 (893)
T ss_pred             eccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE----EEecc-------------C
Confidence            9655443        357899999999999999 99999999999999999998755    56666             5


Q ss_pred             ccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          313 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       313 ~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      ++.|+.+.|+..|+.|++.+ ||+|+.||+.. .+..+++..+....              ..+++..|.|..+++|+.|
T Consensus       392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD~sGelV~AG~~d  456 (893)
T KOG0291|consen  392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGAQD  456 (893)
T ss_pred             CCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEcCCCCEEEeeccc
Confidence            89999999999999999876 79999999986 88888888766532              1478899999999999988


Q ss_pred             C-cEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCc--cccccccCCCeEEEEE
Q 011368          392 N-LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HELSYNLSSKLLHLAW  467 (487)
Q Consensus       392 g-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~--~~~~~~~~~~v~~~~~  467 (487)
                      . .|++|++++| ..+-.+.+|.+||.+++|+|  .+..     |++|+-|.. ++|+.-..  ......+...++.++|
T Consensus       457 ~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~--~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsf  528 (893)
T KOG0291|consen  457 SFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSP--DGSL-----LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSF  528 (893)
T ss_pred             eEEEEEEEeecC-eeeehhcCCCCcceeeEEcc--ccCe-----EEeccccceEEEEEeeccCceeeeEeeccceeEEEE
Confidence            5 6999999999 55889999999999999999  4555     999999999 99955433  4445677788999999


Q ss_pred             cCCCCEEEEecCC-eEEEEeC
Q 011368          468 HPTTNLIACANGN-SLFFHYA  487 (487)
Q Consensus       468 spd~~~la~~s~~-~~~i~~~  487 (487)
                      +|||+-||+++-| .+-+|.+
T Consensus       529 rPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  529 RPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             cCCCCeEEEEEecceEEEEEh
Confidence            9999999999966 5888863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.3e-37  Score=285.03  Aligned_cols=266  Identities=21%  Similarity=0.287  Sum_probs=219.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhcccc------ccccCCCcceeEeeecCCCcccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD------FTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ...++|..|++|+.+||.|-.|-.|++|.+...+..+  ......+....-      .......+.....++-||+    
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~--lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~----  451 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK--LKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS----  451 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhcc--ccchhhhccccccccchhhhhccccCCceeEEeecCC----
Confidence            4579999999999999999999999999988543210  011111111100      0111112223445688999    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ++|...+|  +|+.++|++++.|+++|+|.+.+....-.                                 
T Consensus       452 --------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V~---------------------------------  488 (707)
T KOG0263|consen  452 --------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLVI---------------------------------  488 (707)
T ss_pred             --------Cceeeeee--cccccceeeccCCcceeeeecccceeEEE---------------------------------
Confidence                    99999999  68899999999999999999998765443                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                   + .+|..+|+++.|+|-|-++|++ .|++-++|.... ....+       .+.+|.+.|.|+.|+|+
T Consensus       489 -------------y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlR-------ifaghlsDV~cv~FHPN  546 (707)
T KOG0263|consen  489 -------------Y-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLR-------IFAGHLSDVDCVSFHPN  546 (707)
T ss_pred             -------------e-cCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchh-------hhcccccccceEEECCc
Confidence                         2 7999999999999999999999 999999999984 33333       46899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      . .++++||.|.++|+||..+|..+    +.|.+|             .++|.+++|||+|++|++|+ |+.|.+||+..
T Consensus       547 s-~Y~aTGSsD~tVRlWDv~~G~~V----RiF~GH-------------~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  547 S-NYVATGSSDRTVRLWDVSTGNSV----RIFTGH-------------KGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             c-cccccCCCCceEEEEEcCCCcEE----EEecCC-------------CCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            9 99999999999999999999865    787774             89999999999999999996 59999999997


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                       ++++..+.+|.+.+               .++.||.||..||+|+.|++|++||+..-
T Consensus       609 -~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  609 -GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             -CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence             89999999997654               69999999999999999999999999754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.4e-36  Score=247.59  Aligned_cols=285  Identities=18%  Similarity=0.283  Sum_probs=228.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|+++.|+|+|.+||+|+.|..|.+|++.....                          -...+++|.      
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs------   90 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS------   90 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc------
Confidence            455899999999999999999999999999999765443                          257788999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ++|..+.|  ..++..+++++.|++|+.||+++|+....                                   
T Consensus        91 ------gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk-----------------------------------  127 (338)
T KOG0265|consen   91 ------GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK-----------------------------------  127 (338)
T ss_pred             ------ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh-----------------------------------
Confidence                  99999999  68999999999999999999999986544                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  ..+|...|+.+.-+.-|..+ .++ .|+++++||+++ +.++++        ......++++.|..++
T Consensus       128 ------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t--------~~~kyqltAv~f~d~s  186 (338)
T KOG0265|consen  128 ------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKT--------FENKYQLTAVGFKDTS  186 (338)
T ss_pred             ------------hccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhc--------cccceeEEEEEecccc
Confidence                        37899999998865545555 456 999999999994 434332        2234568999999998


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~  344 (487)
                       ..+.+|+-|+.|++||++.+...    .++.+             |...|+.+..+|+|.++.+- .|+++++||++-.
T Consensus       187 -~qv~sggIdn~ikvWd~r~~d~~----~~lsG-------------h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  187 -DQVISGGIDNDIKVWDLRKNDGL----YTLSG-------------HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             -cceeeccccCceeeeccccCcce----EEeec-------------ccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence             99999999999999999987755    66666             48899999999999999986 4799999999741


Q ss_pred             ---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368          345 ---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  421 (487)
Q Consensus       345 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  421 (487)
                         .+++..+.+|.....+.           ...++|||+++.+.+|+.|..+++||.... ..+..+            
T Consensus       249 ~p~~R~v~if~g~~hnfekn-----------lL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lykl------------  304 (338)
T KOG0265|consen  249 APSQRCVKIFQGHIHNFEKN-----------LLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKL------------  304 (338)
T ss_pred             CCCCceEEEeecchhhhhhh-----------cceeeccCCCCccccccccceEEEeecccc-cEEEEc------------
Confidence               34577777765432110           147899999999999999999999998754 223333            


Q ss_pred             eeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEE
Q 011368          422 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF  484 (487)
Q Consensus       422 ~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i  484 (487)
                                                        .+|...|+.++|+|..++|.+++.| .+|+
T Consensus       305 ----------------------------------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  305 ----------------------------------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ----------------------------------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence                                              3455578888888988888877744 4654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.8e-36  Score=240.85  Aligned_cols=270  Identities=16%  Similarity=0.245  Sum_probs=220.0

Q ss_pred             ccccc-CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDV-DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~-~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .++|. ..|+.+.+.|++++||+++. -.||+||+.++...                         ++.++.+|.     
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------------------------Pv~t~e~h~-----   83 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------------------------PVATFEGHT-----   83 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-------------------------ceeEEeccC-----
Confidence            45564 47999999999999999986 47999999988642                         578999999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|++|.|  ..+|+++++|+.||+++|||++.-...+.                                  
T Consensus        84 -------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~----------------------------------  120 (311)
T KOG0315|consen   84 -------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRN----------------------------------  120 (311)
T ss_pred             -------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchh----------------------------------
Confidence                   88999999  57999999999999999999998544332                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                    ..|..+|+++..+|+...|++| .+|.|++||+... .+...      -+++....|.++...|+|
T Consensus       121 --------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~~------liPe~~~~i~sl~v~~dg  179 (311)
T KOG0315|consen  121 --------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTHE------LIPEDDTSIQSLTVMPDG  179 (311)
T ss_pred             --------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC-ccccc------cCCCCCcceeeEEEcCCC
Confidence                          4678999999999999999999 9999999999944 33322      134455789999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       .+++.+...|...+|++-.....    .       ...+...+..|++.+..+.+|||+++|++++ |.+++||+....
T Consensus       180 -sml~a~nnkG~cyvW~l~~~~~~----s-------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  180 -SMLAAANNKGNCYVWRLLNHQTA----S-------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             -cEEEEecCCccEEEEEccCCCcc----c-------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence             99999999999999999874321    1       1122334667899999999999999999985 799999999874


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccce
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  420 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  420 (487)
                      -+....+.+|+.++               ++++||.||+||++|+.|+.+++|++..+++ .....+|..+..+++
T Consensus       248 ~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh~K~~vc~~  307 (311)
T KOG0315|consen  248 FKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGHHKAAVCVA  307 (311)
T ss_pred             eeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCce-eeecCCcccccEEEE
Confidence            36667788888754               8999999999999999999999999999854 566666665544433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.1e-36  Score=261.50  Aligned_cols=332  Identities=16%  Similarity=0.255  Sum_probs=262.2

Q ss_pred             ccccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      +.+.|..+|.+.+|+|-.. .|++|+.|-+.++|++......   ..-...|++...              +-       
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~---~~~q~~lrh~~~--------------~~-------  228 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI---GSTQLVLRHCIR--------------EG-------  228 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc---cchhhhhhhhhh--------------hh-------
Confidence            4455899999999999766 8999999999999998741110   011112221111              11       


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                       .++..-...|++++|  +.+|..||+|+.||.+++|+..++....                                  
T Consensus       229 -~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t----------------------------------  271 (524)
T KOG0273|consen  229 -GKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST----------------------------------  271 (524)
T ss_pred             -cccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh----------------------------------
Confidence             112222367999999  6899999999999999999998765433                                  


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                    +..|.++|.++.|+..|++|+++ .|+++.+||..++.. .+       .++-|..+-..|.|-.+
T Consensus       272 --------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q-------~f~~~s~~~lDVdW~~~  329 (524)
T KOG0273|consen  272 --------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQ-------QFEFHSAPALDVDWQSN  329 (524)
T ss_pred             --------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EE-------eeeeccCCccceEEecC
Confidence                          37899999999999999999999 999999999985443 32       24556666677889876


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~  343 (487)
                        ..+++++.|+.|+++.+......    .++.+             |.+.|.++.|+|.|.+|++++| ++++||....
T Consensus       330 --~~F~ts~td~~i~V~kv~~~~P~----~t~~G-------------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  330 --DEFATSSTDGCIHVCKVGEDRPV----KTFIG-------------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             --ceEeecCCCceEEEEEecCCCcc----eeeec-------------ccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence              58999999999999988876544    66666             5899999999999999999975 9999999875


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCC---------CEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                       ......+.+|...+               ..+.|+|+|         ..|++++.|++|++||+..+ .....|-.|..
T Consensus       391 -~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~  453 (524)
T KOG0273|consen  391 -SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQE  453 (524)
T ss_pred             -Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCC
Confidence             78888999998754               488898854         47899999999999999988 56888999999


Q ss_pred             ccccceEeeCCccccccccceeeecccce-ecCCCC-CccccccccCCCeEEEEEcCCCCEEEEec-CCeEEE
Q 011368          415 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  484 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i  484 (487)
                      +|.+++|+|  ++++     +++|+.|+. .+|+.. ..+...+.-...|..++|+-+|++|..+- ++.+++
T Consensus       454 pVysvafS~--~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  454 PVYSVAFSP--NGRY-----LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             ceEEEEecC--CCcE-----EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence            999999999  7888     999999999 999543 23445556677799999999998877555 444544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.8e-38  Score=268.04  Aligned_cols=277  Identities=20%  Similarity=0.329  Sum_probs=239.5

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      -+|..+.|.|+|+.|++|+..|.+.+|+..                           .+.+-..+++|.           
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~---------------------------~fnFEtilQaHD-----------  138 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---------------------------SFNFETILQAHD-----------  138 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCc---------------------------eeeHHHHhhhhc-----------
Confidence            479999999999999999999999999964                           233346678888           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       .+|.++.|  ++++.++++|..+|.|++|+..-...+.+                                        
T Consensus       139 -s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~----------------------------------------  175 (464)
T KOG0284|consen  139 -SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII----------------------------------------  175 (464)
T ss_pred             -ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh----------------------------------------
Confidence             99999999  58899999999999999999876543332                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             ...|...|++++|+|+...|++| +||+|+|||.......        ..+.+|.-.|.+++|+|.. .++++
T Consensus       176 -------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--------~vL~GHgwdVksvdWHP~k-gLias  239 (464)
T KOG0284|consen  176 -------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--------RVLRGHGWDVKSVDWHPTK-GLIAS  239 (464)
T ss_pred             -------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--------heeccCCCCcceeccCCcc-ceeEE
Confidence                   13455899999999999999999 9999999999855442        2468999999999999998 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      ++.|..|++||.+++.++    ..+..             |...|..+.|+|++.+|++++ |..++++|+++ .+.+..
T Consensus       240 gskDnlVKlWDprSg~cl----~tlh~-------------HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~  301 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSGSCL----ATLHG-------------HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFT  301 (464)
T ss_pred             ccCCceeEeecCCCcchh----hhhhh-------------ccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHH
Confidence            999999999999999865    44555             578999999999999999986 69999999996 788999


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  429 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  429 (487)
                      +++|...+               +++.|+| ...++.+|+.||.|..|.+...+.......+|...|+++++.|  -|.+
T Consensus       302 ~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP--lGhi  364 (464)
T KOG0284|consen  302 YRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP--LGHI  364 (464)
T ss_pred             hhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc--ccee
Confidence            99999855               6999999 5678899999999999999866566667789999999999999  5666


Q ss_pred             ccccceeeecccce-ecC
Q 011368          430 SSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       430 ~~~~~l~~g~~~~~-~~w  446 (487)
                           |++|+.|.. +.|
T Consensus       365 -----l~tgsnd~t~rfw  377 (464)
T KOG0284|consen  365 -----LATGSNDRTVRFW  377 (464)
T ss_pred             -----EeecCCCcceeee
Confidence                 999999999 999

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-35  Score=243.38  Aligned_cols=244  Identities=24%  Similarity=0.409  Sum_probs=212.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..-|..+||+|.|+++|+|+.|+...||++.+.+.                     ....+..+++.+|+          
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~---------------------~g~~~v~r~l~gHt----------  145 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA---------------------EGNVRVSRELAGHT----------  145 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccc---------------------cccceeeeeecCcc----------
Confidence            44688999999999999999999999999986532                     11345567899999          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        +-+.+.+|   .++..|+|++.|.+..+||+++++....                                       
T Consensus       146 --gylScC~f---~dD~~ilT~SGD~TCalWDie~g~~~~~---------------------------------------  181 (343)
T KOG0286|consen  146 --GYLSCCRF---LDDNHILTGSGDMTCALWDIETGQQTQV---------------------------------------  181 (343)
T ss_pred             --ceeEEEEE---cCCCceEecCCCceEEEEEcccceEEEE---------------------------------------
Confidence              88999999   4577899999999999999999987655                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                              +.+|.+.|.+++++| +++.+++| -|+..++||++. +.+.+       .+++|...|.+|.|.|+| .-|
T Consensus       182 --------f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~q-------tF~ghesDINsv~ffP~G-~af  244 (343)
T KOG0286|consen  182 --------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQ-------TFEGHESDINSVRFFPSG-DAF  244 (343)
T ss_pred             --------ecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeE-------eecccccccceEEEccCC-Cee
Confidence                    489999999999999 99999999 999999999994 46665       478999999999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      ++|++|++.|+||+|..+.+    ..++.           .....+|++++||..|++|++|. |.++.+||.-. ++.+
T Consensus       245 atGSDD~tcRlyDlRaD~~~----a~ys~-----------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~v  308 (343)
T KOG0286|consen  245 ATGSDDATCRLYDLRADQEL----AVYSH-----------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERV  308 (343)
T ss_pred             eecCCCceeEEEeecCCcEE----eeecc-----------CcccCCceeEEEcccccEEEeeecCCceeEeeccc-cceE
Confidence            99999999999999997654    45543           12246899999999999999984 69999999976 8889


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      ..+.+|++.+               .++..+|||.-+++|+.|..++||.
T Consensus       309 g~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  309 GVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeccCCee---------------EEEEECCCCcEEEecchhHheeecC
Confidence            9999999866               6999999999999999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.1e-37  Score=263.06  Aligned_cols=275  Identities=19%  Similarity=0.274  Sum_probs=232.0

Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..+|..|+|  .|+|+.|++|+..|.+.+|+...-....+                                        
T Consensus        96 kc~V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEti----------------------------------------  133 (464)
T KOG0284|consen   96 KCPVNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFETI----------------------------------------  133 (464)
T ss_pred             ccceeeEEE--cCCCceeEeecccccEEEecCceeeHHHH----------------------------------------
Confidence            378999999  68999999999999999999854332222                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~  270 (487)
                             +..|.+.|+++.|++++.++++| .+|.|++|+...+.  ++       .+.+ |...|++++|+|+. ..|+
T Consensus       134 -------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk-------~~~ahh~eaIRdlafSpnD-skF~  196 (464)
T KOG0284|consen  134 -------LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK-------IIQAHHAEAIRDLAFSPND-SKFL  196 (464)
T ss_pred             -------hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH-------HhhHhhhhhhheeccCCCC-ceeE
Confidence                   48999999999999999999999 99999999988332  21       1234 44899999999998 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      ++++||+|+|||....+..    +.+.+             |...|.+++|+|...+|++++ |+.|++||.++ +.++.
T Consensus       197 t~SdDg~ikiWdf~~~kee----~vL~G-------------HgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~  258 (464)
T KOG0284|consen  197 TCSDDGTIKIWDFRMPKEE----RVLRG-------------HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLA  258 (464)
T ss_pred             EecCCCeEEEEeccCCchh----heecc-------------CCCCcceeccCCccceeEEccCCceeEeecCCC-cchhh
Confidence            9999999999999876533    44555             578899999999999999986 59999999998 99999


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  429 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  429 (487)
                      ++..|+..+               ..+.|+|++.+|+++|.|..++++|+++. ..+..+++|+..++++.+.|-. ..+
T Consensus       259 tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~-~~l  321 (464)
T KOG0284|consen  259 TLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLN-ESL  321 (464)
T ss_pred             hhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeecccccc-ccc
Confidence            999999865               69999999999999999999999999966 4588999999999999999963 333


Q ss_pred             ccccceeeecccce-ecCCCC---CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          430 SSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       430 ~~~~~l~~g~~~~~-~~w~~~---~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                           |.+|+.|+. ..|..+   .....-..|+..|.+++|||=|-+||+|+.|. +.+|.
T Consensus       322 -----ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  322 -----FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             -----eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence                 899999999 777443   23334458999999999999999999999665 66664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-36  Score=252.86  Aligned_cols=283  Identities=16%  Similarity=0.199  Sum_probs=244.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|..+|+.+-|+|+-..+++++.|++|++||..+++.                           ...++||.      
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt------  150 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHT------  150 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccc------
Confidence            456888999999999999999999999999999998875                           48899999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            +++..|+|  ...|+++++++.|-.+++||..+..                                       
T Consensus       151 ------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~---------------------------------------  183 (406)
T KOG0295|consen  151 ------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF---------------------------------------  183 (406)
T ss_pred             ------cceeEEEE--ecCccEEEecCCccchhheeHHHHH---------------------------------------
Confidence                  88999999  5779999999999999999998741                                       


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                            ++.+. +.+|...|.++.|-|.|.+|+++ .|.+|+.|++. .+.++.       ++.+|...|..+..+.|| 
T Consensus       184 ------~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~-------t~~~h~ewvr~v~v~~DG-  247 (406)
T KOG0295|consen  184 ------RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVK-------TFPGHSEWVRMVRVNQDG-  247 (406)
T ss_pred             ------HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEE-------eccCchHhEEEEEecCCe-
Confidence                  12222 37999999999999999999999 99999999999 455665       368999999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---------------CCEEEEE
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------------GQHLLSR  331 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---------------~~~l~s~  331 (487)
                      .++++++.|.+|++|-+.+++..    ..+..             |+-+|.+++|-|.               +++++++
T Consensus       248 ti~As~s~dqtl~vW~~~t~~~k----~~lR~-------------hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~  310 (406)
T KOG0295|consen  248 TIIASCSNDQTLRVWVVATKQCK----AELRE-------------HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG  310 (406)
T ss_pred             eEEEecCCCceEEEEEeccchhh----hhhhc-------------cccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence            99999999999999999987533    34444             5778899988653               3588888


Q ss_pred             e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          332 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       332 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      + |++|++||+.+ +.++.++.+|.+++               .+++|+|.|+||+++.+|+++++||++++ .+.+++.
T Consensus       311 SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~  373 (406)
T KOG0295|consen  311 SRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE  373 (406)
T ss_pred             cccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence            6 69999999998 99999999999976               69999999999999999999999999988 6688999


Q ss_pred             ccCCccccceEeeCCccccccccceeeecccce-ecCC
Q 011368          411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      +|..-++.+.|....+  +     +++|+-|.. ++|.
T Consensus       374 ah~hfvt~lDfh~~~p--~-----VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  374 AHEHFVTSLDFHKTAP--Y-----VVTGSVDQTVKVWE  404 (406)
T ss_pred             CCcceeEEEecCCCCc--e-----EEeccccceeeeee
Confidence            9999999999987533  4     789998888 8883

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-34  Score=234.05  Aligned_cols=294  Identities=16%  Similarity=0.312  Sum_probs=222.9

Q ss_pred             cccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cCCCcccc
Q 011368           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD  105 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~  105 (487)
                      ...|.+.|..++|+|- |..||+|+.|..|+||+...+.                        ++.+...+ .+|+    
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk----   61 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK----   61 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch----
Confidence            3458889999999998 8999999999999999987532                        33344444 3577    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ..|.+++|  +|.|++|++|+.|.++.||.-..++....                                 
T Consensus        62 --------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv---------------------------------   98 (312)
T KOG0645|consen   62 --------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECV---------------------------------   98 (312)
T ss_pred             --------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEE---------------------------------
Confidence                    88999999  67899999999999999998877765543                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                 .+ +.+|...|.|++|+++|++||+| +|+.|-||.+. .+..+...    ..+++|...|..+.|+|.
T Consensus        99 -----------~~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~----aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   99 -----------AT-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECI----AVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             -----------ee-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEE----eeeccccccccEEEEcCC
Confidence                       11 48999999999999999999999 99999999998 44444432    357899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~  343 (487)
                      . .+|++++.|++|++|+-..+.-. .....+.+             |.+.|.+++|+|.|..|++++| ++++||...+
T Consensus       162 ~-dlL~S~SYDnTIk~~~~~~dddW-~c~~tl~g-------------~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  162 E-DLLFSCSYDNTIKVYRDEDDDDW-ECVQTLDG-------------HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             c-ceeEEeccCCeEEEEeecCCCCe-eEEEEecC-------------ccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            8 99999999999999987732211 11244455             5789999999999999999975 9999999753


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       .-    -..|...+               ..++|.  ...|++++.|+.|++|.-...-.         ++...+    
T Consensus       227 -~~----~~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d---------~p~~~l----  271 (312)
T KOG0645|consen  227 -DL----SGMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPD---------EPSWNL----  271 (312)
T ss_pred             -Cc----chhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCC---------CchHHH----
Confidence             11    01222222               478887  45799999999999998763311         111111    


Q ss_pred             CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCC-CCEEEEecCCe-EEEEe
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNS-LFFHY  486 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd-~~~la~~s~~~-~~i~~  486 (487)
                                                 ....-..|+..|++++|+|. .+.|+++++|+ +.+|.
T Consensus       272 ---------------------------~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  272 ---------------------------LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             ---------------------------HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence                                       11122356678999999995 57888888777 55664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=254.73  Aligned_cols=287  Identities=17%  Similarity=0.295  Sum_probs=240.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|++.|+-+.||++|+|||+++.|.+..||++....                        .++...++.+|.        
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~--------  269 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS--------  269 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc--------
Confidence            489999999999999999999999999999986543                        356788999999        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          .+|..+.|  +||+++|++|+.|..+.+||+.+|.....                                     
T Consensus       270 ----~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~-------------------------------------  306 (519)
T KOG0293|consen  270 ----QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHL-------------------------------------  306 (519)
T ss_pred             ----CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhh-------------------------------------
Confidence                99999999  68999999999999999999999975543                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC-CcEEEEEEecCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCN  267 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~  267 (487)
                               +-.++...+.+++|.|||..+++| .|++|..||++. . ...       ..++.. ..|.+++..++| +
T Consensus       307 ---------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n-~~~-------~W~gvr~~~v~dlait~Dg-k  367 (519)
T KOG0293|consen  307 ---------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-N-ILG-------NWEGVRDPKVHDLAITYDG-K  367 (519)
T ss_pred             ---------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-c-hhh-------cccccccceeEEEEEcCCC-c
Confidence                     224566889999999999999999 999999999983 2 211       122222 458999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~  346 (487)
                      ++++.+.|..|++++.++....    .....              ..+|++...|.||+++++. .+..+++||++ +.+
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~  428 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENK  428 (519)
T ss_pred             EEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhh
Confidence            9999999999999999875432    23333              4689999999999998887 56999999999 588


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      .+..+.+|......             ..-||.. +..++++||+|+.|+||+..++ ..+.++.+|...|++++++|. 
T Consensus       429 lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~-  493 (519)
T KOG0293|consen  429 LVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPA-  493 (519)
T ss_pred             HHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCC-
Confidence            89999998864321             2456654 5689999999999999999988 568999999999999999997 


Q ss_pred             ccccccccceeeecccce-ecCCCC
Q 011368          426 RARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      +..+     +|+++.|+. ++|...
T Consensus       494 ~p~m-----~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  494 DPEM-----FASASDDGTIRIWGPS  513 (519)
T ss_pred             CHHH-----hhccCCCCeEEEecCC
Confidence            5566     899999999 999654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-35  Score=233.52  Aligned_cols=280  Identities=20%  Similarity=0.323  Sum_probs=231.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|.++|.++.|+-||+|.++++.|.+|++|+...+.+                           ++++.+|.        
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l---------------------------iktYsghG--------   59 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL---------------------------IKTYSGHG--------   59 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccce---------------------------eeeecCCC--------
Confidence            3688999999999999999999999999999876654                           68999999        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..|..++.  +.|+..|++|+.|+.+.+||+.+|+..+.                                     
T Consensus        60 ----~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr-------------------------------------   96 (307)
T KOG0316|consen   60 ----HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR-------------------------------------   96 (307)
T ss_pred             ----ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee-------------------------------------
Confidence                77999998  57888999999999999999999986654                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                +.+|.+.|+.++|+.+...+++| .|.++++||.+.... +++       .+......|.++..+.   .
T Consensus        97 ----------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ-------ildea~D~V~Si~v~~---h  156 (307)
T KOG0316|consen   97 ----------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ-------ILDEAKDGVSSIDVAE---H  156 (307)
T ss_pred             ----------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc-------hhhhhcCceeEEEecc---c
Confidence                      48999999999999999999999 999999999985432 232       3456667899998875   5


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      .|++|+.||++|.||++.|++.    .-+-+               .+|+++.|++|++..++++ ++++++.|-.+ ++
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~----sDy~g---------------~pit~vs~s~d~nc~La~~l~stlrLlDk~t-Gk  216 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLS----SDYFG---------------HPITSVSFSKDGNCSLASSLDSTLRLLDKET-GK  216 (307)
T ss_pred             EEEeeccCCcEEEEEeecceee----hhhcC---------------CcceeEEecCCCCEEEEeeccceeeecccch-hH
Confidence            6999999999999999998754    22233               4899999999999988875 69999999988 99


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+..+++|.+...+             ...+++.....+++|++||.+++||+..... ...+..+...           
T Consensus       217 lL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~~v-----------  271 (307)
T KOG0316|consen  217 LLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVSTV-----------  271 (307)
T ss_pred             HHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEecccee-eeeeccCCce-----------
Confidence            99999999875433             3778888888999999999999999987632 2222222111           


Q ss_pred             cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                                                        .|.+++++|....+.++...+.+.|.
T Consensus       272 ----------------------------------~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  272 ----------------------------------IVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             ----------------------------------eEEeeecccCccceeEecCCceecee
Confidence                                              36788888888888888877777775

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.5e-35  Score=253.89  Aligned_cols=283  Identities=16%  Similarity=0.269  Sum_probs=225.8

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ....+..|++++|+.+|.+||+|..||.++||+.....                            +.+|..|+      
T Consensus       231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------------------------~~tl~~Hk------  276 (524)
T KOG0273|consen  231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------------------------ISTLGQHK------  276 (524)
T ss_pred             cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------------------------hhhhhccC------
Confidence            33446789999999999999999999999999986654                            47788899      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ++|.++.|  +..|.+|++++.|+++.+||..++...........+ ..++.+-. +. -++.+  .....+..
T Consensus       277 ------gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~~-~~-~F~ts--~td~~i~V  343 (524)
T KOG0273|consen  277 ------GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQS-ND-EFATS--STDGCIHV  343 (524)
T ss_pred             ------CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-ccceEEec-Cc-eEeec--CCCceEEE
Confidence                  99999999  688999999999999999999988776654332222 00111111 11 11111  11222333


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                      ...+...+..++ .+|.+.|.++.|+|.+.+|++| +|++++||... ...+.       +.+.+|...|+.+.|+|.|+
T Consensus       344 ~kv~~~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~-------~~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  344 CKVGEDRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSV-------HDLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             EEecCCCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcch-------hhhhhhccceeeEeecCCCC
Confidence            344556777777 7799999999999999999999 99999999987 44443       35789999999999999753


Q ss_pred             --------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEE
Q 011368          267 --------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  337 (487)
Q Consensus       267 --------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~  337 (487)
                              ..+++++.|++|++||+..+..+    ..|..             |..+|.+++|+|+|+|+++|+ ||.|.
T Consensus       415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~k-------------H~~pVysvafS~~g~ylAsGs~dg~V~  477 (524)
T KOG0273|consen  415 VTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMK-------------HQEPVYSVAFSPNGRYLASGSLDGCVH  477 (524)
T ss_pred             ccCCCcCCceEEEeecCCeEEEEEccCCcee----Eeecc-------------CCCceEEEEecCCCcEEEecCCCCeeE
Confidence                    58999999999999999998765    56655             488999999999999999997 69999


Q ss_pred             EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +|+.++ ++.++.+.+....                +.++|+.+|.+|..+-.|+.+.+-|++
T Consensus       478 iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  478 IWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999998 8888888876642                599999999999999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-35  Score=248.46  Aligned_cols=253  Identities=18%  Similarity=0.306  Sum_probs=219.2

Q ss_pred             hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcc
Q 011368           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (487)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (487)
                      .+|++...+.        .|.+-|.|+++.|.++++++|+.|++|+|||+.+++.                         
T Consensus       139 apwKl~rVi~--------gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-------------------------  185 (460)
T KOG0285|consen  139 APWKLYRVIS--------GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-------------------------  185 (460)
T ss_pred             Ccceehhhhh--------hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-------------------------
Confidence            4466665544        5899999999999999999999999999999999876                         


Q ss_pred             eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                        ..++.||-            ..|..++++  +--.|+++++.|+.|+.||+...+.++.                   
T Consensus       186 --kltltGhi------------~~vr~vavS--~rHpYlFs~gedk~VKCwDLe~nkvIR~-------------------  230 (460)
T KOG0285|consen  186 --KLTLTGHI------------ETVRGVAVS--KRHPYLFSAGEDKQVKCWDLEYNKVIRH-------------------  230 (460)
T ss_pred             --EEeecchh------------heeeeeeec--ccCceEEEecCCCeeEEEechhhhhHHH-------------------
Confidence              58899998            889999994  5667999999999999999998875543                   


Q ss_pred             ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                                 | .+|-+.|+|++..|.-..|++| .|.++++||+++.....        .+.
T Consensus       231 ---------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~--------~l~  274 (460)
T KOG0285|consen  231 ---------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH--------VLS  274 (460)
T ss_pred             ---------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEE--------Eec
Confidence                                       2 7999999999999999999999 99999999999654432        468


Q ss_pred             CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      +|...|.++.+.|.. ..+++|+.|++|++||++.++..    .++..             |...|.+++.+|....+++
T Consensus       275 GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tlt~-------------hkksvral~lhP~e~~fAS  336 (460)
T KOG0285|consen  275 GHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITLTH-------------HKKSVRALCLHPKENLFAS  336 (460)
T ss_pred             CCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eeeec-------------ccceeeEEecCCchhhhhc
Confidence            999999999999988 78999999999999999998744    34444             5789999999999988888


Q ss_pred             EeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       331 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ++-..|+-|++.. +..+..+.+|...+               .+++...|| ++++|+++|.+.+||.+++.
T Consensus       337 as~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  337 ASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             cCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEEEEecCcCc
Confidence            8878999999986 88888899998765               588888776 78899999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-33  Score=259.60  Aligned_cols=373  Identities=13%  Similarity=0.161  Sum_probs=274.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      -..+|.|+.|||+|+++|.|.. +.+.||.......                   ...+++...+++.+|-         
T Consensus        95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~-------------------~~~~pFvl~r~~~g~f---------  145 (893)
T KOG0291|consen   95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIK-------------------NEFNPFVLHRTYLGHF---------  145 (893)
T ss_pred             ecCccceEEECCCCcEEEEEec-ceeEEEecCcchh-------------------cccCcceEeeeecCCc---------
Confidence            4678999999999999998864 6899999765432                   0245777888999998         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCC-Cceeeeecccc---------ccccccccCCC
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF-PFVSSENTLLA---------EKNFMNEHNPP  180 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~  180 (487)
                         ..|.++.|  +.|.++|++|+.|.++++|.++..+-......+.. ..+...-|...         +|.++.-....
T Consensus       146 ---ddi~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~  220 (893)
T KOG0291|consen  146 ---DDITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDL  220 (893)
T ss_pred             ---cceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecC
Confidence               88999999  68899999999999999999987654333322222 22222222222         22222211110


Q ss_pred             Ccceeee----------eeee--c---------cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce
Q 011368          181 SFAHGYH----------LEWT--E---------NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  238 (487)
Q Consensus       181 ~~~~~~~----------~~~~--~---------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~  238 (487)
                      .+.....          ...+  .         ....+.++......|++.+|++..+.|++| ..|...+|.+. .-.+
T Consensus       221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP-~f~l  299 (893)
T KOG0291|consen  221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP-DFNL  299 (893)
T ss_pred             CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC-CceE
Confidence            0000000          0000  0         111233445556889999999999999999 99999999998 4444


Q ss_pred             eEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-CeEEEEEccCCccccccceeecccccccCcccccccccccee
Q 011368          239 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  317 (487)
Q Consensus       239 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  317 (487)
                      +..+       .-....|..++|+..| .+||.|+.. |.+.+|+.++..      .+++.           .+|...++
T Consensus       300 ih~L-------Sis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs------YVlKQ-----------QgH~~~i~  354 (893)
T KOG0291|consen  300 IHSL-------SISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES------YVLKQ-----------QGHSDRIT  354 (893)
T ss_pred             EEEe-------ecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc------eeeec-----------ccccccee
Confidence            4332       2234568999999999 999999875 899999998865      34443           45688999


Q ss_pred             EEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEE
Q 011368          318 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  396 (487)
Q Consensus       318 ~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~i  396 (487)
                      +++++|||+++++|. ||.|+|||..+ +-++.++..|...+               +.++|+..|+.|++.+-||+|+.
T Consensus       355 ~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~V---------------t~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  355 SLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGV---------------TAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             eEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCce---------------EEEEEEecCCEEEEeecCCeEEe
Confidence            999999999999985 69999999987 88999999999865               69999999999999999999999


Q ss_pred             EEeCCCCceeEEEeccCCc-cccceEeeCCccccccccceeeecccce--ecC--CCCCccccccccCCCeEEEEEcCCC
Q 011368          397 FSHGVGSAGGITVEAGKNE-NRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLSSKLLHLAWHPTT  471 (487)
Q Consensus       397 wd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~w--~~~~~~~~~~~~~~~v~~~~~spd~  471 (487)
                      ||+... ....++...... -.+++.-|  .|-+     ++.|+.|..  .+|  ++++++..+.+|+++|.+++|+|++
T Consensus       419 wDlkRY-rNfRTft~P~p~QfscvavD~--sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~  490 (893)
T KOG0291|consen  419 WDLKRY-RNFRTFTSPEPIQFSCVAVDP--SGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG  490 (893)
T ss_pred             eeeccc-ceeeeecCCCceeeeEEEEcC--CCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence            999876 334455443221 22333333  4555     888888888  889  7888999999999999999999999


Q ss_pred             CEEEEec-CCeEEEEeC
Q 011368          472 NLIACAN-GNSLFFHYA  487 (487)
Q Consensus       472 ~~la~~s-~~~~~i~~~  487 (487)
                      ..||++| +..+.+|+.
T Consensus       491 ~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  491 SLLASGSWDKTVRIWDI  507 (893)
T ss_pred             CeEEeccccceEEEEEe
Confidence            9999999 556999973

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.5e-34  Score=240.45  Aligned_cols=331  Identities=12%  Similarity=0.083  Sum_probs=264.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|++.|.+++.+|+.+++|||+.|..-.||+..+++.                           ...+.+|+      
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---------------------------~~eltgHK------  106 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---------------------------AGELTGHK------  106 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---------------------------eeEecCCC------
Confidence            456999999999999999999999999999999998864                           58899999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|+++.|  +.+|.+||||..+|.|+||+..++.....                                   
T Consensus       107 ------DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~-----------------------------------  143 (399)
T KOG0296|consen  107 ------DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWK-----------------------------------  143 (399)
T ss_pred             ------CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEE-----------------------------------
Confidence                  99999999  68999999999999999999998875543                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +...-..+.-+.|+|-+..|++| .||.+.+|.+.+++. .+       .+.+|+.++++=.|.|+| 
T Consensus       144 ------------~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~k-------v~~Gh~~~ct~G~f~pdG-  202 (399)
T KOG0296|consen  144 ------------LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CK-------VMSGHNSPCTCGEFIPDG-  202 (399)
T ss_pred             ------------eecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-ee-------EecCCCCCcccccccCCC-
Confidence                        13455678889999999999999 999999999995433 33       257999999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      +.++++..||+|++|++.++..+    ..+... +           .....++.++.++..++.|+ ++.+++-...+ +
T Consensus       203 Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~~-e-----------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-g  265 (399)
T KOG0296|consen  203 KRILTGYDDGTIIVWNPKTGQPL----HKITQA-E-----------GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-G  265 (399)
T ss_pred             ceEEEEecCceEEEEecCCCcee----EEeccc-c-----------cCcCCccccccccceeEeccCCccEEEEcccc-c
Confidence            99999999999999999998754    333320 0           13567788888888888885 48888887766 6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      +.+....+.. +...........++   -.+.++..=.+.|+|+-||+|.|||+...  .....-.|...|.++.|.+  
T Consensus       266 KVv~~~n~~~-~~l~~~~e~~~esv---e~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~--  337 (399)
T KOG0296|consen  266 KVVNCNNGTV-PELKPSQEELDESV---ESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN--  337 (399)
T ss_pred             eEEEecCCCC-ccccccchhhhhhh---hhcccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC--
Confidence            6665555311 00000000111122   25666667778899999999999999865  4556667888899999987  


Q ss_pred             ccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          426 RARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                       ..+     |.++..++. +.|  ++++++..+.+|...|.+++.+|++++++++|+|+ ..||.
T Consensus       338 -t~~-----l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  338 -TDY-----LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             -cch-----heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence             233     899999999 999  78899999999999999999999999999999766 66664

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-34  Score=260.09  Aligned_cols=267  Identities=17%  Similarity=0.211  Sum_probs=224.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|++.|.++.|+|...+++++-.+|.|.||+.++...                           ++++.-..      
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~------   55 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE------   55 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc------
Confidence            344788999999999999999999999999999987754                           45565555      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            .+|.+..|.  ...+++++|+.|..|++|+..+++....                                   
T Consensus        56 ------~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~-----------------------------------   92 (794)
T KOG0276|consen   56 ------VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKT-----------------------------------   92 (794)
T ss_pred             ------cchhhheee--eccceEEEecCCceEEEEecccceeeEE-----------------------------------
Confidence                  789999996  4567999999999999999999876554                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +..|.+-|++++.+|...++.++ +|-+|++||.+..-.+.+       ++++|...|++++|+|..+
T Consensus        93 ------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-------tfeGH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   93 ------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-------TFEGHEHYVMQVAFNPKDP  153 (794)
T ss_pred             ------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-------EEcCcceEEEEEEecCCCc
Confidence                        48999999999999999999999 999999999996555544       4799999999999999888


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEEeC-CeEEEEeCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY-MNLKLWDIRM  343 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~d-~~i~iwd~~~  343 (487)
                      +.+++++-|++|++|.+.+....    .++++             |+..|+++.+-+-|  .||++|+| ..|+|||.++
T Consensus       154 ntFaS~sLDrTVKVWslgs~~~n----fTl~g-------------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPHPN----FTLEG-------------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             cceeeeeccccEEEEEcCCCCCc----eeeec-------------cccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            99999999999999999886543    45555             58999999998754  59999865 9999999998


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       ..++.++.+|...+               ..++|+|.=..|++|+.||+++||+..+-+ ...++....+.+++++..+
T Consensus       217 -k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty~-lE~tLn~gleRvW~I~~~k  279 (794)
T KOG0276|consen  217 -KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTYK-LEKTLNYGLERVWCIAAHK  279 (794)
T ss_pred             -HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCccee-hhhhhhcCCceEEEEeecC
Confidence             99999999999866               589999999999999999999999988753 2444444555555555443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-33  Score=269.89  Aligned_cols=289  Identities=25%  Similarity=0.455  Sum_probs=231.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |...|.|+.|+++|+++++++.|+.+++|+..+.+.                         .....+.+|.         
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~---------  203 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT---------  203 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence            367899999999999999999999999999865540                         1235567888         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         ..|.+++|  +++++++++++.|++|++||+. .+...+.                                     
T Consensus       204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~-------------------------------------  241 (456)
T KOG0266|consen  204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-------------------------------------  241 (456)
T ss_pred             ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEE-------------------------------------
Confidence               88999999  6889999999999999999994 3344333                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +.+|...|++++|+|+++++++| .|++|++||+++ +.+..       .+.+|...|.+++|++++ .+
T Consensus       242 ----------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~-------~l~~hs~~is~~~f~~d~-~~  302 (456)
T KOG0266|consen  242 ----------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVR-------KLKGHSDGISGLAFSPDG-NL  302 (456)
T ss_pred             ----------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEE-------eeeccCCceEEEEECCCC-CE
Confidence                      37999999999999999999999 999999999995 55554       368999999999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      |++++.|+.|++||+.++...  ..+.+..+.          ... .++.+.|+|++++++++. |+.+++||+.. ...
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~----------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-~~~  368 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKL--CLKLLSGAE----------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS-GKS  368 (456)
T ss_pred             EEEcCCCccEEEEECCCCcee--eeecccCCC----------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccC-Ccc
Confidence            999999999999999998731  113444420          012 589999999999999986 58999999987 888


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  427 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  427 (487)
                      ...+.+|....         -++   .+...+++++++++|+.|+.|++|++.++ .....+.+|.              
T Consensus       369 ~~~~~~~~~~~---------~~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~--------------  421 (456)
T KOG0266|consen  369 VGTYTGHSNLV---------RCI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHS--------------  421 (456)
T ss_pred             eeeecccCCcc---------eeE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCC--------------
Confidence            88888887642         022   36667889999999999999999999986 3233333331              


Q ss_pred             ccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec---CCeEEEEe
Q 011368          428 RRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHY  486 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s---~~~~~i~~  486 (487)
                                                     ...|..++|+|..+++++++   +..+.+|.
T Consensus       422 -------------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  422 -------------------------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             -------------------------------CCceeccccCCCcCeeeecCcCCCceEEEec
Confidence                                           34667788888888888887   33366664

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-33  Score=259.38  Aligned_cols=387  Identities=16%  Similarity=0.185  Sum_probs=282.3

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..-+|..+|+++.|+..|..||+|+.|+.|.+||+-...-                           ...++||.     
T Consensus       102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G---------------------------l~rL~GHk-----  149 (888)
T KOG0306|consen  102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG---------------------------LFRLRGHK-----  149 (888)
T ss_pred             eecccccceEEEEEcccCceEeecCCCccEEEEEecccee---------------------------eEEeecch-----
Confidence            3456999999999999999999999999999999865532                           46789999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC--------------------CCCceeeeec
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD--------------------HFPFVSSENT  166 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------------~~~~~~~~~~  166 (487)
                             +.|+..-|.  .+.+++++.+.|+.|++||+.+..+.......                    ....+..+++
T Consensus       150 -------d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~  220 (888)
T KOG0306|consen  150 -------DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAF  220 (888)
T ss_pred             -------HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeec
Confidence                   889999884  55789999999999999999876554332100                    0011111111


Q ss_pred             cc-------------------------------cccccccccCCCCcceeeee---------------------------
Q 011368          167 LL-------------------------------AEKNFMNEHNPPSFAHGYHL---------------------------  188 (487)
Q Consensus       167 ~~-------------------------------~~~~~~~~~~~~~~~~~~~~---------------------------  188 (487)
                      ..                               .+..+++..+.+........                           
T Consensus       221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~  300 (888)
T KOG0306|consen  221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE  300 (888)
T ss_pred             ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence            10                               11111111110000000000                           


Q ss_pred             ----------------------------------------------eeec--------cceee---eecccCCCceeEEE
Q 011368          189 ----------------------------------------------EWTE--------NMATK---VYPHAHDFNINSIS  211 (487)
Q Consensus       189 ----------------------------------------------~~~~--------~~~~~---~~~~~~~~~v~~i~  211 (487)
                                                                    .|..        .++.+   .-+.+|...|++++
T Consensus       301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~  380 (888)
T KOG0306|consen  301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC  380 (888)
T ss_pred             cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence                                                          0100        01111   12478999999999


Q ss_pred             eCCCCCEEEEecCCeEEEEEccCCCceeEEe-----------------------------ecC----CCCCCCCCCcEEE
Q 011368          212 NNSDCETFVSADDLRINLWNLEISDQCFNIV-----------------------------DMK----PSNMDDLTEVITS  258 (487)
Q Consensus       212 ~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~----~~~~~~~~~~v~~  258 (487)
                      ++.+...+++|..+.|++|+..+ .++++++                             ++.    ..+.++|.+.|++
T Consensus       381 vS~d~~~~~Sga~~SikiWn~~t-~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWs  459 (888)
T KOG0306|consen  381 VSSDSILLASGAGESIKIWNRDT-LKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWS  459 (888)
T ss_pred             eecCceeeeecCCCcEEEEEccC-cceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceee
Confidence            99998888888889999999984 3444433                             110    1234679999999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCcccc-ccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeE
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  336 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i  336 (487)
                      ++.+|++ ..+++|+.|.+|++||+.--.... ...+.+..|.      ...-..+..|.++.+||||++|+.+ -|+++
T Consensus       460 i~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV  532 (888)
T KOG0306|consen  460 ISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTV  532 (888)
T ss_pred             eeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeecc------ceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence            9999999 999999999999999986421100 0001111100      0001125689999999999999998 47999


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      +||-+.+ -+..-.+-+|.-++               .++.+|||++.++|||.|..|+||-+.-| .+...+-+|.+.|
T Consensus       533 kVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSv  595 (888)
T KOG0306|consen  533 KVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSV  595 (888)
T ss_pred             EEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCce
Confidence            9999987 78888888999876               69999999999999999999999999887 6788999999999


Q ss_pred             ccceEeeCCccccccccceeeecccce-ecCCC--CCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  486 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~  486 (487)
                      ..+.|.|  +...     +.+++.|+. +-|+.  -+.+..+.+|...|.+++.+|+|.+++++|.| .+.+|.
T Consensus       596 m~V~F~P--~~~~-----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  596 MSVQFLP--KTHL-----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             eEEEEcc--ccee-----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            9999999  5555     899999999 99943  45667788999999999999999999999964 588885

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=256.50  Aligned_cols=372  Identities=16%  Similarity=0.148  Sum_probs=280.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCcccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKS  109 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~  109 (487)
                      ..+.+++++.+||+++|++++..+.+++|++.+++.                           ++++++ |+        
T Consensus        61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~---------------------------irswKa~He--------  105 (775)
T KOG0319|consen   61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL---------------------------IRSWKAIHE--------  105 (775)
T ss_pred             chhhhheeeecCCccEEEEeeccceEEEEEcccchH---------------------------hHhHhhccC--------
Confidence            356799999999999999999999999999998865                           467777 87        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc-cccccCCCCcceeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSFAHGYHL  188 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  188 (487)
                          ++|..++|  .|.+.++++|+.|+.+++||+..+.+....+. +...++.+.|++.... ++.++..+....    
T Consensus       106 ----~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~sg~~D~~v~----  174 (775)
T KOG0319|consen  106 ----APVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLASGATDGTVR----  174 (775)
T ss_pred             ----CCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheeecCCCceEE----
Confidence                99999999  56788999999999999999998877665433 2334666666654443 344444333322    


Q ss_pred             eeecc---ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEe----------------------
Q 011368          189 EWTEN---MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV----------------------  242 (487)
Q Consensus       189 ~~~~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~----------------------  242 (487)
                      .|+..   .+..+ +..|.+.|+++++++|+..++++ +|..|.+||+...+ ...++                      
T Consensus       175 vwnl~~~~tcl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~-~l~~lp~ye~~E~vv~l~~~~~~~~~~  252 (775)
T KOG0319|consen  175 VWNLNDKRTCLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK-KLKTLPLYESLESVVRLREELGGKGEY  252 (775)
T ss_pred             EEEcccCchHHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh-hhheechhhheeeEEEechhcCCcceE
Confidence            24332   12333 48899999999999999988887 99999999986311 11000                      


Q ss_pred             --------------------------------------------------------------------------------
Q 011368          243 --------------------------------------------------------------------------------  242 (487)
Q Consensus       243 --------------------------------------------------------------------------------  242 (487)
                                                                                                      
T Consensus       253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l  332 (775)
T KOG0319|consen  253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL  332 (775)
T ss_pred             EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence                                                                                            


Q ss_pred             ----------------------ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccc
Q 011368          243 ----------------------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  300 (487)
Q Consensus       243 ----------------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  300 (487)
                                            .....-+.+|...|.+++...+| .+|++|+.|.++++|.++++......+...    
T Consensus       333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~----  407 (775)
T KOG0319|consen  333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQA----  407 (775)
T ss_pred             CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhh----
Confidence                                  00001235788888888866677 899999999999999885543221112222    


Q ss_pred             cccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeCCCCC--ceee------eeecccccccccccccCCCCc
Q 011368          301 ESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDS--TPVA------TFKIHEHLRPKLCDLYNNDSI  370 (487)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~  370 (487)
                               .+|.+.|.+++++..+. ++++++ |+++++|++....  ....      ....|..              
T Consensus       408 ---------~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK--------------  464 (775)
T KOG0319|consen  408 ---------NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK--------------  464 (775)
T ss_pred             ---------cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc--------------
Confidence                     45789999999987654 666764 7999999997511  1111      2233443              


Q ss_pred             ceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC
Q 011368          371 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       371 ~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                       +|++++++|+.++|||||.|.+.+||+++.. ....++.+|+.-+.++.|++  ..+.     +++++.|.. ++|+..
T Consensus       465 -dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~--~dq~-----laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  465 -DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSK--NDQL-----LATCSGDKTVKIWSIS  535 (775)
T ss_pred             -cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecc--ccce-----eEeccCCceEEEEEec
Confidence             2369999999999999999999999999955 67899999999999999998  4555     999999999 999544


Q ss_pred             --CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          450 --GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       450 --~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                        .-+.++.+|+..|..+.|-.+|+.|++++.|| +.+|+.
T Consensus       536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence              44566779999999999999999999999887 788973

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.1e-32  Score=247.08  Aligned_cols=280  Identities=23%  Similarity=0.425  Sum_probs=226.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|.++|++++|+|++++|++++.||.|++|++.+++.                           ...+.+|.        
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~--------   51 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHT--------   51 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCC--------
Confidence            5889999999999999999999999999999987643                           35677787        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..+..+.|  .++++++++++.|+.|++|++.+++....                                     
T Consensus        52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~-------------------------------------   88 (289)
T cd00200          52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRT-------------------------------------   88 (289)
T ss_pred             ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEE-------------------------------------
Confidence                77889999  46778999999999999999987643322                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +..|...+.++.|++++++++++ .++.|.+||+.+.. ....       +..|...+.++.|+|++ .+
T Consensus        89 ----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~-------~~~~~~~i~~~~~~~~~-~~  149 (289)
T cd00200          89 ----------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTT-------LRGHTDWVNSVAFSPDG-TF  149 (289)
T ss_pred             ----------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEE-------eccCCCcEEEEEEcCcC-CE
Confidence                      25778899999999999999998 69999999998433 3322       34688889999999997 88


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      +++++.++.|++||+++++..    ..+..             |...+.++.|+|+++.+++++ ++.|++||++. +..
T Consensus       150 l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~  211 (289)
T cd00200         150 VASSSQDGTIKLWDLRTGKCV----ATLTG-------------HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKC  211 (289)
T ss_pred             EEEEcCCCcEEEEEccccccc----eeEec-------------CccccceEEECCCcCEEEEecCCCcEEEEECCC-Cce
Confidence            888888999999999876544    44444             356899999999998888775 69999999986 777


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  427 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  427 (487)
                      +..+..+...+               .+++|+|++.++++++.||.|++|++.+++. ...+.                 
T Consensus       212 ~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~-----------------  258 (289)
T cd00200         212 LGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLS-----------------  258 (289)
T ss_pred             ecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEcc-----------------
Confidence            77776666533               5899999999999888899999999986522 22121                 


Q ss_pred             ccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          428 RRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                   .|...|.+++|+|+++.|++++.|+ +.+|.
T Consensus       259 -----------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         259 -----------------------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -----------------------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                                         3334788999999999999888664 77774

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.3e-34  Score=266.98  Aligned_cols=266  Identities=16%  Similarity=0.228  Sum_probs=215.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc-eeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  192 (487)
                      ..++|..|  ++++.+||.|-.|..|++|.+...+++.++....-...                ...... ......-+.
T Consensus       379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~----------------d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI----------------DTESADVDVDMLDDDS  440 (707)
T ss_pred             CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc----------------cccccchhhhhccccC
Confidence            67899999  68888999999999999999987655444321110000                000000 000011111


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                      ....+. +.+|.++|+..+|+|+.++|++| .|+++++|.+.+... ...       ..+|..+|+.+.|+|.| .++|+
T Consensus       441 ~~~~~~-L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~-------y~GH~~PVwdV~F~P~G-yYFat  510 (707)
T KOG0263|consen  441 SGTSRT-LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVI-------YKGHLAPVWDVQFAPRG-YYFAT  510 (707)
T ss_pred             CceeEE-eecCCCceeeeeecccccceeeccCCcceeeeeccccee-EEE-------ecCCCcceeeEEecCCc-eEEEe
Confidence            222333 48999999999999999999999 999999999995543 332       47999999999999999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      ++.|++-++|........    ++|.+|             -+.|.|+.|+|++.|+++|+ |.++|+||+.+ +..++.
T Consensus       511 as~D~tArLWs~d~~~Pl----Rifagh-------------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRi  572 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKPL----RIFAGH-------------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRI  572 (707)
T ss_pred             cCCCceeeeeecccCCch----hhhccc-------------ccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEE
Confidence            999999999998875544    677764             78999999999999999996 69999999997 999999


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccc
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  430 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  430 (487)
                      |.+|..++               ++++|||+|++|++|+.||.|.+||+.++ ..+..+.+|.+.+.++.|+.  ++.+ 
T Consensus       573 F~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~--dg~v-  633 (707)
T KOG0263|consen  573 FTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSR--DGNV-  633 (707)
T ss_pred             ecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEec--CCCE-
Confidence            99999876               69999999999999999999999999988 55888999999999999987  7888 


Q ss_pred             cccceeeecccce-ecCCC
Q 011368          431 SLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       431 ~~~~l~~g~~~~~-~~w~~  448 (487)
                          |++|+.|.. ++|+.
T Consensus       634 ----Lasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  634 ----LASGGADNSVRLWDL  648 (707)
T ss_pred             ----EEecCCCCeEEEEEc
Confidence                999999999 99943

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.2e-35  Score=245.37  Aligned_cols=234  Identities=13%  Similarity=0.277  Sum_probs=199.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ..+.|+|+++.  ...+++|..|++|+|||.++.++                           ...+.||+         
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c---------------------------~~~L~GHt---------  237 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC---------------------------LKILTGHT---------  237 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHH---------------------------HHhhhcCC---------
Confidence            46789999985  45789999999999999876554                           57899999         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         +.|.|+.|    +.+.+++|+.|.+|++||++++++...                                      
T Consensus       238 ---GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t--------------------------------------  272 (499)
T KOG0281|consen  238 ---GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT--------------------------------------  272 (499)
T ss_pred             ---CcEEeeec----cceEEEecCCCceEEEEeccCCchhhH--------------------------------------
Confidence               99999999    356999999999999999999986654                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                               +..|...|..+.|+  ..+++++ .|.+|.+||+..+... .+    .+.+.+|...|..+.|+.   ++|
T Consensus       273 ---------lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i-t~----rrVLvGHrAaVNvVdfd~---kyI  333 (499)
T KOG0281|consen  273 ---------LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI-TL----RRVLVGHRAAVNVVDFDD---KYI  333 (499)
T ss_pred             ---------HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-HH----HHHHhhhhhheeeecccc---ceE
Confidence                     37899999999998  4688888 9999999999865421 11    135679999999999974   699


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      ++++.|++|++|++.+.+.+    +++.+|             ...|.|+.+.  |+++++|+ |.+|++||+.. +.++
T Consensus       334 VsASgDRTikvW~~st~efv----Rtl~gH-------------kRGIAClQYr--~rlvVSGSSDntIRlwdi~~-G~cL  393 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFV----RTLNGH-------------KRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACL  393 (499)
T ss_pred             EEecCCceEEEEeccceeee----hhhhcc-------------cccceehhcc--CeEEEecCCCceEEEEeccc-cHHH
Confidence            99999999999999998766    777774             7788888875  88999985 69999999997 9999


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      +.+.+|+..+               .++.|  |.+.|++|+.||+|+|||+.++.
T Consensus       394 RvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  394 RVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             HHHhchHHhh---------------hheee--cCceeeeccccceEEEEeccccc
Confidence            9999999876               57888  57789999999999999998873

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1e-31  Score=237.75  Aligned_cols=334  Identities=16%  Similarity=0.225  Sum_probs=257.0

Q ss_pred             CCCCccccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368           23 RNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (487)
Q Consensus        23 ~~~~~~~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (487)
                      ...++..+|...|++++|-|... ++++|+.|++|.+|+                           .|++++..+++.|.
T Consensus       138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---------------------------GPPFKFk~s~r~Hs  190 (603)
T KOG0318|consen  138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---------------------------GPPFKFKSSFREHS  190 (603)
T ss_pred             CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---------------------------CCCeeeeecccccc
Confidence            44677888999999999999875 589999999999998                           56999999999999


Q ss_pred             cccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                                  .-|++++|  +|||.+|++++.||.+.+||-.+++.......                          
T Consensus       191 ------------kFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~--------------------------  230 (603)
T KOG0318|consen  191 ------------KFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELED--------------------------  230 (603)
T ss_pred             ------------cceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------------------
Confidence                        88999999  68999999999999999999999887655321                          


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEe------------------
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV------------------  242 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~------------------  242 (487)
                                        -.+|.+.|.+++|+||++.++++ .|.+++|||+.+.. +.+.+                  
T Consensus       231 ------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  231 ------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             ------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEEEeCC
Confidence                              15899999999999999999999 99999999998542 22222                  


Q ss_pred             ------------------ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccC
Q 011368          243 ------------------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  304 (487)
Q Consensus       243 ------------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~  304 (487)
                                        ...+..+.+|+..|+++..+|++ ++|++|+.||.|.-||..++...    +.. +      
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~----~~~-g------  359 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSD----RLA-G------  359 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCcccc----ccc-c------
Confidence                              11234567899999999999999 99999999999999999987632    221 1      


Q ss_pred             ccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCce-eeeeecccccccccccccCCCCcceeeEEEEcCCCC
Q 011368          305 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  383 (487)
Q Consensus       305 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  383 (487)
                           ..|...|.+++-+..+.++.+|-|.++++.++...+-. ...++....+                ..++..+++.
T Consensus       360 -----~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP----------------~~lav~~d~~  418 (603)
T KOG0318|consen  360 -----KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP----------------KGLAVLSDGG  418 (603)
T ss_pred             -----ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc----------------eeEEEcCCCC
Confidence                 34688999999998888888888899999998642111 1112222222                2788888887


Q ss_pred             EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCC----cccccccc
Q 011368          384 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHELSYNL  458 (487)
Q Consensus       384 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~----~~~~~~~~  458 (487)
                      .++..+.++.+.+=+.. +   ..++. -.-...+++++|  ++..     .+.|+.|+. ++++..+    .......|
T Consensus       419 ~avv~~~~~iv~l~~~~-~---~~~~~-~~y~~s~vAv~~--~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h  486 (603)
T KOG0318|consen  419 TAVVACISDIVLLQDQT-K---VSSIP-IGYESSAVAVSP--DGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEH  486 (603)
T ss_pred             EEEEEecCcEEEEecCC-c---ceeec-cccccceEEEcC--CCCE-----EEEecccceEEEEEecCCcccceeeeecc
Confidence            77777766554443333 2   11111 122334777777  5555     899999999 9984332    23356789


Q ss_pred             CCCeEEEEEcCCCCEEEEecCC-eEEEEeC
Q 011368          459 SSKLLHLAWHPTTNLIACANGN-SLFFHYA  487 (487)
Q Consensus       459 ~~~v~~~~~spd~~~la~~s~~-~~~i~~~  487 (487)
                      ..+|+.+++|||+.+||++... .+.+|++
T Consensus       487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~  516 (603)
T KOG0318|consen  487 RAAITDVAYSPDGAYLAAGDASRKVVLYDV  516 (603)
T ss_pred             cCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence            9999999999999999999855 4777863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.5e-32  Score=276.98  Aligned_cols=304  Identities=20%  Similarity=0.291  Sum_probs=223.0

Q ss_pred             CccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      +....|.+.|.+++|+|+|++||+|+.|+.|+||+.......      ..            . .......+.+ .    
T Consensus       477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~------~~------------~-~~~~~~~~~~-~----  532 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD------GR------------D-IHYPVVELAS-R----  532 (793)
T ss_pred             ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc------cc------------c-cccceEEecc-c----
Confidence            345668999999999999999999999999999997542110      00            0 0001122222 2    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ..|.+++|++ +++.+|++++.|++|++||+.+++....                                 
T Consensus       533 --------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~---------------------------------  570 (793)
T PLN00181        533 --------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTE---------------------------------  570 (793)
T ss_pred             --------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------
Confidence                    6689999974 4578999999999999999987764433                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                    +.+|...|++++|+| ++.+|++| .|+.|++||+++. .....+       . +...+.++.|++
T Consensus       571 --------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~-------~-~~~~v~~v~~~~  627 (793)
T PLN00181        571 --------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTI-------K-TKANICCVQFPS  627 (793)
T ss_pred             --------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEE-------e-cCCCeEEEEEeC
Confidence                          378999999999997 78899999 9999999999844 444332       2 235689999965


Q ss_pred             -CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368          264 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       264 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~  341 (487)
                       ++ .+|++|+.||.|++||+++....   ...+.+             |...|.++.|. ++.+|++++ |+.|++||+
T Consensus       628 ~~g-~~latgs~dg~I~iwD~~~~~~~---~~~~~~-------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        628 ESG-RSLAFGSADHKVYYYDLRNPKLP---LCTMIG-------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             CCC-CEEEEEeCCCeEEEEECCCCCcc---ceEecC-------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence             56 99999999999999999875421   133344             57899999997 677888775 699999999


Q ss_pred             CCC-----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe-ccCCc
Q 011368          342 RMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNE  415 (487)
Q Consensus       342 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~~  415 (487)
                      +..     ..++..+.+|...+               ..++|+|++.+|++|+.|+.|++|+....... ..+. .+...
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~-~s~~~~~~~~  753 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPMPV-LSYKFKTIDP  753 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCCce-EEEecccCCc
Confidence            742     25677788877644               58999999999999999999999998755221 1110 00000


Q ss_pred             cccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      +..                                  .....+...|.+++|+|++..|++|+.++ +.||.
T Consensus       754 ~~~----------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        754 VSG----------------------------------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             ccc----------------------------------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            000                                  01123455799999999999999988655 88886

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-33  Score=236.21  Aligned_cols=274  Identities=14%  Similarity=0.215  Sum_probs=237.8

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .+|+.+-|+  |+-..+++++.|++|++||..++++...                                         
T Consensus       109 ~~vt~v~~h--p~~~~v~~as~d~tikv~D~~tg~~e~~-----------------------------------------  145 (406)
T KOG0295|consen  109 SSVTRVIFH--PSEALVVSASEDATIKVFDTETGELERS-----------------------------------------  145 (406)
T ss_pred             cceeeeeec--cCceEEEEecCCceEEEEEccchhhhhh-----------------------------------------
Confidence            889999996  5667888899999999999999986443                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|.+.+.+++|+..|++++++ .|-.+++||......+.+       .+.+|...|.++.|-|.| .+|+++
T Consensus       146 ------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-------s~~gh~h~vS~V~f~P~g-d~ilS~  211 (406)
T KOG0295|consen  146 ------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-------SLIGHEHGVSSVFFLPLG-DHILSC  211 (406)
T ss_pred             ------hhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-------HhcCcccceeeEEEEecC-Ceeeec
Confidence                  58999999999999999999999 998899999986544443       357899999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~  351 (487)
                      +.|.+|+.|++.++-.+    ++|.+|             ..+|..+..+.||.++++++ |.+|++|-+.+ +.+...+
T Consensus       212 srD~tik~We~~tg~cv----~t~~~h-------------~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~l  273 (406)
T KOG0295|consen  212 SRDNTIKAWECDTGYCV----KTFPGH-------------SEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAEL  273 (406)
T ss_pred             ccccceeEEecccceeE----EeccCc-------------hHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhh
Confidence            99999999999999766    777774             77999999999999999986 59999999987 8788888


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcC---------------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSG---------------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      +.|+.++.               +++|.|               .++++.+++.|++|++||+.++ .++.++.+|.++|
T Consensus       274 R~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwV  337 (406)
T KOG0295|consen  274 REHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWV  337 (406)
T ss_pred             hccccceE---------------EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEeccccee
Confidence            88888763               444433               2369999999999999999999 7799999999999


Q ss_pred             ccceEeeCCccccccccceeeecccce-ecCC--CCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEE
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFH  485 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~  485 (487)
                      +.++|+|  .|++     |++...|+. ++|+  ..+.......|+.-|+.++|+.+..++++|+-| ...+|
T Consensus       338 r~~af~p--~Gky-----i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  338 RGVAFSP--GGKY-----ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             eeeEEcC--CCeE-----EEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence            9999999  7888     999999999 9994  445555667899999999999999999999955 47776

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-33  Score=226.76  Aligned_cols=280  Identities=15%  Similarity=0.179  Sum_probs=232.7

Q ss_pred             ccccCcEEEEEEcC---CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           29 LQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        29 ~~h~~~V~~~~~s~---~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      .+|+.+|-.++|||   +|-+|++++.|+.-.+-+-+++.-                           +.+|.||.    
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw---------------------------igtfeghk----   59 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW---------------------------IGTFEGHK----   59 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc---------------------------EEeeeccC----
Confidence            45899999999986   889999999999888777666653                           68999999    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ++|.....  +.+-.+-++++.|-+-++||.-+|..+..                                 
T Consensus        60 --------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs---------------------------------   96 (334)
T KOG0278|consen   60 --------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS---------------------------------   96 (334)
T ss_pred             --------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh---------------------------------
Confidence                    99999988  45666778899999999999988875543                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                     ..|...|..++|+.|.+.|++| .+..++++|++.....       +..+.+|.+.|..+.|...
T Consensus        97 ---------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   97 ---------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-------PKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             ---------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-------chhhcCCCCcceeEEEecc
Confidence                           4788899999999999999999 9999999999965543       3467899999999999988


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD  344 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~  344 (487)
                      . +.|++++.|++||+||.+++...    +.+..              ...|+++.++++|++|..+..+.|.+||..+ 
T Consensus       155 D-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaks-  214 (334)
T KOG0278|consen  155 D-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKS-  214 (334)
T ss_pred             C-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEEEEecCceeEEecccc-
Confidence            7 89999999999999999999866    55554              4689999999999999888779999999987 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      ..+++.++.+...                .+..++|+...+++|+.|+.++.||..++.++....++|.++|-++.|+| 
T Consensus       215 f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-  277 (334)
T KOG0278|consen  215 FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-  277 (334)
T ss_pred             ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-
Confidence            7778777766543                48999999999999999999999999999775544467777666666666 


Q ss_pred             Cccccccccceeeecccce-ecCC
Q 011368          425 PRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                       +|..     -++|+.||. ++|.
T Consensus       278 -dGE~-----yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  278 -DGEL-----YASGSEDGTIRLWQ  295 (334)
T ss_pred             -CCce-----eeccCCCceEEEEE
Confidence             4544     566666666 6663

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.3e-34  Score=248.35  Aligned_cols=286  Identities=15%  Similarity=0.168  Sum_probs=233.9

Q ss_pred             cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..+|+..|+++.|.| .+.+|++|+.|+.|+||++.+.                          .++++++.+|.     
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~-----  258 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHR-----  258 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcch-----
Confidence            446899999999999 8899999999999999998763                          23579999999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             .+|..++|  +.+|..|++++.|+.|++||+++|+.....                                 
T Consensus       259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---------------------------------  296 (503)
T KOG0282|consen  259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRF---------------------------------  296 (503)
T ss_pred             -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEE---------------------------------
Confidence                   99999999  689999999999999999999999876541                                 


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                     .....++|+.|.|++ +.+++| .|+.|+.||+++++ .+       +.+..|-+.|..+.|-++
T Consensus       297 ---------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vv-------qeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  297 ---------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VV-------QEYDRHLGAILDITFVDE  353 (503)
T ss_pred             ---------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HH-------HHHHhhhhheeeeEEccC
Confidence                           234557899999988 778888 99999999999554 33       245678899999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      | ..++++++|+.++||+.+..-.+.. +....               .-...++..+|++.++++-+ |+.|.++.+..
T Consensus       354 g-~rFissSDdks~riWe~~~~v~ik~-i~~~~---------------~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  354 G-RRFISSSDDKSVRIWENRIPVPIKN-IADPE---------------MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             C-ceEeeeccCccEEEEEcCCCccchh-hcchh---------------hccCcceecCCCCCeehhhccCceEEEEeccc
Confidence            9 9999999999999999988654311 11111               23678899999999999865 69999998753


Q ss_pred             C--CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368          344 D--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  421 (487)
Q Consensus       344 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  421 (487)
                      .  ......+.+|...-.          -   ..+.|||||++|++|+.||.+.+||.++- .+...+++|..++..+.+
T Consensus       417 ~~r~nkkK~feGh~vaGy----------s---~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  417 PFRLNKKKRFEGHSVAGY----------S---CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             ccccCHhhhhcceeccCc----------e---eeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEe
Confidence            2  233455666654321          1   47999999999999999999999999987 558899999999999999


Q ss_pred             eeCCccccccccceeeecccce-ecC
Q 011368          422 QAAPRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       422 ~~~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      .|....+      +++++-+|. ++|
T Consensus       483 HP~e~Sk------vat~~w~G~Ikiw  502 (503)
T KOG0282|consen  483 HPVEPSK------VATCGWDGLIKIW  502 (503)
T ss_pred             cCCCcce------eEecccCceeEec
Confidence            9975444      688888888 887

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-32  Score=254.26  Aligned_cols=276  Identities=20%  Similarity=0.339  Sum_probs=206.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCC--------------------CCcccchhhhhccccc------
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT--------------------PNQHISRSELEKQMDF------   83 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------------------~~~~~~~~~~~~~~~~------   83 (487)
                      .|.+.|+++.||+||+|||+|+.|+.|+||.+...+..                    .+.......+.+....      
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            69999999999999999999999999999998762110                    0000000000000000      


Q ss_pred             --c-----ccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC
Q 011368           84 --T-----STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  156 (487)
Q Consensus        84 --~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  156 (487)
                        .     -.+.=..+++..|+||.            +.|..|.|+   ...+|++++.|++||||++...++++.    
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~----  405 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV----  405 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheecccc---cCCeeEeccccccEEeecCCCcceeeE----
Confidence              0     01111235677889998            889999993   467999999999999999998876654    


Q ss_pred             CCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccC
Q 011368          157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEI  234 (487)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~  234 (487)
                                                                  -.|.+-|+|++|+| |.++|++| -|+.|+||++. 
T Consensus       406 --------------------------------------------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~-  440 (712)
T KOG0283|consen  406 --------------------------------------------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS-  440 (712)
T ss_pred             --------------------------------------------EecCCeeEEEEecccCCCcEeecccccceEEeecC-
Confidence                                                        48999999999999 88999999 99999999998 


Q ss_pred             CCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc
Q 011368          235 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  314 (487)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  314 (487)
                      ..+.+.        ......-|++++|.|+| +..+.|+.+|.+++|+.+..++.    ..+.-+.  ...+ . ..|. 
T Consensus       441 d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~----~~~~I~~--~~~K-k-~~~~-  502 (712)
T KOG0283|consen  441 DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLV----SDFHIRL--HNKK-K-KQGK-  502 (712)
T ss_pred             cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEE----EeeeEee--ccCc-c-ccCc-
Confidence            333332        23344779999999999 99999999999999999886643    2222210  0000 0 1122 


Q ss_pred             ceeEEEEcCCC--CEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          315 SISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       315 ~v~~v~~s~~~--~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      .|+.+.|.|..  +.|++..|..|||||.+. ..++..|++.......             ....|+.||++|+++++|.
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeEccCCCEEEEeecCc
Confidence            79999998754  378888899999999986 8889999987664321             3789999999999999999


Q ss_pred             cEEEEEeCC
Q 011368          393 LLRIFSHGV  401 (487)
Q Consensus       393 ~i~iwd~~~  401 (487)
                      .|+||+...
T Consensus       569 ~VYiW~~~~  577 (712)
T KOG0283|consen  569 WVYIWKNDS  577 (712)
T ss_pred             eEEEEeCCC
Confidence            999999843

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.1e-33  Score=242.84  Aligned_cols=290  Identities=20%  Similarity=0.331  Sum_probs=233.1

Q ss_pred             ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      -+.+.++.||.            ..|+++.|.| ..+.+|++++.|+.|+||++....                      
T Consensus       204 kk~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~----------------------  248 (503)
T KOG0282|consen  204 KKLSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDR----------------------  248 (503)
T ss_pred             HhheeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecCc----------------------
Confidence            34568899999            9999999975 368999999999999999998732                      


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                             .++++| .+|..+|.+++|+++|..+.++ .|+.|++||++++. +...+       
T Consensus       249 -----------------------~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~-~~~~f-------  296 (503)
T KOG0282|consen  249 -----------------------RCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ-VLSRF-------  296 (503)
T ss_pred             -----------------------ceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccccce-EEEEE-------
Confidence                                   244444 8999999999999999999999 99999999999654 44332       


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                       .....++|+.|+|++++.+++|+.|+.|+.||+++++.+    +.+..             |-+.|..+.|-++|+.++
T Consensus       297 -~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~-------------hLg~i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  297 -HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR-------------HLGAILDITFVDEGRRFI  358 (503)
T ss_pred             -ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-------------hhhheeeeEEccCCceEe
Confidence             234567999999999899999999999999999999866    55554             367899999999999999


Q ss_pred             EEeC-CeEEEEeCCCCCceeeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC--ce
Q 011368          330 SRDY-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--AG  405 (487)
Q Consensus       330 s~~d-~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~--~~  405 (487)
                      +.+| ++++||+.+. ..++..+..+. ...               .++..+|+++++++-+.|+.|.++.+...-  ..
T Consensus       359 ssSDdks~riWe~~~-~v~ik~i~~~~~hsm---------------P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRI-PVPIKNIADPEMHTM---------------PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             eeccCccEEEEEcCC-CccchhhcchhhccC---------------cceecCCCCCeehhhccCceEEEEecccccccCH
Confidence            8865 9999999986 44444332221 111               389999999999999999999999976532  23


Q ss_pred             eEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCC-CEEEEecCCe
Q 011368          406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT-NLIACANGNS  481 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~-~~la~~s~~~  481 (487)
                      ...+++|..+-.++....+.||.+     |++|..+|. .+|  ++..+......|++.+..+.|||-. ..+|+++-+|
T Consensus       423 kK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             hhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence            567888887766555544458998     999999999 888  6666777778899999999999986 5688888555


Q ss_pred             -EEEEe
Q 011368          482 -LFFHY  486 (487)
Q Consensus       482 -~~i~~  486 (487)
                       +++|.
T Consensus       498 ~Ikiwd  503 (503)
T KOG0282|consen  498 LIKIWD  503 (503)
T ss_pred             eeEecC
Confidence             88884

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.7e-31  Score=227.25  Aligned_cols=273  Identities=19%  Similarity=0.296  Sum_probs=212.8

Q ss_pred             CCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368           22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (487)
Q Consensus        22 ~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (487)
                      .+.+.+.+.|.+-|.++...  +++|++|++||.++|||..+.                            ...++.||.
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------~~~~~~Ght  144 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------SIKTIVGHT  144 (423)
T ss_pred             CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------eEEEEecCC
Confidence            44556677799999999988  789999999999999997654                            358899999


Q ss_pred             cccccccccccccceeEEEEEe-cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCC
Q 011368          102 PEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (487)
Q Consensus       102 ~~~~~~~~~~~~~~I~~v~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (487)
                                  ++|.+++|.- ++....|++++.|.++++|.++.+......                           
T Consensus       145 ------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~---------------------------  185 (423)
T KOG0313|consen  145 ------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA---------------------------  185 (423)
T ss_pred             ------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------------------
Confidence                        9999999863 222346999999999999999877543210                           


Q ss_pred             CcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-CceeEE----------------e
Q 011368          181 SFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNI----------------V  242 (487)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-~~~~~~----------------~  242 (487)
                                     ... ..||...|.+++..++|..+++| .|..|+||+..+. ...++-                .
T Consensus       186 ---------------~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  186 ---------------LKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             ---------------HhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence                           000 25999999999999999999999 9999999993321 000100                0


Q ss_pred             ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                      +.+...+.+|...|.++.|++.  ..+++++.|.+|+.||+.++...    ..+..              ...+.++.++
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~----~~~~~--------------~ksl~~i~~~  309 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK----STLTT--------------NKSLNCISYS  309 (423)
T ss_pred             cCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccce----eeeec--------------CcceeEeecc
Confidence            1122357899999999999984  69999999999999999998765    34444              4689999999


Q ss_pred             CCCCEEEEEe-CCeEEEEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEE
Q 011368          323 NDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFS  398 (487)
Q Consensus       323 ~~~~~l~s~~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd  398 (487)
                      |..++|++|+ |..|++||.++..  .....+.+|.+.+               .++.|+|.. .+|++|+.|+++++||
T Consensus       310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCceEEEEEecCCeEEEEE
Confidence            9999999985 7999999998743  3456788999876               589999954 5688999999999999


Q ss_pred             eCCCCceeEEEeccCC
Q 011368          399 HGVGSAGGITVEAGKN  414 (487)
Q Consensus       399 ~~~~~~~~~~~~~~~~  414 (487)
                      +++.+..+..+.+|.+
T Consensus       375 vRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  375 VRSTKAPLYDIAGHND  390 (423)
T ss_pred             eccCCCcceeeccCCc
Confidence            9987555555555544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=236.34  Aligned_cols=311  Identities=19%  Similarity=0.295  Sum_probs=223.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|+..|+++++.|.|..|++|+.|.+|++||+......                    -+.++.+.-...|       
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~h-------  215 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCETH-------  215 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCccccc-------
Confidence            4456889999999999999999999999999999877531                    1112222223344       


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                             .|.+++|  ++.|..|++.+.....+|+|-.+.+.....+.....                          . 
T Consensus       216 -------~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI--------------------------~-  259 (641)
T KOG0772|consen  216 -------QINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI--------------------------R-  259 (641)
T ss_pred             -------ccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeeccchhh--------------------------h-
Confidence                   4999999  567888988888899999998877665553322111                          0 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                             .... ..+|...++|.+|+|. .+.++++ .||+++|||++......+++..+  ...+..-.++.++|+|+|
T Consensus       260 -------Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--~~~g~Rv~~tsC~~nrdg  329 (641)
T KOG0772|consen  260 -------DMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--PAGGKRVPVTSCAWNRDG  329 (641)
T ss_pred             -------hhhc-cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec--cCCCcccCceeeecCCCc
Confidence                   0000 2799999999999995 4456677 99999999999776666554322  233445578999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc--ceeEEEEcCCCCEEEEE-eCCeEEEEeCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR-DYMNLKLWDIR  342 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~s~-~d~~i~iwd~~  342 (487)
                       +.||+|..||.|.+|+.++.... -..+.-..             |..  .|++|.||+||++|++. .|+++++||++
T Consensus       330 -~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~A-------------H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  330 -KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDA-------------HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             -chhhhcccCCceeeeecCCcccc-cceEeeec-------------cCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence             99999999999999998653311 11122223             344  89999999999999996 57999999999


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      ...+++....+-...-             .-+.++|||+.++|++|+.      .|.+.+||..+-.. ++.+...    
T Consensus       395 q~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~-v~ki~i~----  456 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT-VYKIDIS----  456 (641)
T ss_pred             ccccchhhhcCCCccC-------------CCCccccCCCceEEEecccccCCCCCceEEEEeccceee-EEEecCC----
Confidence            8778877766544321             1258999999999999864      36788888776522 2222211    


Q ss_pred             ccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                                ...|..+.|||.-+.|.+++.|+ ++||+
T Consensus       457 ------------------------------------------~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  457 ------------------------------------------TASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             ------------------------------------------CceEEEEeecchhhheeeecCCCceEEEE
Confidence                                                      22667788888888777777554 67664

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.5e-32  Score=226.92  Aligned_cols=291  Identities=15%  Similarity=0.225  Sum_probs=235.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...+-|..|||||+||++|+.||-|.+|+..+++.       ++.|            .|+....|.-+.          
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl-------rKDL------------kYQAqd~fMMmd----------  263 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL-------RKDL------------KYQAQDNFMMMD----------  263 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchh-------hhhh------------hhhhhcceeecc----------
Confidence            45688999999999999999999999999999875       3333            122223333344          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .+|.|+.|  +.|...+++|+.||.|++|.+.+|.+.+.                                       
T Consensus       264 --~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRr---------------------------------------  300 (508)
T KOG0275|consen  264 --DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRR---------------------------------------  300 (508)
T ss_pred             --cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHH---------------------------------------
Confidence              89999999  67889999999999999999999975443                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             +-..|...|+|+.|+.|+..+.++ .|.++++.-++. +++++       .+.+|.+.|+...|.++| ..++
T Consensus       301 -------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LK-------EfrGHsSyvn~a~ft~dG-~~ii  364 (508)
T KOG0275|consen  301 -------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLK-------EFRGHSSYVNEATFTDDG-HHII  364 (508)
T ss_pred             -------hhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHH-------HhcCccccccceEEcCCC-CeEE
Confidence                   336899999999999999999999 999999999994 44443       578999999999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCCCCcee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      +++.||+|++|+..+.++.    .+|..           .+...+|+++..-|.+ ..++.|. .++|+|.++.  +..+
T Consensus       365 saSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvV  427 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVV  427 (508)
T ss_pred             EecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEE
Confidence            9999999999999998765    55554           1225678888877754 4566665 4999999985  7888


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  428 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  428 (487)
                      +.+......-.            +..+.+.||.|.++.+.+.|+.++.+.+.+| ....++..|...+..++-.|.++  
T Consensus       428 rsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHPHqN--  492 (508)
T KOG0275|consen  428 RSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHPHQN--  492 (508)
T ss_pred             eeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCcccc--
Confidence            88875543211            1248999999999999999999999999998 45788899999888888888532  


Q ss_pred             cccccceeeecccce-ecCC
Q 011368          429 RSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       429 ~~~~~~l~~g~~~~~-~~w~  447 (487)
                      .     +++-+.|+. ++|.
T Consensus       493 l-----lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 L-----LASYSEDGLLKLWK  507 (508)
T ss_pred             h-----hhhhcccchhhhcC
Confidence            2     889999999 9994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-31  Score=214.04  Aligned_cols=277  Identities=18%  Similarity=0.272  Sum_probs=218.9

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      +...|...|.+++|+.+|..|++|+.|+++.+|+++..+.                         ..-....+|.     
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-------------------------~~~~~~~gh~-----   64 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-------------------------RKELVYRGHT-----   64 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-------------------------hhhhcccCCC-----
Confidence            4456888999999999999999999999999999986632                         1224467888     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|..++|.| +...+|++++.|.+|++||+..++.....                                 
T Consensus        65 -------~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i---------------------------------  103 (313)
T KOG1407|consen   65 -------DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARI---------------------------------  103 (313)
T ss_pred             -------cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEe---------------------------------
Confidence                   8899999987 55678999999999999999998865542                                 


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                     .....=.-+.|+|+|++++.+ .|..|.+.|.++. +...        -+.....+..+.|+-++
T Consensus       104 ---------------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~--------~~~~~~e~ne~~w~~~n  159 (313)
T KOG1407|consen  104 ---------------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTY-KIVN--------EEQFKFEVNEISWNNSN  159 (313)
T ss_pred             ---------------eccCcceEEEEcCCCCEEEEecCcccEEEEEeccc-ceee--------hhcccceeeeeeecCCC
Confidence                           122223467899999999999 9999999999843 3322        12334457788898766


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       .+++.....|.|.|.....-+.+    ..++.             |.....+|.|+|+|+|+|+|+ |-.+.+||+.. 
T Consensus       160 -d~Fflt~GlG~v~ILsypsLkpv----~si~A-------------H~snCicI~f~p~GryfA~GsADAlvSLWD~~E-  220 (313)
T KOG1407|consen  160 -DLFFLTNGLGCVEILSYPSLKPV----QSIKA-------------HPSNCICIEFDPDGRYFATGSADALVSLWDVDE-  220 (313)
T ss_pred             -CEEEEecCCceEEEEeccccccc----ccccc-------------CCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence             77777777899999887764433    55666             478899999999999999985 69999999974 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      -.+++.+..+.-++               +.+.||.||++||+||+|..|-|=++++|.. +.+                
T Consensus       221 LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~-~~e----------------  268 (313)
T KOG1407|consen  221 LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGDR-VWE----------------  268 (313)
T ss_pred             hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCCe-EEE----------------
Confidence            77788888777655               6999999999999999999999999999843 111                


Q ss_pred             CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC
Q 011368          425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN  480 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~  480 (487)
                                                     ..++++-..|||||...+||.+++|
T Consensus       269 -------------------------------I~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  269 -------------------------------IPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             -------------------------------eeccCCceeEEecCCCceeeEEecC
Confidence                                           1233456789999999999988843

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=212.43  Aligned_cols=244  Identities=17%  Similarity=0.296  Sum_probs=195.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|+..|..++|+|.|++||+|+.|.++.||.-..+                         +++++.++.||+        
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHE--------  105 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHE--------  105 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccc--------
Confidence            48999999999999999999999999999986654                         778899999999        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..|.+++|  +++|.+||++++|+.|-||.+..+....                                      
T Consensus       106 ----nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfe--------------------------------------  141 (312)
T KOG0645|consen  106 ----NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFE--------------------------------------  141 (312)
T ss_pred             ----cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEE--------------------------------------
Confidence                88999999  6889999999999999999998553221                                      


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                           +... +.+|...|..+.|+|...+|+++ .|++|++|+-.. +......    .++.+|...|.+++|++.| ..
T Consensus       142 -----c~aV-L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~----~tl~g~~~TVW~~~F~~~G-~r  209 (312)
T KOG0645|consen  142 -----CIAV-LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECV----QTLDGHENTVWSLAFDNIG-SR  209 (312)
T ss_pred             -----EEee-eccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEE----EEecCccceEEEEEecCCC-ce
Confidence                 1122 48999999999999999999999 999999998773 3222221    3578999999999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC-Cc
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD-ST  346 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~-~~  346 (487)
                      |++++.|++++||-....-         .            ..|...+..+.|. +| .|+++ .|+.|++|.-... ..
T Consensus       210 l~s~sdD~tv~Iw~~~~~~---------~------------~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~  266 (312)
T KOG0645|consen  210 LVSCSDDGTVSIWRLYTDL---------S------------GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDE  266 (312)
T ss_pred             EEEecCCcceEeeeeccCc---------c------------hhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCC
Confidence            9999999999999866421         1            1235789999998 44 67765 6899999976531 11


Q ss_pred             eee-----eeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeC
Q 011368          347 PVA-----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       347 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~  400 (487)
                      +..     .-..|..               +|+++.|.|. ...|++|+.||.|++|.+.
T Consensus       267 p~~~l~~~~~~aHe~---------------dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  267 PSWNLLAKKEGAHEV---------------DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             chHHHHHhhhccccc---------------ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            211     1223333               3469999994 7789999999999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-30  Score=239.85  Aligned_cols=360  Identities=15%  Similarity=0.194  Sum_probs=264.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...|+|+.-+|+.-+||.|..||.|+||+......                           ..++.||.          
T Consensus        65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~---------------------------~~tfngHK----------  107 (888)
T KOG0306|consen   65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI---------------------------LITFNGHK----------  107 (888)
T ss_pred             cceEEEeeccCCcceEEEEecCceEEeeccCCCce---------------------------eeeecccc----------
Confidence            45899999999999999999999999999876543                           57899999          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .+|+.+.|  ...|.+|++|+.|+.|.+||+-...-.... ..+...+..+-| ..+..++.+.+.+.....    |+
T Consensus       108 --~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F-~~~~~~lvS~sKDs~iK~----Wd  177 (888)
T KOG0306|consen  108 --AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALF-LNGDSFLVSVSKDSMIKF----WD  177 (888)
T ss_pred             --cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhc-cCCCeEEEEeccCceEEE----Ee
Confidence              99999999  688999999999999999999765432221 111122222222 223444444444443332    33


Q ss_pred             ccceeeeeccc---CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-----------------------CceeEEe--
Q 011368          192 ENMATKVYPHA---HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------------DQCFNIV--  242 (487)
Q Consensus       192 ~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-----------------------~~~~~~~--  242 (487)
                      ....- . +..   |.+.|+.+++.+  +.++++ .|+.+++|++...                       ++.+++.  
T Consensus       178 L~tqh-C-f~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d  253 (888)
T KOG0306|consen  178 LETQH-C-FETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD  253 (888)
T ss_pred             cccce-e-eeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence            22221 1 233   357788888886  677777 9999999998210                       0011111  


Q ss_pred             --------------------------------------------------------------------------------
Q 011368          243 --------------------------------------------------------------------------------  242 (487)
Q Consensus       243 --------------------------------------------------------------------------------  242 (487)
                                                                                                      
T Consensus       254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~  333 (888)
T KOG0306|consen  254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG  333 (888)
T ss_pred             CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence                                                                                            


Q ss_pred             ------------------e--cCC---------CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc
Q 011368          243 ------------------D--MKP---------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  293 (487)
Q Consensus       243 ------------------~--~~~---------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  293 (487)
                                        .  .+.         .++.+|...|.+++++.+.  .++..+..+.+++|+..+.+.+    
T Consensus       334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kci----  407 (888)
T KOG0306|consen  334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKCI----  407 (888)
T ss_pred             cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEEEEccCccee----
Confidence                              0  001         2345788889999999885  4444455678999999988766    


Q ss_pred             eeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcce
Q 011368          294 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  372 (487)
Q Consensus       294 ~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (487)
                      +++..               +.+.+..|-|.+++++.|.+ |.+.+||+.+ ...+..+++|.+.+              
T Consensus       408 RTi~~---------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI--------------  457 (888)
T KOG0306|consen  408 RTITC---------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI--------------  457 (888)
T ss_pred             EEecc---------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce--------------
Confidence            77776               58899999999999999976 9999999987 88889999999865              


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEEeCCC----CceeEEEec-------cCCccccceEeeCCccccccccceeeeccc
Q 011368          373 KFECSVSGDGLHFATGSYSNLLRIFSHGVG----SAGGITVEA-------GKNENRKPILQAAPRARRSSLSNLTRGLYR  441 (487)
Q Consensus       373 ~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~  441 (487)
                       ++++.+||++.+++||.|.+|++||..--    +.....+.-       -.+.+-++.++|  |+++     |+.+--|
T Consensus       458 -Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~-----LaVsLLd  529 (888)
T KOG0306|consen  458 -WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKL-----LAVSLLD  529 (888)
T ss_pred             -eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcE-----EEEEecc
Confidence             79999999999999999999999998631    111111222       134566777777  8998     9999999


Q ss_pred             ce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEe
Q 011368          442 QA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY  486 (487)
Q Consensus       442 ~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~  486 (487)
                      .. +++  ++-.....+++|.=||.+|..|||++.|++||. .++.||-
T Consensus       530 nTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG  578 (888)
T KOG0306|consen  530 NTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG  578 (888)
T ss_pred             CeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence            88 888  444556678899999999999999999999994 4699994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-31  Score=246.95  Aligned_cols=280  Identities=16%  Similarity=0.233  Sum_probs=227.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      .+..|..++|+|...++.++-.+|.|++||..-+.+                           +..|..|.         
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------------i~rFdeHd---------   51 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------------IDRFDEHD---------   51 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------------HhhhhccC---------
Confidence            366899999999999999999999999999876654                           46688888         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ++|..|+|+  |.+.+|++|+.|..|++|+..+.++...                                      
T Consensus        52 ---GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrclft--------------------------------------   88 (1202)
T KOG0292|consen   52 ---GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCLFT--------------------------------------   88 (1202)
T ss_pred             ---Cccceeeec--CCCCeEEecCCccEEEEEecccceehhh--------------------------------------
Confidence               999999996  5678999999999999999998876544                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                               +.+|-+.|+.+.|++.-..|+++ +|.+|+||+.. .++++.+       +.+|+..|+|..|+|.. ..+
T Consensus        89 ---------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHYVMcAqFhptE-DlI  150 (1202)
T KOG0292|consen   89 ---------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHYVMCAQFHPTE-DLI  150 (1202)
T ss_pred             ---------hccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceEEEeeccCCcc-ceE
Confidence                     48999999999999999999999 99999999999 5666654       58999999999999988 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccce----eecccc--------cccCccccccccccceeEEEEcCCCCEEEEEeC-CeE
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSAR----ILRDAA--------ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  336 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~h~--------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i  336 (487)
                      +++|-|.+||+||+..-+......-    .+.++.        .....+..+.||...|+-++|+|.-.++++|+| ..|
T Consensus       151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV  230 (1202)
T KOG0292|consen  151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV  230 (1202)
T ss_pred             EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence            9999999999999975331100000    011100        011223456899999999999999999999965 999


Q ss_pred             EEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368          337 KLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       337 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      ++|.+.. ..-.+.+..+|.+.+               .++-|+|...+|++.|.|++|+|||+... ..+++++...+.
T Consensus       231 KlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendR  294 (1202)
T KOG0292|consen  231 KLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDR  294 (1202)
T ss_pred             eEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCe
Confidence            9999863 123466778888866               59999999999999999999999999865 446777666666


Q ss_pred             cccceEee
Q 011368          416 NRKPILQA  423 (487)
Q Consensus       416 v~~~~~~~  423 (487)
                      -+.++..|
T Consensus       295 FW~laahP  302 (1202)
T KOG0292|consen  295 FWILAAHP  302 (1202)
T ss_pred             EEEEEecC
Confidence            66677666

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-29  Score=210.90  Aligned_cols=267  Identities=18%  Similarity=0.274  Sum_probs=203.3

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...|+++.|+++|.+|++++.|.+++|||..+++.                           +.++..++          
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------------~~ti~skk----------   56 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------------VKTINSKK----------   56 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------------eeEeeccc----------
Confidence            66899999999999999999999999999988865                           46666666          


Q ss_pred             cccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                        -.|..++|.  .....++.++  .|.+||..++.+.+.++.                                     
T Consensus        57 --yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl~dNkylRY-------------------------------------   95 (311)
T KOG1446|consen   57 --YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSLHDNKYLRY-------------------------------------   95 (311)
T ss_pred             --ccccEEEEe--cCCceEEEccCCCCCceEEEEeecCceEEE-------------------------------------
Confidence              678999995  3444555555  489999999999886654                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +.||...|+.++.+|-+..++++ .|++|++||++. .++..++.         ...-..++|+|+| .+
T Consensus        96 ----------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~---------~~~~pi~AfDp~G-Li  154 (311)
T KOG1446|consen   96 ----------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLN---------LSGRPIAAFDPEG-LI  154 (311)
T ss_pred             ----------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEEe---------cCCCcceeECCCC-cE
Confidence                      59999999999999988999998 999999999994 44444431         1223457899999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~  347 (487)
                      +|++...+.|+|||+|.-..  .....|..          ..+.....+.+.|||||++|+.+.. +.+++.|.-. +..
T Consensus       155 fA~~~~~~~IkLyD~Rs~dk--gPF~tf~i----------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~  221 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDK--GPFTTFSI----------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTV  221 (311)
T ss_pred             EEEecCCCeEEEEEecccCC--CCceeEcc----------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcE
Confidence            99998888999999997421  11122222          0122467899999999999998765 8999999876 788


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-cCCccccceEee
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQA  423 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~  423 (487)
                      ...+..+......        .    .+.+|+||++++++|+.||+|.+|+++++.. +..+.+ +..++..+.|.|
T Consensus       222 ~~tfs~~~~~~~~--------~----~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  222 KSTFSGYPNAGNL--------P----LSATFTPDSKFVLSGSDDGTIHVWNLETGKK-VAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             eeeEeeccCCCCc--------c----eeEEECCCCcEEEEecCCCcEEEEEcCCCcE-eeEecCCCCCCccccccCC
Confidence            8888776653210        1    3899999999999999999999999999854 333333 344444444433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.9e-31  Score=216.98  Aligned_cols=253  Identities=18%  Similarity=0.279  Sum_probs=207.4

Q ss_pred             ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      ..+...+.+|+            +.|+.+.|  .|+|.+|++|+.|..|.+|++.......-                  
T Consensus        37 ~ap~m~l~gh~------------geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------------------   84 (338)
T KOG0265|consen   37 QAPIMLLPGHK------------GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCENFW------------------   84 (338)
T ss_pred             cchhhhcCCCc------------ceEEEEEE--CCCCCeEeecCCcceEEEEecccccccee------------------
Confidence            34567788998            88999999  57999999999999999999865431111                  


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                                  .+.+|.+.|..+.|.+|++.|+++ .|.+++.||.++++...        ++
T Consensus        85 ----------------------------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r--------k~  128 (338)
T KOG0265|consen   85 ----------------------------VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR--------KH  128 (338)
T ss_pred             ----------------------------eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee--------hh
Confidence                                        137999999999999999999999 99999999999665433        46


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                      .+|..-|..+.-+.-|+.++.+++.||++++||+|+...+    ++++.              ..+++++.|..++..+.
T Consensus       129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~~--------------kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFEN--------------KYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             ccccceeeecCccccCCeEEEecCCCceEEEEeecccchh----hcccc--------------ceeEEEEEeccccccee
Confidence            8899999999866677788889999999999999987765    66655              56899999999999999


Q ss_pred             EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc---e
Q 011368          330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---G  405 (487)
Q Consensus       330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---~  405 (487)
                      +|. |+.|++||++. ......+.+|..++               +.+..+|+|.++.+-+.|.++++||++.-..   .
T Consensus       191 sggIdn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             eccccCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            886 79999999997 88999999999876               6999999999999999999999999985311   1


Q ss_pred             eEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEE
Q 011368          406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF  484 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i  484 (487)
                      +..+.+                                          ....++.....++|+|++..+..|+.| .+|+
T Consensus       255 v~if~g------------------------------------------~~hnfeknlL~cswsp~~~~i~ags~dr~vyv  292 (338)
T KOG0265|consen  255 VKIFQG------------------------------------------HIHNFEKNLLKCSWSPNGTKITAGSADRFVYV  292 (338)
T ss_pred             EEEeec------------------------------------------chhhhhhhcceeeccCCCCccccccccceEEE
Confidence            111111                                          223455567788999999999888844 5999


Q ss_pred             EeC
Q 011368          485 HYA  487 (487)
Q Consensus       485 ~~~  487 (487)
                      |.+
T Consensus       293 wd~  295 (338)
T KOG0265|consen  293 WDT  295 (338)
T ss_pred             eec
Confidence            974

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-30  Score=228.09  Aligned_cols=301  Identities=17%  Similarity=0.275  Sum_probs=226.7

Q ss_pred             CcccccccccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCE-EEEEecCCcEEEEEeeCCcCCCCcccchhhhhc
Q 011368            1 MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEK   79 (487)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   79 (487)
                      |.+.+..+++...|+-..  .    .......+.|.+++|||...+ +|+.+ .-.+.||+..+....            
T Consensus         1 ~~~~~~~t~e~~~w~~~~--~----~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~------------   61 (487)
T KOG0310|consen    1 MALPQSETPEIRYWRQET--F----PPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR------------   61 (487)
T ss_pred             CCCCcCCCccchhhhhhc--c----cccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh------------
Confidence            445566666777774221  1    112223568999999996643 33332 347999997765431            


Q ss_pred             cccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCC
Q 011368           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  159 (487)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  159 (487)
                                     +++.-..            ..|.++.|  -.||++|++|...|.|+++|+.+......       
T Consensus        62 ---------------k~~srFk------------~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~-------  105 (487)
T KOG0310|consen   62 ---------------KTFSRFK------------DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ-------  105 (487)
T ss_pred             ---------------hhHHhhc------------cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH-------
Confidence                           2222223            77999999  48999999999999999999665433222       


Q ss_pred             ceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCc
Q 011368          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ  237 (487)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~  237 (487)
                                                              +.+|+.++..+.|+|.+ ..+++| +|+.+++||+.+.. 
T Consensus       106 ----------------------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-  144 (487)
T KOG0310|consen  106 ----------------------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-  144 (487)
T ss_pred             ----------------------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-
Confidence                                                    48999999999999964 556667 89999999999443 


Q ss_pred             eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccccee
Q 011368          238 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  317 (487)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  317 (487)
                      . .      ..+.+|.+.|.|.+|+|..+.++++|+.||.|++||++.....   +..++              |..+|.
T Consensus       145 v-~------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---v~eln--------------hg~pVe  200 (487)
T KOG0310|consen  145 V-Q------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---VVELN--------------HGCPVE  200 (487)
T ss_pred             E-E------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce---eEEec--------------CCCcee
Confidence            2 2      2468999999999999987679999999999999999986311   12332              468999


Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEE
Q 011368          318 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  397 (487)
Q Consensus       318 ~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iw  397 (487)
                      .+.+-|.|..+++++.+.|++||+.++++.+..+..|...+               +++.+..++..|++|+-|+.+++|
T Consensus       201 ~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVf  265 (487)
T KOG0310|consen  201 SVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVF  265 (487)
T ss_pred             eEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEE
Confidence            99999999999999889999999987677777777677755               799999999999999999999999


Q ss_pred             EeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEe
Q 011368          398 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA  477 (487)
Q Consensus       398 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~  477 (487)
                      |+.+-+               +..                                 ...+.++|.+++.+||+..++.|
T Consensus       266 d~t~~K---------------vv~---------------------------------s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  266 DTTNYK---------------VVH---------------------------------SWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EccceE---------------EEE---------------------------------eeecccceeeEEecCCCceEEEe
Confidence            976541               111                                 12445588899999999999988


Q ss_pred             cCCeEEE
Q 011368          478 NGNSLFF  484 (487)
Q Consensus       478 s~~~~~i  484 (487)
                      -.|++..
T Consensus       298 msnGlv~  304 (487)
T KOG0310|consen  298 MSNGLVS  304 (487)
T ss_pred             cccceee
Confidence            8887654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=4.2e-31  Score=223.15  Aligned_cols=290  Identities=14%  Similarity=0.220  Sum_probs=245.2

Q ss_pred             cccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceee
Q 011368           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (487)
Q Consensus        84 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (487)
                      +..++.+++..+.+++|.            +.|.+|++  .|.+.+|++|+.|++++|||+.+++++..           
T Consensus       134 rPeWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt-----------  188 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT-----------  188 (460)
T ss_pred             CccccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence            456788899999999999            99999999  56789999999999999999999987765           


Q ss_pred             eeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEe
Q 011368          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  242 (487)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~  242 (487)
                                                          +.+|...|..+++|+-..+++++ .|+.|+.||++.++ .+   
T Consensus       189 ------------------------------------ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-vI---  228 (460)
T KOG0285|consen  189 ------------------------------------LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-VI---  228 (460)
T ss_pred             ------------------------------------ecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-hH---
Confidence                                                48999999999999999999999 99999999999544 33   


Q ss_pred             ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                          +.+.+|-+.|+|++.+|.- ..|++|+.|..+|+||+++...+    .++.+             |...|.++.+.
T Consensus       229 ----R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~~l~G-------------H~~~V~~V~~~  286 (460)
T KOG0285|consen  229 ----RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----HVLSG-------------HTNPVASVMCQ  286 (460)
T ss_pred             ----HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----EEecC-------------CCCcceeEEee
Confidence                3567999999999999998 99999999999999999997644    56666             58999999999


Q ss_pred             CCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          323 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       323 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      |-...+++|+ |++|++||++. ++....+..|...+               .+++.+|....+|+++.| .|+-|++..
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fASas~d-nik~w~~p~  349 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFASASPD-NIKQWKLPE  349 (460)
T ss_pred             cCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhccCCc-cceeccCCc
Confidence            8877888886 79999999997 88899998888754               699999999999999988 699999998


Q ss_pred             CCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCccc--------cccccCCCeEEEEEcCC
Q 011368          402 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE--------LSYNLSSKLLHLAWHPT  470 (487)
Q Consensus       402 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~--------~~~~~~~~v~~~~~spd  470 (487)
                      |.. ...+.+|...++.++...  |+.      +++|+.++. ..|  ..+....        ....-+..|...+|...
T Consensus       350 g~f-~~nlsgh~~iintl~~ns--D~v------~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt  420 (460)
T KOG0285|consen  350 GEF-LQNLSGHNAIINTLSVNS--DGV------LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT  420 (460)
T ss_pred             cch-hhccccccceeeeeeecc--Cce------EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence            855 555999999999998876  444      799999998 777  3331111        12244568999999999


Q ss_pred             CCEEEEecCC-eEEEEe
Q 011368          471 TNLIACANGN-SLFFHY  486 (487)
Q Consensus       471 ~~~la~~s~~-~~~i~~  486 (487)
                      |..|++|..| .+.+|.
T Consensus       421 g~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  421 GSRLITGEADKTIKMYK  437 (460)
T ss_pred             CceEEeccCCcceEEEe
Confidence            9999988854 588874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.7e-31  Score=226.33  Aligned_cols=286  Identities=14%  Similarity=0.140  Sum_probs=224.1

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      ...+..|.            +.|.-+.|  +++|++||+++.|.+..+|.+.......+.                    
T Consensus       217 ~qil~~ht------------dEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~--------------------  262 (519)
T KOG0293|consen  217 WQILQDHT------------DEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHFKLK--------------------  262 (519)
T ss_pred             hhhHhhCC------------CcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcceeee--------------------
Confidence            45677777            88999999  689999999999999999998765432221                    


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                             . .+.+|..+|..+.||||.+++++| .|..+.+||+.++. +...+      -.++
T Consensus       263 -----------------------~-tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd-~~~~y------~~~~  311 (519)
T KOG0293|consen  263 -----------------------K-TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD-LRHLY------PSGL  311 (519)
T ss_pred             -----------------------e-eeecccCceEEEEECCCCCeEEecCchHheeeccCCcch-hhhhc------ccCc
Confidence                                   1 147999999999999999999999 88889999999654 33321      1235


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  331 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-  331 (487)
                      ...+.+++|.|+| ..+++|+.|+.+..||+.....     ..+++-            ....|.+++.++||+++++. 
T Consensus       312 ~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-----~~W~gv------------r~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  312 GFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-----GNWEGV------------RDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             CCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-----hccccc------------ccceeEEEEEcCCCcEEEEEe
Confidence            6789999999999 9999999999999999987542     455551            02469999999999998864 


Q ss_pred             eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          332 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       332 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                      .|..|++++..+ ...+..+..+..                ++++++|.|++++++.-.+..+++||++.. ..+..+.+
T Consensus       374 ~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~G  435 (519)
T KOG0293|consen  374 VDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFG  435 (519)
T ss_pred             cccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhc
Confidence            689999999875 443434443332                269999999999999999999999999955 44666667


Q ss_pred             cCCc--cccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCC-EEEEecCCe-EEE
Q 011368          412 GKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-LIACANGNS-LFF  484 (487)
Q Consensus       412 ~~~~--v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~s~~~-~~i  484 (487)
                      |+..  +..-+|.. .+..+     +++|+.|+. .+|  ..+..+..+.+|.+.|+.|+|+|..+ .+|+|++|+ +.|
T Consensus       436 hkq~~fiIrSCFgg-~~~~f-----iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGG-GNDKF-----IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             ccccceEEEeccCC-CCcce-----EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence            7543  22333433 24455     899999999 999  66778888999999999999999875 578999776 889


Q ss_pred             Ee
Q 011368          485 HY  486 (487)
Q Consensus       485 ~~  486 (487)
                      |.
T Consensus       510 Wg  511 (519)
T KOG0293|consen  510 WG  511 (519)
T ss_pred             ec
Confidence            95

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.3e-30  Score=235.44  Aligned_cols=275  Identities=14%  Similarity=0.177  Sum_probs=231.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .+|.+|.|+  |...+++++-.+|.|.|||.++..+.+..                                        
T Consensus        14 dRVKsVd~H--PtePw~la~LynG~V~IWnyetqtmVksf----------------------------------------   51 (794)
T KOG0276|consen   14 DRVKSVDFH--PTEPWILAALYNGDVQIWNYETQTMVKSF----------------------------------------   51 (794)
T ss_pred             CceeeeecC--CCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence            889999997  55679999999999999999988766542                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                             .-..-+|++..|-+--+.+++| +|..|++|+.++..+..        .+++|.+.|++++.+|.. .+++++
T Consensus        52 -------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--------~FeAH~DyIR~iavHPt~-P~vLts  115 (794)
T KOG0276|consen   52 -------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--------TFEAHSDYIRSIAVHPTL-PYVLTS  115 (794)
T ss_pred             -------eecccchhhheeeeccceEEEecCCceEEEEecccceeeE--------EeeccccceeeeeecCCC-CeEEec
Confidence                   4456778899998888999999 99999999999665433        478999999999999998 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      |+|-.|++||.+.+=.+   .++|++             |+..|.+++|+|. .+.+++++ |++|++|.+.. ..+..+
T Consensus       116 SDDm~iKlW~we~~wa~---~qtfeG-------------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfT  178 (794)
T KOG0276|consen  116 SDDMTIKLWDWENEWAC---EQTFEG-------------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFT  178 (794)
T ss_pred             CCccEEEEeeccCceee---eeEEcC-------------cceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCcee
Confidence            99999999999876433   256666             5889999999985 55777776 79999999987 888999


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcC--CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  428 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  428 (487)
                      +.+|...+               .++++-+  |..+|++|++|.+|+|||.++. .+++++++|...|..+.|.|.    
T Consensus       179 l~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~----  238 (794)
T KOG0276|consen  179 LEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPE----  238 (794)
T ss_pred             eeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCC----
Confidence            99999865               6899887  4579999999999999999987 779999999999999999985    


Q ss_pred             cccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          429 RSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       429 ~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                         ++.+++|+.||. ++|  .+..+...+.---.+|.+++-.+.+..+|+|.+++..+.+
T Consensus       239 ---lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  239 ---LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK  296 (794)
T ss_pred             ---CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence               445999999999 999  3333444444445689999999999999999998866554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=5.6e-30  Score=217.08  Aligned_cols=292  Identities=15%  Similarity=0.156  Sum_probs=224.8

Q ss_pred             CCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (487)
Q Consensus        24 ~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (487)
                      ...+..+|.+.|+|+.||.+|.+||||+.+|.|+||+..++...                           ..+...-  
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~---------------------------~~~~~e~--  148 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ---------------------------WKLDQEV--  148 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE---------------------------EEeeccc--
Confidence            56677889999999999999999999999999999999988642                           2232222  


Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                                +.|.-+.|+  |.+..|++|+.||.+-+|.+.++...++                               
T Consensus       149 ----------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv-------------------------------  185 (399)
T KOG0296|consen  149 ----------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKV-------------------------------  185 (399)
T ss_pred             ----------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeE-------------------------------
Confidence                      568889997  4688999999999999999998643333                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                      +.+|..++++=.|.|+|+.++++ .||+|++|+..++.....+-       ..-.....++.++
T Consensus       186 ----------------~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~-------~~e~~~~~~~~~~  242 (399)
T KOG0296|consen  186 ----------------MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT-------QAEGLELPCISLN  242 (399)
T ss_pred             ----------------ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec-------ccccCcCCccccc
Confidence                            48999999999999999999999 99999999999665444331       1113456788899


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEE---EcCCCCEEEEEe-CCeEEE
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRD-YMNLKL  338 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~---~s~~~~~l~s~~-d~~i~i  338 (487)
                      ..+ ..++.|+.++.+.+-+..+++.+    ..+.+     ..+.....++..+.++.   ++..-.+.|+|+ ||+|.|
T Consensus       243 ~~~-~~~~~g~~e~~~~~~~~~sgKVv----~~~n~-----~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i  312 (399)
T KOG0296|consen  243 LAG-STLTKGNSEGVACGVNNGSGKVV----NCNNG-----TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI  312 (399)
T ss_pred             ccc-ceeEeccCCccEEEEccccceEE----EecCC-----CCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence            888 89999999999999988888754    23221     01111122334444444   454555667775 799999


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      ||+.. .++.... .|+..+               +.+.|-+ ..+|++++.||.|+.||.++| ..+.++.+|...|..
T Consensus       313 yD~a~-~~~R~~c-~he~~V---------------~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  313 YDLAA-STLRHIC-EHEDGV---------------TKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILD  373 (399)
T ss_pred             Eeccc-chhheec-cCCCce---------------EEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchheeE
Confidence            99975 4444444 454433               6999998 789999999999999999999 669999999999999


Q ss_pred             ceEeeCCccccccccceeeecccce-ecC
Q 011368          419 PILQAAPRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       419 ~~~~~~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      .+.+|  +.++     +++++.|+. +++
T Consensus       374 f~ls~--~~~~-----vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  374 FALSP--QKRL-----VVTVSDDNTALVF  395 (399)
T ss_pred             EEEcC--CCcE-----EEEecCCCeEEEE
Confidence            99998  5666     888888887 655

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4e-29  Score=237.23  Aligned_cols=301  Identities=13%  Similarity=0.133  Sum_probs=210.5

Q ss_pred             hhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE
Q 011368           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (487)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (487)
                      +|.+.||..  .+...|-..|+....++++..+++++.+.....|+..++...       -.+...+.     .+  ...
T Consensus         5 k~rh~~g~~--~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-------~~~~~~G~-----~~--~~~   68 (493)
T PTZ00421          5 RFRHTQGVP--ARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-------LKHTDYGK-----LA--SNP   68 (493)
T ss_pred             ccccccccc--CCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEE-------eecccccc-----CC--CCC
Confidence            566777733  344445567888888888777788888888888886554221       00000000     00  011


Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ..+.+|.            +.|.+++|+| .++.+|++|+.|++|++||+.++......                     
T Consensus        69 ~~l~GH~------------~~V~~v~fsP-~d~~~LaSgS~DgtIkIWdi~~~~~~~~~---------------------  114 (493)
T PTZ00421         69 PILLGQE------------GPIIDVAFNP-FDPQKLFTASEDGTIMGWGIPEEGLTQNI---------------------  114 (493)
T ss_pred             ceEeCCC------------CCEEEEEEcC-CCCCEEEEEeCCCEEEEEecCCCcccccc---------------------
Confidence            3467888            9999999954 26789999999999999999765321100                     


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                        ..+... +.+|...|.+++|+|++ ++|++| .|++|++||++++. ...       .+.+|
T Consensus       115 ------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~-------~l~~h  167 (493)
T PTZ00421        115 ------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVE-------VIKCH  167 (493)
T ss_pred             ------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEE-------EEcCC
Confidence                              011122 37899999999999975 689998 99999999999543 332       34678


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc-ceeEEEEcCCCCEEEEE
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR  331 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~  331 (487)
                      ...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..|             .+ .+..+.|.+++..++++
T Consensus       168 ~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~H-------------~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        168 SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEAH-------------ASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEecC-------------CCCcceEEEEcCCCCeEEEE
Confidence            8999999999999 99999999999999999987654    455553             32 34567899988877763


Q ss_pred             e-----CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCCce
Q 011368          332 D-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG  405 (487)
Q Consensus       332 ~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~~~  405 (487)
                      +     |+.|++||++....++.....+....              +....|++++++|++|+ .|+.|++||+.++...
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            2     58999999986455554443332211              13567899999999887 5999999999987543


Q ss_pred             eEEEeccCCccccceEeeC
Q 011368          406 GITVEAGKNENRKPILQAA  424 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~  424 (487)
                      ...-..+..+...+++.|.
T Consensus       296 ~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        296 FCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEeeccCCCCCcceEeccc
Confidence            3322335566777777774

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.2e-30  Score=208.07  Aligned_cols=239  Identities=15%  Similarity=0.195  Sum_probs=195.4

Q ss_pred             cCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          202 AHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       202 ~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      .-.+.+.+++|+++ .+.++++ .||+++|||+.....++       +.+++|...|.++.|++.....+++++.|++|+
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK  130 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK  130 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence            34677899999985 4556666 99999999977555543       457899999999999987668889999999999


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEE-eCCeEEEEeCCCCCceeeeeeccccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      +|+...+..+    ++|.+             |..-|...+|+|. ..+++++ +|+.+++||++..++.+. +..|...
T Consensus       131 LW~~~r~~Sv----~Tf~g-------------h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E  192 (311)
T KOG0277|consen  131 LWDPNRPNSV----QTFNG-------------HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE  192 (311)
T ss_pred             eecCCCCcce----EeecC-------------CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce
Confidence            9999876655    66666             4889999999996 4566666 479999999998777666 8888754


Q ss_pred             ccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccccccee
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT  436 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  436 (487)
                      +               .++.|+. +...|+||+.|+.|++||+++-+..+.++.+|.-.|+.+.++|.. ..+     |+
T Consensus       193 i---------------l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-~~l-----La  251 (311)
T KOG0277|consen  193 I---------------LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-ASL-----LA  251 (311)
T ss_pred             e---------------EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch-hhH-----hh
Confidence            3               5899997 677899999999999999999888899999999999999999963 333     89


Q ss_pred             eecccce-ecCCCC---CccccccccCCCeEEEEEcC-CCCEEEEec-CCeEEEEe
Q 011368          437 RGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHP-TTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       437 ~g~~~~~-~~w~~~---~~~~~~~~~~~~v~~~~~sp-d~~~la~~s-~~~~~i~~  486 (487)
                      +++.|.. ++|+..   ..+.....|+.-|..+.||+ +..++|..+ +..+|||+
T Consensus       252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            9999999 999443   23344457888899999998 456788888 55699997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.2e-30  Score=243.60  Aligned_cols=248  Identities=20%  Similarity=0.340  Sum_probs=206.8

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|...|++++|+|+++++++|+.|++|+|||+...                          .+.++++++|.      
T Consensus       199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------------~~~~~~l~gH~------  246 (456)
T KOG0266|consen  199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------------GRNLKTLKGHS------  246 (456)
T ss_pred             ccccccceeeeEECCCCcEEEEecCCceEEEeeccCC--------------------------CeEEEEecCCC------
Confidence            3579999999999999999999999999999998322                          23478999999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|++++|  +++++++++|+.|++|++||+.+++....                                   
T Consensus       247 ------~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~-----------------------------------  283 (456)
T KOG0266|consen  247 ------TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRK-----------------------------------  283 (456)
T ss_pred             ------CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEe-----------------------------------
Confidence                  89999999  57789999999999999999999876654                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCC--cEEEEEEec
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTE--VITSAEFHP  263 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~--~v~~v~~~p  263 (487)
                                  +.+|.+.|++++|+++++.|+++ .|+.|++||+.++.. +.+.       +.++..  .++++.|+|
T Consensus       284 ------------l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~fsp  344 (456)
T KOG0266|consen  284 ------------LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL-------LSGAENSAPVTSVQFSP  344 (456)
T ss_pred             ------------eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec-------ccCCCCCCceeEEEECC
Confidence                        48999999999999999999999 999999999995542 2222       233333  599999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~  342 (487)
                      ++ .++++++.|+.+++||++.+...    ..+.+|...          ...+.+...++.++++++|+ |+.|++||+.
T Consensus       345 ~~-~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  345 NG-KYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNL----------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             CC-cEEEEecCCCeEEEEEccCCcce----eeecccCCc----------ceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            99 99999999999999999988765    666665221          01344555688999999986 5999999999


Q ss_pred             CCCceeeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeC
Q 011368          343 MDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG  400 (487)
Q Consensus       343 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~  400 (487)
                      + +..+..+.+| ...+               ..+.++|...++++++  .|+.+++|...
T Consensus       410 s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  410 S-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             c-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCceEEEecCC
Confidence            7 8888888888 4432               4899999999999998  78999999764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.8e-30  Score=214.24  Aligned_cols=311  Identities=15%  Similarity=0.181  Sum_probs=235.6

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhh-hccccccccCCCcceeEeeecCCCcccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSEL-EKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ....|..++.+.+|||||.++|+|+.|-+|+|.|++..-..    ...+++ .+.      ....-..+++|-.|.    
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak----s~~~em~~~~------~qa~hPvIRTlYDH~----  172 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK----SKPKEMISGD------TQARHPVIRTLYDHV----  172 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh----cchhhhccCC------cccCCceEeehhhcc----
Confidence            34569999999999999999999999999999998732110    000000 000      011123678889998    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              +.|+++.|+  |....|++++.|++|+++|+..-..++-.                                
T Consensus       173 --------devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~--------------------------------  210 (430)
T KOG0640|consen  173 --------DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAF--------------------------------  210 (430)
T ss_pred             --------Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHH--------------------------------
Confidence                    889999996  56789999999999999999764332210                                


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                 +  ......+|.+++|+|.|.+|+.| +-.++++||+++ -+++..-    ..-.+|.+.|+++.+++.
T Consensus       211 -----------K--~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~Qcfvsa----nPd~qht~ai~~V~Ys~t  272 (430)
T KOG0640|consen  211 -----------K--VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSA----NPDDQHTGAITQVRYSST  272 (430)
T ss_pred             -----------H--HhhccceeeeEeecCCCceEEEecCCCceeEEeccc-eeEeeec----CcccccccceeEEEecCC
Confidence                       1  13456789999999999999999 889999999994 4555331    234679999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecc-cccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIR  342 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~  342 (487)
                      + ++.++++.||.|+|||--+++++    +++.. |.            ...|.+..|..+|+|+++. .|..+++|.+.
T Consensus       273 ~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~AH~------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  273 G-SLYVTASKDGAIKLWDGVSNRCV----RTIGNAHG------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             c-cEEEEeccCCcEEeeccccHHHH----HHHHhhcC------------CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            9 99999999999999999888765    44432 21            3579999999999999975 57999999999


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKNENRKPIL  421 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  421 (487)
                      + ++++..+.+....-.        ...  .+...|+....|++.-.+ .+.+.-||.++.......--+|.++++.+.-
T Consensus       336 t-~R~l~~YtGAg~tgr--------q~~--rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H  404 (430)
T KOG0640|consen  336 T-GRMLKEYTGAGTTGR--------QKH--RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH  404 (430)
T ss_pred             C-CceEEEEecCCcccc--------hhh--hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence            8 899988876532110        000  035667777777765543 4789999999987777777799999999999


Q ss_pred             eeCCccccccccceeeecccce-ecC
Q 011368          422 QAAPRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       422 ~~~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      +|..+       ++++++.|.. +.|
T Consensus       405 SP~~p-------~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  405 SPVEP-------AFMTCSDDFRARFW  423 (430)
T ss_pred             CCCCC-------ceeeecccceeeee
Confidence            98532       3899999998 999

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-30  Score=209.35  Aligned_cols=243  Identities=19%  Similarity=0.291  Sum_probs=200.4

Q ss_pred             cCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      .+.+..++|+++. +.+++++.||+++|||...                          ...++..++.|+         
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------~s~Pi~~~kEH~---------  104 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------PSKPIHKFKEHK---------  104 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------CCcchhHHHhhh---------
Confidence            6789999999965 6788888999999999432                          223578889998         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ..|.++.|.+ ..+..+++++.|++|++|+....+....                                      
T Consensus       105 ---~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T--------------------------------------  142 (311)
T KOG0277|consen  105 ---REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT--------------------------------------  142 (311)
T ss_pred             ---hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe--------------------------------------
Confidence               8899999975 5677888899999999999987664433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                               +.+|...|+...|+| ..++++++ .|+.+++||++..++.+.        ++.|...|.|+.|+.-...+
T Consensus       143 ---------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~Eil~cdw~ky~~~v  205 (311)
T KOG0277|consen  143 ---------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNSEILCCDWSKYNHNV  205 (311)
T ss_pred             ---------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccceeEeecccccCCcE
Confidence                     389999999999999 57788888 999999999998776554        46888999999999876689


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeCCCCCc
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +++|+.|+.|+.||+++-+..   +..+.+             |.-.|+.+.|||... .|++++ |-+++|||...+..
T Consensus       206 l~Tg~vd~~vr~wDir~~r~p---l~eL~g-------------h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  206 LATGGVDNLVRGWDIRNLRTP---LFELNG-------------HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             EEecCCCceEEEEehhhcccc---ceeecC-------------CceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence            999999999999999985422   234444             588999999999754 667777 59999999987677


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEe
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~  399 (487)
                      .+.+...|...+               ..+.||+ ++.++|+.+.|..++||+.
T Consensus       270 ~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  270 AIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence            778888887765               5788887 6789999999999999984

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=7.4e-30  Score=207.48  Aligned_cols=291  Identities=13%  Similarity=0.158  Sum_probs=227.9

Q ss_pred             CccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ....+|..+++.+.++.+|.+|.+++.|.++.||-..+++.                           +.++.||.    
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------lGty~GHt----   52 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------LGTYDGHT----   52 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce---------------------------eeeecCCC----
Confidence            44567999999999999999999999999999999877765                           58999999    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ++|.++..  +.+.+++++|+.|.++++||+.+|+.+...+  ....+..+.|...+...+++.........
T Consensus        53 --------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~  120 (327)
T KOG0643|consen   53 --------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTC  120 (327)
T ss_pred             --------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence                    99999998  5788899999999999999999998776544  33455566666555555555443322222


Q ss_pred             eeeeee---------ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc
Q 011368          186 YHLEWT---------ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  255 (487)
Q Consensus       186 ~~~~~~---------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  255 (487)
                      ....++         ...+.... ..+.+.++.+-|.|-+++|++| .||.|.+||++++.+.+.       .-+.|...
T Consensus       121 ~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~-------s~~~h~~~  192 (327)
T KOG0643|consen  121 FVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD-------SDEEHSSK  192 (327)
T ss_pred             EEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee-------chhhhccc
Confidence            222222         23334333 6677999999999999999999 999999999996655554       34678889


Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C
Q 011368          256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y  333 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d  333 (487)
                      |+.+.++|+. .++++++.|.+-++||.++-+.+    +++..              ..+|++.+++|...+++.|+  +
T Consensus       193 Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP~~d~VilgGGqe  253 (327)
T KOG0643|consen  193 INDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISPLLDHVILGGGQE  253 (327)
T ss_pred             cccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceecccccceEEecCCce
Confidence            9999999999 99999999999999999997765    77777              67999999999887777653  1


Q ss_pred             -CeEE------------EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          334 -MNLK------------LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       334 -~~i~------------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                       ..|.            +|++-. .+.+..+++|-+++               ++++|+|+|+..++|+.||.|++....
T Consensus       254 A~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  254 AMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             eeeeeeecccccchhhhHHHHHH-HHHhccccccccCc---------------ceeEECCCCcccccCCCCceEEEEEec
Confidence             2222            233322 34566778888866               699999999999999999999998776


Q ss_pred             CC
Q 011368          401 VG  402 (487)
Q Consensus       401 ~~  402 (487)
                      ..
T Consensus       318 ~~  319 (327)
T KOG0643|consen  318 SN  319 (327)
T ss_pred             cc
Confidence            43

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=4.8e-29  Score=202.80  Aligned_cols=285  Identities=14%  Similarity=0.160  Sum_probs=220.5

Q ss_pred             eecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccc
Q 011368           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (487)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      .++||+            .+++.|.|  +.+|.+|.+++.|.+..+|--.+|+.+..                       
T Consensus         5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt-----------------------   47 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT-----------------------   47 (327)
T ss_pred             ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence            478888            99999999  68999999999999999999877775554                       


Q ss_pred             ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368          176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  254 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  254 (487)
                                              ..+|.+.|+|+..+.+.+.+++| .|.++++||++++++.. .+        ....
T Consensus        48 ------------------------y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la-~~--------k~~~   94 (327)
T KOG0643|consen   48 ------------------------YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA-TW--------KTNS   94 (327)
T ss_pred             ------------------------ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE-Ee--------ecCC
Confidence                                    28999999999999999999999 99999999999665443 32        2456


Q ss_pred             cEEEEEEecCCCCEEEEEeC-----CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368          255 VITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                      +|..+.|+++| ++++.+.+     .+.|.++|++....-.          ....+...+.-+...++.+.|.|-+++|+
T Consensus        95 ~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   95 PVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI----------DSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             eeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh----------cccCceEEecCCccceeeeeecccCCEEE
Confidence            79999999999 88877765     4689999998543100          00000111222357899999999999999


Q ss_pred             EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368          330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~  408 (487)
                      +|. +|.|.+||+++....+...+.|...+               +++++++|..++++++.|.+-++||+.+- ..+++
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kt  227 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKT  227 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccceeeeccce-eeEEE
Confidence            995 59999999998556677777777654               69999999999999999999999999876 32333


Q ss_pred             EeccCCccccceEeeCCccccccccceeeecccceecC----CCC------------CccccccccCCCeEEEEEcCCCC
Q 011368          409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN----SSS------------GHHELSYNLSSKLLHLAWHPTTN  472 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w----~~~------------~~~~~~~~~~~~v~~~~~spd~~  472 (487)
                      + ....|++..+++|..+-.      ++.|+.+-+.+-    +.+            +.+....+|-++|+++||||||+
T Consensus       228 y-~te~PvN~aaisP~~d~V------ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk  300 (327)
T KOG0643|consen  228 Y-TTERPVNTAAISPLLDHV------ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK  300 (327)
T ss_pred             e-eecccccceecccccceE------EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence            3 456789999999974443      456665544332    111            33345568889999999999999


Q ss_pred             EEEEecCCe-EEE
Q 011368          473 LIACANGNS-LFF  484 (487)
Q Consensus       473 ~la~~s~~~-~~i  484 (487)
                      ..++|+.|+ +.+
T Consensus       301 sYsSGGEDG~VR~  313 (327)
T KOG0643|consen  301 SYSSGGEDGYVRL  313 (327)
T ss_pred             ccccCCCCceEEE
Confidence            999999887 443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.7e-29  Score=240.54  Aligned_cols=314  Identities=13%  Similarity=0.230  Sum_probs=223.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEe--cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      ...|.+++.+|||..+|||+  .|+.++||+.+.--         .+.+....    .  -.+.+.+...|.        
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl---------~~~~~~~~----~--l~k~l~~m~~h~--------   69 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL---------DEKEEKNE----N--LPKHLCTMDDHD--------   69 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeecccccc---------chhhhhhc----c--cchhheeecccc--------
Confidence            45699999999999999999  99999999965221         00000000    0  122355666777        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          +.|+|++|  ++||++||+|+.|+.|.||...........                     .+    .......+.
T Consensus        70 ----~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f---------------------gs----~g~~~~vE~  118 (942)
T KOG0973|consen   70 ----GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVF---------------------GS----TGGAKNVES  118 (942)
T ss_pred             ----CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccc---------------------cc----cccccccce
Confidence                99999999  689999999999999999998741100000                     00    000011111


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                      |   ++... +.+|...|.+++|+|++.+++++ .|++|.+|+..+. ...+       .+.+|.+.|-.+.|+|-| ++
T Consensus       119 w---k~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~-------vl~~H~s~VKGvs~DP~G-ky  185 (942)
T KOG0973|consen  119 W---KVVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLK-------VLRGHQSLVKGVSWDPIG-KY  185 (942)
T ss_pred             e---eEEEE-EecCCCccceeccCCCccEEEEecccceEEEEccccc-eeee-------eeecccccccceEECCcc-Ce
Confidence            2   22233 37899999999999999999999 9999999999966 4444       368999999999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-----CCeEEEEeCCC
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----YMNLKLWDIRM  343 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-----d~~i~iwd~~~  343 (487)
                      ||+-+.|++|++|++.+-...    +.+..+.+ .      ..-...+..+.|||||++|++..     ...+.|.+-.+
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~----k~It~pf~-~------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t  254 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIE----KSITKPFE-E------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT  254 (942)
T ss_pred             eeeecCCceEEEEEcccceee----Eeeccchh-h------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence            999999999999997664333    33333110 0      11135688999999999999852     26788888765


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcC-----CCC------------EEEEEcCCCcEEEEEeCCCCcee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-----DGL------------HFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----d~~------------~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                       .+.-..+-+|..++               ..+.|+|     +.+            .+|+|+.|++|-||.....+.  
T Consensus       255 -Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP--  316 (942)
T KOG0973|consen  255 -WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP--  316 (942)
T ss_pred             -ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--
Confidence             67777888998865               5788887     111            567888888888888754422  


Q ss_pred             EEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEE
Q 011368          407 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFH  485 (487)
Q Consensus       407 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~  485 (487)
                                                                  +.....-+...|.+++|+|||-.|.++|.|+ ++++
T Consensus       317 --------------------------------------------l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  317 --------------------------------------------LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             --------------------------------------------hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence                                                        1112223556899999999999988888655 6655

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.3e-30  Score=219.16  Aligned_cols=292  Identities=19%  Similarity=0.274  Sum_probs=223.4

Q ss_pred             hhhhcCCCCCCccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE
Q 011368           16 CSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (487)
Q Consensus        16 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (487)
                      +...|..+-.+.+-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++                           .
T Consensus        50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~---------------------------~  102 (433)
T KOG0268|consen   50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC---------------------------I  102 (433)
T ss_pred             HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------------h
Confidence            33445555556678899999999999987 7899999999999999986655                           4


Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      .++++|.            +.|..|++.  .  ..+++++.|++|+.|.++... ...                      
T Consensus       103 ~~f~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~t----------------------  143 (433)
T KOG0268|consen  103 RTFKAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHT----------------------  143 (433)
T ss_pred             heeeccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-cee----------------------
Confidence            8899999            999999994  2  678999999999999987631 111                      


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  254 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  254 (487)
                                                .-....+..+.-+..+..+++|. ..|.|||..... ++.       .+.-..+
T Consensus       144 --------------------------ilg~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~-Pv~-------smswG~D  188 (433)
T KOG0268|consen  144 --------------------------ILGKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDN-PVS-------SMSWGAD  188 (433)
T ss_pred             --------------------------eeccccccccccccccccccccC-ceeeecccccCC-ccc-------eeecCCC
Confidence                                      12244566676666677777772 268899998433 332       2344456


Q ss_pred             cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368          255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      .|.++.|+|....+|+++..|+.|.|||++++..+...+..+                  .-+.|+|+|.+-.+++++ |
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------------------RTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------------------RTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec------------------cccceecCccccceeecccc
Confidence            799999999886788888899999999999988764333333                  348899999766666664 6


Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      ..++.||++....++....+|...+               .++.|||.|+-+++||.|.+|+||.++.+...        
T Consensus       251 ~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR--------  307 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR--------  307 (433)
T ss_pred             ccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCCCcch--------
Confidence            9999999998788888888888754               69999999999999999999999999876321        


Q ss_pred             CccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          414 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       414 ~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                                  +-.                          ...--..|.+|.||.|.+++++||+|+ +.+|.|
T Consensus       308 ------------diY--------------------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  308 ------------DIY--------------------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ------------hhh--------------------------hHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence                        000                          011123678999999999999999664 888865

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.5e-28  Score=227.95  Aligned_cols=253  Identities=16%  Similarity=0.247  Sum_probs=207.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      -..|.++|..++|+|++.++++|+.|-.|+||+..+.++                           +.++.||-      
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc---------------------------lftL~GHl------   93 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC---------------------------LFTLLGHL------   93 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEeccccee---------------------------hhhhcccc------
Confidence            346899999999999999999999999999999886655                           58899998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            +-|..+.|+  +.-.+++++|.|.+|+||+..+++++..                                   
T Consensus        94 ------DYVRt~~FH--heyPWIlSASDDQTIrIWNwqsr~~iav-----------------------------------  130 (1202)
T KOG0292|consen   94 ------DYVRTVFFH--HEYPWILSASDDQTIRIWNWQSRKCIAV-----------------------------------  130 (1202)
T ss_pred             ------ceeEEeecc--CCCceEEEccCCCeEEEEeccCCceEEE-----------------------------------
Confidence                  889999996  5677999999999999999999987766                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce----e-------------EEe---e-cC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC----F-------------NIV---D-MK  245 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~----~-------------~~~---~-~~  245 (487)
                                  +.+|...|.|.+|+|....++++ -|.+|++||+..-.+.    .             .++   + .-
T Consensus       131 ------------ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  131 ------------LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             ------------EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence                        48999999999999999999999 9999999998731100    0             000   0 00


Q ss_pred             CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC
Q 011368          246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  325 (487)
Q Consensus       246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~  325 (487)
                      .+.+++|...|+.++|+|.- .+|++|++|+.|++|.+...+       .|+.        ..+.+|.+.|.++.|+|..
T Consensus       199 K~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetK-------aWEv--------DtcrgH~nnVssvlfhp~q  262 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK-------AWEV--------DTCRGHYNNVSSVLFHPHQ  262 (1202)
T ss_pred             eeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccc-------ceee--------hhhhcccCCcceEEecCcc
Confidence            13578999999999999998 999999999999999987653       3333        2356789999999999999


Q ss_pred             CEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          326 QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       326 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +++++. .|++|+|||+.. ...+..++.....               .+.++-+|..+++++| .|+-+.||.++.
T Consensus       263 ~lIlSnsEDksirVwDm~k-Rt~v~tfrrendR---------------FW~laahP~lNLfAAg-HDsGm~VFkleR  322 (1202)
T KOG0292|consen  263 DLILSNSEDKSIRVWDMTK-RTSVQTFRRENDR---------------FWILAAHPELNLFAAG-HDSGMIVFKLER  322 (1202)
T ss_pred             ceeEecCCCccEEEEeccc-ccceeeeeccCCe---------------EEEEEecCCcceeeee-cCCceEEEEEcc
Confidence            999986 579999999986 8888888755442               1689999999877755 455567888874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.4e-30  Score=220.43  Aligned_cols=283  Identities=20%  Similarity=0.233  Sum_probs=223.9

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|..+.|-++...|++|+.|..|++|++..++.                         ..+.++.|-.      
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~------  219 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL------  219 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC------
Confidence            445888999999999989999999999999999877642                         2356677776      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ++|+++.|  .+++.++++++.|+.+++|++...+....                                   
T Consensus       220 ------g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T-----------------------------------  256 (459)
T KOG0288|consen  220 ------GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT-----------------------------------  256 (459)
T ss_pred             ------CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh-----------------------------------
Confidence                  88999999  68899999999999999999998876544                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +.+|.+.|+++.|......+++| .|.+|++||+.. ..|.+.+      +  ..+.+..+..+  . 
T Consensus       257 ------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~------l--~~S~cnDI~~~--~-  312 (459)
T KOG0288|consen  257 ------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTV------L--PGSQCNDIVCS--I-  312 (459)
T ss_pred             ------------hcccccceeeehhhccccceeeccccchhhhhhhhh-hheeccc------c--ccccccceEec--c-
Confidence                        48999999999998776668899 999999999994 5555432      1  22334555555  3 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ..+++|..|+.||+||.++....    .....              .+.|+++..+++|..|.+++ |.++.+.|+++ .
T Consensus       313 ~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~  373 (459)
T KOG0288|consen  313 SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT-K  373 (459)
T ss_pred             eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCCCceeeeeccc-c
Confidence            67899999999999999987754    55555              36899999999999888875 69999999997 6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC--ccccceEee
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN--ENRKPILQA  423 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~  423 (487)
                      .....+.+....           +--+.+.+.|||++.|+++||.||.|+||++.+++. ...++....  .|.+++|.|
T Consensus       374 eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-E~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  374 EIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-EKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             cEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCceE-EEEeccCCCCcceEEEEEcC
Confidence            666666654432           111236899999999999999999999999999854 444544444  499999998


Q ss_pred             CCccccccccceeeecccce-ecC
Q 011368          424 APRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      .  |..     |++++.+.. .+|
T Consensus       442 s--G~~-----Llsadk~~~v~lW  458 (459)
T KOG0288|consen  442 S--GSG-----LLSADKQKAVTLW  458 (459)
T ss_pred             C--Cch-----hhcccCCcceEec
Confidence            4  444     778887777 777

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.5e-28  Score=213.17  Aligned_cols=270  Identities=17%  Similarity=0.271  Sum_probs=207.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cCCCccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLK  108 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~  108 (487)
                      .|.-+|.|++++|++++.++++.+++|.-|++.+++..      +..++.+.-    ....+.....- ++|.       
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~------~~i~~~~ev----~k~~~~~~k~~r~~h~-------  202 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD------RYIIERDEV----LKSHGNPLKESRKGHV-------  202 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCccc------ccccccchh----hhhccCCCCccccccc-------
Confidence            47889999999999999999999999999999988743      111111000    00000011111 2555       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++.  ++|+++|++|+.|..|.||+.++.+..+.                                    
T Consensus       203 -----keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~------------------------------------  239 (479)
T KOG0299|consen  203 -----KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV------------------------------------  239 (479)
T ss_pred             -----ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc------------------------------------
Confidence                 77999999  68999999999999999999999875543                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +.+|.+.|.+++|-.....++++ .|++|++|+++... .+       .++.+|.+.|..+.-..-+ .
T Consensus       240 -----------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~v-------etlyGHqd~v~~IdaL~re-R  299 (479)
T KOG0299|consen  240 -----------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YV-------ETLYGHQDGVLGIDALSRE-R  299 (479)
T ss_pred             -----------ccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HH-------HHHhCCccceeeechhccc-c
Confidence                       48999999999998877788887 99999999998333 22       2568999999999988877 7


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~  346 (487)
                      .+.+|+.|+++++|++.....     .+|.+             |.+.+.|++|-.+ ..+++|+| |.|.+|++.. .+
T Consensus       300 ~vtVGgrDrT~rlwKi~eesq-----lifrg-------------~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K-Kk  359 (479)
T KOG0299|consen  300 CVTVGGRDRTVRLWKIPEESQ-----LIFRG-------------GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLK-KK  359 (479)
T ss_pred             eEEeccccceeEEEeccccce-----eeeeC-------------CCCCeeeEEEecc-cceeeccCCceEEEeeecc-cC
Confidence            777888999999999954321     34555             4678999999865 46777765 9999999987 88


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++.+.+...+..+.......+   +++++++..|...++|+|+.+|.|++|.+..+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            888887665554433222222   46689999999999999999999999999987

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-27  Score=197.84  Aligned_cols=269  Identities=17%  Similarity=0.233  Sum_probs=203.4

Q ss_pred             cCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCC-cCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        32 ~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .+.|.+|+||| ...++++|+-||+||+|+++.. ...                          -+....|.        
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--------------------------~ka~~~~~--------   72 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--------------------------PKAQQSHD--------   72 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCccc--------------------------chhhhccC--------
Confidence            56799999999 5567778999999999999863 221                          13344566        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ++|.+++|  +.+|..+++|+.|+.+++||+.+++...+                                     
T Consensus        73 ----~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v-------------------------------------  109 (347)
T KOG0647|consen   73 ----GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV-------------------------------------  109 (347)
T ss_pred             ----CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-------------------------------------
Confidence                99999999  68999999999999999999999987665                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                 ..|..+|.++.|-+..  ..|++| .|++|+.||.+. ...+..++        ..+.++++..-  . 
T Consensus       110 -----------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~--------LPeRvYa~Dv~--~-  166 (347)
T KOG0647|consen  110 -----------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQ--------LPERVYAADVL--Y-  166 (347)
T ss_pred             -----------eecccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeee--------ccceeeehhcc--C-
Confidence                       7899999999996644  489999 999999999994 44444432        23556766653  3 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+++++..++.|.+|+++++.      ..++.+ .+|        -.-.+++++..+|.+..+.|+ .|.+-|..+.. .
T Consensus       167 pm~vVata~r~i~vynL~n~~------te~k~~-~Sp--------Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~-~  230 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPP------TEFKRI-ESP--------LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD-P  230 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCc------chhhhh-cCc--------ccceeeEEEEEecCCceEeeeecceEEEEecCC-C
Confidence            678999999999999998865      233331 111        134789999988887777776 59999998875 4


Q ss_pred             --ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          346 --TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       346 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                        +.-..|+.|.....      ..+.++.|.+++|+|.-..|+|+|.||++.+||-... ..+.+.+.|..+|++..|..
T Consensus       231 ~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  231 NPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             CccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecC
Confidence              44566777875321      2235778899999999999999999999999997654 33555555666666655554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.6e-27  Score=216.85  Aligned_cols=241  Identities=27%  Similarity=0.402  Sum_probs=199.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...+.++.|+|++++|++++.||.|++|++.+++.                           ...+..|.      
T Consensus        47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---------------------------~~~~~~~~------   93 (289)
T cd00200          47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---------------------------VRTLTGHT------   93 (289)
T ss_pred             EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc---------------------------eEEEeccC------
Confidence            345778899999999999999999999999999987543                           35667777      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.++.|+  +++.++++++.|+.|++||+.+++....                                   
T Consensus        94 ------~~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------------------------------  130 (289)
T cd00200          94 ------SYVSSVAFS--PDGRILSSSSRDKTIKVWDVETGKCLTT-----------------------------------  130 (289)
T ss_pred             ------CcEEEEEEc--CCCCEEEEecCCCeEEEEECCCcEEEEE-----------------------------------
Confidence                  789999995  5677888888899999999986654432                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +..|...+.+++|+|++++++++ .|+.|++||++... ...       .+..|...+.++.|+|++ 
T Consensus       131 ------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~-  189 (289)
T cd00200         131 ------------LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVA-------TLTGHTGEVNSVAFSPDG-  189 (289)
T ss_pred             ------------eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cce-------eEecCccccceEEECCCc-
Confidence                        25788899999999999999998 69999999998433 332       234677789999999998 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ..+++++.++.|++||++.++..    ..+..             |...+.++.|+|++.++++++ ++.|++||+.+ +
T Consensus       190 ~~l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~  251 (289)
T cd00200         190 EKLLSSSSDGTIKLWDLSTGKCL----GTLRG-------------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-G  251 (289)
T ss_pred             CEEEEecCCCcEEEEECCCCcee----cchhh-------------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-c
Confidence            89999999999999999886543    33433             356899999999998999887 79999999986 7


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      .....+..|...+               .+++|+|++++|++++.||.|++|+
T Consensus       252 ~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 ECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeEEecC
Confidence            7777787666543               5999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-28  Score=196.22  Aligned_cols=244  Identities=19%  Similarity=0.234  Sum_probs=202.8

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      ...+..|+            ++|..++|  +-+|++.++++.|++|++|+...+.+++.                     
T Consensus        10 ~~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt---------------------   54 (307)
T KOG0316|consen   10 LSILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT---------------------   54 (307)
T ss_pred             ceeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee---------------------
Confidence            46677888            99999999  68999999999999999999999886655                     


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                               | .+|...|..++.+.|...|++| .|..+.+||+++++. .       +++.+|
T Consensus        55 -------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv-~-------Rr~rgH  100 (307)
T KOG0316|consen   55 -------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV-D-------RRFRGH  100 (307)
T ss_pred             -------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcccCee-e-------eecccc
Confidence                                     3 8999999999999999999999 999999999996554 3       357899


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      .+.|+.+.|+.+. ..+++|+.|..+++||.++..  ..+++++..             -...|.++..+  +..|++|+
T Consensus       101 ~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s--~ePiQilde-------------a~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen  101 LAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS--FEPIQILDE-------------AKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             cceeeEEEecCcc-eEEEeccccceeEEEEcccCC--CCccchhhh-------------hcCceeEEEec--ccEEEeec
Confidence            9999999999998 999999999999999999864  223344443             24678888886  45777775


Q ss_pred             -CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                       ||+++.||++. +....-+-+|.-                 ++++|++|++..++++-|+++++.|-.+| +.+...++
T Consensus       163 ~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkG  223 (307)
T KOG0316|consen  163 VDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKG  223 (307)
T ss_pred             cCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcc
Confidence             79999999997 665544444432                 69999999999999999999999999998 56889999


Q ss_pred             cCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          412 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       412 ~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      |.+.-..+..........     .++|++||. .+|+.
T Consensus       224 hkn~eykldc~l~qsdth-----V~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTH-----VFSGSEDGKVYFWDL  256 (307)
T ss_pred             cccceeeeeeeeccccee-----EEeccCCceEEEEEe
Confidence            998777666655444445     899999999 99954

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.1e-28  Score=222.57  Aligned_cols=240  Identities=18%  Similarity=0.284  Sum_probs=205.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~  110 (487)
                      .+.|+++.|+++|.+||+|..+|.|.|||....+.                           ...+.+ |.         
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------------------------~~~~~~~h~---------  260 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------------------------TRTLRGSHA---------  260 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---------------------------cccccCCcC---------
Confidence            57899999999999999999999999999887765                           356666 77         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ..|.+++|.    +..+.+|+.|+.|..+|++..+....                                      
T Consensus       261 ---~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~--------------------------------------  295 (484)
T KOG0305|consen  261 ---SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS--------------------------------------  295 (484)
T ss_pred             ---ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence               899999993    56888999999999999987653211                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                              .+.+|...|..+.|++|++++|+| .|+.+.|||........        .+.+|...|..++|+|-...+|
T Consensus       296 --------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--------~~~~H~aAVKA~awcP~q~~lL  359 (484)
T KOG0305|consen  296 --------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--------TFTEHTAAVKALAWCPWQSGLL  359 (484)
T ss_pred             --------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE--------EEeccceeeeEeeeCCCccCce
Confidence                    137899999999999999999999 99999999996444433        3578999999999999877899


Q ss_pred             EEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e--CCeEEEEeCCCC
Q 011368          270 AYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D--YMNLKLWDIRMD  344 (487)
Q Consensus       270 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~--d~~i~iwd~~~~  344 (487)
                      |+|+  .|+.|++||..++..+    .....              ...|..+.|++..+.|+++ +  ++.|.||+..+ 
T Consensus       360 AsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-  420 (484)
T KOG0305|consen  360 ATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-  420 (484)
T ss_pred             EEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-
Confidence            9976  4999999999998765    33333              4789999999999878775 2  48999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .+.+..+.+|...+               ..+++||||..+++|+.|.++++|++-..
T Consensus       421 ~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  421 MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence            88899999999865               58999999999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.9e-27  Score=244.12  Aligned_cols=257  Identities=13%  Similarity=0.184  Sum_probs=193.5

Q ss_pred             ccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      +.+...|.+++|++. +.+||+++.||+|+|||+.+++.                           +..+.+|.      
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------------~~~~~~H~------  575 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------------VTEMKEHE------  575 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------------EEEecCCC------
Confidence            334567999999874 78999999999999999886653                           57788998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            +.|.+++|+| +++.+|++|+.|++|++||+.++.....                                   
T Consensus       576 ------~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-----------------------------------  613 (793)
T PLN00181        576 ------KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGT-----------------------------------  613 (793)
T ss_pred             ------CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEE-----------------------------------
Confidence                  8999999964 4678999999999999999987764432                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeC-CCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  +. +...|.++.|+ +++.+|++| .|+.|++||++.......       .+.+|...|.++.|. ++
T Consensus       614 ------------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~-------~~~~h~~~V~~v~f~-~~  672 (793)
T PLN00181        614 ------------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC-------TMIGHSKTVSYVRFV-DS  672 (793)
T ss_pred             ------------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce-------EecCCCCCEEEEEEe-CC
Confidence                        12 23578899995 579999999 999999999985443332       346899999999997 55


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccc--cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~  342 (487)
                       .+|++++.|+.|++||++.+...  ...+..+             .+|...+..+.|+|++.+|++|+ |+.|++|+..
T Consensus       673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSF-------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             -CEEEEEECCCEEEEEeCCCCccccCCcceEEE-------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence             79999999999999999854210  0112333             44678899999999999999986 5999999987


Q ss_pred             CCCceeeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          343 MDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       343 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      . ..++..+.... ..+..+. .  .+....|.+++|+|++..|++|+.||.|+||++
T Consensus       739 ~-~~~~~s~~~~~~~~~~~~~-~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        739 F-PMPVLSYKFKTIDPVSGLE-V--DDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             C-CCceEEEecccCCcccccc-c--CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            5 44443332111 0100000 0  011112469999999999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-28  Score=228.18  Aligned_cols=264  Identities=15%  Similarity=0.171  Sum_probs=173.0

Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccc--------c---cccc--ccccC
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL--------A---EKNF--MNEHN  178 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~--~~~~~  178 (487)
                      ++++|.++.|  ++||+|||+||.|+.|+||.+...+...........-...+.-.+        .   .+..  .....
T Consensus       266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            3499999999  689999999999999999999874432221110000000000000        0   0000  00000


Q ss_pred             CCCcceeeeee-eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368          179 PPSFAHGYHLE-WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  256 (487)
                      ......++... -=..+++..+ .+|.+.|.+++|+.++ +|+++ .|.+|++|++. ...|+.+        ..|.+.|
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~--------F~HndfV  412 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKV--------FSHNDFV  412 (712)
T ss_pred             CCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeE--------EecCCee
Confidence            00000011000 0123455555 8999999999999765 66676 99999999999 6667765        3799999


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-Ce
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  335 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~  335 (487)
                      +||+|+|...++|++|+-||.||||++...+..     .+..             -..-|++++|.|||++.+.|+. |.
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avIGt~~G~  474 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVIGTFNGY  474 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEEEEeccE
Confidence            999999977699999999999999999887643     2222             1367999999999999999985 99


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      +++|+... .+....+..+.....+       ..-..|+++.|.|. ...|++.+.|..|+|||.++. ..+..+++..+
T Consensus       475 C~fY~t~~-lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n  545 (712)
T KOG0283|consen  475 CRFYDTEG-LKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRN  545 (712)
T ss_pred             EEEEEccC-CeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhccccc
Confidence            99999874 5544443322211000       00002479999873 345778899999999999765 34555555544


Q ss_pred             c
Q 011368          415 E  415 (487)
Q Consensus       415 ~  415 (487)
                      .
T Consensus       546 ~  546 (712)
T KOG0283|consen  546 T  546 (712)
T ss_pred             C
Confidence            3

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.6e-29  Score=211.63  Aligned_cols=240  Identities=18%  Similarity=0.297  Sum_probs=194.9

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...+|++.|.|++|.  .+.|++|+.|.+|+|||+++++.                           +.++-+|.     
T Consensus       232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~---------------------------l~tlihHc-----  277 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP---------------------------LNTLIHHC-----  277 (499)
T ss_pred             hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch---------------------------hhHHhhhc-----
Confidence            356799999999986  45999999999999999999976                           47888898     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|..+.|+    ..++++++.|.++.+||+....-+                                    
T Consensus       278 -------eaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~i------------------------------------  310 (499)
T KOG0281|consen  278 -------EAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDI------------------------------------  310 (499)
T ss_pred             -------ceeEEEEEe----CCEEEEecCCceeEEEeccCchHH------------------------------------
Confidence                   999999993    459999999999999999865421                                    


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                             .+.+ .+.+|...|+.+.|+  .++|+++ .|.+|++|++.+ ...++       ++.+|...|.|+.+.  +
T Consensus       311 -------t~rr-VLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvR-------tl~gHkRGIAClQYr--~  370 (499)
T KOG0281|consen  311 -------TLRR-VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVR-------TLNGHKRGIACLQYR--D  370 (499)
T ss_pred             -------HHHH-HHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeeh-------hhhcccccceehhcc--C
Confidence                   1222 248999999999996  5699999 999999999994 44554       468999999999885  5


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       .++++|+.|.+|++||+..|.++    +.+++|             +.-|.++.|.  .+.+++|. ||+|++||+...
T Consensus       371 -rlvVSGSSDntIRlwdi~~G~cL----RvLeGH-------------EeLvRciRFd--~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  371 -RLVVSGSSDNTIRLWDIECGACL----RVLEGH-------------EELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             -eEEEecCCCceEEEEeccccHHH----HHHhch-------------HHhhhheeec--CceeeeccccceEEEEecccc
Confidence             89999999999999999999876    777775             7889999996  56888886 599999999763


Q ss_pred             Cc--------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          345 ST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       345 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ..        ++..+..|.+.               |+.+.|  |...|++++.|.+|.|||..++..
T Consensus       431 ldpra~~~~~Cl~~lv~hsgR---------------VFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  431 LDPRAPASTLCLRTLVEHSGR---------------VFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cCCcccccchHHHhhhhccce---------------eEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            22        23333344432               257888  567899999999999999988743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=4.8e-28  Score=206.39  Aligned_cols=273  Identities=18%  Similarity=0.252  Sum_probs=200.8

Q ss_pred             cccccCcEEEEEEcCCC---CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTG---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~---~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ..+|.++|.+++|--..   ..|++++.|.++++|..+.++..                       .+.....+||+   
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------------~~~~~~~~GHk---  193 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------------VKALKVCRGHK---  193 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------------hhHHhHhcccc---
Confidence            45699999988875433   35999999999999999877642                       22233445898   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               ..|.+|+.  .++|..+++|+.|.+|+||+...............                     .....
T Consensus       194 ---------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~---------------------rrk~~  241 (423)
T KOG0313|consen  194 ---------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR---------------------RRKKQ  241 (423)
T ss_pred             ---------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchh---------------------hhhhh
Confidence                     99999998  58899999999999999999433221111000000                     00000


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                      .....-....++.+ +.+|..+|.++.|++ ...++++ .|.+|+.||+.+++....+         ..+..+.|++.+|
T Consensus       242 ~~~~~~~~r~P~vt-l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~---------~~~ksl~~i~~~~  310 (423)
T KOG0313|consen  242 KREKEGGTRTPLVT-LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL---------TTNKSLNCISYSP  310 (423)
T ss_pred             hhhhcccccCceEE-ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---------ecCcceeEeeccc
Confidence            00000011223333 489999999999998 6677787 9999999999977655443         2345689999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EEe-CCeEEEEeC
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDI  341 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~-d~~i~iwd~  341 (487)
                      .. .+|++|+.|..|++||.+++.-. -....             +.+|.+.|.++.|+|...+++ +++ |+++++||+
T Consensus       311 ~~-~Ll~~gssdr~irl~DPR~~~gs-~v~~s-------------~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  311 LS-KLLASGSSDRHIRLWDPRTGDGS-VVSQS-------------LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             cc-ceeeecCCCCceeecCCCCCCCc-eeEEe-------------eecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence            88 99999999999999999986421 01122             456799999999999877655 565 699999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      ++...++..+.+|...+               .++.|. ++.+|++||.|.+|+|+.-.
T Consensus       376 RS~k~plydI~~h~DKv---------------l~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  376 RSTKAPLYDIAGHNDKV---------------LSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ccCCCcceeeccCCceE---------------EEEecc-CCceEEeccCcceEEEeccc
Confidence            98666999999998754               589998 57799999999999998754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3e-27  Score=216.91  Aligned_cols=364  Identities=15%  Similarity=0.169  Sum_probs=244.9

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      -.++.|++....|.+...|..++|||+++-...                       .+. ..+--|.            .
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----------------------gk~-~s~lyHS------------~  370 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----------------------GKC-SSMLYHS------------A  370 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccc-----------------------cce-eeeeecc------------c
Confidence            347889999999999999999999999876542                       111 2233455            3


Q ss_pred             ceeEEEEEe----------cCCCcEEEEEeCCCcEEEEEccccceeEeeecC-CCCceeeeeccccccccccccCCCCcc
Q 011368          115 KINRVRWCA----------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       115 ~I~~v~~~~----------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                      .|+.|.-.|          -| ...|.+++.|++|++|++..+....+...+ ...+...+.+...+..++-....+...
T Consensus       371 ciW~Ve~~p~nv~~~~~aclp-~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fd  449 (1080)
T KOG1408|consen  371 CIWDVENLPCNVHSPTAACLP-RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFD  449 (1080)
T ss_pred             eeeeeccccccccCcccccCC-ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccc
Confidence            344443322          12 235899999999999999874333332211 122222233333322222221111111


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                      .-...           .-.....+++++.+|+|++||+| .-|++++|++..-...        ..+++|...|.|+.|+
T Consensus       450 ka~~s-----------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--------~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  450 KALVS-----------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--------CFMEAHESEILCLEYS  510 (1080)
T ss_pred             ccchh-----------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh--------hheecccceeEEEeec
Confidence            10000           13445679999999999999999 9999999999844332        2468999999999998


Q ss_pred             cC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEE-EeCCeEE
Q 011368          263 PI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLS-RDYMNLK  337 (487)
Q Consensus       263 p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s-~~d~~i~  337 (487)
                      .-  +.++||+++.|+.|++||....-.+   ..++.             +|...|+++.|..+|  ..+++ |.|..|.
T Consensus       511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l---~qtld-------------~HSssITsvKFa~~gln~~MiscGADksim  574 (1080)
T KOG1408|consen  511 FPVLTNKLLASASRDRLIHVYDVKRNYDL---VQTLD-------------GHSSSITSVKFACNGLNRKMISCGADKSIM  574 (1080)
T ss_pred             CchhhhHhhhhccCCceEEEEecccccch---hhhhc-------------ccccceeEEEEeecCCceEEEeccCchhhh
Confidence            42  2278999999999999999875322   24444             468999999998776  44554 5676665


Q ss_pred             EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc-c
Q 011368          338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-N  416 (487)
Q Consensus       338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-v  416 (487)
                      +--.+. ......+..|.....       ...+   .+|+..|..+++++++.|..|+||++++++ ..+.+++..+. -
T Consensus       575 Fr~~qk-~~~g~~f~r~t~t~~-------ktTl---YDm~Vdp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  575 FRVNQK-ASSGRLFPRHTQTLS-------KTTL---YDMAVDPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEG  642 (1080)
T ss_pred             eehhcc-ccCceeccccccccc-------cceE---EEeeeCCCcceEEEEecccceEEEeccccc-eeeeecccccCCC
Confidence            543332 222333333333221       1122   599999999999999999999999999984 46777765443 2


Q ss_pred             ccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                      .-+.....+.+.+     +++...|.. .+.  ..++.....++|..-|+.+.|.+|-++|+++++|+ ||||..
T Consensus       643 ~lIKv~lDPSgiY-----~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  643 DLIKVILDPSGIY-----LATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             ceEEEEECCCccE-----EEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            3333333346667     888888877 555  67788889999999999999999999999888665 999974

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2e-26  Score=219.73  Aligned_cols=240  Identities=16%  Similarity=0.246  Sum_probs=170.9

Q ss_pred             eEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      .+..+.+|.            +.|.+++|+| .++.+|++|+.|++|++||+.++...... .                 
T Consensus        66 ~v~~L~gH~------------~~V~~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i-----------------  114 (568)
T PTZ00420         66 PVIKLKGHT------------SSILDLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKE-I-----------------  114 (568)
T ss_pred             eEEEEcCCC------------CCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCCccccc-c-----------------
Confidence            357789999            8999999964 23689999999999999999764311000 0                 


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                          ..+... +.+|...|.+++|+|++..+ +++ .|++|++||++++.....        +.
T Consensus       115 --------------------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~  165 (568)
T PTZ00420        115 --------------------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN  165 (568)
T ss_pred             --------------------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee
Confidence                                001111 37899999999999988765 677 999999999995543322        12


Q ss_pred             CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccce-----eEEEEcCCC
Q 011368          251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-----SDIKFANDG  325 (487)
Q Consensus       251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-----~~v~~s~~~  325 (487)
                       |...|.+++|+|+| .+|++++.|+.|+|||+++++.+    ..+.+|             .+.+     ....|++++
T Consensus       166 -~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~gH-------------~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        166 -MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHIH-------------DGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             -cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEEecc-------------cCCceeEEEEeeeEcCCC
Confidence             45679999999999 99999999999999999998754    556664             3332     334466898


Q ss_pred             CEEEEEe-C----CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          326 QHLLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       326 ~~l~s~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      .+|++++ +    +.|+|||++....++..+..+....          .+   ...-..++|.++++|+.|+.|++|++.
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~----------~L---~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA----------PL---IPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc----------ce---EEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            8888753 3    3799999986566776654443221          00   122234568899999999999999998


Q ss_pred             CCCceeEEEeccCCccccceEeeC
Q 011368          401 VGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       401 ~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      .+......-..+..+...++|.|.
T Consensus       294 ~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        294 LGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             CCcEEeecccccCCCccceEEccc
Confidence            764322222235677788888885

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.1e-26  Score=191.54  Aligned_cols=276  Identities=15%  Similarity=0.156  Sum_probs=208.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .+.|+.+.|+|.++.|++++-||++++|++...+.                            ...-.|+          
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----------------------------~~~~~~~----------   54 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----------------------------KLKFKHG----------   54 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----------------------------hhheecC----------
Confidence            45799999999999999999999999999876643                            1122355          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .++.+.+|   .+...+++|+.||.|+++|+.++....+                                       
T Consensus        55 --~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~i---------------------------------------   90 (323)
T KOG1036|consen   55 --APLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQI---------------------------------------   90 (323)
T ss_pred             --Cceeeeec---cCCceEEEeccCceEEEEEecCCcceee---------------------------------------
Confidence              88999999   3467899999999999999999875543                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                               ..|...|.||..++....+++| .|++|++||.+. ......        ......|.++...  + +.|+
T Consensus        91 ---------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~--------~d~~kkVy~~~v~--g-~~Lv  149 (323)
T KOG1036|consen   91 ---------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVGT--------FDQGKKVYCMDVS--G-NRLV  149 (323)
T ss_pred             ---------ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccccc--------cccCceEEEEecc--C-CEEE
Confidence                     7899999999999988888888 999999999994 322221        1223478888765  4 6799


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC---Cc
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD---ST  346 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~---~~  346 (487)
                      +|+.+..+.+||+++.....+ .+.              ..-...++++++-|++.-.++++ +|.|.+=.+...   ..
T Consensus       150 Vg~~~r~v~iyDLRn~~~~~q-~re--------------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s  214 (323)
T KOG1036|consen  150 VGTSDRKVLIYDLRNLDEPFQ-RRE--------------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS  214 (323)
T ss_pred             EeecCceEEEEEcccccchhh-hcc--------------ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh
Confidence            999999999999998653310 011              11145789999999877666654 799888666541   13


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      ....|+.|....      ...+-++.|.+++|+|-.+.+|||+.||.|.+||+.+.+..                     
T Consensus       215 kkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl---------------------  267 (323)
T KOG1036|consen  215 KKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL---------------------  267 (323)
T ss_pred             hceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh---------------------
Confidence            456677776532      12334567789999999999999999999999999876331                     


Q ss_pred             cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec
Q 011368          427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s  478 (487)
                                                ..+..+...|..++|+.||..||+|+
T Consensus       268 --------------------------~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  268 --------------------------KQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             --------------------------hhccCCCCceEEEEeccCCCeEEEEe
Confidence                                      12233445788999999999999887

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=201.20  Aligned_cols=244  Identities=18%  Similarity=0.275  Sum_probs=197.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...+.++...|....+.+|+.|..+.++|...++.                           +.+++||.          
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------l~~~~Gh~----------  261 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------------LATLKGHT----------  261 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------------hhhccCcc----------
Confidence            34688999988888999999999999999776654                           58899999          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        ..|+.+.|+  ++...+++++.|..|++|..........                                       
T Consensus       262 --kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s~~~~---------------------------------------  298 (506)
T KOG0289|consen  262 --KKITSVKFH--KDLDTVITASADEIIRVWSVPLSSEPTS---------------------------------------  298 (506)
T ss_pred             --eEEEEEEec--cchhheeecCCcceEEeeccccccCccc---------------------------------------
Confidence              889999995  6777899999999999999876653322                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                              ...|..+|+.+..+|.|.+|+++ .|+...+.|++.+.......      -+...-.+++.+|+||| .+|.
T Consensus       299 --------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~fHpDg-Lifg  363 (506)
T KOG0289|consen  299 --------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEYTSAAFHPDG-LIFG  363 (506)
T ss_pred             --------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe------eccccceeEEeeEcCCc-eEEe
Confidence                    37899999999999999999999 99999999999655443321      11223458999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      +|..|+.|+|||+.++...    ..             |++|+++|..++|+.||.||+++. |+.|++||++. .+...
T Consensus       364 tgt~d~~vkiwdlks~~~~----a~-------------Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~k  425 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNV----AK-------------FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFK  425 (506)
T ss_pred             ccCCCceEEEEEcCCcccc----cc-------------CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccc
Confidence            9999999999999986533    33             455799999999999999999986 48899999997 55666


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++......              .+.+++|.+.|++|+.++.|=.|++++-.+.
T Consensus       426 t~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k  464 (506)
T KOG0289|consen  426 TIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK  464 (506)
T ss_pred             eeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence            66554431              1258999999999999988766666664433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=3.1e-26  Score=209.68  Aligned_cols=411  Identities=13%  Similarity=0.115  Sum_probs=269.9

Q ss_pred             CccccccCcEEEEEEcCCCC---EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE--------
Q 011368           26 DEELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK--------   94 (487)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~---~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   94 (487)
                      .+.-+|.+-|.+++|...+.   +||+++.|..||||.+.-+....   ...++   .........|.+...        
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~---~~~~e---~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED---SNERE---DSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc---ccccc---cccccccCCceeeeeeeEEEEEe
Confidence            35667999999999997554   88999999999999986443110   00000   000011112222222        


Q ss_pred             --eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc--eeEeeecCC---CC-ceeeeec
Q 011368           95 --TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDH---FP-FVSSENT  166 (487)
Q Consensus        95 --~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~---~~-~~~~~~~  166 (487)
                        ..+.||+            +.|+++.|+  |++..|++++.|.++.+|...+..  .........   .. ......+
T Consensus       259 ~eall~GHe------------DWV~sv~W~--p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw  324 (764)
T KOG1063|consen  259 FEALLMGHE------------DWVYSVWWH--PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW  324 (764)
T ss_pred             hhhhhcCcc------------cceEEEEEc--cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence              2344777            999999994  678889999999999999876542  222211111   00 1111222


Q ss_pred             cccccccccccCCCCcceeeeeeeeccc-eeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeec
Q 011368          167 LLAEKNFMNEHNPPSFAHGYHLEWTENM-ATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  244 (487)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~  244 (487)
                       .+++..+.+.+....-+..... +... .....+.+|.+.|.+++|.|.|.+|.+. .|.+-+++-.-..+....-+  
T Consensus       325 -~~n~~~ii~~g~~Gg~hlWkt~-d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--  400 (764)
T KOG1063|consen  325 -SPNSNVIIAHGRTGGFHLWKTK-DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--  400 (764)
T ss_pred             -cCCCCEEEEecccCcEEEEecc-CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--
Confidence             2233333333222222222100 0011 1122358999999999999999999998 99999998665222222221  


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcc-----------------c---------cccceeec-
Q 011368          245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL-----------------C---------DHSARILR-  297 (487)
Q Consensus       245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-----------------~---------~~~~~~~~-  297 (487)
                        .+-+-|...++|++|-+.. ..+++|.++..+|+|+....-.                 .         ......+. 
T Consensus       401 --aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~  477 (764)
T KOG1063|consen  401 --ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG  477 (764)
T ss_pred             --cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence              2334577788999998854 7899999999999998764110                 0         00000010 


Q ss_pred             ----c-c----c------------cccCc-----------cccccccccceeEEEEcCCCCEEEEEe-----C-CeEEEE
Q 011368          298 ----D-A----A------------ESHGS-----------KSFFTEIIASISDIKFANDGQHLLSRD-----Y-MNLKLW  339 (487)
Q Consensus       298 ----~-h----~------------~~~~~-----------~~~~~~~~~~v~~v~~s~~~~~l~s~~-----d-~~i~iw  339 (487)
                          + +    .            .+|..           ...+.||-..|.+++.+|+|+++|++.     . ..|++|
T Consensus       478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw  557 (764)
T KOG1063|consen  478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLW  557 (764)
T ss_pred             ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEE
Confidence                0 0    0            00000           022467999999999999999999853     1 679999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc---eeEEEeccCCcc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEAGKNEN  416 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~~v  416 (487)
                      +..+ ...+..+..|.-.+               +.++|||||++|++.+.|.++.+|.......   ....++.|...|
T Consensus       558 ~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII  621 (764)
T KOG1063|consen  558 NTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII  621 (764)
T ss_pred             eccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE
Confidence            9987 77777899999865               7999999999999999999999999975432   233478999999


Q ss_pred             ccceEeeCCccccccccceeeecccce-ecCCCCCc----cc--cccccCCCeEEEEEcCCC-C----EEEEecCCe-EE
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HE--LSYNLSSKLLHLAWHPTT-N----LIACANGNS-LF  483 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~----~~--~~~~~~~~v~~~~~spd~-~----~la~~s~~~-~~  483 (487)
                      .+..++|  +...     ++++++|.. ++|...+.    +.  ....+...|+.++|.|-. +    .+|+|-..| ++
T Consensus       622 WdcsW~p--de~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~  694 (764)
T KOG1063|consen  622 WDCSWSP--DEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIV  694 (764)
T ss_pred             EEcccCc--ccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEE
Confidence            9999999  6666     999999999 99944333    21  456889999999998742 2    566777555 88


Q ss_pred             EEe
Q 011368          484 FHY  486 (487)
Q Consensus       484 i~~  486 (487)
                      +|+
T Consensus       695 l~~  697 (764)
T KOG1063|consen  695 LWR  697 (764)
T ss_pred             EEe
Confidence            885

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.5e-27  Score=205.92  Aligned_cols=241  Identities=19%  Similarity=0.274  Sum_probs=195.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .+.|+++.|-.||++||+|+..|.|+|+|..+...                           +..+++|+          
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i---------------------------LR~~~ah~----------  110 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI---------------------------LRQLYAHQ----------  110 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH---------------------------HHHHhhcc----------
Confidence            56799999999999999999999999999544221                           46688999          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .+|..+.|+| .++..|++|+.|+.+++||+.+......                                       
T Consensus       111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~---------------------------------------  148 (487)
T KOG0310|consen  111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAE---------------------------------------  148 (487)
T ss_pred             --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEE---------------------------------------
Confidence              9999999986 5678889999999999999998764211                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                              +.+|++.|+|.+|+|- +.++++| .||.|++||++.....+..        -.|..+|..+.+-|.| ..|
T Consensus       149 --------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------lnhg~pVe~vl~lpsg-s~i  211 (487)
T KOG0310|consen  149 --------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------LNHGCPVESVLALPSG-SLI  211 (487)
T ss_pred             --------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------ecCCCceeeEEEcCCC-CEE
Confidence                    4899999999999995 5577888 9999999999966433222        2588999999999998 888


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      ++++.. .+++||+-+|...   +..+.             .|...|+|+.+..++..|++++ |+.+++||+.+ .+.+
T Consensus       212 asAgGn-~vkVWDl~~G~ql---l~~~~-------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-~Kvv  273 (487)
T KOG0310|consen  212 ASAGGN-SVKVWDLTTGGQL---LTSMF-------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN-YKVV  273 (487)
T ss_pred             EEcCCC-eEEEEEecCCcee---hhhhh-------------cccceEEEEEeecCCceEeecccccceEEEEccc-eEEE
Confidence            888754 7999999966422   12222             2578999999999999999986 79999999765 7778


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..+......                .+++.+||++.++.|..||.+.+=+...+
T Consensus       274 ~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  274 HSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             Eeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence            777766543                49999999999999999998877655444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=8.3e-27  Score=193.76  Aligned_cols=296  Identities=14%  Similarity=0.169  Sum_probs=209.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeE----eeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK----IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      +++.+-+|  ++||.++++|+.|..|+|.|++.-..+.    ......                                
T Consensus       113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--------------------------------  158 (430)
T KOG0640|consen  113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--------------------------------  158 (430)
T ss_pred             cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc--------------------------------
Confidence            88999999  6899999999999999999997421111    000000                                


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                       +...++...+..|.+.|+++.|+|....|++| .|++|+++|+.+......      .+...-...|.++.|+|.| .+
T Consensus       159 -qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA------~K~~qd~~~vrsiSfHPsG-ef  230 (430)
T KOG0640|consen  159 -QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA------FKVFQDTEPVRSISFHPSG-EF  230 (430)
T ss_pred             -ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH------HHHhhccceeeeEeecCCC-ce
Confidence             00112222248999999999999999999999 999999999985432110      1122234679999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      |++|..-..+++||+.+-+.       |-.       ...-.+|.+.|+++.+++.|++.++++ ||.|++||--+ +++
T Consensus       231 llvgTdHp~~rlYdv~T~Qc-------fvs-------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rC  295 (430)
T KOG0640|consen  231 LLVGTDHPTLRLYDVNTYQC-------FVS-------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS-NRC  295 (430)
T ss_pred             EEEecCCCceeEEeccceeE-------eee-------cCcccccccceeEEEecCCccEEEEeccCCcEEeecccc-HHH
Confidence            99999999999999998643       222       011256789999999999999999997 69999999876 888


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc-----CCccccceEe
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQ  422 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~  422 (487)
                      +.++....+..             .|.+..|..+|+||++.+.|..+++|++.++... ++..+-     ...-++..|.
T Consensus       296 v~t~~~AH~gs-------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFN  361 (430)
T KOG0640|consen  296 VRTIGNAHGGS-------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML-KEYTGAGTTGRQKHRTQAVFN  361 (430)
T ss_pred             HHHHHhhcCCc-------------eeeeEEEccCCeEEeecCCcceeeeeeecCCceE-EEEecCCcccchhhhhhhhhc
Confidence            88886433321             2368999999999999999999999999998553 333322     1111223333


Q ss_pred             eCCccccccccceeeecccce-ecCCC--CC-ccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          423 AAPRARRSSLSNLTRGLYRQA-HENSS--SG-HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~-~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      -. ...+     |.--...+. .-|+.  .. ......+|.+.+..+.-||.++.+.++++|. ..+|+
T Consensus       362 ht-EdyV-----l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  362 HT-EDYV-----LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             Cc-cceE-----EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            22 1111     222222233 55622  21 2223458999999999999999999999875 66665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-26  Score=211.23  Aligned_cols=271  Identities=18%  Similarity=0.268  Sum_probs=205.4

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      .+-++|+ ..+.||+|. ...|.+|+..+++..                           ....-++            +
T Consensus       180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~------------~  218 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE------------E  218 (484)
T ss_pred             hhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC------------C
Confidence            4456788 455677775 357999998877531                           1122224            7


Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .|+++.|  +++|.+|++|..+|.|.|||..+.+....                                          
T Consensus       219 ~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~------------------------------------------  254 (484)
T KOG0305|consen  219 LVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT------------------------------------------  254 (484)
T ss_pred             ceEEEEE--CCCCCEEEEeecCCeEEEEehhhcccccc------------------------------------------
Confidence            8999999  68999999999999999999987764433                                          


Q ss_pred             eeeeeccc-CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          195 ATKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       195 ~~~~~~~~-~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                           +.+ |...|-+++|+  +..+.+| .|+.|..+|++.......       .+.+|...|..++|++++ .++|+|
T Consensus       255 -----~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~qeVCgLkws~d~-~~lASG  319 (484)
T KOG0305|consen  255 -----LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHRQEVCGLKWSPDG-NQLASG  319 (484)
T ss_pred             -----ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhcccceeeeeEECCCC-CeeccC
Confidence                 245 99999999998  6788888 999999999996655443       367899999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe---CCeEEEEeCCCCCcee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD---YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~---d~~i~iwd~~~~~~~~  348 (487)
                      +.|+.+.|||.......    ..+..             |.+.|.+++|+|- ..+||+|+   |+.|++||..+ +..+
T Consensus       320 gnDN~~~Iwd~~~~~p~----~~~~~-------------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i  381 (484)
T KOG0305|consen  320 GNDNVVFIWDGLSPEPK----FTFTE-------------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARI  381 (484)
T ss_pred             CCccceEeccCCCcccc----EEEec-------------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEe
Confidence            99999999999554432    44444             5899999999995 55777763   69999999987 7777


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      ..+.....                |.++.|++..+.|+++.  .++.|.||+..+. .....+                 
T Consensus       382 ~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l-----------------  427 (484)
T KOG0305|consen  382 DSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL-----------------  427 (484)
T ss_pred             cccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-----------------
Confidence            66655443                25999999987777653  4678999999874 223333                 


Q ss_pred             cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                                                   .+|...|..++++|||..+++|+ +..+.+|+
T Consensus       428 -----------------------------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  428 -----------------------------LGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             -----------------------------cCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence                                         45555677777777777777666 44466665

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.3e-27  Score=208.87  Aligned_cols=224  Identities=14%  Similarity=0.205  Sum_probs=168.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.++++  .|.|..|++|+.|.+|++||+..-....                                          
T Consensus       168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------------------------  203 (641)
T KOG0772|consen  168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASM------------------------------------------  203 (641)
T ss_pred             eEEEEeee--cCCCceeeeccccceEEEEecccccccc------------------------------------------
Confidence            88999999  6889999999999999999998643211                                          


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC-----CCCCCCCCCcEEEEEEecCCCC
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-----PSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                      ...+.+.......|++++|++.|..|++. .....+++|.. +....+.....     ....++|...++|.+|+|....
T Consensus       204 ~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~  282 (641)
T KOG0772|consen  204 RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE  282 (641)
T ss_pred             hhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCccc
Confidence            11122235667789999999999988887 88899999988 55554443211     1245789999999999999888


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC-
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS-  345 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~-  345 (487)
                      .+++++.||++||||+...+..   .+++.....        .+-.-.++.++|+|||++||+| .||.|.+|+..... 
T Consensus       283 ~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~~--------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v  351 (641)
T KOG0772|consen  283 EFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKPA--------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV  351 (641)
T ss_pred             ceEEecCCCcEEEEecCCchhh---eeEEeeccC--------CCcccCceeeecCCCcchhhhcccCCceeeeecCCccc
Confidence            9999999999999999876532   234433111        1224578999999999999987 46999999975421 


Q ss_pred             ce-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          346 TP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       346 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      ++ ...-.+|....             +++++.||+||++|++-+.|+++++||+++.++.+
T Consensus       352 ~p~~~vk~AH~~g~-------------~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL  400 (641)
T KOG0772|consen  352 RPVMKVKDAHLPGQ-------------DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL  400 (641)
T ss_pred             ccceEeeeccCCCC-------------ceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence            22 23334555421             33799999999999999999999999999875543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5e-25  Score=175.20  Aligned_cols=309  Identities=19%  Similarity=0.281  Sum_probs=216.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      +..++.|.+++|+|.|.+.|.|+...+.+|-....-..+      |.     .. .....|+....+.-+.|.       
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~------r~-----~h-ea~~~pp~v~~kr~khhk-------   89 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL------RH-----AH-EAAKQPPSVLCKRNKHHK-------   89 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc------cc-----cc-ccccCCCeEEeeeccccC-------
Confidence            445788999999999999999999999998765432110      00     00 112233333444455666       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe----eecCCCCceeeeecc--cccc-ccccccCCCC
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----KEMDHFPFVSSENTL--LAEK-NFMNEHNPPS  181 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~  181 (487)
                           +.|.|.+|  +|+|+++++|+.|++|++..++.......    .-......+..+.|.  +..+ .++++.. ..
T Consensus        90 -----gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-ag  161 (350)
T KOG0641|consen   90 -----GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AG  161 (350)
T ss_pred             -----ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CC
Confidence                 99999999  68999999999999999987765432211    111122233444444  2333 3333333 33


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                      .-.++......++....+ .+|.+.|.++ ++-++-++++| .|.+|++||++ -..++++++.....-.-..+.|.+++
T Consensus       162 dc~iy~tdc~~g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             cceEEEeecCCCCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCcccceeEEEE
Confidence            334444445556666665 8999999876 34468899999 99999999999 45566665432111111236799999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  339 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iw  339 (487)
                      ..|.| .+|++|-.|....+||++.++++    +.|..             |...|.++.|+|...||++|++ ..|++-
T Consensus       239 vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~p-------------hsadir~vrfsp~a~yllt~syd~~iklt  300 (350)
T KOG0641|consen  239 VDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHP-------------HSADIRCVRFSPGAHYLLTCSYDMKIKLT  300 (350)
T ss_pred             ECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCC-------------CccceeEEEeCCCceEEEEecccceEEEe
Confidence            99999 99999999999999999999876    66666             4789999999999999999974 999999


Q ss_pred             eCCCC---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          340 DIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       340 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      |++-+   .-++.....|....               ..+.|+|..--+++.+.|.++.+|-+.
T Consensus       301 dlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence            98632   12233344455432               378999998889999999999999764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.1e-28  Score=202.72  Aligned_cols=283  Identities=19%  Similarity=0.240  Sum_probs=222.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.|..|  +|||++|++|+.||.|.+||..+|++.+..+++....                                 
T Consensus       214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~---------------------------------  258 (508)
T KOG0275|consen  214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN---------------------------------  258 (508)
T ss_pred             cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhcc---------------------------------
Confidence            66788999  6899999999999999999999998776654443221                                 


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~  271 (487)
                            +--+...|.|++|+.|..++++| .||.|++|.+.+ +.|++       .+. +|...|+|+.|+.++ ..+++
T Consensus       259 ------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~ClR-------rFdrAHtkGvt~l~FSrD~-SqiLS  323 (508)
T KOG0275|consen  259 ------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCLR-------RFDRAHTKGVTCLSFSRDN-SQILS  323 (508)
T ss_pred             ------eeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHHH-------HhhhhhccCeeEEEEccCc-chhhc
Confidence                  24678999999999999999999 999999999995 55553       233 799999999999999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      ++.|.++|+.-+.+|+.+    +.|.+             |.+.|+...|++||.++++++ ||+|++|+.++ ..++.+
T Consensus       324 ~sfD~tvRiHGlKSGK~L----KEfrG-------------HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~T  385 (508)
T KOG0275|consen  324 ASFDQTVRIHGLKSGKCL----KEFRG-------------HSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLST  385 (508)
T ss_pred             ccccceEEEeccccchhH----HHhcC-------------ccccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhh
Confidence            999999999999999876    66666             588999999999999999985 79999999998 888888


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC---ccccceEeeCCc
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---ENRKPILQAAPR  426 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~  426 (487)
                      ++......             .|.++..-| +...++++...++|+|-++..  ..+..+...+.   .-...+.+|  .
T Consensus       386 fk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSp--k  448 (508)
T KOG0275|consen  386 FKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSP--K  448 (508)
T ss_pred             ccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecC--C
Confidence            87654322             124665555 567888899999999999863  34454443322   222334444  5


Q ss_pred             cccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          427 ARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      |.+     +-..+.|+. ..+  ..+.+...+.-|++.|..++-||-.+.||+=+.|+ +.+|.
T Consensus       449 Gew-----iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEW-----IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcE-----EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            555     555566666 555  55667777888999999999999999999999887 56664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=3.9e-26  Score=209.05  Aligned_cols=405  Identities=15%  Similarity=0.167  Sum_probs=261.8

Q ss_pred             cccccCcEEEEEEcCCCC---EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~---~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      .-+|..+|+|+.|-|+.+   ++++|+.|+.|.+|.++..                         ....+.++++|.   
T Consensus        50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~-------------------------~~~~i~~~~g~~---  101 (764)
T KOG1063|consen   50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE-------------------------YLIKIYTIQGHC---  101 (764)
T ss_pred             ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh-------------------------heEEEEeecCcc---
Confidence            446999999999999887   8999999999999999833                         234567788887   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCC---CCceeeeeccccccccccccCCC
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDH---FPFVSSENTLLAEKNFMNEHNPP  180 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  180 (487)
                                 +.++++.   +...+.+ .+.|+++.+||.+..+........+   ..-..|++..+..+.++.+.+..
T Consensus       102 -----------~~~~cv~---a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs  167 (764)
T KOG1063|consen  102 -----------KECVCVV---ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS  167 (764)
T ss_pred             -----------eeEEEEE---eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc
Confidence                       4455552   2223333 3799999999996555222111111   11122555555444554444444


Q ss_pred             Ccceeeeeeeeccceee-eecccCCCceeEEEeCCC---CCEEEEe-cCCeEEEEEccCCCc------------------
Q 011368          181 SFAHGYHLEWTENMATK-VYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQ------------------  237 (487)
Q Consensus       181 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~s~~---~~~l~s~-~d~~i~iwd~~~~~~------------------  237 (487)
                      .........- .....+ .-+.+|.+.|.+++|...   .-+++++ .|..|+||.+.-.+.                  
T Consensus       168 ~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~  246 (764)
T KOG1063|consen  168 KFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV  246 (764)
T ss_pred             ceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence            3333222221 222222 225899999999999764   3477788 999999998864331                  


Q ss_pred             --eeEEee--cCC-CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcc-----------ccc----------
Q 011368          238 --CFNIVD--MKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL-----------CDH----------  291 (487)
Q Consensus       238 --~~~~~~--~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~----------  291 (487)
                        +...++  +.. .-+.+|.+.|+++.|+|.+ ..|++++.|.++.+|......-           -..          
T Consensus       247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~  325 (764)
T KOG1063|consen  247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS  325 (764)
T ss_pred             eeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence              110000  100 2345999999999999999 8999999999999997765310           000          


Q ss_pred             -------------cceeecc-cccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC--------------
Q 011368          292 -------------SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR--------------  342 (487)
Q Consensus       292 -------------~~~~~~~-h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~--------------  342 (487)
                                   -.+.+.. ....-.......||...|.+++|+|.|+||++.+ |.+-|+|---              
T Consensus       326 ~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi  405 (764)
T KOG1063|consen  326 PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI  405 (764)
T ss_pred             CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc
Confidence                         0001110 0000011233578999999999999999999864 6666665321              


Q ss_pred             ------C--------------CCceeeeeeccccc-----------------------cc--------------------
Q 011368          343 ------M--------------DSTPVATFKIHEHL-----------------------RP--------------------  359 (487)
Q Consensus       343 ------~--------------~~~~~~~~~~~~~~-----------------------~~--------------------  359 (487)
                            .              +.+.++.+..+...                       ++                    
T Consensus       406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~  485 (764)
T KOG1063|consen  406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA  485 (764)
T ss_pred             ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence                  0              00111111111000                       00                    


Q ss_pred             ----------ccc---------------------cccCCCCcceeeEEEEcCCCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368          360 ----------KLC---------------------DLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS  403 (487)
Q Consensus       360 ----------~~~---------------------~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----g~i~iwd~~~~~  403 (487)
                                ..+                     .+|+.+  +.|++++.+|+|+++|+++..     ..|++|+..+-.
T Consensus       486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG--yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~  563 (764)
T KOG1063|consen  486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG--YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL  563 (764)
T ss_pred             ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc--eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh
Confidence                      000                     022211  236899999999999998865     359999998874


Q ss_pred             ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc------cccccCCCeEEEEEcCCCCEEEE
Q 011368          404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE------LSYNLSSKLLHLAWHPTTNLIAC  476 (487)
Q Consensus       404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~------~~~~~~~~v~~~~~spd~~~la~  476 (487)
                       ..+.+.+|.-.|+.++|+|  ++++     |++.++|.. .+|...+...      ....|..-|.+..|+||+.++|+
T Consensus       564 -~~~~L~~HsLTVT~l~FSp--dg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT  635 (764)
T KOG1063|consen  564 -QVQELEGHSLTVTRLAFSP--DGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT  635 (764)
T ss_pred             -hhheecccceEEEEEEECC--CCcE-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence             4668999999999999999  8888     999999999 9994432221      24468888999999999999999


Q ss_pred             ecCC-eEEEEe
Q 011368          477 ANGN-SLFFHY  486 (487)
Q Consensus       477 ~s~~-~~~i~~  486 (487)
                      +|-| .+.+|.
T Consensus       636 aSRDK~VkVW~  646 (764)
T KOG1063|consen  636 ASRDKKVKVWE  646 (764)
T ss_pred             ecCCceEEEEe
Confidence            9955 588885

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=219.98  Aligned_cols=270  Identities=16%  Similarity=0.263  Sum_probs=221.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |...+.|..|.  +.++++++.|++|++|+..++...                          ...+.||.         
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i--------------------------~~~l~GH~---------  249 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI--------------------------LTRLVGHF---------  249 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEE--------------------------EeeccCCC---------
Confidence            46678899998  568999999999999998877642                          34499999         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         +.|.++++.  ..+.++++|+.|.++++||..++++...                                      
T Consensus       250 ---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~--------------------------------------  286 (537)
T KOG0274|consen  250 ---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHS--------------------------------------  286 (537)
T ss_pred             ---CCceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEE--------------------------------------
Confidence               999999993  3578999999999999999999987765                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                               +.+|...|.++...  ...+++| .|.+|++|++. .+.++.+       +.+|.+.|.++..+  + .++
T Consensus       287 ---------l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~V~~v~~~--~-~~l  344 (537)
T KOG0274|consen  287 ---------LQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGPVNCVQLD--E-PLL  344 (537)
T ss_pred             ---------ecCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------eccccccEEEEEec--C-CEE
Confidence                     47999999999875  4577778 99999999999 5666655       45699999999998  5 799


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC-ce
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS-TP  347 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~-~~  347 (487)
                      ++|+.|+.|++||..+++.+    +.+.+             |...|.++.+.+. ..+++|+ |+.|++||+++ . ++
T Consensus       345 vsgs~d~~v~VW~~~~~~cl----~sl~g-------------H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~-~~~c  405 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGKCL----KSLSG-------------HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT-KRKC  405 (537)
T ss_pred             EEEecCceEEEEEhhhceee----eeecC-------------CcceEEEEEecCc-ceEEeeeeccceEeecCCc-hhhh
Confidence            99999999999999988765    66666             5899999988765 7888885 79999999997 6 89


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-cCCccccceEeeCCc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPR  426 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  426 (487)
                      +..+.+|...+                 -.+...+++|++++.|++|++||.+++ ....++++ |...+..+...   +
T Consensus       406 ~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~~l~~~---~  464 (537)
T KOG0274|consen  406 IHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVSALALG---K  464 (537)
T ss_pred             hhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccC-ceeeeeccCCcccEEEeecC---c
Confidence            99999998753                 223346789999999999999999988 55777777 66777776665   1


Q ss_pred             cccccccceeeecccce-ecCCC
Q 011368          427 ARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      ..      ++.++.++. ++|+.
T Consensus       465 ~~------il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  465 EE------ILCSSDDGSVKLWDL  481 (537)
T ss_pred             ce------EEEEecCCeeEEEec
Confidence            11      677888888 99933

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=5.1e-26  Score=216.06  Aligned_cols=220  Identities=13%  Similarity=0.132  Sum_probs=166.2

Q ss_pred             cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..+|.+.|++++|+| ++++||+|+.|++|+|||+.++...                    ....+.+..+.+|.     
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~-----  125 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT-----  125 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC-----
Confidence            567999999999999 8899999999999999998765321                    00123456788998     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|+|. .+.+|++++.|++|+|||+.+++....                                  
T Consensus       126 -------~~V~~l~f~P~-~~~iLaSgs~DgtVrIWDl~tg~~~~~----------------------------------  163 (493)
T PTZ00421        126 -------KKVGIVSFHPS-AMNVLASAGADMVVNVWDVERGKAVEV----------------------------------  163 (493)
T ss_pred             -------CcEEEEEeCcC-CCCEEEEEeCCCEEEEEECCCCeEEEE----------------------------------
Confidence                   89999999642 246899999999999999998764432                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc-EEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~  264 (487)
                                   +.+|...|.+++|+|++++|+++ .|+.|++||++++. .+.       .+.+|... +..+.|.++
T Consensus       164 -------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~-------tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        164 -------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVS-------SVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             -------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEE-------EEecCCCCcceEEEEcCC
Confidence                         36899999999999999999999 99999999999544 332       23566553 456788988


Q ss_pred             CCCEEEEEe----CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368          265 YCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL  338 (487)
Q Consensus       265 ~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i  338 (487)
                      + ..+++++    .|+.|++||+++....   ......+            +...+....|++++.+|++++  |+.|++
T Consensus       223 ~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d------------~~~~~~~~~~d~d~~~L~lggkgDg~Iri  286 (493)
T PTZ00421        223 K-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLD------------QSSALFIPFFDEDTNLLYIGSKGEGNIRC  286 (493)
T ss_pred             C-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccC------------CCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence            7 6666654    4789999999875422   1222211            124566678999999888763  799999


Q ss_pred             EeCCCCCceeeeee
Q 011368          339 WDIRMDSTPVATFK  352 (487)
Q Consensus       339 wd~~~~~~~~~~~~  352 (487)
                      ||+.. +.++....
T Consensus       287 wdl~~-~~~~~~~~  299 (493)
T PTZ00421        287 FELMN-ERLTFCSS  299 (493)
T ss_pred             EEeeC-CceEEEee
Confidence            99986 66665543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=191.49  Aligned_cols=253  Identities=17%  Similarity=0.276  Sum_probs=195.2

Q ss_pred             cchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCC
Q 011368           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (487)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (487)
                      ....|.+.+.|-      ...|..+|+|+|.+  +.|+|+|+.|-+|+|||+....+                       
T Consensus        27 ~s~~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------------   75 (362)
T KOG0294|consen   27 DSVKPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------------   75 (362)
T ss_pred             cccceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------
Confidence            445566666665      34689999999986  78999999999999999987665                       


Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                          +..+-.|.            +.|+++.|.+......|++|+.||.|.+|+...-.+...                 
T Consensus        76 ----lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s-----------------  122 (362)
T KOG0294|consen   76 ----LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS-----------------  122 (362)
T ss_pred             ----hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee-----------------
Confidence                36677788            999999996533334899999999999999987654443                 


Q ss_pred             ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368          170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  248 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~  248 (487)
                                                    +.+|.+.|+.++.+|.+++.++- .|+.+++||+-.+..... .+     
T Consensus       123 ------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-~~-----  166 (362)
T KOG0294|consen  123 ------------------------------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-LN-----  166 (362)
T ss_pred             ------------------------------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee-ec-----
Confidence                                          48999999999999999988876 999999999985554332 11     


Q ss_pred             CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                      +   ....+.+.|+|.| .+++.++.+ .|-+|.+.+..+.    .....              ...+.++.|-..+ +|
T Consensus       167 L---~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r~l~~~~l~~~-~L  222 (362)
T KOG0294|consen  167 L---KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKRILCATFLDGS-EL  222 (362)
T ss_pred             c---CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------cccceeeeecCCc-eE
Confidence            1   1223449999999 888888776 4889998876533    22222              2356777776544 55


Q ss_pred             EEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEE--EcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++| +++.|.+||... ..+...+.+|...+.               ++.  -.|++.+|+++|.||.|+|||+...
T Consensus       223 ~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  223 LVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            555 569999999986 889999999998663               444  3567899999999999999999875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.7e-25  Score=202.34  Aligned_cols=326  Identities=14%  Similarity=0.146  Sum_probs=241.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+|.|+||+.+.+.||.+-.||.|.||++...=                          -....+.+++          
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w--------------------------~~~~vi~g~~----------   68 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW--------------------------FLEPVIHGPE----------   68 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCc--------------------------eeeEEEecCC----------
Confidence            4579999999999999999999999999986542                          2346677766          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                       +..|.+++|+   ++..|++.+.+|.|.-||+.+.+.+..                                       
T Consensus        69 -drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~---------------------------------------  105 (691)
T KOG2048|consen   69 -DRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYN---------------------------------------  105 (691)
T ss_pred             -CCceeeEEEc---cCCeEEeecCCceEEEEecccCceeEE---------------------------------------
Confidence             4899999994   567899999999999999999876654                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                              .....+.|++++.+|.+..++.| +||.++..+...+.-....      .+....+.|.+++|+|++ ..++
T Consensus       106 --------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRvLslsw~~~~-~~i~  170 (691)
T KOG2048|consen  106 --------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRVLSLSWNPTG-TKIA  170 (691)
T ss_pred             --------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceEEEEEecCCc-cEEE
Confidence                    25667889999999999999998 9997777777733322222      344556889999999999 8899


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~  349 (487)
                      .|+.||.|++||...+.........+..    ...     +...-|+++.|-.++ .|++|+. |+|.+||... +..+.
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~----l~k-----~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~-gTLiq  239 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDR----LSK-----REPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIF-GTLIQ  239 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccc----ccc-----CCceEEEEEEEeecC-cEEEecCCceEEEEcccC-cchhh
Confidence            9999999999999988654210011111    000     013467888888665 6788865 9999999987 88899


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc---eeEEEeccCCccccceEeeCCc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+..|..-+               .+++.++++.++++++.|+.|.-|...+.+.   .......|...+++++..+.  
T Consensus       240 S~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  240 SHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             hhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence            998888743               6999999999999999999999999987754   23344567777777766652  


Q ss_pred             cccccccceeeecccce-------------------------------------------ecCCCCCccc----------
Q 011368          427 ARRSSLSNLTRGLYRQA-------------------------------------------HENSSSGHHE----------  453 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-------------------------------------------~~w~~~~~~~----------  453 (487)
                        .     +.+|++|..                                           .+|..+....          
T Consensus       303 --~-----l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll  375 (691)
T KOG2048|consen  303 --A-----LISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL  375 (691)
T ss_pred             --e-----EEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence              1     444444332                                           2232221100          


Q ss_pred             -cccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          454 -LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       454 -~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                       ....-...|.+.+.||||++||.++-..++||.
T Consensus       376 kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~  409 (691)
T KOG2048|consen  376 KLFTKEKENISCAAISPDGNLIAISTVSRTKIYR  409 (691)
T ss_pred             eeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence             111233468899999999999999977777775

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=6.4e-26  Score=216.21  Aligned_cols=238  Identities=15%  Similarity=0.196  Sum_probs=168.8

Q ss_pred             cccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          200 PHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       200 ~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      +.+|.+.|.+++|+|+ +++|++| .|++|++||+.........+......+.+|...|.+++|+|++..+|++++.|+.
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            3799999999999996 7899999 9999999999854321111100112357899999999999998345678999999


Q ss_pred             EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccc
Q 011368          278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      |+|||+++++..    ..+..              ...|.+++|+|+|.+|++++ |+.|+|||+++ +..+..+.+|.+
T Consensus       150 IrIWDl~tg~~~----~~i~~--------------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g  210 (568)
T PTZ00420        150 VNIWDIENEKRA----FQINM--------------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDG  210 (568)
T ss_pred             EEEEECCCCcEE----EEEec--------------CCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccC
Confidence            999999987643    22222              35799999999999999875 69999999997 788888988876


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC----cEEEEEeCCCCceeEEEeccCCccccceEee-CCcccccc
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGKNENRKPILQA-APRARRSS  431 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~  431 (487)
                      .+..          ..++...|++++.+|++++.|+    .|+|||+++....+.....+ .....+.... ..++.+  
T Consensus       211 ~~~s----------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l--  277 (568)
T PTZ00420        211 GKNT----------KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLI--  277 (568)
T ss_pred             Ccee----------EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCE--
Confidence            4310          0112345678999999988774    79999999654444443322 2222332222 224666  


Q ss_pred             ccceeeecccce-ecCCCCCc-cc--cccccCCCeEEEEEcCCCC
Q 011368          432 LSNLTRGLYRQA-HENSSSGH-HE--LSYNLSSKLLHLAWHPTTN  472 (487)
Q Consensus       432 ~~~l~~g~~~~~-~~w~~~~~-~~--~~~~~~~~v~~~~~spd~~  472 (487)
                         +++|..|+. ++|..... ..  ..+.+..++..++|.|+-.
T Consensus       278 ---~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        278 ---YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             ---EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence               889999999 99944222 11  2234567888999999754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4e-27  Score=213.98  Aligned_cols=259  Identities=20%  Similarity=0.330  Sum_probs=208.7

Q ss_pred             cccCcEE---EEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           30 QDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        30 ~h~~~V~---~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      +|...|.   .+..+. .++||++|++||.|++|++.....                     .|+..+...++.|.    
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------------~~s~~~~asme~Hs----   73 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------------EPSTPYIASMEHHS----   73 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccC---------------------CcccchhhhhhhhH----
Confidence            5666676   566664 567899999999999999865432                     12333567788898    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              +.|+.+..+  .+++-|++++.|-+|++|+...+...                                   
T Consensus        74 --------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~-----------------------------------  108 (735)
T KOG0308|consen   74 --------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTF-----------------------------------  108 (735)
T ss_pred             --------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcch-----------------------------------
Confidence                    889999985  67889999999999999999876411                                   


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEe-CCCCCEEEEe-cCCeEEEEEccCCCc-eeEEe-ecCCCCCC-CCCCcEEEEE
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIV-DMKPSNMD-DLTEVITSAE  260 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~-~~~~~v~~v~  260 (487)
                               |..+ +..|.+.|.|++. .++..++|+| -|+.|.+||++++.. .+... ......+. ++...|++++
T Consensus       109 ---------c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen  109 ---------CMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             ---------hHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence                     2222 3789999999999 7888899998 999999999995422 11111 01112334 7889999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW  339 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iw  339 (487)
                      .++.| ..|++|+.++-|++||.++.+.+    ..+.             +|...|..+..++||..++++ +||+|++|
T Consensus       179 ~N~t~-t~ivsGgtek~lr~wDprt~~ki----mkLr-------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  179 MNQTG-TIIVSGGTEKDLRLWDPRTCKKI----MKLR-------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             cCCcc-eEEEecCcccceEEeccccccce----eeee-------------ccccceEEEEEcCCCCeEeecCCCceEEee
Confidence            99999 99999999999999999997643    3333             468999999999999999987 57999999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      |+.. .+++.++..|...+               +++..+|+=.++++|+.||.|+.=|+.+.
T Consensus       241 dLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  241 DLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9986 89999999999854               79999999999999999999999999986

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=4.3e-25  Score=195.08  Aligned_cols=383  Identities=11%  Similarity=0.094  Sum_probs=259.7

Q ss_pred             CCCCccccccCcEEEEEEcCCCCEEEEEecCC--------cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE
Q 011368           23 RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (487)
Q Consensus        23 ~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (487)
                      ........|++.|.|++.+||.-.+++|...|        .++|||..+...                           +
T Consensus        95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L  147 (626)
T KOG2106|consen   95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------L  147 (626)
T ss_pred             hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------e
Confidence            34445678999999999999998899886555        489999654432                           2


Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEE--eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      ..+..-.            ..|.+++|++...|.+++..  +.+..+.+||...+......+ .....+....|++.+..
T Consensus       148 ~V~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~n  214 (626)
T KOG2106|consen  148 HVIGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPN  214 (626)
T ss_pred             eeecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-eccceEEEEEeccCCCc
Confidence            3333222            78999999987777777664  567789999998764332211 11233556778888888


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                      ++..++..-..+.....-...+...++-......|.|++|.++|.. ++| .+|.|.||+... .+..+.       ...
T Consensus       215 liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~-~~~~k~-------~~a  285 (626)
T KOG2106|consen  215 LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGT-NRISKQ-------VHA  285 (626)
T ss_pred             EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCC-ceEEeE-------eee
Confidence            7777766544333111111111111222233477999999999854 577 999999999873 333322       238


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc-------cce-eecccccc---------------cCcccc
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDAAES---------------HGSKSF  308 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~-~~~~h~~~---------------~~~~~~  308 (487)
                      |.+.|.++....+|  .|++|+.|+.|..||-.-.+....       .++ +.+++.+-               ......
T Consensus       286 H~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  286 HDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             cCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            99999999999998  566699999999998332211000       001 11111110               000011


Q ss_pred             ccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368          309 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       309 ~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  387 (487)
                      ..+|......++.+|+...+++++ |+.+++|+   +.+++.........                .++.|+|.| .+|.
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~----------------~~~~fhpsg-~va~  423 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPA----------------ECADFHPSG-VVAV  423 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc---CCceeEEEEecCce----------------eEeeccCcc-eEEE
Confidence            246788899999999988888765 79999999   25666555444332                389999999 9999


Q ss_pred             EcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC--CCccccc--cccCCCe
Q 011368          388 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS--YNLSSKL  462 (487)
Q Consensus       388 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~--~~~~~~v  462 (487)
                      |+..|...+.|.++.  ....++....+++.+.++|  +|.+     |+.|+.|+. .++..  .+.....  .-+-++|
T Consensus       424 Gt~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp--~G~~-----lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i  494 (626)
T KOG2106|consen  424 GTATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSP--DGAF-----LAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI  494 (626)
T ss_pred             eeccceEEEEecccc--eeEEEEecCCceEEEEEcC--CCCE-----EEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence            999999999999874  3445555588999999999  7777     999999999 88822  2222211  1223899


Q ss_pred             EEEEEcCCCCEEEEecCCeEEEE
Q 011368          463 LHLAWHPTTNLIACANGNSLFFH  485 (487)
Q Consensus       463 ~~~~~spd~~~la~~s~~~~~i~  485 (487)
                      +++.||+|+++|.+.+.|.-.+|
T Consensus       495 thLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  495 THLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             EEeeecCCCceEEeccCceEEEE
Confidence            99999999999999998875554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.5e-26  Score=202.07  Aligned_cols=267  Identities=15%  Similarity=0.234  Sum_probs=197.6

Q ss_pred             cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .+.|.+.|+.+..-|.. ..+|+++..+.|.|||.....-.                 .....+.++-..+.||+     
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-----------------~~~~~~~~Pdl~L~gH~-----  177 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-----------------PKASGECRPDLRLKGHE-----  177 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-----------------ccccccCCCceEEEeec-----
Confidence            36688999999999976 56677788999999998765431                 00111445567889998     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.=.+++|++. ....|++++.|++|.+||+........                                  
T Consensus       178 -------~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~----------------------------------  215 (422)
T KOG0264|consen  178 -------KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDK----------------------------------  215 (422)
T ss_pred             -------ccccccccccc-cceeEeeccCCCcEEEEeccccccCCc----------------------------------
Confidence                   44577999763 445789999999999999986543200                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                            ....+..+.+|...|..++|++- ..+|+++ +|+.+.|||+++.....      .....+|.+.|.|++|+|.
T Consensus       216 ------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------~~~~~ah~~~vn~~~fnp~  283 (422)
T KOG0264|consen  216 ------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------SHSVKAHSAEVNCVAFNPF  283 (422)
T ss_pred             ------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------cccccccCCceeEEEeCCC
Confidence                  00122335899999999999984 5566666 99999999999521111      2356789999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE-EE-EeCCeEEEEeCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LS-RDYMNLKLWDIR  342 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s-~~d~~i~iwd~~  342 (487)
                      +..+||+|+.|++|.+||+|+-..   .+..+.+             |...|.+|.|+|...-+ ++ |.|+.+.+||+.
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~-------------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNK---PLHTFEG-------------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             CCceEEeccCCCcEEEeechhccc---CceeccC-------------CCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            878999999999999999998543   3355555             58999999999987654 44 457999999996


Q ss_pred             CCCce-------------eeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEEEcCCCcEEEEEeCC
Q 011368          343 MDSTP-------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGV  401 (487)
Q Consensus       343 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~~dg~i~iwd~~~  401 (487)
                      .-+..             +..-.+|...+               ..+.|+|+..+ |++.+.|+.+.||++..
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            53322             23334454433               58999997664 67889999999999873

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=9e-27  Score=203.49  Aligned_cols=285  Identities=16%  Similarity=0.251  Sum_probs=202.9

Q ss_pred             CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCC
Q 011368          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (487)
Q Consensus       100 h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      +.+.++....+.+++.|+.+++.| .+...+++.+..+.|.|||.....-.........+                    
T Consensus       111 ~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~P--------------------  169 (422)
T KOG0264|consen  111 VSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRP--------------------  169 (422)
T ss_pred             cccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCC--------------------
Confidence            333444445556669999999987 56678888899999999998764322211001111                    


Q ss_pred             CCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          180 PSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                                      - ..+.+|...-++++|++. .-.++++ .|++|++||+......-..+ .+...+.+|...|.
T Consensus       170 ----------------d-l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-~p~~~~~~h~~~Ve  231 (422)
T KOG0264|consen  170 ----------------D-LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-DPKTIFSGHEDVVE  231 (422)
T ss_pred             ----------------c-eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-cceEEeecCCccee
Confidence                            0 114788888889999984 3356666 99999999998654421111 11134678999999


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEe-CCe
Q 011368          258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMN  335 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~-d~~  335 (487)
                      .++|++....+|++++.|+.+.|||+|++.  ....+...             +|.+.|.+++|+|-+.+ ||+|+ |++
T Consensus       232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~-------------ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVK-------------AHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             hhhccccchhhheeecCCCeEEEEEcCCCC--CCCccccc-------------ccCCceeEEEeCCCCCceEEeccCCCc
Confidence            999999887899999999999999999631  11113333             46899999999997655 55665 799


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      |++||+|....++..+.+|...+               +.+.|||. ...||+++.|+.+.|||+..-+.......+.  
T Consensus       297 V~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~--  359 (422)
T KOG0264|consen  297 VALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE--  359 (422)
T ss_pred             EEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc--
Confidence            99999998888999999999865               69999995 5678999999999999998643321111111  


Q ss_pred             ccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEE-EEecCCe-EEEEe
Q 011368          415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACANGNS-LFFHY  486 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~l-a~~s~~~-~~i~~  486 (487)
                                 ++..                    +++....+|...|.++.|+|..+++ +++++|+ +-||+
T Consensus       360 -----------dgpp--------------------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  360 -----------DGPP--------------------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             -----------cCCc--------------------ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence                       1111                    2344455888899999999999874 5666554 77886

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.8e-27  Score=191.85  Aligned_cols=244  Identities=15%  Similarity=0.216  Sum_probs=199.2

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      -.+|.++|+...++.+-...|+++.|-+-+|||.-++..+                                        
T Consensus        55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel----------------------------------------   94 (334)
T KOG0278|consen   55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL----------------------------------------   94 (334)
T ss_pred             eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh----------------------------------------
Confidence            4569999999999999999999999999999998888652                                        


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      .++++..-|.+++|  +.|.++|++|+.++.+||+|++..+...                                    
T Consensus        95 hsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App------------------------------------  136 (334)
T KOG0278|consen   95 HSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPP------------------------------------  136 (334)
T ss_pred             hhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCc------------------------------------
Confidence            22223367999999  6889999999999999999998654221                                    


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                               .. +.+|.+.|..+.|....+.|+++ +|++|++||.+++ ..++.+        ..+..|+++..+++| 
T Consensus       137 ---------~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg-t~v~sL--------~~~s~VtSlEvs~dG-  196 (334)
T KOG0278|consen  137 ---------KE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG-TEVQSL--------EFNSPVTSLEVSQDG-  196 (334)
T ss_pred             ---------hh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC-cEEEEE--------ecCCCCcceeeccCC-
Confidence                     11 38999999999999988999998 9999999999954 445443        234678999999998 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+| +....+.|.+||..+-.++    +.++.              ...|.+..++|+...+++|. |..++.||..+ +
T Consensus       197 ~il-Tia~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-g  256 (334)
T KOG0278|consen  197 RIL-TIAYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-G  256 (334)
T ss_pred             CEE-EEecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEEecCcceEEEEEeccC-C
Confidence            554 5556678999999987655    55555              46789999999998888875 69999999998 6


Q ss_pred             ceeeee-ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          346 TPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ..+..+ ++|.+++               .++.|+|||...++||.||+|+||....++.
T Consensus       257 eEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  257 EEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            666665 7888765               6999999999999999999999999987643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=7.6e-26  Score=207.25  Aligned_cols=273  Identities=14%  Similarity=0.164  Sum_probs=215.4

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|..+++.+.. .++++++||++++|+-...+.                         .....+.+|.      
T Consensus        10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~-------------------------l~~~~~~~~~------   57 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY-------------------------LETHAFEGPK------   57 (745)
T ss_pred             eccCccchheeEecCCe-EEeecCCCCceeeeeccCccc-------------------------ccceecccCc------
Confidence            45688899999887654 789999999999999765543                         2234566676      


Q ss_pred             cccccccceeE-EEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          108 KSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       108 ~~~~~~~~I~~-v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                            +-|.. +++.+ .++..+++|+.|.+|.+|...+.....+                                  
T Consensus        58 ------g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~----------------------------------   96 (745)
T KOG0301|consen   58 ------GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYT----------------------------------   96 (745)
T ss_pred             ------ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhh----------------------------------
Confidence                  66766 88865 5666799999999999999988765544                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   +.+|...|.+++...++. +++| .|.++++|......          ..+++|+..|++++.-|.+
T Consensus        97 -------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~----------~~l~gH~asVWAv~~l~e~  152 (745)
T KOG0301|consen   97 -------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV----------YSLQGHTASVWAVASLPEN  152 (745)
T ss_pred             -------------hhccccceeeeecCCcCc-eEecccccceEEecchhhh----------cccCCcchheeeeeecCCC
Confidence                         589999999999888887 8888 99999999876222          2468999999999999985


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS  345 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~  345 (487)
                        .+++|+.|.+|++|.-  ++..    ++|.+             |..-|+.+++-+++.++-++.||.|++|++.  +
T Consensus       153 --~~vTgsaDKtIklWk~--~~~l----~tf~g-------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~--g  209 (745)
T KOG0301|consen  153 --TYVTGSADKTIKLWKG--GTLL----KTFSG-------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD--G  209 (745)
T ss_pred             --cEEeccCcceeeeccC--Cchh----hhhcc-------------chhheeeeEEecCCCeEeecCCceEEEEecc--C
Confidence              8999999999999975  3333    66776             4889999999999888877788999999993  8


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      ..+.++.+|...+               .++...++++.++++++|++++||+..   ++.+.+.-....++++.+-+. 
T Consensus       210 e~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~N-  270 (745)
T KOG0301|consen  210 EVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLN-  270 (745)
T ss_pred             ceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeC-
Confidence            8999999999865               588877888999999999999999976   556666555555555555542 


Q ss_pred             ccccccccceeeecccce-ecC
Q 011368          426 RARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                       +.      +++|+.||. ++|
T Consensus       271 -gD------Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  271 -GD------IVVGGSDGRVRVF  285 (745)
T ss_pred             -CC------EEEeccCceEEEE
Confidence             22      566666666 555

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.4e-26  Score=190.07  Aligned_cols=282  Identities=17%  Similarity=0.222  Sum_probs=208.6

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      +..+|.+.|+.++-......+.+++.|.+.+||.++++.+                           +.++.||.     
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---------------------------L~~Y~GH~-----  190 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC---------------------------LATYTGHT-----  190 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccc---------------------------eeeecccc-----
Confidence            5667999999999988888999999999999999998876                           58899999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe----eecCCCCceeeeeccccccccccccCCCCc
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                             +.|++|.|+  +.+.++++++.|++..||...-.-....    ..+..+.+.   ..+........+....+.
T Consensus       191 -------GSVNsikfh--~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~---e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  191 -------GSVNSIKFH--NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE---EHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             -------cceeeEEec--cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh---hcccccccccccccccCC
Confidence                   999999996  5788999999999999997421100000    000000000   000000000000000000


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                      -       ....++.. +.+|...|.+..|-..|+.++++ .|.+..+||+++ +..+.       .+.+|....+.++-
T Consensus       259 ~-------tiRvPl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt-ge~v~-------~LtGHd~ELtHcst  322 (481)
T KOG0300|consen  259 H-------TIRVPLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET-GEVVN-------ILTGHDSELTHCST  322 (481)
T ss_pred             c-------eeeeeeee-eeccccceEehhhhcCcceeeeeeccccceeeeecc-Cceec-------cccCcchhcccccc
Confidence            0       00112222 48999999999999999999999 999999999995 44544       46899999999999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEe
Q 011368          262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD  340 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd  340 (487)
                      +|.. .++++++.|.+.++||++..   ...+..|++             |...|+++.|.-+. .+++|+ |.+|++||
T Consensus       323 HptQ-rLVvTsSrDtTFRLWDFRea---I~sV~VFQG-------------HtdtVTS~vF~~dd-~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  323 HPTQ-RLVVTSSRDTTFRLWDFREA---IQSVAVFQG-------------HTDTVTSVVFNTDD-RVVSGSDDRTVKVWD  384 (481)
T ss_pred             CCcc-eEEEEeccCceeEeccchhh---cceeeeecc-------------cccceeEEEEecCC-ceeecCCCceEEEee
Confidence            9998 99999999999999999842   222345555             68999999999765 566775 59999999


Q ss_pred             CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++....++.+++.....                ..++.+..+..|+.--++..|++||++..
T Consensus       385 LrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  385 LRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             eccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCC
Confidence            99878888888766543                48899988889999999999999999754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-26  Score=186.65  Aligned_cols=248  Identities=14%  Similarity=0.113  Sum_probs=192.4

Q ss_pred             cccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--CCCCEEEEEeCCC
Q 011368          200 PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRG  276 (487)
Q Consensus       200 ~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg  276 (487)
                      -..|.+.|.++...--|+.|++| .|++|+|+.++.+++...+     .++.+|.++|+.++|..  .| .+||+++.||
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg   80 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDG   80 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence            36899999999888889999999 9999999999977653322     46889999999999974  67 9999999999


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEE-eCCeEEEEeCCCCC--ceeeee
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR-DYMNLKLWDIRMDS--TPVATF  351 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~-~d~~i~iwd~~~~~--~~~~~~  351 (487)
                      .|.||.-.+++-.  +...+             ..|...|++++|.|.+  -.|+++ +||.|.|.+.+..+  ..-...
T Consensus        81 kVIiWke~~g~w~--k~~e~-------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   81 KVIIWKEENGRWT--KAYEH-------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             eEEEEecCCCchh--hhhhh-------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence            9999998887422  11223             3468999999999874  466666 57999999988642  123344


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCC---C-----------CEEEEEcCCCcEEEEEeCCCCce-eEEEeccCCcc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNEN  416 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~-----------~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v  416 (487)
                      ..|...+               ++++|.|.   |           +.|++|+.|+.|+||+..++.-. ..+|.+|.+.|
T Consensus       146 ~aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV  210 (299)
T KOG1332|consen  146 FAHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV  210 (299)
T ss_pred             hcccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence            5565543               68999885   4           57999999999999999986543 44599999999


Q ss_pred             ccceEeeCCccccccccceeeecccce-ecCCCCCc-----cccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~-----~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                      +.+++.|.. +..  ...|+++++|+. .+|..+..     ...+..|...+.++.||+.|+.||+++ +|.+++|.
T Consensus       211 RDVAwaP~~-gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  211 RDVAWAPSV-GLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhhhcccc-CCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            999999963 211  234999999999 99933322     223446888999999999999999777 55688884

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.4e-26  Score=184.82  Aligned_cols=257  Identities=17%  Similarity=0.231  Sum_probs=199.2

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .+|.+.|..+...-.|++|||++.|++|+|+.+....                        ..+.+.+|.||+       
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~------------------------~s~ll~~L~Gh~-------   56 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG------------------------QSKLLAELTGHS-------   56 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC------------------------CceeeeEecCCC-------
Confidence            4588899999888899999999999999999988664                        234678999999       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ++|..++|..-.-|.+|++++.||.|.||+-.+++..+...                                  
T Consensus        57 -----GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e----------------------------------   97 (299)
T KOG1332|consen   57 -----GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE----------------------------------   97 (299)
T ss_pred             -----CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh----------------------------------
Confidence                 99999999632368999999999999999998886543311                                  


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                 ...|...|++++|.|.  |-.|+++ .||.|.+.+.+..+ ....      .....|.-.|++++|.|.
T Consensus        98 -----------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~------ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   98 -----------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS------KIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             -----------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch------hhhhccccccceeeecCc
Confidence                       2689999999999885  6678888 99999999998652 2221      124679999999999986


Q ss_pred             ---C----------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----CE
Q 011368          265 ---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----QH  327 (487)
Q Consensus       265 ---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----~~  327 (487)
                         |          .+.|++|+.|..|+||+..+++-..  .+.             +.+|...|+.++|.|.-    .+
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e~~-------------l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--ERT-------------LEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhh--hhh-------------hhhcchhhhhhhhccccCCCcee
Confidence               2          1469999999999999998864211  122             34568999999999974    47


Q ss_pred             EEEEe-CCeEEEEeCCCCCcee--eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          328 LLSRD-YMNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       328 l~s~~-d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      |++++ ||++.||..+.+..+-  ..+......               ++.+.||..|..|+.++.|+.+.+|.-+..
T Consensus       226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~---------------~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDV---------------VWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             eEEecCCCcEEEEEecCccCcccccccccCCcc---------------eEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            88886 6999999876422221  111111111               269999999999999999999999987643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.5e-25  Score=183.67  Aligned_cols=308  Identities=16%  Similarity=0.181  Sum_probs=204.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      +-+|.+.|++++|+.||++||+++.|++|+||++++-+..                      +-++++   .        
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----------------------eHr~~R---~--------  128 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----------------------EHRCIR---Q--------  128 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----------------------hhhHhh---c--------
Confidence            4569999999999999999999999999999998875432                      001110   0        


Q ss_pred             cccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                       .++. +..+.++|.  ||-+-++ ++-...++++|.+...+--..   .                            ..
T Consensus       129 -nve~-dhpT~V~Fa--pDc~s~vv~~~~g~~l~vyk~~K~~dG~~---~----------------------------~~  173 (420)
T KOG2096|consen  129 -NVEY-DHPTRVVFA--PDCKSVVVSVKRGNKLCVYKLVKKTDGSG---S----------------------------HH  173 (420)
T ss_pred             -cccC-CCceEEEEC--CCcceEEEEEccCCEEEEEEeeecccCCC---C----------------------------cc
Confidence             0111 235889994  5655444 455667899998754321000   0                            00


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                      ...|+    ...+-..|.-.+..+-...++.+|+++ .|..|.+|+++  ++.+..++.       ....-+..+.+|+|
T Consensus       174 ~v~~D----~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-------nq~~n~~aavSP~G  240 (420)
T KOG2096|consen  174 FVHID----NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-------NQSSNYDAAVSPDG  240 (420)
T ss_pred             ccccc----ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-------ccccccceeeCCCC
Confidence            00000    001125677778888888889999999 99999999999  455554432       23334567899999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCcc--ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~  342 (487)
                       .++++++..--|++|.+--++-  .....+.|+           +.||...|..++|+|++..+++.+ ||++++||+.
T Consensus       241 -RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-----------LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  241 -RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-----------LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             -cEEEEecCCCCceEEEEEeccCcchhhhhhhhe-----------eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence             9999999988899998743221  111112222           467899999999999999999986 6999999985


Q ss_pred             CC------CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          343 MD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       343 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      -.      .+.+++......           +.......+.++|+|+.||... ...++++..++++...          
T Consensus       309 VrY~~~qDpk~Lk~g~~pl~-----------aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~----------  366 (420)
T KOG2096|consen  309 VRYEAGQDPKILKEGSAPLH-----------AAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYP----------  366 (420)
T ss_pred             ceEecCCCchHhhcCCcchh-----------hcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccch----------
Confidence            31      112222211000           0000113799999999888654 4579999988774311          


Q ss_pred             ccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                                                          ..-.-|...|.+++|++||+++|++++..+.++.
T Consensus       367 ------------------------------------~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  367 ------------------------------------ELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             ------------------------------------hHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence                                                0112355688999999999999999988877753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.3e-25  Score=184.74  Aligned_cols=275  Identities=13%  Similarity=0.180  Sum_probs=213.3

Q ss_pred             EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecC
Q 011368           46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  125 (487)
Q Consensus        46 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~  125 (487)
                      .|++|++...|.=+++.-...              .+ .....|...+.-.+.+|.            ++|++++.    
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~--------------~~-~~s~~~~l~~lF~~~aH~------------~sitavAV----   51 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPK--------------GC-TDSVKPTLKPLFAFSAHA------------GSITALAV----   51 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCcc--------------cc-ccccceeeeccccccccc------------cceeEEEe----
Confidence            367788877766666543320              00 112244555677788888            99999998    


Q ss_pred             CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF  205 (487)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (487)
                      ++.++++|+.|.+|+|||+........                                               +..|.+
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~qlg~-----------------------------------------------ll~Hag   84 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQLGI-----------------------------------------------LLSHAG   84 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhhhcc-----------------------------------------------eecccc
Confidence            478999999999999999988765443                                               368999


Q ss_pred             ceeEEEeCCCCC--EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          206 NINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       206 ~v~~i~~s~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      .|+++.|.++-.  .|++| .||.|.+|+... -.++.       ++.+|.+.|+.++.+|.+ ++-++.+.|+.+++||
T Consensus        85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~-------slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLK-------SLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWN  155 (362)
T ss_pred             ceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEee-------eecccccccceeEecCCC-ceEEEEcCCceeeeeh
Confidence            999999988764  88888 999999999983 33433       568999999999999999 9999999999999999


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  362 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  362 (487)
                      +-.++.-    .....              ...-+.+.|+|.|.+++.+....|-+|.+.. ......+......     
T Consensus       156 LV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~~i~~~~r~-----  211 (362)
T KOG0294|consen  156 LVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFREIENPKRI-----  211 (362)
T ss_pred             hhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhhhhhccccc-----
Confidence            9988743    22222              2344559999999988888778999999986 5555444433221     


Q ss_pred             cccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc
Q 011368          363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  442 (487)
Q Consensus       363 ~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~  442 (487)
                                 .++.|- ++..|++|++|+.|.+||.... .....+.+|...|..+.+.-...+.+     |++.+.||
T Consensus       212 -----------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~-----lvTaSSDG  273 (362)
T KOG0294|consen  212 -----------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEY-----LVTASSDG  273 (362)
T ss_pred             -----------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceE-----EEEeccCc
Confidence                       245554 6778999999999999999875 66889999999999999877667777     99999999


Q ss_pred             e-ecCCCC
Q 011368          443 A-HENSSS  449 (487)
Q Consensus       443 ~-~~w~~~  449 (487)
                      . ++|+..
T Consensus       274 ~I~vWd~~  281 (362)
T KOG0294|consen  274 FIKVWDID  281 (362)
T ss_pred             eEEEEEcc
Confidence            9 999554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=206.62  Aligned_cols=381  Identities=15%  Similarity=0.129  Sum_probs=234.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe--cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      |..+++|++||++|+|+|+|-  ....++||++.....                           +.+|..|+       
T Consensus        77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~v---------------------------VAEfvdHK-------  122 (1080)
T KOG1408|consen   77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGV---------------------------VAEFVDHK-------  122 (1080)
T ss_pred             cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccc---------------------------hhhhhhcc-------
Confidence            567999999999999999985  666899999987654                           57788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                           -.|+|++|  +|.++++++.+  .|-.|.+||.+.+....  .......+..+.|......+..++...      
T Consensus       123 -----Y~vtcvaF--sp~~kyvvSVGsQHDMIVnv~dWr~N~~~a--snkiss~Vsav~fsEdgSYfvT~gnrH------  187 (1080)
T KOG1408|consen  123 -----YNVTCVAF--SPGNKYVVSVGSQHDMIVNVNDWRVNSSGA--SNKISSVVSAVAFSEDGSYFVTSGNRH------  187 (1080)
T ss_pred             -----ccceeeee--cCCCcEEEeeccccceEEEhhhhhhccccc--ccccceeEEEEEEccCCceeeeeeeee------
Confidence                 89999999  57889999876  46678888776442211  112223344444433333333222111      


Q ss_pred             eeeeeccceeeeecccCC--------C--------------ce---eEEEeCC---------------------------
Q 011368          187 HLEWTENMATKVYPHAHD--------F--------------NI---NSISNNS---------------------------  214 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~--------~--------------~v---~~i~~s~---------------------------  214 (487)
                      ...|......+ +...-.        +              .+   .+.+.+.                           
T Consensus       188 vk~wyl~~~~K-ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCI  266 (1080)
T KOG1408|consen  188 VKLWYLQIQSK-YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCI  266 (1080)
T ss_pred             EEEEEeecccc-ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcccccee
Confidence            11232222221 101100        0              00   0111111                           


Q ss_pred             --CCCEEEEe-cCCeEEEEEccCCCceeEEe--------------ecCCCCCCCCC----CcEEEEEEecCCCCEEEEEe
Q 011368          215 --DCETFVSA-DDLRINLWNLEISDQCFNIV--------------DMKPSNMDDLT----EVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       215 --~~~~l~s~-~d~~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~----~~v~~v~~~p~~~~~l~~~~  273 (487)
                        +.++|++| .+|.|++++..+-... .++              ... +.+.+..    ...-.+.|+|.. ..+.+..
T Consensus       267 cVs~r~I~cgCa~g~vrlFnp~tL~y~-~Tlpr~halg~d~a~~~q~~-~~~s~~~~a~fPD~IA~~Fdet~-~klscVY  343 (1080)
T KOG1408|consen  267 CVSSRLIACGCAKGMVRLFNPETLDYA-GTLPRSHALGSDTANLSQPE-PKNSESSPAIFPDAIACQFDETT-DKLSCVY  343 (1080)
T ss_pred             eeecceEEEeeccceeeecCcchhhhc-cccccccccccchhhccccc-ccccccCcccCCceeEEEecCCC-ceEEEEE
Confidence              35677887 8899999877642211 111              000 0000000    113467799988 8999999


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc------------CCCCEEEEEeCCeEEEEeC
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA------------NDGQHLLSRDYMNLKLWDI  341 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s------------~~~~~l~s~~d~~i~iwd~  341 (487)
                      .|..|.+||++.-..+.+ ...+--             |..-|+.+.--            |.+-++.+.+|++||+|++
T Consensus       344 ndhSlYvWDvrD~~kvgk-~~s~ly-------------HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l  409 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGK-CSSMLY-------------HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL  409 (1080)
T ss_pred             cCceEEEEeccccccccc-eeeeee-------------ccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence            999999999998543211 111222             34445554432            3344444446899999998


Q ss_pred             CCCCceeee-----ee-----------------cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          342 RMDSTPVAT-----FK-----------------IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       342 ~~~~~~~~~-----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      .. ...-..     +.                 .....+..-.....-|.-+++++++.||+|++||+|...|.++||++
T Consensus       410 ~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L  488 (1080)
T KOG1408|consen  410 AF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL  488 (1080)
T ss_pred             cc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence            74 111000     00                 00000000011122344556789999999999999999999999999


Q ss_pred             CCCCceeEEEeccCCccccceEeeCC-ccccccccceeeecccce-ecCCC---CCccccccccCCCeEEEEEcCCC--C
Q 011368          400 GVGSAGGITVEAGKNENRKPILQAAP-RARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTT--N  472 (487)
Q Consensus       400 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~g~~~~~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~--~  472 (487)
                      .+- ......++|...|.++.++... ..++     |+++++|.. ++++.   ..+...+-+|...|++|.|--.|  .
T Consensus       489 q~l-~~~~~~eAHesEilcLeyS~p~~~~kL-----LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  489 QEL-EYTCFMEAHESEILCLEYSFPVLTNKL-----LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             hhh-hhhhheecccceeEEEeecCchhhhHh-----hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence            877 4477889999999999998532 2234     999999999 88844   34556677999999999999877  5


Q ss_pred             EEEEecCCeEEEE
Q 011368          473 LIACANGNSLFFH  485 (487)
Q Consensus       473 ~la~~s~~~~~i~  485 (487)
                      .+.+++.|...+|
T Consensus       563 ~MiscGADksimF  575 (1080)
T KOG1408|consen  563 KMISCGADKSIMF  575 (1080)
T ss_pred             EEEeccCchhhhe
Confidence            6777776665544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.8e-25  Score=208.29  Aligned_cols=270  Identities=13%  Similarity=0.162  Sum_probs=205.0

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|+..-+.|+|.|+|++|++++.||.|++|+.......                     |     .++..+.       
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---------------------P-----~ti~~~g-------   56 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---------------------P-----ETIDISG-------   56 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---------------------C-----chhhccC-------
Confidence            468889999999999999999999999999997655211                     0     1122244       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++-    .+.+|++++.+++|.+|.+..++...+                                    
T Consensus        57 -----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i------------------------------------   91 (933)
T KOG1274|consen   57 -----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI------------------------------------   91 (933)
T ss_pred             -----ceeEEEee----cccceEEeeccceEEEeeCCCCCccce------------------------------------
Confidence                 67888875    355899999999999999998865433                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +....-++++++++-+|+++|.| +|-.|++-+........        .+.+|.++|.++.|+|++ +
T Consensus        92 -----------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--------~lrgh~apVl~l~~~p~~-~  151 (933)
T KOG1274|consen   92 -----------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--------VLRGHDAPVLQLSYDPKG-N  151 (933)
T ss_pred             -----------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--------eecccCCceeeeeEcCCC-C
Confidence                       24567789999999999999999 99999999998665543        467999999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEeCCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~d~~i~iwd~~~~~~  346 (487)
                      +||+.+-||.|++||+.++.+.    +.+.+-  .+.   +-......+..++|+|+ |.+++.+.|+.|++|+... ..
T Consensus       152 fLAvss~dG~v~iw~~~~~~~~----~tl~~v--~k~---n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we  221 (933)
T KOG1274|consen  152 FLAVSSCDGKVQIWDLQDGILS----KTLTGV--DKD---NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WE  221 (933)
T ss_pred             EEEEEecCceEEEEEcccchhh----hhcccC--Ccc---ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ce
Confidence            9999999999999999998755    333330  000   00011456788999999 5566667889999999986 77


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      ....+.......           .  +..+.|||+|+|||+++.||.|.|||+++-+.     ......|.+++|.|.
T Consensus       222 ~~f~Lr~~~~ss-----------~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  222 LQFKLRDKLSSS-----------K--FSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPN  281 (933)
T ss_pred             eheeeccccccc-----------c--eEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCC
Confidence            777766543321           1  25899999999999999999999999987211     222344555555554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=4.1e-25  Score=206.46  Aligned_cols=373  Identities=14%  Similarity=0.143  Sum_probs=273.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      +...|+++.=+|-=..+|.|..+|+|.|+++..++.                           +.+|+-..         
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------------l~sFk~d~---------  244 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------------LMSFKQDW---------  244 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEEEEcccCcE---------------------------EEEEEccc---------
Confidence            457899999999888999999999999999998875                           46676555         


Q ss_pred             ccccceeEEEEEecCCCcE-EEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         ++|+.++|  ..||.. +++|+..|.+.+||++..+........+...+....+.+...-++..+.+ .....+.-.
T Consensus       245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~vfD  318 (910)
T KOG1539|consen  245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVWVFD  318 (910)
T ss_pred             ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEEEee
Confidence               88999999  567765 55566779999999999887776654444445555555444444444433 222222221


Q ss_pred             -eec-cceeeeecccCCCceeEEEeC-CCCCEEEEe-cCCeEEEEEccCCC------c--------eeE-----------
Q 011368          190 -WTE-NMATKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISD------Q--------CFN-----------  240 (487)
Q Consensus       190 -~~~-~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~-~d~~i~iwd~~~~~------~--------~~~-----------  240 (487)
                       -+. .+.++. -.||..+..|+.|. .+|.++.++ .|++.+.+++....      +        ...           
T Consensus       319 ~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  319 SGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             CCCCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence             111 122222 36888888888886 577777777 78776666543110      0        000           


Q ss_pred             ----------------------------Ee----------ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          241 ----------------------------IV----------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       241 ----------------------------~~----------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                                                  ++          ..++..++.-...+++++.++.| ++.+.|+..|.|-+|+
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFN  476 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEE
Confidence                                        00          01111222233568899999999 9999999999999999


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      +++|-..    ..|..          -+.|..+|+.++...-++.+++++ +|.+++||... ..++..+......    
T Consensus       477 mQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~----  537 (910)
T KOG1539|consen  477 MQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSI----  537 (910)
T ss_pred             cccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCc----
Confidence            9998643    33321          134688999999998888888874 69999999986 6666666654432    


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccc
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  441 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~  441 (487)
                                  ..+..+.....++.+.+|-.|+++|..+. .....+.+|.+.++++.|+|  ++++     |++++.|
T Consensus       538 ------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~--DgrW-----lisasmD  597 (910)
T KOG1539|consen  538 ------------TGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP--DGRW-----LISASMD  597 (910)
T ss_pred             ------------ceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC--CCcE-----EEEeecC
Confidence                        36777778889999999999999999987 56889999999999999999  8999     9999999


Q ss_pred             ce-ecCCCC-CccccccccCCCeEEEEEcCCCCEEEEec--CCeEEEEe
Q 011368          442 QA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  486 (487)
Q Consensus       442 ~~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~s--~~~~~i~~  486 (487)
                      +. ++|+.. .........+.+.+.+.|||.|.+||++.  .+++|+|.
T Consensus       598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            99 999542 34455667888999999999999999988  46799995

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.6e-25  Score=182.78  Aligned_cols=314  Identities=16%  Similarity=0.209  Sum_probs=220.4

Q ss_pred             cccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .|.+.|+++...+ .|+|+++|+.||.|.+||++.....+..    ..+-+..|        ..-...-.+|.       
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s----~li~k~~c--------~v~~~h~~~Hk-------  101 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS----GLIAKHKC--------IVAKQHENGHK-------  101 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc----cceeheee--------eccccCCccce-------
Confidence            4889999999998 6899999999999999999765421000    00000000        00011123455       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           -.|..+.|.| -|...|.+++.|.++++||..+-+....                                    
T Consensus       102 -----y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~------------------------------------  139 (397)
T KOG4283|consen  102 -----YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVD------------------------------------  139 (397)
T ss_pred             -----eeeeeeEEee-ecCceeecccccceEEEeecccceeeEE------------------------------------
Confidence                 7899999998 4566889999999999999998765433                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                  ...++.|+.-+++|   ...+||+| +|-.|++-|+..+. +.       +.+.+|...|.++.|+|.
T Consensus       140 ------------F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~s-------H~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  140 ------------FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FS-------HTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ------------eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ce-------eeeccccCceEEEEeccC
Confidence                        23456678888887   35577888 99999999999543 33       357899999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccc-cCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIR  342 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~  342 (487)
                      ..-.|++|+.||.|++||++...-+   ..++..|... +.....-..|.+.|..++|+.++.+++++ .|..+++|+..
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            8677889999999999999976333   2666666421 11112356789999999999999999986 57999999998


Q ss_pred             CCCceeeeeec--ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccce
Q 011368          343 MDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  420 (487)
Q Consensus       343 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  420 (487)
                      .+...+..+..  |+....           +. ..+. +-+...++---.++.+.++++-.+ ..+..+..|-..+.+.+
T Consensus       277 ~G~ntl~~~g~~~~n~~~~-----------~~-~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k~i~c~~  342 (397)
T KOG4283|consen  277 SGRNTLREFGPIIHNQTTS-----------FA-VHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLKRINCAA  342 (397)
T ss_pred             cCccccccccccccccccc-----------ce-EEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccceeeEEe
Confidence            74444433321  111110           00 0112 234444444445688899998887 45788888877788877


Q ss_pred             EeeCCccccccccceeeecccce-ecCCC
Q 011368          421 LQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       421 ~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      +.|  +.+.     ..+|..|+. ..|..
T Consensus       343 ~~~--~fq~-----~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  343 YRP--DFEQ-----CFTGDMNGNIYMWSP  364 (397)
T ss_pred             ecC--chhh-----hhccccCCccccccc
Confidence            777  4444     788999998 88844

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=213.09  Aligned_cols=240  Identities=16%  Similarity=0.248  Sum_probs=199.3

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...+|.+.|.+++|..-+.+|++|+.|.+++|||..++++                           ..++.+|.     
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C---------------------------~~~l~gh~-----  291 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC---------------------------THSLQGHT-----  291 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE---------------------------EEEecCCC-----
Confidence            4677999999999998789999999999999999998876                           58999999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|.++..    .+.++++|+.|.+|++|++.++....+                                  
T Consensus       292 -------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l----------------------------------  326 (537)
T KOG0274|consen  292 -------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNL----------------------------------  326 (537)
T ss_pred             -------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEE----------------------------------
Confidence                   88999987    345788899999999999998877665                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   +.+|..+|+++..+  +.++++| .|++|++||+. ..+++.       ++.+|...|+++.+.+. 
T Consensus       327 -------------~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~-------sl~gH~~~V~sl~~~~~-  382 (537)
T KOG0274|consen  327 -------------LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLK-------SLSGHTGRVYSLIVDSE-  382 (537)
T ss_pred             -------------eccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeee-------eecCCcceEEEEEecCc-
Confidence                         36699999999998  7899998 99999999999 556664       46899999999988874 


Q ss_pred             CCEEEEEeCCCeEEEEEccCC-ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                       ..+++|+.|+.|++||+++. +..    .++.+|             ..-+..+.+  .+++|++++ |+.|++||...
T Consensus       383 -~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~h-------------~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  383 -NRLLSGSLDTTIKVWDLRTKRKCI----HTLQGH-------------TSLVSSLLL--RDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             -ceEEeeeeccceEeecCCchhhhh----hhhcCC-------------ccccccccc--ccceeEeccccccEEEeeccc
Confidence             58999999999999999998 443    666664             555655544  467888875 79999999987


Q ss_pred             CCceeeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          344 DSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       344 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                       +.+++.+.++ ...+               +.+++.  ...+++++.||++++||++++...
T Consensus       443 -~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  443 -GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             -CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCeeEEEecccCchh
Confidence             8999999884 3422               355554  467889999999999999998654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=4.3e-24  Score=188.80  Aligned_cols=353  Identities=13%  Similarity=0.187  Sum_probs=240.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...|.|++|.++|+ +++|+.+|.|.||+..+.+.                           .+...+|.          
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---------------------------~k~~~aH~----------  287 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI---------------------------SKQVHAHD----------  287 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE---------------------------EeEeeecC----------
Confidence            36799999999997 78999999999999765432                           34444888          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        +.|.+++..  .+|. |++|+.|+.|..||-.-.+...++-......+..+.---++  ++.....   ..+..+..+
T Consensus       288 --ggv~~L~~l--r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtr---N~iL~Gt~~  357 (626)
T KOG2106|consen  288 --GGVFSLCML--RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTR---NFILQGTLE  357 (626)
T ss_pred             --CceEEEEEe--cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEeecc---ceEEEeeec
Confidence              999999984  5565 66699999999999332322222211111112222111111  1111111   111111111


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                      .  .......+|......++.+|+.+.+++| .|+.+++|+ + .+..+..+         ...++.|+.|+|.|  .+|
T Consensus       358 ~--~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va  422 (626)
T KOG2106|consen  358 N--GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVA  422 (626)
T ss_pred             C--CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEE
Confidence            1  1222236899999999999999999999 999999999 3 34333321         34678999999997  899


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      .|+..|...+.|.++..++    ..-..              ..+++.+.|+|+|.+||.|+ |+.|+||.+...+..+.
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv----~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLV----TIHTD--------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             EeeccceEEEEecccceeE----EEEec--------------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            9999999999999986543    22111              46899999999999999997 69999999987666666


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE----------------E-Eecc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----------------T-VEAG  412 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~----------------~-~~~~  412 (487)
                      ....+.. .             .++.+.||+|+++|.+-+.|-.|..|....-++...                . ...+
T Consensus       485 r~~k~~g-s-------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~  550 (626)
T KOG2106|consen  485 RVGKCSG-S-------------PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD  550 (626)
T ss_pred             EeeeecC-c-------------eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence            6554443 1             126999999999999999999999994433211100                0 0123


Q ss_pred             CCccccceEeeCCccccccccceeeecccce-ecC-----CCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEE
Q 011368          413 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-----SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  485 (487)
Q Consensus       413 ~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w-----~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~  485 (487)
                      ...++.++-+.  ...+     +++|...+. +++     +.......+.+|..-|+.++|.-+..++.+.+ +..++.|
T Consensus       551 ~t~i~a~~rs~--~~~~-----lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW  623 (626)
T KOG2106|consen  551 GTDINAVARSH--CEKL-----LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQW  623 (626)
T ss_pred             CchHHHhhhhh--hhhh-----hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEE
Confidence            33344444443  4555     888888888 888     33344556778999999999998887776555 5568888


Q ss_pred             e
Q 011368          486 Y  486 (487)
Q Consensus       486 ~  486 (487)
                      .
T Consensus       624 ~  624 (626)
T KOG2106|consen  624 R  624 (626)
T ss_pred             E
Confidence            6

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=9.3e-26  Score=199.12  Aligned_cols=286  Identities=15%  Similarity=0.217  Sum_probs=219.5

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..+.|...|.++++|...++++||++ |.|+|||+......                        .++..+..-+     
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdcl~-----  463 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDCLN-----  463 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------CccccccccC-----
Confidence            45778999999999999999999986 78999998754321                        0112222221     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                           -++-|.++..  .+||+.|++|+.-.++.|||+.........                                 
T Consensus       464 -----rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprika---------------------------------  503 (705)
T KOG0639|consen  464 -----RDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKA---------------------------------  503 (705)
T ss_pred             -----cccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhh---------------------------------
Confidence                 1266778887  589999999999999999999865422110                                 


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  -+....-.+++++.+||.++.++| .||.|.|||+. +...+       +.+++|.+.+.|+..+++|
T Consensus       504 ------------eltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~V-------rqfqGhtDGascIdis~dG  563 (705)
T KOG0639|consen  504 ------------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLV-------RQFQGHTDGASCIDISKDG  563 (705)
T ss_pred             ------------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceee-------ecccCCCCCceeEEecCCC
Confidence                        023444567889999999999999 99999999999 44343       3589999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~  344 (487)
                       ..|-+|+-|++||.||++.++.+.+  ..|                ...|.++.++|++.+|+.|.. +.+.|-...  
T Consensus       564 -tklWTGGlDntvRcWDlregrqlqq--hdF----------------~SQIfSLg~cP~~dWlavGMens~vevlh~s--  622 (705)
T KOG0639|consen  564 -TKLWTGGLDNTVRCWDLREGRQLQQ--HDF----------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTS--  622 (705)
T ss_pred             -ceeecCCCccceeehhhhhhhhhhh--hhh----------------hhhheecccCCCccceeeecccCcEEEEecC--
Confidence             9999999999999999999864421  112                458999999999999999964 888887764  


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      +.....+..|+..+               .++.|++-|+++++.+.|+.+..|...-|..               .|.. 
T Consensus       623 kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyGas---------------iFqs-  671 (705)
T KOG0639|consen  623 KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------IFQS-  671 (705)
T ss_pred             CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccccc---------------eeec-
Confidence            45556666676633               5999999999999999999999999876622               1111 


Q ss_pred             CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEe
Q 011368          425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~  486 (487)
                                                      .-..+|+++..|.|.++|++||++ .-.||.
T Consensus       672 --------------------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  672 --------------------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             --------------------------------cccCcceeeeeccCceEEEecCCCcceEEEE
Confidence                                            122378899999999999999977 455553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.3e-25  Score=183.48  Aligned_cols=254  Identities=20%  Similarity=0.298  Sum_probs=181.3

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      -.|+.|++.|.+||+|+.||.|.|||+.|...                           .+.+.+|.            .
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---------------------------ar~lsaH~------------~   66 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI---------------------------ARMLSAHV------------R   66 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch---------------------------hhhhhccc------------c
Confidence            78999999999999999999999999987654                           36788998            8


Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      +|.+++|  +++|..|++++.|..|.+||+..|.+.+.                                          
T Consensus        67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~r------------------------------------------  102 (405)
T KOG1273|consen   67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKR------------------------------------------  102 (405)
T ss_pred             ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeE------------------------------------------
Confidence            9999999  68999999999999999999999875543                                          


Q ss_pred             eeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEE
Q 011368          195 ATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~  271 (487)
                            ....++|+...|+|. .+..+++ .+..-.+-++..+...  .+   +..-. ..+....+..|++.| ++|++
T Consensus       103 ------irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~L---p~d~d~dln~sas~~~fdr~g-~yIit  170 (405)
T KOG1273|consen  103 ------IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VL---PKDDDGDLNSSASHGVFDRRG-KYIIT  170 (405)
T ss_pred             ------EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--ec---cCCCccccccccccccccCCC-CEEEE
Confidence                  345778999999984 3444444 5555566666632221  11   00111 112223445789999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC---C--
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD---S--  345 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~---~--  345 (487)
                      |...|.+.++|..+.+++    ..++.-            -...|..+.++..|++|+.- +|..||.|+++.-   +  
T Consensus       171 GtsKGkllv~~a~t~e~v----as~rit------------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECV----ASFRIT------------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             ecCcceEEEEecchheee----eeeeec------------hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence            999999999999987654    222220            02578999999999999885 6899999998621   1  


Q ss_pred             -cee--eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccC
Q 011368          346 -TPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       346 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                       .+.  ..++   ..+.+.        .  -..++||.+|.|+++|+. -..++||.-..| ..++.+.+.+
T Consensus       235 ~e~e~~~K~q---DvVNk~--------~--Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k  292 (405)
T KOG1273|consen  235 GEVEPEHKLQ---DVVNKL--------Q--WKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK  292 (405)
T ss_pred             CCcChhHHHH---HHHhhh--------h--hhheeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence             111  1111   111000        0  037999999999998874 467999998887 4455555554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.7e-25  Score=180.51  Aligned_cols=230  Identities=16%  Similarity=0.242  Sum_probs=179.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.|.+|+|  +.+|..|++++.|+++++|+++..+.....                                        
T Consensus        21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~----------------------------------------   58 (313)
T KOG1407|consen   21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL----------------------------------------   58 (313)
T ss_pred             hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh----------------------------------------
Confidence            88999999  689999999999999999999877433211                                        


Q ss_pred             ceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                           -..+|.+.|-.++|+| +...++++ .|.+|++||++.++.+..+        . ....-..+.|+|+| .++++
T Consensus        59 -----~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i--------~-~~~eni~i~wsp~g-~~~~~  123 (313)
T KOG1407|consen   59 -----VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI--------E-TKGENINITWSPDG-EYIAV  123 (313)
T ss_pred             -----cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------e-ccCcceEEEEcCCC-CEEEE
Confidence                 1378999999999987 56778888 9999999999965544433        1 12223457899999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~  350 (487)
                      ++.|..|.+.|.++.+..    ...+.              ...+..++|+.++.+++.. +.|.|.|..... -+++..
T Consensus       124 ~~kdD~it~id~r~~~~~----~~~~~--------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~s  184 (313)
T KOG1407|consen  124 GNKDDRITFIDARTYKIV----NEEQF--------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQS  184 (313)
T ss_pred             ecCcccEEEEEeccccee----ehhcc--------------cceeeeeeecCCCCEEEEecCCceEEEEeccc-cccccc
Confidence            999999999999987644    22222              3467888998777766654 459999999985 889999


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccc
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  430 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  430 (487)
                      +++|...-               .++.|+|+|+++|+|+.|-.+.+||++.. .+...+..+.-||+.+.|+.  ++++ 
T Consensus       185 i~AH~snC---------------icI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~--dg~~-  245 (313)
T KOG1407|consen  185 IKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSH--DGRM-  245 (313)
T ss_pred             cccCCcce---------------EEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCceEEEEecc--Ccce-
Confidence            99998642               38999999999999999999999999865 44666666666777777765  6666 


Q ss_pred             cccceeeecccc
Q 011368          431 SLSNLTRGLYRQ  442 (487)
Q Consensus       431 ~~~~l~~g~~~~  442 (487)
                          |++|+.|.
T Consensus       246 ----lASaSEDh  253 (313)
T KOG1407|consen  246 ----LASASEDH  253 (313)
T ss_pred             ----eeccCccc
Confidence                66666664

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.3e-24  Score=177.73  Aligned_cols=211  Identities=19%  Similarity=0.240  Sum_probs=164.5

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|+++.|  +.+|.++++++.|.+++|||..+++..+.                                         
T Consensus        15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~t-----------------------------------------   51 (311)
T KOG1446|consen   15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKT-----------------------------------------   51 (311)
T ss_pred             CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeE-----------------------------------------
Confidence            78999999  68999999999999999999999987665                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCC-EEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCE-TFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                            +..+...+..++|....+ .+.+.  .|.+|+..++.+ .+.++       .+.||...|.+++.+|-+ ..++
T Consensus        52 ------i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylR-------YF~GH~~~V~sL~~sP~~-d~Fl  116 (311)
T KOG1446|consen   52 ------INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLR-------YFPGHKKRVNSLSVSPKD-DTFL  116 (311)
T ss_pred             ------eecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEE-------EcCCCCceEEEEEecCCC-CeEE
Confidence                  256667788888865444 44444  699999999994 44554       479999999999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC-Ccee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-STPV  348 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~-~~~~  348 (487)
                      +++.|++|++||++..+..    -.+..               ..-..++|.|.|-++|++.. +.|++||++.- ..+.
T Consensus       117 S~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  117 SSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             ecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence            9999999999999976532    22222               23456789999999999876 69999999874 4556


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      ..+.......          +  ..+.+.|||||++|+.++..+.+++.|.-+|. .+.++..+..
T Consensus       178 ~tf~i~~~~~----------~--ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~  230 (311)
T KOG1446|consen  178 TTFSITDNDE----------A--EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPN  230 (311)
T ss_pred             eeEccCCCCc----------c--ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccC
Confidence            6655442211          1  12589999999999999999999999999884 5566655543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=5.4e-25  Score=198.35  Aligned_cols=331  Identities=16%  Similarity=0.281  Sum_probs=227.3

Q ss_pred             hhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee
Q 011368           18 QAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (487)
Q Consensus        18 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (487)
                      +.|-..+.....+|++.|.||...|.|.+||+|+.||+|+||.+.++.+                               
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-------------------------------  434 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-------------------------------  434 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-------------------------------
Confidence            3333334445567999999999999999999999999999999999865                               


Q ss_pred             cCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc
Q 011368           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (487)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                               ++++.+++.|.+|+|+|.++-..||++-.+. +.|-+..-|..+...               +....+...
T Consensus       435 ---------vr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~---------------~t~ell~~~  489 (733)
T KOG0650|consen  435 ---------VRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG---------------PTKELLASA  489 (733)
T ss_pred             ---------EEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc---------------chhhhhhcC
Confidence                     2333344779999998877766666665555 666655444211110               001111111


Q ss_pred             CCCCcceeeeeeeecc------ceeeeecccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCceeEEeecCCC
Q 011368          178 NPPSFAHGYHLEWTEN------MATKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPS  247 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~  247 (487)
                      -...........|...      ..+.+ ...|...|+.+.|+..|.+|++.    ....|.|.++......        .
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--------~  560 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--------S  560 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEE-EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--------C
Confidence            1111111133344432      11122 25789999999999999999995    3467889998843321        1


Q ss_pred             CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368          248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  327 (487)
Q Consensus       248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~  327 (487)
                      .+....+.|.++.|+|.. .+|++++. ..|+|||+..+.+..   +.+.+              ...|..++.+|.|..
T Consensus       561 PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvK---kL~tg--------------~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  561 PFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVK---KLLTG--------------SKWISSMSIHPNGDN  621 (733)
T ss_pred             chhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHH---HHhcC--------------CeeeeeeeecCCCCe
Confidence            344456779999999998 67776664 479999999866542   22333              458999999999999


Q ss_pred             EEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          328 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       328 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      |+.|+ |+.+..||+....++.+.+..|...+               ++++|++.-.++++|+.||++.|+.-.--... 
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl-  685 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL-  685 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcEEEEeeeeehhh-
Confidence            99887 59999999988778999999998755               69999999999999999999999874321110 


Q ss_pred             EEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCC----CeEEEEEcCCCCEEEEecCC-e
Q 011368          407 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS----KLLHLAWHPTTNLIACANGN-S  481 (487)
Q Consensus       407 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~----~v~~~~~spd~~~la~~s~~-~  481 (487)
                               .......|                            +..+.+|..    .|.++.|||...+|++++.| .
T Consensus       686 ---------~qnpliVP----------------------------lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  686 ---------LQNPLIVP----------------------------LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             ---------hcCCceEe----------------------------eeeccCceeecccceEeecccCCCceEEecCCCce
Confidence                     00111111                            112223333    58899999999999998877 4


Q ss_pred             EEEE
Q 011368          482 LFFH  485 (487)
Q Consensus       482 ~~i~  485 (487)
                      +.+|
T Consensus       729 irlf  732 (733)
T KOG0650|consen  729 IRLF  732 (733)
T ss_pred             EEee
Confidence            7777

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.9e-26  Score=198.75  Aligned_cols=271  Identities=18%  Similarity=0.267  Sum_probs=211.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.+..+.|.  ++...|++++.|..|++|++..++.....                                        
T Consensus       176 gev~~v~~l--~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~----------------------------------------  213 (459)
T KOG0288|consen  176 GEVHDVEFL--RNSDTLATGGSDRIIKLWNVLGEKSELIS----------------------------------------  213 (459)
T ss_pred             cccceeEEc--cCcchhhhcchhhhhhhhhcccchhhhhh----------------------------------------
Confidence            889999995  56679999999999999999877622110                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                           .+.+..++|+.+.|.+++++++++ .|+.+++|++.. .+..       .++.+|.+.|+++.|.... ..+++|
T Consensus       214 -----tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~-------~TLsGHtdkVt~ak~~~~~-~~vVsg  279 (459)
T KOG0288|consen  214 -----TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLR-------HTLSGHTDKVTAAKFKLSH-SRVVSG  279 (459)
T ss_pred             -----hhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhh-------hhhcccccceeeehhhccc-cceeec
Confidence                 146778899999999999998888 999999999994 3333       4678999999999999876 569999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~  351 (487)
                      +.|.+|++||+....+.    +..-.              ...+..|+.+  ...+++|. |++|++||.++ ..+....
T Consensus       280 s~DRtiK~WDl~k~~C~----kt~l~--------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-~~~~~sv  338 (459)
T KOG0288|consen  280 SADRTIKLWDLQKAYCS----KTVLP--------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRS-ADKTRSV  338 (459)
T ss_pred             cccchhhhhhhhhhhee----ccccc--------------cccccceEec--ceeeeecccccceEEEeccC-CceeeEe
Confidence            99999999999986543    22222              2567777776  45666774 69999999997 7888888


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc----CCccccceEeeCCcc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG----KNENRKPILQAAPRA  427 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~  427 (487)
                      ..+...                +++..+++|..|.+.+.|.++.+.|+.+. ...+.+.+.    ....+.+.|+|  ++
T Consensus       339 ~~gg~v----------------tSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSp--d~  399 (459)
T KOG0288|consen  339 PLGGRV----------------TSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSP--DG  399 (459)
T ss_pred             ecCcce----------------eeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECC--CC
Confidence            777632                69999999999999999999999999987 445555432    23378899998  67


Q ss_pred             ccccccceeeecccce-ecCCC--CCccccccc-cCC-CeEEEEEcCCCCEEEEecCCe-EEEE
Q 011368          428 RRSSLSNLTRGLYRQA-HENSS--SGHHELSYN-LSS-KLLHLAWHPTTNLIACANGNS-LFFH  485 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~-~~~-~v~~~~~spd~~~la~~s~~~-~~i~  485 (487)
                      .+     +++|+.|+. ++|+.  ++....... +.. .|++++|+|.|..|++++.+. ..+|
T Consensus       400 ~Y-----vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 SY-----VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ce-----eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            77     999999999 99944  333333222 222 699999999999999988654 6666

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=3.5e-25  Score=213.37  Aligned_cols=270  Identities=15%  Similarity=0.241  Sum_probs=198.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|+|+.|+|||++||+|+.|+.|.||+....-.   ...+..    .+  .......++.+..+.+|.      
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~---~~~fgs----~g--~~~~vE~wk~~~~l~~H~------  129 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS---GTVFGS----TG--GAKNVESWKVVSILRGHD------  129 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC---cccccc----cc--cccccceeeEEEEEecCC------
Confidence            456899999999999999999999999999999873100   000000    00  011233567889999999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|..++|  +|++.+|++++.|++|.+||..+.+....                                   
T Consensus       130 ------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~v-----------------------------------  166 (942)
T KOG0973|consen  130 ------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKV-----------------------------------  166 (942)
T ss_pred             ------Cccceecc--CCCccEEEEecccceEEEEccccceeeee-----------------------------------
Confidence                  88999999  67999999999999999999998865544                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +.+|.+.|-.+.|.|-|++||+- +|++|++|++.. -.+.+.+..+ ..-..-......+.|+||| 
T Consensus       167 ------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~p-f~~~~~~T~f~RlSWSPDG-  231 (942)
T KOG0973|consen  167 ------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKP-FEESPLTTFFLRLSWSPDG-  231 (942)
T ss_pred             ------------eecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccc-hhhCCCcceeeecccCCCc-
Confidence                        48999999999999999999998 999999999774 2333333211 1111223457889999999 


Q ss_pred             CEEEEEeC----CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC------C---------C-
Q 011368          267 NLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND------G---------Q-  326 (487)
Q Consensus       267 ~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~------~---------~-  326 (487)
                      .+|++...    -..+.|.+-.+-+.-    ..             +-||..++.++.|+|.      .         . 
T Consensus       232 ~~las~nA~n~~~~~~~IieR~tWk~~----~~-------------LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y  294 (942)
T KOG0973|consen  232 HHLASPNAVNGGKSTIAIIERGTWKVD----KD-------------LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY  294 (942)
T ss_pred             CeecchhhccCCcceeEEEecCCceee----ee-------------eecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence            99998754    235666665443211    22             3457899999999872      1         1 


Q ss_pred             -EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          327 -HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       327 -~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                       .+|+|+ |++|.||.... .+++.....-...           +   |.+++|+|||..|.++|.||+|.+..++..
T Consensus       295 ~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~-----------S---I~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  295 CIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK-----------S---IVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEEEecCCccEEEEecCC-CCchhhhhhhhcC-----------c---eeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence             344565 79999999876 5665554322111           1   259999999999999999999999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=5.8e-25  Score=183.90  Aligned_cols=290  Identities=16%  Similarity=0.223  Sum_probs=208.9

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCc-ceeEeeecCCCccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE-YRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      -...+.|||||.-|.+-+.|..+++|++......           +...     .+. .+...+++-..           
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys-----------~~~~-----~~~~~~~~~~~r~~e-----------  103 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS-----------KKAD-----GPLNFSKHLSYRYQE-----------  103 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcc-----------cCCC-----CccccccceeEEecc-----------
Confidence            3567899999999999999999999997532210           0000     000 00001111011           


Q ss_pred             ccceeEEEEEe-----cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          113 EEKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       113 ~~~I~~v~~~~-----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      .+.|..-+|-+     .|+..++++.+.+.-|++||.-+|+......                                 
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~---------------------------------  150 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR---------------------------------  150 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh---------------------------------
Confidence            15577777754     4677899999999999999999998765421                                 


Q ss_pred             eeeeccceeeeecccCCC---ceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          188 LEWTENMATKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                  ...|..   ...+++|+|||..|++|....|+++|+..++.....+......-.+..+.+.|++|+|.
T Consensus       151 ------------~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~  218 (406)
T KOG2919|consen  151 ------------AYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPM  218 (406)
T ss_pred             ------------hhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCC
Confidence                        022332   34689999999999999999999999965665443321111112344678899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR  342 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~  342 (487)
                      .+..+++++....+-||.-..+..+    ..+.+             |.+.|+.+.|.++|+.|++|.  +..|-.||++
T Consensus       219 ~~~~~a~gsY~q~~giy~~~~~~pl----~llgg-------------h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  219 DSKTLAVGSYGQRVGIYNDDGRRPL----QLLGG-------------HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             CCcceeeecccceeeeEecCCCCce----eeecc-------------cCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            8679999999999999887776654    44444             589999999999999999986  5899999999


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      ....++..+..|....        ++-|    -....|++++|++|+.||.|++||++........+..+...++.+++.
T Consensus       282 ~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln  349 (406)
T KOG2919|consen  282 YSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN  349 (406)
T ss_pred             hccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence            8778888887776511        1111    356678999999999999999999998556566777777777777777


Q ss_pred             eC
Q 011368          423 AA  424 (487)
Q Consensus       423 ~~  424 (487)
                      |.
T Consensus       350 P~  351 (406)
T KOG2919|consen  350 PI  351 (406)
T ss_pred             cc
Confidence            64

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=9.2e-25  Score=189.56  Aligned_cols=245  Identities=16%  Similarity=0.225  Sum_probs=197.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .+|...|+.+.|+|+...+++++.|-.|+||.......                           ......|+       
T Consensus       258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------------------------~~~~~~h~-------  303 (506)
T KOG0289|consen  258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------------------------PTSSRPHE-------  303 (506)
T ss_pred             cCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------------------------cccccccc-------
Confidence            45888999999999999999999999999999876544                           25677787       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ++|+.+..+  +.|+||++++.|++..+.|+.++........                                 
T Consensus       304 -----~~V~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~---------------------------------  343 (506)
T KOG0289|consen  304 -----EPVTGLSLH--PTGEYLLSASNDGTWAFSDISSGSQLTVVSD---------------------------------  343 (506)
T ss_pred             -----ccceeeeec--cCCcEEEEecCCceEEEEEccCCcEEEEEee---------------------------------
Confidence                 999999995  6799999999999999999999886654210                                 


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                  ....-.+++.+|+|||..|.+| .|+.|+|||+..+...        ..+.+|.++|..++|+.+| .
T Consensus       344 ------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~--------a~Fpght~~vk~i~FsENG-Y  402 (506)
T KOG0289|consen  344 ------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV--------AKFPGHTGPVKAISFSENG-Y  402 (506)
T ss_pred             ------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc--------ccCCCCCCceeEEEeccCc-e
Confidence                        1223458999999999999999 9999999999965532        4688999999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC-CC
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM-DS  345 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~-~~  345 (487)
                      +|+++.+|+.|++||+|..+..    +.+...            ....+.++.|.+.|.+|+.++ +=.|++++-.+ ..
T Consensus       403 ~Lat~add~~V~lwDLRKl~n~----kt~~l~------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  403 WLATAADDGSVKLWDLRKLKNF----KTIQLD------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             EEEEEecCCeEEEEEehhhccc----ceeecc------------ccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence            9999999999999999986543    444430            023699999999999999874 34555555322 24


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      ..+..+..|.+..               +.+.|....++++++|.|..++++.+
T Consensus       467 ~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  467 TEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence            5666666666543               58999999999999999999888764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.9e-25  Score=192.74  Aligned_cols=250  Identities=14%  Similarity=0.181  Sum_probs=193.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|.+++.|+||+|||+|+.|..|.||+.++.+.                           +..+++|.        
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------------------------v~~~~ghr--------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------------------------VKVFKGHR--------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch---------------------------hhcccccc--------
Confidence            7899999999999999999999999999999998875                           46689999        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          +.|.+++|-  .....+++++.|++|++|+++.......                                     
T Consensus       245 ----~~V~~L~fr--~gt~~lys~s~Drsvkvw~~~~~s~vet-------------------------------------  281 (479)
T KOG0299|consen  245 ----GAVSSLAFR--KGTSELYSASADRSVKVWSIDQLSYVET-------------------------------------  281 (479)
T ss_pred             ----cceeeeeee--cCccceeeeecCCceEEEehhHhHHHHH-------------------------------------
Confidence                999999994  4556799999999999999987664433                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +.+|.+.|..|....-++.+.+| .|+++++|++....+.+         +.++.+.+.|++|-.+  ..
T Consensus       282 ----------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~sidcv~~In~--~H  340 (479)
T KOG0299|consen  282 ----------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEGSIDCVAFIND--EH  340 (479)
T ss_pred             ----------HhCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCCCeeeEEEecc--cc
Confidence                      47999999999998888888888 99999999996443332         4678889999999876  68


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      |++|+.+|.|.+|++...+.+.   ..-..|...+....  .++..+|++++..|...++++|+ +|.|++|-+....+.
T Consensus       341 fvsGSdnG~IaLWs~~KKkplf---~~~~AHgv~~~~~~--~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  341 FVSGSDNGSIALWSLLKKKPLF---TSRLAHGVIPELDP--VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             eeeccCCceEEEeeecccCcee---EeeccccccCCccc--cccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            9999999999999999877542   12223333333211  12235999999999999999997 599999999864333


Q ss_pred             ---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEe
Q 011368          348 ---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSH  399 (487)
Q Consensus       348 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~  399 (487)
                         +..+.. .+.               |++++|+++|+.|++| +....+--|-.
T Consensus       416 i~~l~~ls~-~Gf---------------VNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  416 INLLYSLSL-VGF---------------VNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             cceeeeccc-ccE---------------EEEEEEccCCCEEEEecccccccceeeE
Confidence               333331 121               2699999999976665 34444433433

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=208.42  Aligned_cols=245  Identities=19%  Similarity=0.319  Sum_probs=195.6

Q ss_pred             EEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           35 VSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        35 V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      +..+.|+. +.++||+++..|.|.+||+...-                        ..+.+..|..|+            
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------------rnk~l~~f~EH~------------  133 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------------RNKLLTVFNEHE------------  133 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc------------------------cchhhhHhhhhc------------
Confidence            44566764 45899999999999999987521                        122356788898            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..++++.|++ ....+|++|+.||+|++||++..+-...                                         
T Consensus       134 Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t-----------------------------------------  171 (839)
T KOG0269|consen  134 RSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKST-----------------------------------------  171 (839)
T ss_pred             cceeeeeecc-CCccEEEecCCCceEEEEeeeccccccc-----------------------------------------
Confidence            8999999985 5567999999999999999998764433                                         


Q ss_pred             ceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                            +.+....|+++.|+| .+..|+++ +.|.+++||++...++..       .+.+|.++|.|+.|+|++ .+||+
T Consensus       172 ------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------k~~AH~GpV~c~nwhPnr-~~lAT  237 (839)
T KOG0269|consen  172 ------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------KLTAHNGPVLCLNWHPNR-EWLAT  237 (839)
T ss_pred             ------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-------HhhcccCceEEEeecCCC-ceeee
Confidence                  256778899999999 57788888 999999999997776653       478999999999999988 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEe---CCeEEEEeCCCCCce
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD---YMNLKLWDIRMDSTP  347 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~---d~~i~iwd~~~~~~~  347 (487)
                      |+.|+.|+|||+.+.+..  ...++..              ..+|.++.|-|+..+ |++++   |-.|+|||++.+.-+
T Consensus       238 GGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  238 GGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             cCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            999999999999875422  2233333              478999999998765 44543   589999999988888


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..++..|...+               +.++|.. |...+.+++.||.|..-.+++.
T Consensus       302 ~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  302 YATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            99999998765               5888865 5667889999998876655554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=180.94  Aligned_cols=277  Identities=16%  Similarity=0.250  Sum_probs=212.4

Q ss_pred             CCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCC-----Ccccchhhhhccccc--------cccCC
Q 011368           22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP-----NQHISRSELEKQMDF--------TSTSH   88 (487)
Q Consensus        22 ~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~--------~~~~~   88 (487)
                      ..+.....+|.+.|+||+|++.+.++++++.|++-.||...-.-..|     .....-.+++..+..        .+..+
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            45566778899999999999999999999999999999833211111     111112223222221        11122


Q ss_pred             CcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccc
Q 011368           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (487)
Q Consensus        89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (487)
                      .-..++..|.+|.            +.|.+..|.  ..|+.+++++.|.+..+||+++++....                
T Consensus       260 tiRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~----------------  309 (481)
T KOG0300|consen  260 TIRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNI----------------  309 (481)
T ss_pred             eeeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceecc----------------
Confidence            2234678899998            889999995  6789999999999999999999987765                


Q ss_pred             cccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC
Q 011368          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  247 (487)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~  247 (487)
                                                     +.+|....+.++-+|..++++++ .|.+.++||++..-+.+.       
T Consensus       310 -------------------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~-------  351 (481)
T KOG0300|consen  310 -------------------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA-------  351 (481)
T ss_pred             -------------------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceee-------
Confidence                                           58999999999999999999999 999999999994444443       


Q ss_pred             CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368          248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  327 (487)
Q Consensus       248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~  327 (487)
                      .+++|...|+++.|..+  ..+++|+.|.+|++||+++.+..   +.++..              ..+++.++.+..+..
T Consensus       352 VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsp---lATIRt--------------dS~~NRvavs~g~~i  412 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSP---LATIRT--------------DSPANRVAVSKGHPI  412 (481)
T ss_pred             eecccccceeEEEEecC--CceeecCCCceEEEeeeccccCc---ceeeec--------------CCccceeEeecCCce
Confidence            47899999999999987  57999999999999999986543   244444              468999999988888


Q ss_pred             EEEEeC-CeEEEEeCCCCCceeeee-----ecccccccccccccCCCCcceeeEEEEcCCC--CEEEEEcCCCcEEEEEe
Q 011368          328 LLSRDY-MNLKLWDIRMDSTPVATF-----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHFATGSYSNLLRIFSH  399 (487)
Q Consensus       328 l~s~~d-~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--~~l~sg~~dg~i~iwd~  399 (487)
                      |+.-.| ..|++||+.  +..+..+     ++|...+               ++++|..+.  .-|++++.|..+.-|++
T Consensus       413 IAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  413 IAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             EEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccccCcccccccccccceeeeeEe
Confidence            888766 999999996  3434333     3555433               688998653  45889999999999998


Q ss_pred             CCC
Q 011368          400 GVG  402 (487)
Q Consensus       400 ~~~  402 (487)
                      ...
T Consensus       476 n~p  478 (481)
T KOG0300|consen  476 NTP  478 (481)
T ss_pred             ccc
Confidence            764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.7e-23  Score=162.52  Aligned_cols=308  Identities=15%  Similarity=0.189  Sum_probs=216.7

Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                      |+.+..++-...|.+++|+  |.|.+.+.|+..++++|-....-. +..-.+....+++                     
T Consensus        23 f~~i~~l~dsqairav~fh--p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~---------------------   79 (350)
T KOG0641|consen   23 FEAINILEDSQAIRAVAFH--PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS---------------------   79 (350)
T ss_pred             eEEEEEecchhheeeEEec--CCCceEEeccCCceEEEEccccccCcccccccccCCCe---------------------
Confidence            4455555555889999995  679999999999999987543211 0000111111100                     


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                ..+.+  ...|.+.|+|.+|+|+|++|++| .|++|++..++... +..+  .....+.-|.+.|..++|
T Consensus        80 ----------v~~kr--~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt-~~~~--g~dle~nmhdgtirdl~f  144 (350)
T KOG0641|consen   80 ----------VLCKR--NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADT-CNAT--GHDLEFNMHDGTIRDLAF  144 (350)
T ss_pred             ----------EEeee--ccccCccEEEEEecCccCeEEecCCCceEEEEeccccc-cccc--CcceeeeecCCceeeeEE
Confidence                      01222  25789999999999999999999 99999998776322 1110  111245678999999999


Q ss_pred             ecC---CCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeE
Q 011368          262 HPI---YCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  336 (487)
Q Consensus       262 ~p~---~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i  336 (487)
                      -.+   +..+|++++. |..|.+-|...++..    +.+.+             |.+-|.++ ++-+|-++++|+ |.+|
T Consensus       145 ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~----~a~sg-------------htghilal-yswn~~m~~sgsqdkti  206 (350)
T KOG0641|consen  145 LDDPESGGAILASAGAGDCKIYITDCGRGQGF----HALSG-------------HTGHILAL-YSWNGAMFASGSQDKTI  206 (350)
T ss_pred             ecCCCcCceEEEecCCCcceEEEeecCCCCcc----eeecC-------------CcccEEEE-EEecCcEEEccCCCceE
Confidence            743   2267777664 778888888887654    55555             46667665 344578889987 5999


Q ss_pred             EEEeCCCCCceeeeeecc--cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          337 KLWDIRMDSTPVATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      ++||++. ..++.++...  ....          .-..|.+++..|.|++|++|-.|....+||++.+ ..++.+..|..
T Consensus       207 rfwdlrv-~~~v~~l~~~~~~~gl----------essavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~phsa  274 (350)
T KOG0641|consen  207 RFWDLRV-NSCVNTLDNDFHDGGL----------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSA  274 (350)
T ss_pred             EEEeeec-cceeeeccCcccCCCc----------ccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeCCCcc
Confidence            9999997 7777766432  2111          1113468999999999999999999999999877 56889999999


Q ss_pred             ccccceEeeCCccccccccceeeecccce-ecCCCCCcc-c-----cccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          415 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-E-----LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~-~-----~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                      .|+++-|+|  ...+     +.+++.|.+ ++-+....+ .     ....|..++..+.|+|..--+.+.+ +....+|.
T Consensus       275 dir~vrfsp--~a~y-----llt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  275 DIRCVRFSP--GAHY-----LLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             ceeEEEeCC--CceE-----EEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence            999999999  4566     899999988 776332222 1     1236888888999999886666666 55577774

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=6.9e-24  Score=185.45  Aligned_cols=261  Identities=18%  Similarity=0.260  Sum_probs=194.1

Q ss_pred             ccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        31 h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      |..+|++++|+|..  +++|+|+..|+|-+||+.+.+.                       ...-+..+..|.       
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs-------  234 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS-------  234 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence            57899999999965  5889999999999999975443                       444567788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           .+|.++.|+| .+...+++.+.||+|++-|++++....+..                                  
T Consensus       235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s----------------------------------  274 (498)
T KOG4328|consen  235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLS----------------------------------  274 (498)
T ss_pred             -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhh----------------------------------
Confidence                 9999999987 455678999999999999998875443311                                  


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +......+..+.|+.+...++.+ .=|...+||+++.+.....       +.-|...|.+|+++|..+.
T Consensus       275 -----------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  275 -----------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             -----------cCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhhcccceeecCCCCch
Confidence                       11234456778888877777777 6669999999987765543       4557779999999999989


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeCCeEEEEeCC---C
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKLWDIR---M  343 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d~~i~iwd~~---~  343 (487)
                      +||+++.|++.+|||+++-......  .+.           ...|...|.+..|||.+-.|++ +.|+.|+|||..   .
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp--~ls-----------t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASP--FLS-----------TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCc--cee-----------cccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence            9999999999999999974322110  111           2457889999999998776776 457999999983   1


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ...+...+. |...-.         --.......|.|+..+|++|-.-..|-|+|-+.+
T Consensus       404 ~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  404 KDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             cCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            133344433 221100         0001137899999999999999999999997766

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-23  Score=182.88  Aligned_cols=282  Identities=17%  Similarity=0.227  Sum_probs=209.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+|+++.|+|....|.+++.||+++||.++.....                         .+.++.-..          
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~----------  257 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK----------  257 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence            568999999999999999999999999999876542                         223333333          


Q ss_pred             cccceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                        .+|.+.+|.  |+|. .+++++....++.||+.+.+..++...                                   
T Consensus       258 --fPi~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-----------------------------------  298 (514)
T KOG2055|consen  258 --FPIQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-----------------------------------  298 (514)
T ss_pred             --Cccceeeec--CCCceEEEecccceEEEEeeccccccccccCC-----------------------------------
Confidence              679999995  6787 889999999999999998887665321                                   


Q ss_pred             eccceeeeecccC-CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAH-DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                .++ ...+.....+|++++|+.. ..|.|.+....++.. +..+        ...+.|..+.|+.++ +.
T Consensus       299 ----------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~--------KieG~v~~~~fsSds-k~  358 (514)
T KOG2055|consen  299 ----------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSF--------KIEGVVSDFTFSSDS-KE  358 (514)
T ss_pred             ----------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hhee--------eeccEEeeEEEecCC-cE
Confidence                      233 3457778889999999998 999999998885443 2221        234678999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccce--eEEEEcCCCCEEEEEeC-CeEEEEeCCCC-
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLLSRDY-MNLKLWDIRMD-  344 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v--~~v~~s~~~~~l~s~~d-~~i~iwd~~~~-  344 (487)
                      |++++.+|.|.+||+++..++    +.|..              .+.|  +.++.++++.|||+|++ |.|.|||..+- 
T Consensus       359 l~~~~~~GeV~v~nl~~~~~~----~rf~D--------------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  359 LLASGGTGEVYVWNLRQNSCL----HRFVD--------------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             EEEEcCCceEEEEecCCcceE----EEEee--------------cCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence            999999999999999998654    66665              2333  56777899999999998 99999996531 


Q ss_pred             ----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC--CCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368          345 ----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       345 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                          .+++..+..-..               .|+++.|+||++.||.+|.  +..+++-.+.+.                
T Consensus       421 ~s~~PkPik~~dNLtt---------------~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~----------------  469 (514)
T KOG2055|consen  421 ASTNPKPIKTVDNLTT---------------AITSLQFNHDAQILAIASRVKKNALRLVHVPSC----------------  469 (514)
T ss_pred             ccCCCCchhhhhhhhe---------------eeeeeeeCcchhhhhhhhhccccceEEEeccce----------------
Confidence                233333322222               3469999999999988875  467888777643                


Q ss_pred             ceEe--eCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          419 PILQ--AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       419 ~~~~--~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      -.|+  |..+                              ..-..|++|+|||.+-+||+|...+ +.+|.
T Consensus       470 TVFsNfP~~n------------------------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  470 TVFSNFPTSN------------------------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             eeeccCCCCC------------------------------CcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            1122  1111                              1223789999999999999999665 77774

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=195.88  Aligned_cols=330  Identities=14%  Similarity=0.162  Sum_probs=238.6

Q ss_pred             ccccc-CcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           28 ELQDV-DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        28 ~~~h~-~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      .+.|. +.|+.++|..||+ .+|+|+..|.+.+||++..+.+                          ......|.    
T Consensus       239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------------~v~~nah~----  288 (910)
T KOG1539|consen  239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------------NVTRNAHY----  288 (910)
T ss_pred             EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--------------------------eeeecccc----
Confidence            34454 7999999999995 5677888899999999877653                          34445777    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc--eeEe-eecCCCCceeeeeccccccccccccCCCCc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                              +.|....|+  +....+++++.|+.+++|=.+++.  ...+ ...++..+..++.|+...+.++.+...+..
T Consensus       289 --------~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt  358 (910)
T KOG1539|consen  289 --------GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT  358 (910)
T ss_pred             --------CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence                    889999996  566789999999999999665332  2211 233444555666666555544444432210


Q ss_pred             cee-----------------------------------eee--------------------------eeeccceee-eec
Q 011368          183 AHG-----------------------------------YHL--------------------------EWTENMATK-VYP  200 (487)
Q Consensus       183 ~~~-----------------------------------~~~--------------------------~~~~~~~~~-~~~  200 (487)
                      ...                                   +..                          .|+-..... .+.
T Consensus       359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~  438 (910)
T KOG1539|consen  359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV  438 (910)
T ss_pred             hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence            000                                   000                          022111110 111


Q ss_pred             ------ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          201 ------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       201 ------~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                            ......+++++.++.|++.+.| ..|.|-+|+++++ .....+    ..-+.|..+|+.++.+..+ +.+++++
T Consensus       439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-i~r~sf----~~~~ah~~~V~gla~D~~n-~~~vsa~  512 (910)
T KOG1539|consen  439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-IHRKSF----GDSPAHKGEVTGLAVDGTN-RLLVSAG  512 (910)
T ss_pred             ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-eeeccc----ccCccccCceeEEEecCCC-ceEEEcc
Confidence                  1234678899999999999999 9999999999944 332221    1225899999999999988 9999999


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeee
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~  352 (487)
                      .+|.+.+||...+.+.    ..+..              ...+..+.++.....++.+ +|-.|+++|..+ .+.++.+.
T Consensus       513 ~~Gilkfw~f~~k~l~----~~l~l--------------~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~  573 (910)
T KOG1539|consen  513 ADGILKFWDFKKKVLK----KSLRL--------------GSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFW  573 (910)
T ss_pred             CcceEEEEecCCccee----eeecc--------------CCCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhh
Confidence            9999999999987644    44444              3578888888888788776 559999999998 88999999


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccc
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  432 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  432 (487)
                      +|.+.+               ++++|||||++|++++.|++|++||+.++... -.+ .-..+...+.++|  ++.+   
T Consensus       574 gh~nri---------------td~~FS~DgrWlisasmD~tIr~wDlpt~~lI-D~~-~vd~~~~sls~SP--ngD~---  631 (910)
T KOG1539|consen  574 GHGNRI---------------TDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-DGL-LVDSPCTSLSFSP--NGDF---  631 (910)
T ss_pred             ccccce---------------eeeEeCCCCcEEEEeecCCcEEEEeccCccee-eeE-ecCCcceeeEECC--CCCE---
Confidence            999866               69999999999999999999999999998442 222 2345667888888  6666   


Q ss_pred             cceeeecccce--ecC
Q 011368          433 SNLTRGLYRQA--HEN  446 (487)
Q Consensus       433 ~~l~~g~~~~~--~~w  446 (487)
                        |++...|..  .+|
T Consensus       632 --LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  632 --LATVHVDQNGIYLW  645 (910)
T ss_pred             --EEEEEecCceEEEE
Confidence              899888754  899

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.4e-24  Score=198.13  Aligned_cols=286  Identities=15%  Similarity=0.200  Sum_probs=211.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ....++|+.+++-..|+.+++. .+.||.+......                       .++...++.-..         
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn---------   85 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQN---------   85 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeecccccc---------
Confidence            3457788889998888888764 6888887654321                       111111122110         


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---ceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                      .--.+..|.|. +-..++|++++..|.|.+||+...   +...                                     
T Consensus        86 ~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------------------------  127 (839)
T KOG0269|consen   86 KFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------------------------  127 (839)
T ss_pred             eeeehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhh-------------------------------------
Confidence            01456778897 567889999999999999999862   2111                                     


Q ss_pred             eeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                .+..|...++++.|++ ...+|++| .||.|++||++......        ++.+....|+.|+|+|..+
T Consensus       128 ----------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~--------t~~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  128 ----------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS--------TFRSNSESIRDVKFSPGYG  189 (839)
T ss_pred             ----------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--------cccccchhhhceeeccCCC
Confidence                      1489999999999987 56788888 99999999999544322        3456778899999999877


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ..|+++.+.|.+++||+|....+.   ..+..             |.++|.++.|+|++.+||+|+ |+.|+|||+.. .
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~---~k~~A-------------H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~-~  252 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCE---KKLTA-------------HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD-S  252 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHH---HHhhc-------------ccCceEEEeecCCCceeeecCCCccEEEEeccC-C
Confidence            999999999999999999876442   34444             689999999999999999986 79999999974 3


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      +.......+..              ..+..+.|-|+.++ |++++  .|..|+|||++..-....++..|...++.+++.
T Consensus       253 ~~~~~~tInTi--------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  253 RAKPKHTINTI--------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             CccceeEEeec--------------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence            32222222221              12258999997665 55554  578999999998877788999999999999997


Q ss_pred             eCCccccccccceeeecccce
Q 011368          423 AAPRARRSSLSNLTRGLYRQA  443 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~~~  443 (487)
                      .. +...     |.+++.|+.
T Consensus       319 ~~-d~~~-----l~s~sKD~t  333 (839)
T KOG0269|consen  319 SG-DRIN-----LWSCSKDGT  333 (839)
T ss_pred             CC-Ccee-----eEeecCccH
Confidence            63 4444     788888876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=198.36  Aligned_cols=271  Identities=17%  Similarity=0.211  Sum_probs=202.6

Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (487)
                      .+... .|++++|++|++||.|++|++....-....                                        .+..
T Consensus        29 ~Lq~d-a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~----------------------------------------~~~a   67 (735)
T KOG0308|consen   29 ALQLD-APNGRYLFTGGRDGIIRLWSVTQDSNEPST----------------------------------------PYIA   67 (735)
T ss_pred             hcccc-CCCCceEEecCCCceEEEeccccccCCccc----------------------------------------chhh
Confidence            34444 367888999999999999998754321110                                        0011


Q ss_pred             eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEE-ecCCCCEEEEEeC
Q 011368          198 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF-HPIYCNLLAYSSS  274 (487)
Q Consensus       198 ~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~-~p~~~~~l~~~~~  274 (487)
                       .+..|.+.|+++....+++.|+++ .|-+|++|+..... -+.       .++..|.+.|.|+++ .++. .++|+|+-
T Consensus        68 -sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~-------stir~H~DYVkcla~~ak~~-~lvaSgGL  138 (735)
T KOG0308|consen   68 -SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM-------STIRTHKDYVKCLAYIAKNN-ELVASGGL  138 (735)
T ss_pred             -hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------hhhhcccchheeeeecccCc-eeEEecCC
Confidence             137899999999999999999999 99999999998554 233       246789999999999 6776 89999999


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCcccccc-ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeee
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~  352 (487)
                      |+.|.+||+.++..  ..+..++.     .....+. ++..+|.+++.++.|..+++|+ .+.+++||.++ .+.+..++
T Consensus       139 D~~IflWDin~~~~--~l~~s~n~-----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLr  210 (735)
T KOG0308|consen  139 DRKIFLWDINTGTA--TLVASFNN-----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLR  210 (735)
T ss_pred             CccEEEEEccCcch--hhhhhccc-----cccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeee
Confidence            99999999998732  00122221     1111122 6788999999999998888876 49999999998 88888889


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccc
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  432 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  432 (487)
                      +|...+               ..+-.++||..++++|.||+|++||+..+ .++.++..|.+.|+++..+|  +...   
T Consensus       211 GHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~--sf~~---  269 (735)
T KOG0308|consen  211 GHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSP--SFTH---  269 (735)
T ss_pred             ccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCC--Ccce---
Confidence            999865               68999999999999999999999999876 66889999999999999887  3444   


Q ss_pred             cceeeecccce-ecCCCC--CccccccccCCCeEEEEEcC
Q 011368          433 SNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHP  469 (487)
Q Consensus       433 ~~l~~g~~~~~-~~w~~~--~~~~~~~~~~~~v~~~~~sp  469 (487)
                        +-+|++|+. ..=...  ........-+.+|.++..+-
T Consensus       270 --vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~  307 (735)
T KOG0308|consen  270 --VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE  307 (735)
T ss_pred             --EEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc
Confidence              788888887 333222  11122224445555555553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3.4e-23  Score=171.85  Aligned_cols=211  Identities=14%  Similarity=0.174  Sum_probs=157.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-ceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      +.|.+|+|+| ....++++++.|++||+|+++.. .....                                        
T Consensus        28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------------------------------   66 (347)
T KOG0647|consen   28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------------------------------   66 (347)
T ss_pred             cchheeEecc-ccCceEEecccCCceEEEEEecCCcccch----------------------------------------
Confidence            8899999976 35567778999999999999873 32211                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC-CCEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLA  270 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~  270 (487)
                            ....|.++|.+++|+.||..+++| .|+.+++||+.++ +..        .+..|..+|.++.|-+.. ...|+
T Consensus        67 ------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~--------~v~~Hd~pvkt~~wv~~~~~~cl~  131 (347)
T KOG0647|consen   67 ------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVS--------QVAAHDAPVKTCHWVPGMNYQCLV  131 (347)
T ss_pred             ------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Cee--------eeeecccceeEEEEecCCCcceeE
Confidence                  136899999999999999999999 9999999999965 433        346899999999998765 14899


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~  349 (487)
                      +||.|.+|+.||.++...+    ..+..              ...+.++..-.  .+++.+ .+..|.+|+++.+....+
T Consensus       132 TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k  191 (347)
T KOG0647|consen  132 TGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFK  191 (347)
T ss_pred             ecccccceeecccCCCCee----eeeec--------------cceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhh
Confidence            9999999999999987644    44444              34566665542  355554 569999999975333333


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC-CceeEEEeccCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGKN  414 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~  414 (487)
                      .+...-..              .+++++..+|....+.|+-.|.+.|..+..+ .....++++|+.
T Consensus       192 ~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  192 RIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             hhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence            33222211              2268888888888899999999999999874 234668888875

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.8e-23  Score=169.83  Aligned_cols=271  Identities=12%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+-|.|+.|.+.|+++|+|+.|++|+|||.+...                       .....-...+.|.       
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-----------------------~~W~~Ts~Wrah~-------   59 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-----------------------GTWSCTSSWRAHD-------   59 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-----------------------CceEEeeeEEecC-------
Confidence            3578899999999999999999999999999975443                       2667778899999       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           +.|..|.|.+..=|+.+|+++.|+++.||.-.......-                                  ..
T Consensus        60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~----------------------------------~~  100 (361)
T KOG2445|consen   60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH----------------------------------GR  100 (361)
T ss_pred             -----CcEEEEEecCccccceEEEEecCCceeeeeecccccccc----------------------------------cc
Confidence                 999999998655689999999999999997542211100                                  00


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCcee--EEe---ecCCCCCCCCCCcEEEEE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCF--NIV---DMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~--~~~---~~~~~~~~~~~~~v~~v~  260 (487)
                      .|    ..+..+....+.|+++.|.|.  |-.+|++ .||.++||+.-......  .+.   ..-+.....+.....|+.
T Consensus       101 ~W----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs  176 (361)
T KOG2445|consen  101 RW----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS  176 (361)
T ss_pred             ee----EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence            01    122224667888999999984  7788998 99999999876433211  000   000012224556678999


Q ss_pred             EecCC--CCEEEEEeCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----CEEE
Q 011368          261 FHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----QHLL  329 (487)
Q Consensus       261 ~~p~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~  329 (487)
                      |+|..  +.+||+|+.+     +.+.||...........             ...+.+|..+|++++|.|+-    ..||
T Consensus       177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k-------------va~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK-------------VAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             eccccccCceEEEEcccCCccccceEEEEecCCcceeee-------------ehhcCCCCCcceeeeeccccCCceeeEE
Confidence            99742  3688888876     57888876654311111             11234678999999999972    3566


Q ss_pred             EEe-CCeEEEEeCCCCC-------------------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368          330 SRD-YMNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  389 (487)
Q Consensus       330 s~~-d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~  389 (487)
                      +++ || |+||.++...                   +.+..+..|+..               |+.+.|+-.|..|++.|
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~---------------VWrv~wNmtGtiLsStG  307 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE---------------VWRVRWNMTGTILSSTG  307 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc---------------eEEEEEeeeeeEEeecC
Confidence            665 57 9999987311                   112233444443               37999999999999999


Q ss_pred             CCCcEEEEEeCC
Q 011368          390 YSNLLRIFSHGV  401 (487)
Q Consensus       390 ~dg~i~iwd~~~  401 (487)
                      .||.|++|...-
T Consensus       308 dDG~VRLWkany  319 (361)
T KOG2445|consen  308 DDGCVRLWKANY  319 (361)
T ss_pred             CCceeeehhhhh
Confidence            999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=177.44  Aligned_cols=223  Identities=18%  Similarity=0.221  Sum_probs=166.3

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.++.++-.+..+..+.++-+..|.|+||++..... .+.....                .             ......
T Consensus       152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~-~l~~~~~----------------~-------------~~~s~~  201 (440)
T KOG0302|consen  152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN-ALSEPGL----------------E-------------VKDSEF  201 (440)
T ss_pred             cccceeeecccCCcceeeeecccCcEEEEEchhhhh-hhcCccc----------------c-------------cccccc
Confidence            777777776545666777778999999999864311 0000000                0             000112


Q ss_pred             ceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                      +++.++ .+|...=+.++|||- ...+++| .-+.|++|...++.-.+.     +..+.+|...|..++|+|.....|++
T Consensus       202 ~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----~~Pf~gH~~SVEDLqWSptE~~vfaS  275 (440)
T KOG0302|consen  202 RPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----QRPFTGHTKSVEDLQWSPTEDGVFAS  275 (440)
T ss_pred             CceEEe-cccCccceeeecccccccccccCccccceEeeeeccCceeec-----CccccccccchhhhccCCccCceEEe
Confidence            233333 789999999999993 3357888 888999999986443322     34677899999999999988789999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC--CCcee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPV  348 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~--~~~~~  348 (487)
                      |+-||+|+|||+|.+....  ....+.             |.+.|+.|.|+.+-.+|++|+| |+++|||++.  .+.++
T Consensus       276 cS~DgsIrIWDiRs~~~~~--~~~~kA-------------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV  340 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPKKA--AVSTKA-------------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV  340 (440)
T ss_pred             eecCceEEEEEecCCCccc--eeEeec-------------cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc
Confidence            9999999999999974211  012233             5789999999998889999976 9999999985  35788


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..++.|..++               +++.|+| +...|++++.|..|.|||+...
T Consensus       341 A~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  341 ATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            9999999876               6999999 4667889999999999999854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=2.3e-23  Score=189.29  Aligned_cols=304  Identities=18%  Similarity=0.208  Sum_probs=216.1

Q ss_pred             EEEEEcC---CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           36 SAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        36 ~~~~~s~---~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      .+..|++   ....||.+..||.|.++|.....-                     .++.+.+..+.+|.           
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~-----------  100 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK-----------  100 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc-----------
Confidence            3466765   336789999999999999764421                     11223345677788           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       +.|..+.|.  |....|++++.|.++++||+.++++....                                       
T Consensus       101 -nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~---------------------------------------  138 (720)
T KOG0321|consen  101 -NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR---------------------------------------  138 (720)
T ss_pred             -ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce---------------------------------------
Confidence             999999995  56678999999999999999988765431                                       


Q ss_pred             cceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCce------eEEe---ec-----C-----CCCCCC
Q 011368          193 NMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC------FNIV---DM-----K-----PSNMDD  251 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~------~~~~---~~-----~-----~~~~~~  251 (487)
                            .+.+|...|.+++|.|. ...|++| .||.|.|||++.....      ..+.   ..     +     .+....
T Consensus       139 ------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  139 ------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence                  13799999999999995 4567778 9999999999854310      0000   00     0     012234


Q ss_pred             CCCcEEE---EEEecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCcccccccc---ccceeEEEEcCC
Q 011368          252 LTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI---IASISDIKFAND  324 (487)
Q Consensus       252 ~~~~v~~---v~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---~~~v~~v~~s~~  324 (487)
                      +...|.+   +.+..|. ..||+++. |+.|++||++......      ..   .+.....+.-|   .-.+.++.....
T Consensus       213 ~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~------r~---ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAY------RQ---EPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             ccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccccc------cc---CCCcccCccCcccceeeeEEEEecCC
Confidence            4555555   5566676 88999888 9999999999865321      11   01111111112   345677777777


Q ss_pred             CCEEEE-EeCCeEEEEeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          325 GQHLLS-RDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       325 ~~~l~s-~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      |.+|++ |.|+.|++|++.... .++..+.++...           .++  ..-..+||+.+|++|+.|...++|.+.+.
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-----------sf~--vks~lSpd~~~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-----------SFY--VKSELSPDDCSLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCchhhccCcccc-----------eee--eeeecCCCCceEeccCCCcceeeeeecCc
Confidence            777764 689999999997632 345555554432           111  35567899999999999999999999999


Q ss_pred             CceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          403 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       403 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      +.....+.+|.-.|..+.+.|.....      +++++.|-. ++|.+
T Consensus       350 e~~~~~l~Ght~eVt~V~w~pS~~t~------v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  350 EAPPALLLGHTREVTTVRWLPSATTP------VATCSDDFRVKIWRL  390 (720)
T ss_pred             cCChhhhhCcceEEEEEeeccccCCC------ceeeccCcceEEEec
Confidence            88889999999999999999986666      577788888 99944

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.6e-22  Score=167.22  Aligned_cols=305  Identities=13%  Similarity=0.165  Sum_probs=202.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.|+++..-+ ..|+++++|+.||.|.+||++.........+-... ++                               
T Consensus        44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~-~c-------------------------------   90 (397)
T KOG4283|consen   44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH-KC-------------------------------   90 (397)
T ss_pred             Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceehe-ee-------------------------------
Confidence            8899999975 67899999999999999999864321110000000 00                               


Q ss_pred             ceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC--CEE
Q 011368          194 MATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLL  269 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l  269 (487)
                      ...+....+|...|..+.|-| |.-++.++ .|.++++||.++.+.... +        ...+.|++-+++|-..  -++
T Consensus        91 ~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-F--------~me~~VYshamSp~a~sHcLi  161 (397)
T KOG4283|consen   91 IVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-F--------KMEGKVYSHAMSPMAMSHCLI  161 (397)
T ss_pred             eccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE-e--------ecCceeehhhcChhhhcceEE
Confidence            001111268999999999988 55566677 999999999996544332 1        2335577777777431  478


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEEeCCCCCce
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iwd~~~~~~~  347 (487)
                      |+|..+-.|++.|+.+|...    +++.+             |...|.++.|+|..+++++ |+ ||.|++||++....+
T Consensus       162 A~gtr~~~VrLCDi~SGs~s----H~LsG-------------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc  224 (397)
T KOG4283|consen  162 AAGTRDVQVRLCDIASGSFS----HTLSG-------------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC  224 (397)
T ss_pred             EEecCCCcEEEEeccCCcce----eeecc-------------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce
Confidence            88888999999999998755    66666             5899999999999998764 54 799999999976678


Q ss_pred             eeeeeccccccccccc--ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe--ccCCccccceEee
Q 011368          348 VATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQA  423 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~  423 (487)
                      ...+..|+...+....  .-+.+.   +.+++|+.|+.++++.+.|..+++|+..+|+.....+.  .|... ...++.-
T Consensus       225 f~~lD~hn~k~~p~~~~n~ah~gk---vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~  300 (397)
T KOG4283|consen  225 FRVLDQHNTKRPPILKTNTAHYGK---VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHI  300 (397)
T ss_pred             eEEeecccCccCccccccccccce---eeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-ccceEEE
Confidence            8888888754333222  112222   36999999999999999999999999998865433221  11111 1111110


Q ss_pred             CCccccccccceeee-cccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEe
Q 011368          424 APRARRSSLSNLTRG-LYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY  486 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g-~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~  486 (487)
                      . .+    ....+++ -.++. .+.  -.+..+.....|-+.|.+.++.|+-+.+.++.- .+++.|.
T Consensus       301 ~-~~----~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  301 Q-SM----DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             e-ec----ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence            0 00    0001111 11122 333  222334445567889999999999999999884 4588875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=173.59  Aligned_cols=228  Identities=16%  Similarity=0.236  Sum_probs=169.0

Q ss_pred             ccccccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           27 EELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      +.+.|.+.++-+.-++-+  .+.|+=+..|.|.||++...-         +-++.++.  .......+++.++.+|.   
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l---------~~l~~~~~--~~~~s~~~Pl~t~~ghk---  211 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL---------NALSEPGL--EVKDSEFRPLFTFNGHK---  211 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh---------hhhcCccc--cccccccCceEEecccC---
Confidence            456677888888877765  455566689999999976431         11221111  11224667788999998   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               ..=..++|+|...| .|++|..-+.|++|...++....-.                               
T Consensus       212 ---------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------  250 (440)
T KOG0302|consen  212 ---------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------  250 (440)
T ss_pred             ---------ccceeeeccccccc-ccccCccccceEeeeeccCceeecC-------------------------------
Confidence                     66799999875444 5788888889999999987754321                               


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                   ..+.+|...|..++|||. ...|++| .|++|+|||++...+...+      ..+.|.+.|+-+.|+
T Consensus       251 -------------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~------~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  251 -------------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV------STKAHNSDVNVISWN  311 (440)
T ss_pred             -------------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee------EeeccCCceeeEEcc
Confidence                         013679999999999995 5678888 9999999999965433322      237899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC--EEEEEeCCeEEEEe
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWD  340 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~d~~i~iwd  340 (487)
                      ..- .+||+|+.||+++|||+|+-+.- +.+..|+-             |..+|+++.|+|...  ++++|+|.+|.+||
T Consensus       312 r~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~-------------Hk~pItsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  312 RRE-PLLASGGDDGTLSIWDLRQFKSG-QPVATFKY-------------HKAPITSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             CCc-ceeeecCCCceEEEEEhhhccCC-CcceeEEe-------------ccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence            998 69999999999999999985422 33344444             689999999998644  44456789999999


Q ss_pred             CCC
Q 011368          341 IRM  343 (487)
Q Consensus       341 ~~~  343 (487)
                      +..
T Consensus       377 lsv  379 (440)
T KOG0302|consen  377 LSV  379 (440)
T ss_pred             eec
Confidence            975

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=5.5e-21  Score=175.37  Aligned_cols=233  Identities=9%  Similarity=0.116  Sum_probs=158.2

Q ss_pred             CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (487)
Q Consensus        44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~  123 (487)
                      ++.+++++.|+.|++||..+++.                           ...+..+.             .+..++|  
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~--   38 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITL--   38 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEE--
Confidence            35788999999999999877653                           34555443             3677999  


Q ss_pred             cCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeeccc
Q 011368          124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHA  202 (487)
Q Consensus       124 ~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (487)
                      +++++.+ ++++.++.|++||..+++....                                               +..
T Consensus        39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-----------------------------------------------~~~   71 (300)
T TIGR03866        39 SKDGKLLYVCASDSDTIQVIDLATGEVIGT-----------------------------------------------LPS   71 (300)
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCcEEEe-----------------------------------------------ccC
Confidence            5788766 5667889999999988765432                                               122


Q ss_pred             CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-eEE
Q 011368          203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVR  279 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-~i~  279 (487)
                      + ..+..++|+|+++.++++  .++.|++||+.+. ..+..+       . +...+.+++|+|++ .++++++.++ .+.
T Consensus        72 ~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~-------~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~  140 (300)
T TIGR03866        72 G-PDPELFALHPNGKILYIANEDDNLVTVIDIETR-KVLAEI-------P-VGVEPEGMAVSPDG-KIVVNTSETTNMAH  140 (300)
T ss_pred             C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEe-------e-CCCCcceEEECCCC-CEEEEEecCCCeEE
Confidence            2 224678899999977654  6899999999853 333322       1 22346789999999 8888888765 567


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e-CCeEEEEeCCCCCceeeeeeccccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      +||.++++..    .....              ......++|+|+|++|+++ . ++.|++||+++ ++.+..+..+...
T Consensus       141 ~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~  201 (300)
T TIGR03866       141 FIDTKTYEIV----DNVLV--------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPG  201 (300)
T ss_pred             EEeCCCCeEE----EEEEc--------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccc
Confidence            7898876532    11111              1245678999999988654 3 59999999987 6665555432111


Q ss_pred             ccccccccCCCCcceeeEEEEcCCCCEEEE-EcCCCcEEEEEeCCCC
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGS  403 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-g~~dg~i~iwd~~~~~  403 (487)
                      ...       ... ....++|+|+++++++ .+.++.+.+||+++++
T Consensus       202 ~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~  240 (300)
T TIGR03866       202 VHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE  240 (300)
T ss_pred             ccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            000       000 1136889999998654 4556789999998763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.5e-22  Score=166.41  Aligned_cols=267  Identities=18%  Similarity=0.259  Sum_probs=178.4

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      +..+++|.            +.|++++|  +.||++|++++.|++|++|++++-....-                     
T Consensus        79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---------------------  123 (420)
T KOG2096|consen   79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH---------------------  123 (420)
T ss_pred             hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh---------------------
Confidence            46789999            88999999  68999999999999999999987432110                     


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCC---ceeEEeecCCCC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD---QCFNIVDMKPSN  248 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~---~~~~~~~~~~~~  248 (487)
                                          ++.+.  .-.-+.-+.+.|.||-+-++.+  ...++++|.+....   .....+......
T Consensus       124 --------------------r~~R~--nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~  181 (420)
T KOG2096|consen  124 --------------------RCIRQ--NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLE  181 (420)
T ss_pred             --------------------hHhhc--cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccc
Confidence                                11111  1111245778999997766664  78899999876322   111111111011


Q ss_pred             C-CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368          249 M-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  327 (487)
Q Consensus       249 ~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~  327 (487)
                      + +.|.-.+-.+-..-.+ .+|++++.|..|.||+++ |+.+    ..+..             ....-...+.||+|++
T Consensus       182 f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  182 FERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQSSNYDAAVSPDGRF  242 (420)
T ss_pred             cchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------ccccccceeeCCCCcE
Confidence            1 2345556666666666 999999999999999999 5443    33322             1234567889999999


Q ss_pred             EEEEeC-CeEEEEeCCCC--C-----ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          328 LLSRDY-MNLKLWDIRMD--S-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       328 l~s~~d-~~i~iwd~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      ++++.- -.|++|.+-..  +     ..+..+++|...+               +.++||++.+.+++.+.||+++|||.
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCcceeEEEecCCcEEEeec
Confidence            999875 88999987431  1     2456778888755               69999999999999999999999998


Q ss_pred             CCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368          400 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       400 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~  479 (487)
                      +-..+      ..            .|.++     |-.|+.-            ..-.-..++ .++.+|.|+.||.+..
T Consensus       308 dVrY~------~~------------qDpk~-----Lk~g~~p------------l~aag~~p~-RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  308 DVRYE------AG------------QDPKI-----LKEGSAP------------LHAAGSEPV-RLELSPSGDSLAVSFG  351 (420)
T ss_pred             cceEe------cC------------CCchH-----hhcCCcc------------hhhcCCCce-EEEeCCCCcEEEeecC
Confidence            63211      11            11111     1111000            000011234 7899999999999988


Q ss_pred             CeEEEEeC
Q 011368          480 NSLFFHYA  487 (487)
Q Consensus       480 ~~~~i~~~  487 (487)
                      ..+.+|.+
T Consensus       352 s~l~~~~s  359 (420)
T KOG2096|consen  352 SDLKVFAS  359 (420)
T ss_pred             CceEEEEc
Confidence            88888763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-21  Score=163.46  Aligned_cols=277  Identities=14%  Similarity=0.127  Sum_probs=181.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +-|+++.|  ..-|+++++|+.|++++|||.....-...                                         
T Consensus        14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~-----------------------------------------   50 (361)
T KOG2445|consen   14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWS-----------------------------------------   50 (361)
T ss_pred             ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceE-----------------------------------------
Confidence            77999999  57799999999999999999754332111                                         


Q ss_pred             ceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCC-----CceeEEeecCCCCCCCCCCcEEEEEEecC-
Q 011368          194 MATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPI-  264 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-  264 (487)
                       +... ...|.+.|..+.|.+  -|+.+|+| .|+++.||.-...     +.....    ..++......|+.+.|.|. 
T Consensus        51 -~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~----~ttl~DsrssV~DV~FaP~h  124 (361)
T KOG2445|consen   51 -CTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR----RTTLVDSRSSVTDVKFAPKH  124 (361)
T ss_pred             -Eeee-EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE----EEEeecCCcceeEEEecchh
Confidence             1111 278999999999954  39999999 9999999976311     111111    1235566778999999985 


Q ss_pred             -CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEEEEEeC------C
Q 011368          265 -YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRDY------M  334 (487)
Q Consensus       265 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~s~~d------~  334 (487)
                       | -.||+++.||.+|||+.-....+    ..+....+-.........+.....|+.|+|.   ..+|+.|++      +
T Consensus       125 lG-LklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~  199 (361)
T KOG2445|consen  125 LG-LKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN  199 (361)
T ss_pred             cc-eEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence             5 78999999999999987664322    2222211111111222345678899999974   457888865      4


Q ss_pred             eEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCC----CCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          335 NLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       335 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      .++||.....+   ..+..+..|..++               ++++|.|+    -..||+++.|| |+||++......+ 
T Consensus       200 ~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i-  262 (361)
T KOG2445|consen  200 KVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI-  262 (361)
T ss_pred             ceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh-
Confidence            89999876533   2344556666655               69999995    35799999999 9999998532111 


Q ss_pred             EEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      .-+.-..        |..-+.+                  .-+.+..+-+|...|..+.|+-.|..|+++++|| +.+|.
T Consensus       263 ~~ee~~~--------~~~~~~l------------------~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  263 EEEEVLA--------PDLMTDL------------------PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             hhhcccC--------CCCcccc------------------ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            0000000        0000000                  0012233446777888888888888888777665 77775


Q ss_pred             C
Q 011368          487 A  487 (487)
Q Consensus       487 ~  487 (487)
                      +
T Consensus       317 a  317 (361)
T KOG2445|consen  317 A  317 (361)
T ss_pred             h
Confidence            3

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=6.2e-22  Score=165.05  Aligned_cols=243  Identities=18%  Similarity=0.204  Sum_probs=186.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      .+.|..++.+++|.++ ..+++|+.||.|+.+|+.+++.                            ..+..|.      
T Consensus        50 ~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~----------------------------~~igth~------   94 (323)
T KOG1036|consen   50 KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE----------------------------DQIGTHD------   94 (323)
T ss_pred             heecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----------------------------eeeccCC------
Confidence            5668999999999974 5689999999999999998864                            4567787      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ++|.+|.++  +....+++|+.|++|++||.+.......                                   
T Consensus        95 ------~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~-----------------------------------  131 (323)
T KOG1036|consen   95 ------EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT-----------------------------------  131 (323)
T ss_pred             ------CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc-----------------------------------
Confidence                  999999996  4566899999999999999986332211                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                   ......|.++..+  ++.|+.| .|..|.+||+++.....+.      .-....-.++|+++.|++ 
T Consensus       132 -------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------reS~lkyqtR~v~~~pn~-  189 (323)
T KOG1036|consen  132 -------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------RESSLKYQTRCVALVPNG-  189 (323)
T ss_pred             -------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh------ccccceeEEEEEEEecCC-
Confidence                         2334478888876  6788887 9999999999976654421      112334568999999977 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~  345 (487)
                      .-+++++-||.|.+=.++...........|+.|........    .-.+|++|+|+|-...+++| +||.|.+||+.. .
T Consensus       190 eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~----~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~-r  264 (323)
T KOG1036|consen  190 EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE----IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN-R  264 (323)
T ss_pred             CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce----EEEEeceeEeccccceEEecCCCceEEEccCcc-h
Confidence            77999999999998777776444444567888743332221    23589999999998899997 579999999986 7


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  390 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~  390 (487)
                      +.+..+..-+..+               -+++|+.||..||+++.
T Consensus       265 Krl~q~~~~~~SI---------------~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  265 KRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence            7777776554422               48999999999998875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.7e-24  Score=197.99  Aligned_cols=198  Identities=17%  Similarity=0.300  Sum_probs=168.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.++..  -..++.+++|+.|..+-+|.+..-.....                                         
T Consensus        29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S-----------------------------------------   65 (825)
T KOG0267|consen   29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNAITS-----------------------------------------   65 (825)
T ss_pred             hhhceeee--eccceeeccCCCceeeccccccCCchhhe-----------------------------------------
Confidence            67777776  35678899999999999998865432211                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|..+|.++.|+++..+|++| .+|+|++||++ ..+.+       +++.+|...+.+|.|+|-+ .+.+.+
T Consensus        66 ------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~v-------rtLtgh~~~~~sv~f~P~~-~~~a~g  130 (825)
T KOG0267|consen   66 ------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIV-------RTLTGHLLNITSVDFHPYG-EFFASG  130 (825)
T ss_pred             ------eeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhh-------hhhhccccCcceeeeccce-EEeccc
Confidence                  38999999999999999999999 99999999999 44444       3578999999999999999 899999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~  351 (487)
                      +.|+.+.+||.+...+.    ..+.+             |...+..+.|+|+|+++++|.+ ..++|||+.. ++....|
T Consensus       131 Stdtd~~iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef  192 (825)
T KOG0267|consen  131 STDTDLKIWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEF  192 (825)
T ss_pred             cccccceehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceeeeecccc-ccccccc
Confidence            99999999999965543    55555             4778999999999999999865 9999999986 8999999


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +.|...+               ..+.|+|..-++++|+.|+++++||+++-
T Consensus       193 ~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  193 KSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ccccccc---------------cccccCchhhhhccCCCCceeeeecccee
Confidence            9998765               47889999999999999999999999865

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=5.8e-22  Score=166.42  Aligned_cols=285  Identities=14%  Similarity=0.180  Sum_probs=194.7

Q ss_pred             cccCcEEEEEEcC-----CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           30 QDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        30 ~h~~~V~~~~~s~-----~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      .|..+|..++|++     +-+.+|+.+. +.+.||+....--                        .+.+..+....   
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------------ir~lq~y~D~d---   87 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------------IRLLQSYADED---   87 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------------eeeeeeccCCC---
Confidence            3778999999995     2256777765 4789998764321                        11122222211   


Q ss_pred             ccccccccccceeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                             .++....++|+....  ..++|.++.-|.|+|.|+..++...-                              
T Consensus        88 -------~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------------------------  130 (385)
T KOG1034|consen   88 -------HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------------------------  130 (385)
T ss_pred             -------CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc------------------------------
Confidence                   127788889975333  45788889999999999998875543                              


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                       +.+|...|+.+.+.|+ .++++++ .|.+|++|+++ ...++.++    .-+++|.+.|.++.
T Consensus       131 -----------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----GG~egHrdeVLSvD  188 (385)
T KOG1034|consen  131 -----------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----GGVEGHRDEVLSVD  188 (385)
T ss_pred             -----------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----cccccccCcEEEEE
Confidence                             3799999999999996 4677888 99999999999 56677665    34689999999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCcccccccee--eccc-ccccC--ccc------cccccccceeEEEEcCCCCEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRDA-AESHG--SKS------FFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~h-~~~~~--~~~------~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                      |+++| ..|++++.|..|++|++...+........  +... ...|.  +..      .-..|...|.|+.|-  |++++
T Consensus       189 ~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~il  265 (385)
T KOG1034|consen  189 FSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFIL  265 (385)
T ss_pred             EcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhee
Confidence            99999 99999999999999999965432111111  1110 00000  001      123578888888887  57888


Q ss_pred             EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      +-+ ++.|..|......+.+...+..+...+.+..+.-..+-.+....+|.|-+++||.|...|.|++||+++.+.
T Consensus       266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            854 589999987222333333333333333333333333333345677788899999999999999999997744

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.3e-24  Score=196.69  Aligned_cols=235  Identities=17%  Similarity=0.295  Sum_probs=196.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|.|+..-..++.+++|+.|..+-+|.+.....                           +..|.+|+      
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~---------------------------i~S~~~he------   70 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA---------------------------ITSLTGHE------   70 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch---------------------------hheeeccC------
Confidence            346889999999977889999999999999999765433                           46689999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            .+|.+|.|  .++..+|++|+.+|+|++||++..+....                                   
T Consensus        71 ------spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt-----------------------------------  107 (825)
T KOG0267|consen   71 ------SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT-----------------------------------  107 (825)
T ss_pred             ------Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh-----------------------------------
Confidence                  99999999  46778899999999999999998764433                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +.+|...+..+.|+|-+.++++| .|..+++||++..+ |..       .+.+|...+.++.|+|+| 
T Consensus       108 ------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~-------~~~s~~~vv~~l~lsP~G-  166 (825)
T KOG0267|consen  108 ------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSH-------TYKSHTRVVDVLRLSPDG-  166 (825)
T ss_pred             ------------hhccccCcceeeeccceEEeccccccccceehhhhccC-cee-------eecCCcceeEEEeecCCC-
Confidence                        48999999999999999999999 99999999999554 433       356799999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+++.+++|..++|||+..|++.    ..|+.             |++.+..+.|+|..-++++|+ |+++++||+++ .
T Consensus       167 r~v~~g~ed~tvki~d~~agk~~----~ef~~-------------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet-f  228 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLTAGKLS----KEFKS-------------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET-F  228 (825)
T ss_pred             ceeeccCCcceeeeecccccccc----ccccc-------------ccccccccccCchhhhhccCCCCceeeeeccce-e
Confidence            99999999999999999998876    66776             478999999999888888875 69999999986 5


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      ..+........               +|.+..|+|+++.+++|....
T Consensus       229 e~I~s~~~~~~---------------~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  229 EVISSGKPETD---------------GVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             EEeeccCCccC---------------CceeeeecCCceeeecCchhh
Confidence            54544443322               236999999999888887653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=1.5e-21  Score=168.58  Aligned_cols=333  Identities=15%  Similarity=0.232  Sum_probs=209.5

Q ss_pred             cCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ..+|..+.|.++.. .||||+.|..|+||.+...+..                  ...+..+++..+..|.         
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------------~~~~~V~y~s~Ls~H~---------   65 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------------GGDMKVEYLSSLSRHT---------   65 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCC------------------CCceeEEEeecccCCc---------
Confidence            45799999999876 9999999999999999876542                  1113667888999999         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         .+|++++|  +|+|++|++|+.+|.|.+|....-... ....                          ........|
T Consensus        66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~--------------------------e~~~~ke~w  113 (434)
T KOG1009|consen   66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF-DADT--------------------------EADLNKEKW  113 (434)
T ss_pred             ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc-cccc--------------------------hhhhCccce
Confidence               99999999  689999999999999999987641110 0000                          000000011


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                          .++..+.+|...|+.++|+|++++++++ .|..+++||+.. ++...+       +.+|...+..++|.|.+ +++
T Consensus       114 ----~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~-------~~dh~~yvqgvawDpl~-qyv  180 (434)
T KOG1009|consen  114 ----VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAI-------LDDHEHYVQGVAWDPLN-QYV  180 (434)
T ss_pred             ----EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEee-------ccccccccceeecchhh-hhh
Confidence                1222347899999999999999999999 999999999994 444443       57899999999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccce-eecccccccC--cccccc---ccccceeEEEEcCCCCEEEEEe-----C-----
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHG--SKSFFT---EIIASISDIKFANDGQHLLSRD-----Y-----  333 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~h~~~~~--~~~~~~---~~~~~v~~v~~s~~~~~l~s~~-----d-----  333 (487)
                      ++-+.|...+.+.+...+....... .+........  ....+.   ....-...++|+|||.+|++.+     .     
T Consensus       181 ~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~  260 (434)
T KOG1009|consen  181 ASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFR  260 (434)
T ss_pred             hhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceee
Confidence            9999999888887776544322110 1111000000  000000   0123456789999999998632     1     


Q ss_pred             CeEEEEeCCCCCceeeeeeccccccc--ccccccCCCCcceeeEEEEc-CCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRP--KLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      +..++|+-....++...+........  ..++.+-.-.-......-|+ |-+-.+|.++.+ .++|||.++-......  
T Consensus       261 n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v--  337 (434)
T KOG1009|consen  261 NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVV--  337 (434)
T ss_pred             ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEE--
Confidence            23456655444555655554443221  00000000000000000111 223345555554 7899997765321111  


Q ss_pred             ccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEE
Q 011368          411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF  483 (487)
Q Consensus       411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~  483 (487)
                                                                  ..-|-..|++++|++||..|++.|.|+..
T Consensus       338 --------------------------------------------~nihy~~iTDiaws~dg~~l~vSS~DGyC  366 (434)
T KOG1009|consen  338 --------------------------------------------DNIHYSAITDIAWSDDGSVLLVSSTDGFC  366 (434)
T ss_pred             --------------------------------------------eeeeeeeecceeecCCCcEEEEeccCCce
Confidence                                                        11234478899999999999988877743

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.3e-20  Score=173.00  Aligned_cols=262  Identities=13%  Similarity=0.137  Sum_probs=174.0

Q ss_pred             cCcEEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+.+++|+|+++.+ ++++.++.|++||..+++.                           ...+..+.         
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~---------   73 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------------------IGTLPSGP---------   73 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEeccCCC---------
Confidence            3457789999999876 5667889999999887653                           23333332         


Q ss_pred             ccccceeEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          .+..++|  +++++.++++ +.|+.+++||+.+++....                                     
T Consensus        74 ----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-------------------------------------  110 (300)
T TIGR03866        74 ----DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAE-------------------------------------  110 (300)
T ss_pred             ----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeE-------------------------------------
Confidence                2456788  5778776554 5689999999987654332                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCC-eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 ..+...+.+++|+|++++++++ .++ .+.+||.++. .....+        .....+.+++|+|++ .
T Consensus       111 -----------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~--------~~~~~~~~~~~s~dg-~  169 (300)
T TIGR03866       111 -----------IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNV--------LVDQRPRFAEFTADG-K  169 (300)
T ss_pred             -----------eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEE--------EcCCCccEEEECCCC-C
Confidence                       1122346789999999999998 554 5777898743 332221        112235678999999 7


Q ss_pred             EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE--eCCeEEEEeCCCC
Q 011368          268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~--~d~~i~iwd~~~~  344 (487)
                      .++++ ..++.|++||+++++..    ..+..+.... .    . .......++|+|++++++.+  .++.+.+||+++ 
T Consensus       170 ~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~-~----~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-  238 (300)
T TIGR03866       170 ELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV-H----P-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-  238 (300)
T ss_pred             EEEEEcCCCCEEEEEEcCcceee----eeeeeccccc-c----c-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-
Confidence            77544 46899999999987643    2222110000 0    0 01124568899999986553  357899999986 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      ++.+..+..... +               ++++|+|+|++|+++ +.+|.|++||+.++ ..+..++....+ +.++++
T Consensus       239 ~~~~~~~~~~~~-~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~-~~~~~~  299 (300)
T TIGR03866       239 YEVLDYLLVGQR-V---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIKVGRLP-WGVVVR  299 (300)
T ss_pred             CcEEEEEEeCCC-c---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEccccc-ceeEeC
Confidence            665554432221 1               589999999999886 46899999999987 445555554443 555554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=1.5e-21  Score=179.30  Aligned_cols=230  Identities=16%  Similarity=0.282  Sum_probs=181.7

Q ss_pred             ccCcEEE-EEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           31 DVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        31 h~~~V~~-~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      |.+-|.+ +++-+ ++-.|++|+.|+.|.+|...+...                           +.+|++|+       
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P---------------------------~~~LkgH~-------  101 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP---------------------------LYTLKGHK-------  101 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCCc---------------------------hhhhhccc-------
Confidence            5566666 77775 455699999999999999887654                           58899999       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++.  ..++. +++|+.|.++++|....-...                                      
T Consensus       102 -----snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~--------------------------------------  135 (745)
T KOG0301|consen  102 -----SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS--------------------------------------  135 (745)
T ss_pred             -----cceeeeec--CCcCc-eEecccccceEEecchhhhcc--------------------------------------
Confidence                 88999996  34444 899999999999987543211                                      


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +.+|+..|++++.-|++ .+++| .|.+|++|.-.   ...       .++.+|.+.|+.+++-+++  
T Consensus       136 -----------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l-------~tf~gHtD~VRgL~vl~~~--  191 (745)
T KOG0301|consen  136 -----------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLL-------KTFSGHTDCVRGLAVLDDS--  191 (745)
T ss_pred             -----------cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chh-------hhhccchhheeeeEEecCC--
Confidence                       38999999999999988 77788 99999999754   333       3578999999999999984  


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~  346 (487)
                      .|++++.||.|++|++. ++.+    ..+.+             |++-|.++...+++..++++ .|++++||+..   .
T Consensus       192 ~flScsNDg~Ir~w~~~-ge~l----~~~~g-------------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e  250 (745)
T KOG0301|consen  192 HFLSCSNDGSIRLWDLD-GEVL----LEMHG-------------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---E  250 (745)
T ss_pred             CeEeecCCceEEEEecc-Ccee----eeeec-------------cceEEEEEEecCCCCeEEEecCCceEEEeecC---c
Confidence            69999999999999994 4433    44445             58899999977777777765 67999999974   6


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +...+..+...+               +++.+=++|. |++|+.||.||||-...
T Consensus       251 ~~q~I~lPttsi---------------Wsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  251 CVQVITLPTTSI---------------WSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             eEEEEecCccce---------------EEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            666666554322               6888877886 67899999999999874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=172.33  Aligned_cols=236  Identities=18%  Similarity=0.264  Sum_probs=177.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .++|.|++-+|+|.+|+.|...|.|++|.+.+|..                           +..+.+|=          
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------------------------L~v~~aHY----------  123 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------------------------LNVLSAHY----------  123 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------------------HHHHHhhc----------
Confidence            56799999999999999998999999999999976                           36677887          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .+|+++.|  +.||.+|++|+.||.|.+|.+..---. ....                                    
T Consensus       124 --Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a-~~~~------------------------------------  162 (476)
T KOG0646|consen  124 --QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSA-DNDH------------------------------------  162 (476)
T ss_pred             --cceeEEEE--eCCCcEEEecCCCccEEEEEEEeeccc-ccCC------------------------------------
Confidence              89999999  689999999999999999988542100 0000                                    


Q ss_pred             ccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                      ...+... +..|.-+|+++...+.  ...++++ .|.++++||+..+.....+         .....+.+++.+|.+ ..
T Consensus       163 ~~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti---------~fp~si~av~lDpae-~~  231 (476)
T KOG0646|consen  163 SVKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI---------TFPSSIKAVALDPAE-RV  231 (476)
T ss_pred             Cccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE---------ecCCcceeEEEcccc-cE
Confidence            0123333 3899999999988653  4577777 9999999999955444333         234678999999998 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc--ceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ++.|+.+|.|.+.++.+-......+..-.. .........+.+|.+  .|+|++++-||..|++|+ ||.|+|||+.+ .
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S-~  309 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS-K  309 (476)
T ss_pred             EEecCCcceEEeeehhcCCccccccccccc-ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch-H
Confidence            999999999999888764311110111111 112233445677887  999999999999999996 69999999987 7


Q ss_pred             ceeeeeecccccc
Q 011368          346 TPVATFKIHEHLR  358 (487)
Q Consensus       346 ~~~~~~~~~~~~~  358 (487)
                      ++++++....+++
T Consensus       310 Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  310 QCIRTLQTSKGPV  322 (476)
T ss_pred             HHHHHHhhhcccc
Confidence            8888777545544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=3.2e-22  Score=176.95  Aligned_cols=255  Identities=19%  Similarity=0.291  Sum_probs=196.9

Q ss_pred             hhhhhhhcCCCCCCccc---cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCC
Q 011368           13 EWKCSQAFGERNPDEEL---QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (487)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (487)
                      .|.++|. +.+.++..+   .-.+.|.++.+.|||+-|++|+.-.++.|||+.....                       
T Consensus       444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-----------------------  499 (705)
T KOG0639|consen  444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-----------------------  499 (705)
T ss_pred             EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc-----------------------
Confidence            3767666 444444332   2356899999999999999999999999999876543                       


Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                        +...++..-.            -...+++.  +||.+..++++.||.|.|||+.+..+.+.                 
T Consensus       500 --rikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vrq-----------------  546 (705)
T KOG0639|consen  500 --RIKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ-----------------  546 (705)
T ss_pred             --chhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeeec-----------------
Confidence              1122222222            33456666  68999999999999999999998765544                 


Q ss_pred             ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368          170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  248 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~  248 (487)
                                                    +.+|.+.+.||..++||..|-+| -|++|+-||++.+.+..+        
T Consensus       547 ------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq--------  588 (705)
T KOG0639|consen  547 ------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--------  588 (705)
T ss_pred             ------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh--------
Confidence                                          48999999999999999999999 999999999996554321        


Q ss_pred             CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                       ....+.|.++...|++ .++++|-+++.+.+......+.     ..+..             |+.-|.++.|.+.|+++
T Consensus       589 -hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yqlhl-------------heScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  589 -HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQLHL-------------HESCVLSLKFAYCGKWF  648 (705)
T ss_pred             -hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eeecc-------------cccEEEEEEecccCcee
Confidence             1234679999999999 9999999999988877665431     23333             47889999999999999


Q ss_pred             EEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      ++. .|+-+..|.... +..+...+....                |+++.+|.|.++|+||+.|....||.+
T Consensus       649 vStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcceEEEEE
Confidence            975 579999999876 655555543332                258999999999999999999988876

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-19  Score=166.83  Aligned_cols=205  Identities=14%  Similarity=0.186  Sum_probs=159.3

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...|-+++|++ +..|.+.+.+|.|.-||+.+++.                           ...+....          
T Consensus        69 drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~---------------------------~~~~d~~g----------  110 (691)
T KOG2048|consen   69 DRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ---------------------------KYNIDSNG----------  110 (691)
T ss_pred             CCceeeEEEcc-CCeEEeecCCceEEEEecccCce---------------------------eEEecCCC----------
Confidence            56799999995 45677778899999999998875                           24455555          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        +.|.+++.+  |.+..++.|+.||.+..+++..+.+....                                      
T Consensus       111 --g~IWsiai~--p~~~~l~IgcddGvl~~~s~~p~~I~~~r--------------------------------------  148 (691)
T KOG2048|consen  111 --GAIWSIAIN--PENTILAIGCDDGVLYDFSIGPDKITYKR--------------------------------------  148 (691)
T ss_pred             --cceeEEEeC--CccceEEeecCCceEEEEecCCceEEEEe--------------------------------------
Confidence              889999995  56788999999997777777766654321                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l  269 (487)
                             .+...+++|.+++|+|++..|++| .||.|++||..++. ...+++++...+.. ..--|++|.|-.+  ..|
T Consensus       149 -------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI  218 (691)
T KOG2048|consen  149 -------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRD--STI  218 (691)
T ss_pred             -------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeec--CcE
Confidence                   135668999999999999999999 99999999999554 44454444333333 3345788888877  489


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM  343 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~  343 (487)
                      ++|...|+|.+||...+.+.    +.+..             |...|.+++..+++.+++++ -|+.|..|...+
T Consensus       219 ~sgDS~G~V~FWd~~~gTLi----qS~~~-------------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  219 ASGDSAGTVTFWDSIFGTLI----QSHSC-------------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             EEecCCceEEEEcccCcchh----hhhhh-------------hhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence            99999999999999998766    55555             47789999999998888875 578888887765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=178.20  Aligned_cols=292  Identities=15%  Similarity=0.134  Sum_probs=194.0

Q ss_pred             CCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ..+.+.|.++|..+.|-|....|++++.|.++++||+.+.+..                         -...+.||.   
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~---  144 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT---  144 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc---
Confidence            3457789999999999996678999999999999999988652                         123588998   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               ..|.+++|.| .+...|++|+.||.|.|||+............              ..+...........
T Consensus       145 ---------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--------------~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  145 ---------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--------------NRIYGRHNTAPTPS  200 (720)
T ss_pred             ---------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHh--------------hhhhccccCCCCCC
Confidence                     9999999986 46678999999999999999765422111000              00000000000000


Q ss_pred             eeeeeeeccceeeeecccCCCceeE---EEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCC---CCcE
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINS---ISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVI  256 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~---i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v  256 (487)
                      .+     ..+..+. -..+...|..   +.+..|...||++  .|+.|++||+++.....+.-......+..|   .-.+
T Consensus       201 kp-----~~kr~~k-~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~  274 (720)
T KOG0321|consen  201 KP-----LKKRIRK-WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ  274 (720)
T ss_pred             ch-----hhccccc-cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence            00     0000000 1334444444   4455678888887  599999999996654433211111233334   3467


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCe
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  335 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~  335 (487)
                      .++..+..| .+|++.+.|+.|.+|++.+-..  .....+.+|..           ...-..-..+|++.+|++|+ |..
T Consensus       275 ~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~-----------~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  275 VNLILDSSG-TYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLN-----------SSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             EEEEecCCC-CeEEEEecCCcEEEEeccccCc--CchhhccCccc-----------ceeeeeeecCCCCceEeccCCCcc
Confidence            888888989 7777777799999999987432  12233333210           11122334689999999995 699


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCC
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      .++|.+.....+...+.+|...+               +.++|.|. -.-++++++|..++||++.++.
T Consensus       341 ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  341 AYIWVVSSPEAPPALLLGHTREV---------------TTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eeeeeecCccCChhhhhCcceEE---------------EEEeeccccCCCceeeccCcceEEEeccCch
Confidence            99999988777788888888754               68999873 2346777999999999998763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=172.53  Aligned_cols=233  Identities=15%  Similarity=0.081  Sum_probs=181.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ++|.+++-  +++|.+|+.|+-.|.|++|.+.+|.++.+                                         
T Consensus        82 g~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------------------------------  118 (476)
T KOG0646|consen   82 GPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNV-----------------------------------------  118 (476)
T ss_pred             cceeeeec--CCCceEEEeecccCcEEEEEeccccHHHH-----------------------------------------
Confidence            78999998  67888888888999999999999987765                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEEEEecCC-CCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSAEFHPIY-CNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~  270 (487)
                            +.+|-..|+|+.|+-||.+|++| .||.|.+|.+..--..... ...+.+.+..|.-+|+.+...+.| ...++
T Consensus       119 ------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~  192 (476)
T KOG0646|consen  119 ------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY  192 (476)
T ss_pred             ------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence                  47999999999999999999999 9999999987532111111 011124578899999999887653 26899


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC----
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS----  345 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~----  345 (487)
                      ++|.|.++++||+..+.++    ..+..              ...+.+++.+|.+..+..|. +|.|.+.++....    
T Consensus       193 TaS~D~t~k~wdlS~g~LL----lti~f--------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~  254 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLL----LTITF--------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA  254 (476)
T ss_pred             EecCCceEEEEEeccceee----EEEec--------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence            9999999999999999766    44333              36899999999999999985 5999988875311    


Q ss_pred             -----------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          346 -----------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       346 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                                 ..+..+.+|.+..             .|++++++-||..|++|+.||.+.|||+.+. ..+.++....+
T Consensus       255 ~v~~k~~~~~~t~~~~~~Gh~~~~-------------~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kg  320 (476)
T KOG0646|consen  255 GVNQKGRHEENTQINVLVGHENES-------------AITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKG  320 (476)
T ss_pred             cccccccccccceeeeeccccCCc-------------ceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence                       1233444554411             2379999999999999999999999999876 45666666888


Q ss_pred             ccccceEeeCCcc
Q 011368          415 ENRKPILQAAPRA  427 (487)
Q Consensus       415 ~v~~~~~~~~~~~  427 (487)
                      +|+.+.+.|-.++
T Consensus       321 pVtnL~i~~~~~~  333 (476)
T KOG0646|consen  321 PVTNLQINPLERG  333 (476)
T ss_pred             ccceeEeeccccc
Confidence            9999988765333

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=2.9e-21  Score=175.64  Aligned_cols=108  Identities=10%  Similarity=0.060  Sum_probs=91.0

Q ss_pred             eeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCc------eeEEEeccCCccccceEeeCCccccccccceeeecccce-e
Q 011368          373 KFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H  444 (487)
Q Consensus       373 ~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~  444 (487)
                      |+++.|.| |...||++++||.|++|.+..++.      ....+.+|.+.|..+-|.|.. ..+     |++++.|.. +
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-adv-----La~asyd~Ti~  703 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-ADV-----LAVASYDSTIE  703 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-hhH-----hhhhhccceee
Confidence            57899999 788999999999999999987542      356888999999999999952 333     889999999 9


Q ss_pred             cCCC--CCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          445 ENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       445 ~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      +|+.  ......+.+|.+.|.++||||||+.+|+.+.|+ +++|.
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            9944  455667789999999999999999999999655 88885

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.3e-21  Score=163.81  Aligned_cols=288  Identities=18%  Similarity=0.200  Sum_probs=195.6

Q ss_pred             CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (487)
Q Consensus        45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~  124 (487)
                      ..+|++...|.|++||..+++.                           +..++++.            ..++.++|...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~---------------------------l~~fk~~~------------~~~N~vrf~~~   81 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL---------------------------LEEFKGPP------------ATTNGVRFISC   81 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh---------------------------hheecCCC------------CcccceEEecC
Confidence            5688898999999999988765                           47789998            88899999742


Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      .....+.+|+.||+|++||++........                                            . ...+.
T Consensus        82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--------------------------------------------~-~~~~~  116 (376)
T KOG1188|consen   82 DSPHGVISCSSDGTVRLWDIRSQAESARI--------------------------------------------S-WTQQS  116 (376)
T ss_pred             CCCCeeEEeccCCeEEEEEeecchhhhhe--------------------------------------------e-ccCCC
Confidence            24567889999999999999876533221                                            1 13343


Q ss_pred             -CceeEEEeCCCCCEEEEe-----cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE
Q 011368          205 -FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  278 (487)
Q Consensus       205 -~~v~~i~~s~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  278 (487)
                       .+..|++.+-+++.+++|     .+-.|.+||++...+.+..      -.+.|.+.|+++.|+|..+++|++||.||.|
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhccCcceeEEecCCCCCeEEeecccceE
Confidence             566777777778888886     3678999999976664443      2567999999999999999999999999999


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEEeCCeEEEEeCCCCCceeeeeecccc
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      .|||+.....-.....++..              ...|..+.|..++  +.+......+..+|+++. +.+...+....-
T Consensus       191 nlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~-~~~~~~~~~~~~  255 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELED-GSEETWLENPDV  255 (376)
T ss_pred             EeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEccC-CChhhcccCccc
Confidence            99999876433333334433              5779999999887  433334459999999986 554444433321


Q ss_pred             cccccccccCCCCcceeeEEEEcC-CCCEEEEEcC-CCcEEEEEeCC---C--CceeEEEec-cCCccccceEeeCCccc
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSY-SNLLRIFSHGV---G--SAGGITVEA-GKNENRKPILQAAPRAR  428 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~-dg~i~iwd~~~---~--~~~~~~~~~-~~~~v~~~~~~~~~~~~  428 (487)
                      ...........+.+   .. +.+| +....+.++. -|...++-+..   +  ......+++ |...|+++.|..  .+.
T Consensus       256 ~~~d~r~~~~~dY~---I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~--~~~  329 (376)
T KOG1188|consen  256 SADDLRKEDNCDYV---IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV--KND  329 (376)
T ss_pred             hhhhHHhhhhhhhe---ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc--ccc
Confidence            11111111111111   11 1223 4455555554 56666665542   2  223455665 677778877764  344


Q ss_pred             cccccceeeecccce-ecCCC
Q 011368          429 RSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       429 ~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      +     +-+|+.||. .+|..
T Consensus       330 ~-----l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  330 V-----LYTGGEDGLLQAWKV  345 (376)
T ss_pred             e-----eeccCCCceEEEEec
Confidence            4     899999999 99963

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=5.6e-22  Score=168.58  Aligned_cols=240  Identities=14%  Similarity=0.177  Sum_probs=176.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|..|++..  ..+++++.|.+|+.|.++...                            ..++.+.       
T Consensus       105 f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p----------------------------~~tilg~-------  147 (433)
T KOG0268|consen  105 FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP----------------------------LHTILGK-------  147 (433)
T ss_pred             eecccCceeeEEecc--cceEEecCCcceeeeeccCCc----------------------------ceeeecc-------
Confidence            345888999999987  567888899999999986531                            2334333       


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..+..|.-+  ..+..++|++.  .|.|||......+..                                   
T Consensus       148 ------s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~s-----------------------------------  182 (433)
T KOG0268|consen  148 ------SVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSS-----------------------------------  182 (433)
T ss_pred             ------ccccccccc--cccccccccCc--eeeecccccCCccce-----------------------------------
Confidence                  334555542  34567888876  499999976654433                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  +.-..+.|.++.|+|. ...|++| .|+.|.+||++......+++         ....-..++|+|.+
T Consensus       183 ------------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi---------~~mRTN~IswnPea  241 (433)
T KOG0268|consen  183 ------------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI---------LTMRTNTICWNPEA  241 (433)
T ss_pred             ------------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee---------eeccccceecCccc
Confidence                        1334567999999995 5567777 99999999999544333321         11234678999987


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       ..++++++|..+..||++.-.   ..+..+.             +|.+.|.++.|||.|+-+++|+ |.+|+||..+. 
T Consensus       242 -fnF~~a~ED~nlY~~DmR~l~---~p~~v~~-------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~-  303 (433)
T KOG0268|consen  242 -FNFVAANEDHNLYTYDMRNLS---RPLNVHK-------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH-  303 (433)
T ss_pred             -cceeeccccccceehhhhhhc---ccchhhc-------------ccceeEEEeccCCCcchhccccccceEEEeecCC-
Confidence             889999999999999999743   2234444             4689999999999999999998 59999999874 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +.....+              +.--+..|+++.||.|.+++++||+|+.|++|.....
T Consensus       304 ~~SRdiY--------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  304 GHSRDIY--------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             Ccchhhh--------------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            4332222              1222334579999999999999999999999998754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=3.2e-21  Score=170.49  Aligned_cols=264  Identities=16%  Similarity=0.153  Sum_probs=199.5

Q ss_pred             cEEEEEEcCCCCEEEEE--ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .+.++.|+.... |+++  +.|..|++|.-... .                      |+...+....+..          
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~----------------------~~Vp~~~k~~gd~----------   81 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-T----------------------PEVPRVRKLTGDN----------   81 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCC-C----------------------Cccceeeccccch----------
Confidence            488999988664 4444  46778999975433 1                      1333334444433          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                       +..|.+..+     ..++++|+..+.|+|||++...+.+.                                       
T Consensus        82 -~~Cv~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr~---------------------------------------  116 (673)
T KOG4378|consen   82 -AFCVACASQ-----SLYEISGGQSGCVKIWDLRAKLIHRF---------------------------------------  116 (673)
T ss_pred             -HHHHhhhhc-----ceeeeccCcCceeeehhhHHHHHhhh---------------------------------------
Confidence             123444444     47899999999999999996554433                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l  269 (487)
                              +.+|.+.|+++.++....+||++ ..|.|.|..+.++.+..        ++... ...|+-+.|+|....+|
T Consensus       117 --------lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt--------~f~~~sgqsvRll~ys~skr~lL  180 (673)
T KOG4378|consen  117 --------LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT--------TFTIDSGQSVRLLRYSPSKRFLL  180 (673)
T ss_pred             --------ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc--------ceecCCCCeEEEeecccccceee
Confidence                    48999999999999999999999 89999999998654422        12222 34567899999886678


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE--EeCCeEEEEeCCCCCce
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--RDYMNLKLWDIRMDSTP  347 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s--~~d~~i~iwd~~~~~~~  347 (487)
                      .+++.+|.|.+||+......    ..+            ...|..+...|+|+|....|++  |-|..|.+||.+. .+.
T Consensus       181 ~~asd~G~VtlwDv~g~sp~----~~~------------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s  243 (673)
T KOG4378|consen  181 SIASDKGAVTLWDVQGMSPI----FHA------------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QAS  243 (673)
T ss_pred             EeeccCCeEEEEeccCCCcc----cch------------hhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccc
Confidence            88899999999999876533    222            2346889999999998775554  4679999999986 565


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      ...+......                ..++|+++|.+|++|+..|.|..||++..+..+..+.+|...|++++|.+.+
T Consensus       244 ~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  244 TDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            5555544332                4899999999999999999999999999888899999999999999999863

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4e-21  Score=168.45  Aligned_cols=251  Identities=16%  Similarity=0.183  Sum_probs=190.2

Q ss_pred             cCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      .-+|.+.+|.|+|. .+++++....++.||+.+.+..                         .+..+.+++         
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------------------------k~~~~~g~e---------  302 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------------------------KLKPPYGVE---------  302 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccc-------------------------cccCCCCcc---------
Confidence            45899999999998 8999999999999999887653                         123334443         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                        +..+.....  ++++++|+..+..|.|.+....+++++..                                      
T Consensus       303 --~~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s--------------------------------------  340 (514)
T KOG2055|consen  303 --EKSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITS--------------------------------------  340 (514)
T ss_pred             --cchhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhhe--------------------------------------
Confidence              144556666  68899999999999999999988886654                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                                -.-.+.|..++|+.+++.|+++ .+|.|.+||++.. .++..+.     -++. -.-++++.++++ .+|
T Consensus       341 ----------~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~-----D~G~-v~gts~~~S~ng-~yl  402 (514)
T KOG2055|consen  341 ----------FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFV-----DDGS-VHGTSLCISLNG-SYL  402 (514)
T ss_pred             ----------eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEe-----ecCc-cceeeeeecCCC-ceE
Confidence                      2346779999999999999888 9999999999954 5554321     1111 123567788999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---CCeEEEEeCCCCCc
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDST  346 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---d~~i~iwd~~~~~~  346 (487)
                      |+|+..|.|.|||..+-.         .  ...|.+...+......|++++|++|++.|+.++   ...+++-.+.+ ..
T Consensus       403 A~GS~~GiVNIYd~~s~~---------~--s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-~T  470 (514)
T KOG2055|consen  403 ATGSDSGIVNIYDGNSCF---------A--STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS-CT  470 (514)
T ss_pred             EeccCcceEEEeccchhh---------c--cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc-ee
Confidence            999999999999976521         1  123344444555578999999999999999775   38899998875 44


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      ....+.....            .+..|++++|||.|.+||.|..+|.+.+|.+.
T Consensus       471 VFsNfP~~n~------------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  471 VFSNFPTSNT------------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeccCCCCCC------------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            4445544433            23345899999999999999999999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.2e-22  Score=192.60  Aligned_cols=250  Identities=16%  Similarity=0.167  Sum_probs=187.3

Q ss_pred             ccceeEEEEEecCCCc--EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          113 EEKINRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+.+.++|.+..++.  +|+.|..||.|.+||...-..-..                                      
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~--------------------------------------  105 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANAS--------------------------------------  105 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcc--------------------------------------
Confidence            3778999996533322  588889999999999875300000                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                        ...+.. ...|.+.|..+.|++. +++||+| +||.|.|||+.........      .-....+.|.+++|+..-..+
T Consensus       106 --~~~la~-~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhI  176 (1049)
T KOG0307|consen  106 --EEVLAT-KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHI  176 (1049)
T ss_pred             --hHHHhh-hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHH
Confidence              001111 3789999999999996 4599999 9999999999965543321      012245679999999876578


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE--eC--CeEEEEeCCC
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--DY--MNLKLWDIRM  343 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~--~d--~~i~iwd~~~  343 (487)
                      |++++.+|.+.|||++..+.+    -.+..|.           -...+..++|+|+.. .|+++  +|  -.|.+||+|.
T Consensus       177 LAS~s~sg~~~iWDlr~~~pi----i~ls~~~-----------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  177 LASGSPSGRAVIWDLRKKKPI----IKLSDTP-----------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             hhccCCCCCceeccccCCCcc----cccccCC-----------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            999999999999999987644    2333310           023578999999864 33333  34  7899999998


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      ...+++++.+|...+               .++.|++.+ ++|++++.|+.|.+|+.+++ +.+.++....+++..+.|.
T Consensus       242 assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  242 ASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             cCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeec
Confidence            888999999998755               699999955 89999999999999999998 6688888889999999999


Q ss_pred             eCCccccccccceeeecccce-ecC
Q 011368          423 AAPRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      |..++.      ++..+-+|. .+.
T Consensus       306 pr~P~~------~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  306 PRNPSV------MAAASFDGKISIY  324 (1049)
T ss_pred             CCCcch------hhhheeccceeee
Confidence            974433      577777777 666

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.5e-20  Score=161.57  Aligned_cols=317  Identities=11%  Similarity=0.063  Sum_probs=215.5

Q ss_pred             CCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (487)
Q Consensus        24 ~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (487)
                      .......|.+.|++|.||.++++||+|+.|..+++|+++..-.        +.             ..+++ .+++|.. 
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--------~k-------------~~KPI-~~~~~~H-  104 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--------RK-------------TPKPI-GVMEHPH-  104 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--------hc-------------CCCCc-eeccCcc-
Confidence            3445678999999999999999999999999999999863211        00             01111 1333321 


Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                               ...|.|++|  ......+.+|..+++|.+-|+++.+.+.+...                            
T Consensus       105 ---------~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~----------------------------  145 (609)
T KOG4227|consen  105 ---------RSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE----------------------------  145 (609)
T ss_pred             ---------ccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc----------------------------
Confidence                     178999999  56778899999999999999998876654110                            


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                       ....+.|+.+..+|-.+.|++. .++.|.+||.+........+     -+.........+.|+
T Consensus       146 -----------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  146 -----------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPANSGKNFYTAEFH  203 (609)
T ss_pred             -----------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eecCCCccceeeeec
Confidence                             2234589999999988888888 99999999998544333322     122344567889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeC
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI  341 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~  341 (487)
                      |..+.+|++.+..+.+.+||.+...........+.+          ++.....-..+.|+|+|..+++-.. ..-.+||+
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhcccc----------CcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            999899999999999999999875432111111111          0111223467889999998887543 44567787


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC----C--------------
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----S--------------  403 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~----~--------------  403 (487)
                      .+..-++..+. |...      -|-+.+.  +-+++|-.|.. +++|+.+=.|++|.+...    +              
T Consensus       274 ~S~R~~V~k~D-~N~~------GY~N~~T--~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  274 ISQRCFVLKSD-HNPN------GYCNIKT--IKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             ecccceeEecc-CCCC------cceeeee--eeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence            65233333332 1110      0001111  14788876654 899999999999998641    1              


Q ss_pred             ----ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCc
Q 011368          404 ----AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH  451 (487)
Q Consensus       404 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~  451 (487)
                          .....+++|...++++-|+|.  ..+     |++.+-... ++|+...+
T Consensus       344 ~~i~~~~~VLrGHRSv~NQVRF~~H--~~~-----l~SSGVE~~~KlWS~~r~  389 (609)
T KOG4227|consen  344 IFIEKELTVLRGHRSVPNQVRFSQH--NNL-----LVSSGVENSFKLWSDHRL  389 (609)
T ss_pred             heecceeEEEecccccccceeecCC--cce-----EeccchhhheeccccccC
Confidence                135578999999999999984  333     777776666 99955433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=170.87  Aligned_cols=275  Identities=15%  Similarity=0.210  Sum_probs=202.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .|+.++|-|||..|+.+. +..+.|||.++|..                           +.++++|.            
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l---------------------------lqtLKgHK------------   53 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL---------------------------LQPLKGHK------------   53 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccc---------------------------cccccccc------------
Confidence            699999999998887765 45799999998875                           48899999            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.|++|+|  +.||+++++|+.|+.|.+|+-.-   ..+.++.+...+.|+.|.+-+..+.....++      ...|...
T Consensus        54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd------FglWS~~  122 (1081)
T KOG1538|consen   54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD------FGLWSPE  122 (1081)
T ss_pred             ceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh------ccccChh
Confidence            99999999  68999999999999999997543   3344455556667777766655544443332      2234333


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC----CCE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY----CNL  268 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~----~~~  268 (487)
                      +..... .....+|.+++|+.||++++.| .+|+|.|-+-. +.....+     ..-.+.+++|++++|+|..    ...
T Consensus       123 qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~Rpgg~Nspiwsi~~~p~sg~G~~di  195 (1081)
T KOG1538|consen  123 QKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----ERPGGSNSPIWSICWNPSSGEGRNDI  195 (1081)
T ss_pred             hhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----eCCCCCCCCceEEEecCCCCCCccce
Confidence            222211 3445678899999999999999 99999998665 4444433     1234677899999999863    157


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~  347 (487)
                      +++.....++.+|.+.....-..  +.+.                -...|+.+.++|+|++.| +|+.+.+|--+  +..
T Consensus       196 ~aV~DW~qTLSFy~LsG~~Igk~--r~L~----------------FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--Gvr  255 (1081)
T KOG1538|consen  196 LAVADWGQTLSFYQLSGKQIGKD--RALN----------------FDPCCISYFTNGEYILLGGSDKQLSLFTRD--GVR  255 (1081)
T ss_pred             EEEEeccceeEEEEecceeeccc--ccCC----------------CCchhheeccCCcEEEEccCCCceEEEeec--CeE
Confidence            88888888888888765332111  1111                134788999999999986 57999999753  666


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +.++.....++               ++++..|++++++.|+.||+|..|++..
T Consensus       256 LGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  256 LGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhHH
Confidence            66665555543               7999999999999999999999999853

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=1.4e-19  Score=149.65  Aligned_cols=301  Identities=16%  Similarity=0.224  Sum_probs=205.1

Q ss_pred             cCcEEEEEEcC--C-CCEEEEEe----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           32 VDIVSAIEFDK--T-GDYLAVGD----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        32 ~~~V~~~~~s~--~-~~~l~~g~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      .-+++++.|+.  + +.+||.|+    ..+.|.|-.++...-                       +...... ..|.   
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----------------------e~~~~a~-fd~~---   96 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----------------------ELVEDAN-FDHP---   96 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----------------------ceeccCC-CCCC---
Confidence            44688999983  2 35788887    456777776652211                       1111111 2343   


Q ss_pred             ccccccccccceeEEEEEecCCCc---EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGS---MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                               -+++.+.|.|++.|.   +||+++  ..+|+|.+...+...........                      
T Consensus        97 ---------YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~----------------------  143 (364)
T KOG0290|consen   97 ---------YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNN----------------------  143 (364)
T ss_pred             ---------CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhcc----------------------
Confidence                     889999998765443   344443  47999999743211111000000                      


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCCcEEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITS  258 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~  258 (487)
                                   .   ....+..++++..|+. +-++|.++ -|-+..|||++++.. .+++      .+-+|...|..
T Consensus       144 -------------~---kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~D  201 (364)
T KOG0290|consen  144 -------------N---KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYD  201 (364)
T ss_pred             -------------C---cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeE
Confidence                         0   0145678999999986 67888888 999999999996511 1222      35689999999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEE-EeC-Ce
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS-RDY-MN  335 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s-~~d-~~  335 (487)
                      ++|...+...||+.+.||.+|+||+|..+-.    .++..   ++       ....+...++|+++. ++||+ +.| ..
T Consensus       202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHS----TIIYE---~p-------~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHS----TIIYE---DP-------SPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             EEeccCccceEEEecCCCcEEEEEecccccc----eEEec---CC-------CCCCcceeeccCcCCchHHhhhhcCCce
Confidence            9999987789999999999999999985422    33222   01       113578899999754 56666 345 89


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      |.|-|++.+..++..++.|...+               ..++|.|. ...|+++++|..+.|||+.+...     +.-.+
T Consensus       268 V~iLDiR~P~tpva~L~~H~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----~~~~d  327 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLRNHQASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----ENGED  327 (364)
T ss_pred             EEEEEecCCCcceehhhcCcccc---------------cceEecCCCCceeeecCCcceEEEEecccccc-----cCCCC
Confidence            99999999999999999999865               69999995 56899999999999999986411     00000


Q ss_pred             ccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCC-CCEEEEecCCeEEEE
Q 011368          415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNSLFFH  485 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd-~~~la~~s~~~~~i~  485 (487)
                              |                             ...+.....|+.++|+|. ..+|+++.++.+-+-
T Consensus       328 --------P-----------------------------ilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  328 --------P-----------------------------ILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             --------c-----------------------------hhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence                    0                             011123458899999965 589999998876554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.4e-20  Score=164.44  Aligned_cols=266  Identities=18%  Similarity=0.221  Sum_probs=183.0

Q ss_pred             EEEEEEcC-------CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           35 VSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        35 V~~~~~s~-------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..|++|..       -|+|+|.|..|..|.|||++-.....+...+-+...+...      ...+.-..-.+|+      
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~------k~~k~~~~~~gHT------  243 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKK------KKGKRSNSASGHT------  243 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhh------hhcccccccccch------
Confidence            35777643       3589999999999999998754443222222222111100      0000011233576      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|+. .-...|++|+.|.+|++||+.+++....                                   
T Consensus       244 ------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s-----------------------------------  281 (463)
T KOG0270|consen  244 ------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS-----------------------------------  281 (463)
T ss_pred             ------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee-----------------------------------
Confidence                  8899999963 4457899999999999999999987665                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  +..|.+.|.++.|+| ....|++| .|++|.+.|.+.....-..        -...+.|-.++|+|..
T Consensus       282 ------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------wk~~g~VEkv~w~~~s  341 (463)
T KOG0270|consen  282 ------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------WKFDGEVEKVAWDPHS  341 (463)
T ss_pred             ------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------EEeccceEEEEecCCC
Confidence                        367899999999998 57788899 9999999999943221111        1234678999999998


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE-EEE-eCCeEEEEeCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSR-DYMNLKLWDIRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s~-~d~~i~iwd~~~  343 (487)
                      +..+++++.||.|+-+|+|+...   .+.++..             |...|.++++++.-..+ +++ .++.|++|++..
T Consensus       342 e~~f~~~tddG~v~~~D~R~~~~---~vwt~~A-------------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  342 ENSFFVSTDDGTVYYFDIRNPGK---PVWTLKA-------------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             ceeEEEecCCceEEeeecCCCCC---ceeEEEe-------------ccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            78899999999999999998642   2355555             58899999999876554 455 469999999974


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCc
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                       ..+ .....|.-....+            .++++.|+- -.++.|+..+.++|||+.+...
T Consensus       406 -~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  406 -DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             -CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChh
Confidence             222 1122222211111            256666653 4677888888999999988744

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=9.4e-20  Score=159.26  Aligned_cols=260  Identities=17%  Similarity=0.195  Sum_probs=177.4

Q ss_pred             cceeEEEEEec-----CCCcEEEEEeCCCcEEEEEcccccee-EeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          114 EKINRVRWCAA-----PNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       114 ~~I~~v~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      ....|++|.-.     ..|+++|.|+.|..|.|||+.-.... ....+..                     ..+.     
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs---------------------~~sk-----  227 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGS---------------------KASK-----  227 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeech---------------------hhhh-----
Confidence            44467777521     23679999999999999998632211 0000000                     0000     


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                       .......+.....+|++.|.+++|+.+ .+.||+| .|.+|++||+.++ ++..+       +..|...|.+++|+|..
T Consensus       228 -~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s-------~~~~~k~Vq~l~wh~~~  298 (463)
T KOG0270|consen  228 -KKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSS-------ITHHGKKVQTLEWHPYE  298 (463)
T ss_pred             -hhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Cccee-------hhhcCCceeEEEecCCC
Confidence             000000001112589999999999875 5577888 9999999999954 44433       46789999999999998


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EE-eCCeEEEEeCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SR-DYMNLKLWDIRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~-~d~~i~iwd~~~  343 (487)
                      +.+|++|+.|+++.+.|+|....   ....|+.              .+.|..++|.|.....+ ++ .||+|+-+|+|.
T Consensus       299 p~~LLsGs~D~~V~l~D~R~~~~---s~~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~  361 (463)
T KOG0270|consen  299 PSVLLSGSYDGTVALKDCRDPSN---SGKEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN  361 (463)
T ss_pred             ceEEEeccccceEEeeeccCccc---cCceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence            89999999999999999995221   1244554              56899999999876544 44 459999999999


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccC---Cccccc
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---NENRKP  419 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~  419 (487)
                      .++++.++++|...+               .++++++. ..++++++.|+.+++|++......  ....|.   +...+.
T Consensus       362 ~~~~vwt~~AHd~~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  362 PGKPVWTLKAHDDEI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCF  424 (463)
T ss_pred             CCCceeEEEeccCCc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeec
Confidence            889999999999876               48888874 457889999999999999854321  111111   112233


Q ss_pred             eEeeCCccccccccceeeecccce-ecCCC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      ++.|. ...+     ++.|+.... ++|+.
T Consensus       425 ~~~~~-~a~~-----la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  425 ALDPD-VAFT-----LAFGGEKAVLRVWDI  448 (463)
T ss_pred             ccCCC-cceE-----EEecCccceEEEeec
Confidence            33443 2222     788888887 99954

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.9e-20  Score=152.27  Aligned_cols=200  Identities=16%  Similarity=0.247  Sum_probs=149.1

Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      -.++.|  ++.|.+||+|+.||.|.|||+.+....+.                                           
T Consensus        26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------------------------------   60 (405)
T KOG1273|consen   26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM-------------------------------------------   60 (405)
T ss_pred             cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence            588899  67899999999999999999998764433                                           


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                          +.+|..+|.+++||++|+.|+++ .|..|.+||+..+. ++..+        ...++|+.+.|+|...+..++.-.
T Consensus        61 ----lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~ri--------rf~spv~~~q~hp~k~n~~va~~~  127 (405)
T KOG1273|consen   61 ----LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRI--------RFDSPVWGAQWHPRKRNKCVATIM  127 (405)
T ss_pred             ----hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEE--------EccCccceeeeccccCCeEEEEEe
Confidence                48999999999999999999999 99999999999665 44332        245789999999976455555555


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeec
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~  353 (487)
                      +..-.+-++..+.-     ..+..  ..+...      ...-.+..|.+.|+++++|.. |.+.++|..+ .+++..++.
T Consensus       128 ~~sp~vi~~s~~~h-----~~Lp~--d~d~dl------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~ri  193 (405)
T KOG1273|consen  128 EESPVVIDFSDPKH-----SVLPK--DDDGDL------NSSASHGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRI  193 (405)
T ss_pred             cCCcEEEEecCCce-----eeccC--CCcccc------ccccccccccCCCCEEEEecCcceEEEEecch-heeeeeeee
Confidence            55455555554321     11211  000000      112233468899999999965 9999999997 677777765


Q ss_pred             ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      ....              .|..+.++..|+.|+.-+.|..||.|+++.
T Consensus       194 ts~~--------------~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  194 TSVQ--------------AIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             chhe--------------eeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            5411              124899999999999999999999999873

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.4e-19  Score=171.64  Aligned_cols=206  Identities=17%  Similarity=0.282  Sum_probs=159.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      +...|.+++..  +.+|++|+.+++|.+|....++..                           ..+.-.+         
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~---------------------------~iL~Rft---------   96 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED---------------------------TILARFT---------   96 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc---------------------------ceeeeee---------
Confidence            77788888865  458999999999999998877542                           1222222         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         -++.+++|  +.+|++++.|+.|-.|++-++.+......                                      
T Consensus        97 ---lp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~--------------------------------------  133 (933)
T KOG1274|consen   97 ---LPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKV--------------------------------------  133 (933)
T ss_pred             ---ccceEEEE--ecCCcEEEeecCceeEEEEeccccchhee--------------------------------------
Confidence               67899999  57899999999999999999988765543                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~  268 (487)
                               +.+|..+|.++.|+|++++||++ .||.|++||+.. +.+..++..-......- ...+..++|+|+| ..
T Consensus       134 ---------lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~  202 (933)
T KOG1274|consen  134 ---------LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKG-GT  202 (933)
T ss_pred             ---------ecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCC-Ce
Confidence                     48999999999999999999999 999999999994 44433332111112222 4556789999998 78


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      +++...|+.|++|+..+....    ..+..           ..+...+..++|+|+|+|||++. +|.|.|||.++
T Consensus       203 la~~~~d~~Vkvy~r~~we~~----f~Lr~-----------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  203 LAVPPVDNTVKVYSRKGWELQ----FKLRD-----------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEeeccCCeEEEEccCCceeh----eeecc-----------cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            888889999999999887644    22222           12234599999999999999986 69999999975

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.5e-21  Score=186.16  Aligned_cols=263  Identities=15%  Similarity=0.230  Sum_probs=198.3

Q ss_pred             CCCccccccCcEEEEEEcCCCCE----EEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC
Q 011368           24 NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS   99 (487)
Q Consensus        24 ~~~~~~~h~~~V~~~~~s~~~~~----l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (487)
                      .+.-.+.-....+.++|.+.|..    ||.|..||.|.+||......                     ......+.++..
T Consensus        56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------~~~~~~la~~~~  114 (1049)
T KOG0307|consen   56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------NASEEVLATKSK  114 (1049)
T ss_pred             cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------CcchHHHhhhcc
Confidence            45555666778999999998865    88899999999999765311                     114455677888


Q ss_pred             CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCC
Q 011368          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (487)
Q Consensus       100 h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      |.            +.|..+.|++ ..+++|++|+.||.|.|||+..-+.-....                         
T Consensus       115 h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------------------------  156 (1049)
T KOG0307|consen  115 HT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG-------------------------  156 (1049)
T ss_pred             cC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------
Confidence            88            9999999975 345699999999999999998743211100                         


Q ss_pred             CCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          180 PSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                                          -..-.+.|.+++|+.. ...|+++ .+|.+.|||++..+..+++-      .......+.
T Consensus       157 --------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls------~~~~~~~~S  210 (1049)
T KOG0307|consen  157 --------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS------DTPGRMHCS  210 (1049)
T ss_pred             --------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc------cCCCcccee
Confidence                                0234678999999875 4556677 88999999999665544321      111223477


Q ss_pred             EEEEecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEE-e
Q 011368          258 SAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-D  332 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~-~  332 (487)
                      .++|+|++...|++++.|.   .|.+||+|.-...   .+++++             |...|.++.|++.+ ++|+++ .
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---~k~~~~-------------H~~GilslsWc~~D~~lllSsgk  274 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---LKILEG-------------HQRGILSLSWCPQDPRLLLSSGK  274 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCc---hhhhcc-------------cccceeeeccCCCCchhhhcccC
Confidence            8999999877888888754   6999999975432   355555             58899999999877 677765 5


Q ss_pred             CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCCC
Q 011368          333 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       333 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~~  403 (487)
                      |+.|.+|+.++ ++.+..+.....+.               +.+.|.|... .+++++-||.|-||.+....
T Consensus       275 D~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  275 DNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            79999999998 88888888766643               6999999554 88899999999999998764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.6e-20  Score=168.80  Aligned_cols=282  Identities=15%  Similarity=0.179  Sum_probs=198.2

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ....|.+.|+.++|.|....|++++.||++.+|++....                   .......+++.+|.+|.     
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~-----  344 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHE-----  344 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEeccc-----
Confidence            355689999999999999999999999999999994321                   12233677899999999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ++|.|++.  .++++.+++|+-||+|+.|++.... -..-.                                
T Consensus       345 -------gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds--------------------------------  382 (577)
T KOG0642|consen  345 -------GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDS--------------------------------  382 (577)
T ss_pred             -------CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccccc--------------------------------
Confidence                   99999999  5789999999999999999886321 10000                                


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                         ++ .......+.||.+.|+.+++++....|++| .||++++|+......+.  +.    .-+.| +...++.+-...
T Consensus       383 ---~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~--f~----~~~e~-g~Plsvd~~ss~  451 (577)
T KOG0642|consen  383 ---YD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCT--FG----EPKEH-GYPLSVDRTSSR  451 (577)
T ss_pred             ---cC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccc--cC----Ccccc-CCcceEeeccch
Confidence               00 011112248999999999999998899999 99999999988444311  10    01112 223555554433


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~  344 (487)
                      +.++++...-+.-.++++......    +.+.. ...+....     ...+..+.++|.+.+.+++ .++.|+++|..+ 
T Consensus       452 ~a~~~~s~~~~~~~~~~~ev~s~~----~~~~s-~~~~~~~~-----~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-  520 (577)
T KOG0642|consen  452 PAHSLASFRFGYTSIDDMEVVSDL----LIFES-SASPGPRR-----YPQINKVVSHPTADITFTAHEDRSIRFFDNKT-  520 (577)
T ss_pred             hHhhhhhcccccccchhhhhhhhe----eeccc-cCCCcccc-----cCccceEEecCCCCeeEecccCCceecccccc-
Confidence            233333333344444444443322    44443 22222222     2467889999999888887 469999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      +.++.....|...+               +++++.|+|.+|++|+.|+.+++|.+... ........|
T Consensus       521 ~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es~~~  572 (577)
T KOG0642|consen  521 GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLESTAH  572 (577)
T ss_pred             cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccch-heeeccccc
Confidence            88998888888754               69999999999999999999999999765 334444444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1.7e-20  Score=157.78  Aligned_cols=267  Identities=14%  Similarity=0.213  Sum_probs=184.8

Q ss_pred             cccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        30 ~h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      .|....+.++|+-+    ..+||.|+.-|.|+|.|+..++.                           ...+.+|.    
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~---------------------------~~~~~ghG----  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC---------------------------SKNYRGHG----  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh---------------------------ccceeccC----
Confidence            35667888888753    46899999999999999987765                           47789999    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ..|+.+.|+| .+.+++++++.|.+|++|++++..+..+...                              
T Consensus       136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG------------------------------  176 (385)
T KOG1034|consen  136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGG------------------------------  176 (385)
T ss_pred             --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecc------------------------------
Confidence                    8999999987 4557999999999999999999987765321                              


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc--eeEEe-----------------ecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIV-----------------DMK  245 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~-----------------~~~  245 (487)
                                    ..+|.+.|.++.|+++|.+|++| .|.+|++|++....-  .++..                 ..+
T Consensus       177 --------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  177 --------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             --------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence                          37999999999999999999999 999999999983210  00000                 000


Q ss_pred             C-CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEE--E
Q 011368          246 P-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIK--F  321 (487)
Q Consensus       246 ~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~--~  321 (487)
                      . .+..-|...|.|+.|-  | .++++=+-++.|..|.... ++.+    .....-.........+.-....|+-+.  |
T Consensus       243 ~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~----~~vkp~es~~Ti~~~~~~~~c~iWfirf~~  315 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESI----HNVKPPESATTILGEFDYPMCDIWFIRFAF  315 (385)
T ss_pred             cccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhh----hccCCCccceeeeeEeccCccceEEEEEee
Confidence            0 0123366667777775  4 6889988899999998732 1111    000000000000011222234555554  4


Q ss_pred             cCCCCEEEEEeC-CeEEEEeCCCCCcee-eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          322 ANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       322 s~~~~~l~s~~d-~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      .|-+++||.|.. |.|++||++....+. .++..+.             +...|...+||.||..|+..++|++|.-||.
T Consensus       316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-------------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-------------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-------------ccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            577889999875 999999998633221 1222111             1113368999999999999999999999986


Q ss_pred             C
Q 011368          400 G  400 (487)
Q Consensus       400 ~  400 (487)
                      -
T Consensus       383 v  383 (385)
T KOG1034|consen  383 V  383 (385)
T ss_pred             e
Confidence            4

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.6e-18  Score=164.14  Aligned_cols=381  Identities=15%  Similarity=0.135  Sum_probs=230.3

Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      ...||+|+++++... +..|.||...++++.                           +.+.+|.            .++
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i---------------------------~~l~~~~------------a~l   60 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECI---------------------------TSLEDHT------------APL   60 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhh---------------------------hhccccc------------Ccc
Confidence            346999999888775 458999999999874                           6889998            899


Q ss_pred             eEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeee----------ecccccc-ccccccC------
Q 011368          117 NRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE----------NTLLAEK-NFMNEHN------  178 (487)
Q Consensus       117 ~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~------  178 (487)
                      ..+.+.|++.. .++.+++.||.|++||...+.+++....+...-+...          .+.+.+. ..+....      
T Consensus        61 ~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q  140 (792)
T KOG1963|consen   61 TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ  140 (792)
T ss_pred             ceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccc
Confidence            99999876554 5677899999999999999888776655443322211          1111110 0000000      


Q ss_pred             ----------------------------CCCcceeeee------eeeccceeee-----ecccCCCceeEEEeCCCCCEE
Q 011368          179 ----------------------------PPSFAHGYHL------EWTENMATKV-----YPHAHDFNINSISNNSDCETF  219 (487)
Q Consensus       179 ----------------------------~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~v~~i~~s~~~~~l  219 (487)
                                                  .....+....      .|......+.     .-..|...+++.+++|+++++
T Consensus       141 ~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~  220 (792)
T KOG1963|consen  141 SSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYL  220 (792)
T ss_pred             eeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceE
Confidence                                        0000000000      0221111111     113466678999999999999


Q ss_pred             EEe-cCCeEEEEEccC-CCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeec
Q 011368          220 VSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  297 (487)
Q Consensus       220 ~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  297 (487)
                      |+| .||.|.+|.--. ......     ...+.=|...|.+++|+++| .+|++|+.+|.+.+|.+.+++.     +.+.
T Consensus       221 Aa~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfLP  289 (792)
T KOG1963|consen  221 AAGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFLP  289 (792)
T ss_pred             EEeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----cccc
Confidence            999 999999996442 121111     12345688899999999999 9999999999999999998762     1111


Q ss_pred             ccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccc----------------
Q 011368          298 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPK----------------  360 (487)
Q Consensus       298 ~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------------  360 (487)
                                   ...+.|..+.+|||+.+.+.. .|+.|.+-...+ ......+.+.....+.                
T Consensus       290 -------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp  355 (792)
T KOG1963|consen  290 -------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP  355 (792)
T ss_pred             -------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcC
Confidence                         125689999999999977764 688988887643 2222222221111000                


Q ss_pred             ---------------cccccCCCCcce------------------eeEEEEcCCCCEEEEEc--------CC--CcEEEE
Q 011368          361 ---------------LCDLYNNDSIFD------------------KFECSVSGDGLHFATGS--------YS--NLLRIF  397 (487)
Q Consensus       361 ---------------~~~~~~~~~~~~------------------~~~~~~s~d~~~l~sg~--------~d--g~i~iw  397 (487)
                                     ..+++....++.                  +++++.+-.|.+++|+-        .|  ..+++|
T Consensus       356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW  435 (792)
T KOG1963|consen  356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW  435 (792)
T ss_pred             CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence                           001111111110                  12222333344444431        11  234555


Q ss_pred             EeCCCCce----eEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC--CCcc------c--c--ccccCC
Q 011368          398 SHGVGSAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHH------E--L--SYNLSS  460 (487)
Q Consensus       398 d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~------~--~--~~~~~~  460 (487)
                      ........    ......|.......++.+......     .++.+.++. ++|..  .+..      .  .  ..-|..
T Consensus       436 ~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~-----~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~  510 (792)
T KOG1963|consen  436 QYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVR-----CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT  510 (792)
T ss_pred             EEcCCcceeEEEEEEecCCCceeEEEEEecCcccce-----eEEeccCCeEEEEEEecccccCcCccceEEeeeeccccC
Confidence            55433211    112234655555555554322223     788889998 99922  1010      0  0  112567


Q ss_pred             CeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368          461 KLLHLAWHPTTNLIACANGNSLFFHYA  487 (487)
Q Consensus       461 ~v~~~~~spd~~~la~~s~~~~~i~~~  487 (487)
                      +++..+|+.||..||++.+|.+.+|..
T Consensus       511 ~i~a~~fs~dGslla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  511 PITALCFSQDGSLLAVSFDDTITIWDY  537 (792)
T ss_pred             cccchhhcCCCcEEEEecCCEEEEecC
Confidence            899999999999999999999999963

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=2.8e-20  Score=164.54  Aligned_cols=222  Identities=14%  Similarity=0.184  Sum_probs=177.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .-.|++......|+++|+..+.|+|||+.....                           .+.+++|+            
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~---------------------------hr~lkdh~------------  121 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI---------------------------HRFLKDHQ------------  121 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHH---------------------------hhhccCCc------------
Confidence            445666666668999999999999999874332                           46789999            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|++|.+  +..+.+||+++..|.|.|..+.++......                                        
T Consensus       122 stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f----------------------------------------  159 (673)
T KOG4378|consen  122 STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTF----------------------------------------  159 (673)
T ss_pred             ceeEEEEe--cCCcceeEEeccCCcEEEEecccCccccce----------------------------------------
Confidence            89999999  577899999999999999999887643321                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                            -.+....|+-+.++|..+++.+ + ++|.|.+||+.......       .-.+.|..+...++|+|..+.+|++
T Consensus       160 ------~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-------~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  160 ------TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-------HASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             ------ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-------chhhhccCCcCcceecCCccceEEE
Confidence                  1233455678999998777665 5 99999999999444333       2357899999999999998889999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~  350 (487)
                      .+.|..|.+||.+..+..    ..+..              ..+...++|+++|.+|++|.. |.|..||++....++..
T Consensus       227 VG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             ecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence            999999999999986644    33333              358899999999999999965 99999999988889999


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  382 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  382 (487)
                      +..|...+               ++++|-|..
T Consensus       289 ~sah~~sV---------------t~vafq~s~  305 (673)
T KOG4378|consen  289 RSAHDASV---------------TRVAFQPSP  305 (673)
T ss_pred             eeecccce---------------eEEEeeecc
Confidence            99999865               578876543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=2e-19  Score=154.92  Aligned_cols=296  Identities=17%  Similarity=0.219  Sum_probs=195.7

Q ss_pred             hhhhhhhcCCCCCCccccccCcEEEEEEcC-----CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccC
Q 011368           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (487)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (487)
                      +-+|.+.||.....+.--..=.|+-.+|..     +.++||.        +|+...+..-     ....+.+.+.     
T Consensus         8 ~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf-----~ViPl~k~Gr-----   69 (472)
T KOG0303|consen    8 SSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAF-----LVIPLVKTGR-----   69 (472)
T ss_pred             hhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcce-----eecccccccc-----
Confidence            346778888665555555555677777754     2344443        3333333110     0000000000     


Q ss_pred             CCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (487)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (487)
                        -....-.+.||+            ++|..++|+| .++..||+|+.|.+|.||.+..+.+....              
T Consensus        70 --~d~~~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l--------------  120 (472)
T KOG0303|consen   70 --MDASYPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL--------------  120 (472)
T ss_pred             --cCCCCCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc--------------
Confidence              111234567888            9999999998 56788999999999999999876543221              


Q ss_pred             ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecC
Q 011368          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK  245 (487)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~  245 (487)
                                               .+++.. +.+|...|--++|+|. .+.|+++ .|.+|.+|++.++...+.     
T Consensus       121 -------------------------tepvv~-L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-----  169 (472)
T KOG0303|consen  121 -------------------------TEPVVE-LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-----  169 (472)
T ss_pred             -------------------------ccceEE-EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee-----
Confidence                                     112222 4899999999999995 5677777 999999999997765554     


Q ss_pred             CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC
Q 011368          246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  325 (487)
Q Consensus       246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~  325 (487)
                         +. |...|+++.|+.+| .+|++.+.|..|||||.++++.+    ..-..|..            ..-..+.|-.+|
T Consensus       170 ---l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~heG------------~k~~Raifl~~g  228 (472)
T KOG0303|consen  170 ---LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHEG------------AKPARAIFLASG  228 (472)
T ss_pred             ---cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eecccccC------------CCcceeEEeccC
Confidence               23 99999999999999 99999999999999999999865    22233311            234566788889


Q ss_pred             CEEEEE----eCCeEEEEeCCCCCceeee--eecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEE
Q 011368          326 QHLLSR----DYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFS  398 (487)
Q Consensus       326 ~~l~s~----~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd  398 (487)
                      .++.+|    ++..+-+||...-..++..  +...++                |.---|.+|.+.|. +|-.|+.|+.|.
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG----------------vl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG----------------VLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEEeccCCc----------------eEEeeecCCCCEEEEEecCCcceEEEE
Confidence            866666    2489999998764444322  222222                12344567777665 556799999999


Q ss_pred             eCCCCceeEEEec--cCCccccceEee
Q 011368          399 HGVGSAGGITVEA--GKNENRKPILQA  423 (487)
Q Consensus       399 ~~~~~~~~~~~~~--~~~~v~~~~~~~  423 (487)
                      +.+...-++.+..  ...+-+.+.+-|
T Consensus       293 it~d~P~~hyln~f~S~epQRG~g~mP  319 (472)
T KOG0303|consen  293 ITNEPPFVHYLNTFSSKEPQRGMGFMP  319 (472)
T ss_pred             ecCCCceeEEecccccCCccccccccc
Confidence            9887544444443  344555566655

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=7.7e-19  Score=145.25  Aligned_cols=225  Identities=17%  Similarity=0.235  Sum_probs=157.7

Q ss_pred             cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--CCCCEEEEEeCCCeEE
Q 011368          202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGFVR  279 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~i~  279 (487)
                      .+-+.|.|+.|.|++..+++-.|..|.+|++.........+..+  .-.++....++-+|+|  ++ +.+++ ..|++++
T Consensus       121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdg-nqv~t-t~d~tl~  196 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDG-NQVAT-TSDSTLQ  196 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccc--ccccccceecccccCCCCcc-ceEEE-eCCCcEE
Confidence            55678999999999999988889999999999665533332111  1123556678889999  34 55544 5688999


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE-EEEeC-CeEEEEeCCCCCceeeeeeccccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      .||+++....    ..++.            .|...|..+.|+|+-+++ ++|+| |.|+|||.+....++..+.+|..+
T Consensus       197 ~~D~RT~~~~----~sI~d------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW  260 (370)
T KOG1007|consen  197 FWDLRTMKKN----NSIED------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW  260 (370)
T ss_pred             EEEccchhhh----cchhh------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence            9999986533    22222            246789999999998754 55654 999999999888999999999996


Q ss_pred             ccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc-----eEeeCCcccccc
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-----ILQAAPRARRSS  431 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~  431 (487)
                      +               +++.|+|. .++|++|+.|..|.+|....-....+....+...-...     ...|..++    
T Consensus       261 v---------------W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg----  321 (370)
T KOG1007|consen  261 V---------------WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG----  321 (370)
T ss_pred             E---------------EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc----
Confidence            5               89999994 56788999999999999875432222111111110000     00011122    


Q ss_pred             ccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEE-EEecCCeEEE
Q 011368          432 LSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACANGNSLFF  484 (487)
Q Consensus       432 ~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~l-a~~s~~~~~i  484 (487)
                                         .+..+..|++.|.+++||.-.+++ |+-|.||-.|
T Consensus       322 -------------------~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  322 -------------------QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             -------------------ccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence                               445667899999999999998875 5777777544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=9e-19  Score=159.68  Aligned_cols=133  Identities=17%  Similarity=0.207  Sum_probs=106.8

Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-C
Q 011368          256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-Y  333 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d  333 (487)
                      |+.+.|+|-....|+++++||.|++|.+..+.+..          ....+...++.|...|+++.|+|- ...|++++ |
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd  699 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD  699 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCc----------ccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence            67888888776899999999999999998765431          111233446678899999999985 44666665 5


Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      -+|++||+++ ......+.+|...+               ++++|||||+.+|+.+.||+|++|+-+.++..+++-++..
T Consensus       700 ~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv  763 (1012)
T KOG1445|consen  700 STIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV  763 (1012)
T ss_pred             ceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence            9999999997 88888999999854               6999999999999999999999999998877666555544


Q ss_pred             C
Q 011368          414 N  414 (487)
Q Consensus       414 ~  414 (487)
                      +
T Consensus       764 g  764 (1012)
T KOG1445|consen  764 G  764 (1012)
T ss_pred             c
Confidence            3

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.85  E-value=1.9e-19  Score=160.84  Aligned_cols=271  Identities=14%  Similarity=0.219  Sum_probs=191.3

Q ss_pred             CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (487)
Q Consensus        45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~  124 (487)
                      ..|+.++.||.+.|.+-...                            .-....+|.            ++|.+-+|  +
T Consensus        76 d~~~i~s~DGkf~il~k~~r----------------------------VE~sv~AH~------------~A~~~gRW--~  113 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR----------------------------VERSISAHA------------AAISSGRW--S  113 (737)
T ss_pred             ceEEEEcCCceEEEecccch----------------------------hhhhhhhhh------------hhhhhccc--C
Confidence            46777888999998874322                            235678888            99999999  6


Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      ++|.-|++++.||.|++|.-.+.- ..                                               .+....
T Consensus       114 ~dGtgLlt~GEDG~iKiWSrsGML-RS-----------------------------------------------tl~Q~~  145 (737)
T KOG1524|consen  114 PDGAGLLTAGEDGVIKIWSRSGML-RS-----------------------------------------------TVVQNE  145 (737)
T ss_pred             CCCceeeeecCCceEEEEeccchH-HH-----------------------------------------------HHhhcC
Confidence            899999999999999999865431 11                                               124567


Q ss_pred             CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368          205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  284 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~  284 (487)
                      .+|+|++|.|+.+.++.|..+.+.|=-+..+.+.+        ...+|.+-|.++.|+|.. +++++|++|-..++||-.
T Consensus       146 ~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             ceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEEEEeecCccc-cceeecCCceeEEeeccc
Confidence            88999999999999999977788877777544443        467999999999999998 999999999999999977


Q ss_pred             CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368          285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  364 (487)
Q Consensus       285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  364 (487)
                      ...       .|..           ..|+.+|++++|+|+ +.++.++.+++|+=..+.            +        
T Consensus       217 G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~------------G--------  257 (737)
T KOG1524|consen  217 GAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV------------G--------  257 (737)
T ss_pred             Ccc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCCc------------c--------
Confidence            542       2222           235789999999999 677778777777322211            1        


Q ss_pred             cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccccee
Q 011368          365 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAH  444 (487)
Q Consensus       365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~  444 (487)
                          ++   +.++||+||..+++|+..|.+.+=.+-........++....+-..+...                      
T Consensus       258 ----Si---fnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vr----------------------  308 (737)
T KOG1524|consen  258 ----SI---FNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVR----------------------  308 (737)
T ss_pred             ----ce---EEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEee----------------------
Confidence                22   5899999999999999999877655543322222222211111111111                      


Q ss_pred             cCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          445 ENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       445 ~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                        ...........+...|...+  -...+|++++...+|+|+
T Consensus       309 --dV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys  346 (737)
T KOG1524|consen  309 --DVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS  346 (737)
T ss_pred             --hhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence              11112234455666666555  446788888888899986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=2.7e-19  Score=161.97  Aligned_cols=249  Identities=14%  Similarity=0.181  Sum_probs=174.3

Q ss_pred             eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      ++...++||+            +.|.+|..  .+.|.+|++|+.||+|+||.+.++.++...                  
T Consensus       391 ~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~------------------  438 (733)
T KOG0650|consen  391 RCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTV------------------  438 (733)
T ss_pred             eeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEE------------------
Confidence            4567789999            99999999  568999999999999999999999876652                  


Q ss_pred             ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCC--EEEEecCCeEEEEEccCCCceeE-----Eee-
Q 011368          172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFN-----IVD-  243 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~d~~i~iwd~~~~~~~~~-----~~~-  243 (487)
                                                    ...+.|.|++|+|.+.  .||++.+..+.|-+..-+.+...     .+. 
T Consensus       439 ------------------------------~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~  488 (733)
T KOG0650|consen  439 ------------------------------QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS  488 (733)
T ss_pred             ------------------------------eecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence                                          2344677888877543  44445333354444332211000     000 


Q ss_pred             c----C-------------------CCCCCCCCCcEEEEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeec
Q 011368          244 M----K-------------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILR  297 (487)
Q Consensus       244 ~----~-------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~  297 (487)
                      .    .                   ....-.|...|..+.|+..| .+|++...+   ..|.|+++......    .-|.
T Consensus       489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF~  563 (733)
T KOG0650|consen  489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPFR  563 (733)
T ss_pred             CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cchh
Confidence            0    0                   00112467789999999999 999998764   47888888765432    2222


Q ss_pred             ccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEE
Q 011368          298 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  377 (487)
Q Consensus       298 ~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (487)
                      .             -.+.|.++.|+|...+|+.++...|+|||+.. ...+..+.....++               ..++
T Consensus       564 k-------------skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi---------------S~ms  614 (733)
T KOG0650|consen  564 K-------------SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI---------------SSMS  614 (733)
T ss_pred             h-------------cCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee---------------eeee
Confidence            1             24689999999999999999989999999976 66666655444433               4899


Q ss_pred             EcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce
Q 011368          378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  443 (487)
Q Consensus       378 ~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~  443 (487)
                      ++|.|..|+.|+.|+.+..+|+.-.....+++..|...++.++|.+.       +.++++|+.|+.
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgt  673 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGT  673 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCc
Confidence            99999999999999999999998776666666666666666665542       333555555554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=1.7e-20  Score=175.72  Aligned_cols=249  Identities=17%  Similarity=0.230  Sum_probs=187.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.++|+|+.|...|.++++|+.|..|+||..++..+                           +.++.||+      
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---------------------------lAs~rGhs------  232 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---------------------------LASCRGHS------  232 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhh---------------------------hccCCCCc------
Confidence            567999999999999999999999999999999888765                           58899999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            +.|+.++.  +.+..++++++.|..|++|.+..+....+                                   
T Consensus       233 ------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv-----------------------------------  269 (1113)
T KOG0644|consen  233 ------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV-----------------------------------  269 (1113)
T ss_pred             ------cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH-----------------------------------
Confidence                  88999998  46677889999999999999999876544                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~  266 (487)
                                  +.+|++.|++++|+|-.   .++.||++++||.+-.-   .++  .|..+.. ...-+.++.|...+ 
T Consensus       270 ------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~---~~y--~prp~~~~~~~~~~s~~~~~~~-  328 (1113)
T KOG0644|consen  270 ------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP---RIY--VPRPLKFTEKDLVDSILFENNG-  328 (1113)
T ss_pred             ------------HhccccceeeeccCccc---cCCCCCceEeccccccc---ccc--CCCCCCcccccceeeeeccccc-
Confidence                        58999999999999865   33499999999998111   111  1222221 22456677787887 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEE-eCCeEEEEeCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMD  344 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~-~d~~i~iwd~~~~  344 (487)
                      .-+++++.|+.-..|.+..-.        +.               ...+.-+..+.+- .+.+++ .+..+.+|++.+ 
T Consensus       329 ~~f~Tgs~d~ea~n~e~~~l~--------~~---------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-  384 (1113)
T KOG0644|consen  329 DRFLTGSRDGEARNHEFEQLA--------WR---------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-  384 (1113)
T ss_pred             cccccccCCcccccchhhHhh--------hh---------------ccceEEEeccccccccceeeeeeeEeeeeeccc-
Confidence            889999999998888765421        11               1222223333232 344444 568899999986 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      +..+..+.+|...+               ..+.++| |.+...+++.||...|||+..|........+|
T Consensus       385 g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh  438 (1113)
T KOG0644|consen  385 GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH  438 (1113)
T ss_pred             chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence            88888888888754               4789999 55566799999999999999886655544443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=134.84  Aligned_cols=260  Identities=15%  Similarity=0.166  Sum_probs=176.8

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .|.+-+++|.+++|++|+.+|.|.+..+......                 ....|.-..+..+++|.            
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd------------   62 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD------------   62 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC------------
Confidence            4667789999999999999999999997654321                 11222333456668898            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccce-eEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ++|+.++|+    +.+|++|+ ||.|+-|..+.... ...+                                  ..|..
T Consensus        63 gpiy~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~~K----------------------------------~lwe~  103 (325)
T KOG0649|consen   63 GPIYYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLATK----------------------------------RLWEV  103 (325)
T ss_pred             CCeeeeeee----hhheeecc-CceEEEeeehhhhhhccch----------------------------------hhhhh
Confidence            999999994    34566654 59999998875432 1110                                  00111


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                      ..+.+.- ...-..|+++...|..+-++.+ .|+.++-||+++ ++..+       ++.+|++.|.++.--... ..+++
T Consensus       104 ~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r-------~~rGHtDYvH~vv~R~~~-~qils  173 (325)
T KOG0649|consen  104 KIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQR-------EYRGHTDYVHSVVGRNAN-GQILS  173 (325)
T ss_pred             cCccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEE-------EEcCCcceeeeeeecccC-cceee
Confidence            1111110 1223568999999876666666 999999999994 44443       468999999999985444 68999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCcccccccc-ccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~  350 (487)
                      |++||++|+||+++++..    +.++.    ...++.+..| ..+|.+++.+  ..+|++|....+.+|.++. .++...
T Consensus       174 G~EDGtvRvWd~kt~k~v----~~ie~----yk~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrs-se~t~v  242 (325)
T KOG0649|consen  174 GAEDGTVRVWDTKTQKHV----SMIEP----YKNPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRS-SESTCV  242 (325)
T ss_pred             cCCCccEEEEecccccee----EEecc----ccChhhcCcccCceeEEEecc--CceEEecCCCceeEEeccC-CCceEE
Confidence            999999999999998754    44333    1111222222 2456666655  5699999888999999997 666666


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +......                ..+.|.  ...+++++..+.+.-|.+.
T Consensus       243 fpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  243 FPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             Eecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence            6543321                256675  3467778888899999886

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=1e-18  Score=144.49  Aligned_cols=271  Identities=17%  Similarity=0.192  Sum_probs=177.6

Q ss_pred             ccccCcEEEEEEcCCC-CEEEEEecC-------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec-C
Q 011368           29 LQDVDIVSAIEFDKTG-DYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-S   99 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~-~~l~~g~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   99 (487)
                      ..|.+.|+.++-+|-. +.|+++..+       ..+.||.+......                  ......+.+..+. .
T Consensus        60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldte  121 (370)
T KOG1007|consen   60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTE  121 (370)
T ss_pred             hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHH
Confidence            3467889999999955 566666432       24679998654321                  1111222222232 1


Q ss_pred             CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccccee-EeeecCCCCceeeeeccccccccccccC
Q 011368          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (487)
Q Consensus       100 h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                      +-            +.|.||.|.  |++..+++-. |..|.+|++..+..+ .......                     
T Consensus       122 av------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~---------------------  165 (370)
T KOG1007|consen  122 AV------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE---------------------  165 (370)
T ss_pred             Hh------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecccc---------------------
Confidence            22            689999996  4677777765 889999999887542 1110000                     


Q ss_pred             CCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368          179 PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  256 (487)
                                           -.++....++-+|+|  +++.+++..|+++..||+++..+...+       -.+|...|
T Consensus       166 ---------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI-------~dAHgq~v  217 (370)
T KOG1007|consen  166 ---------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI-------EDAHGQRV  217 (370)
T ss_pred             ---------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch-------hhhhccee
Confidence                                 134667788889998  789999999999999999966654433       25788889


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE-eCC
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-DYM  334 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~d~  334 (487)
                      ..+.|+|+...+|++++.||.|+|||.+..+..   ++.+             .+|..+|+++.|+|.-. +|++| +|.
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el-------------~~HsHWvW~VRfn~~hdqLiLs~~SDs  281 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQEL-------------PGHSHWVWAVRFNPEHDQLILSGGSDS  281 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCcc---cccc-------------CCCceEEEEEEecCccceEEEecCCCc
Confidence            999999998678999999999999999986532   2333             34688999999999654 55565 579


Q ss_pred             eEEEEeCCCCCc-eeee-------eecccc--cccccc-----cc-cCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEE
Q 011368          335 NLKLWDIRMDST-PVAT-------FKIHEH--LRPKLC-----DL-YNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIF  397 (487)
Q Consensus       335 ~i~iwd~~~~~~-~~~~-------~~~~~~--~~~~~~-----~~-~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iw  397 (487)
                      .|.+|....-.. +...       ...+..  ....+.     .+ -++|++   .+++||.- .-.+|+-++||.+.|=
T Consensus       282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV---Y~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV---YALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce---EEEeeccCCCeeEEEeccCceEEee
Confidence            999997643110 0000       000000  000000     11 124455   49999974 4457788999999887


Q ss_pred             EeC
Q 011368          398 SHG  400 (487)
Q Consensus       398 d~~  400 (487)
                      .+.
T Consensus       359 ~V~  361 (370)
T KOG1007|consen  359 SVP  361 (370)
T ss_pred             cCC
Confidence            665

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=1.5e-18  Score=149.49  Aligned_cols=213  Identities=13%  Similarity=0.133  Sum_probs=162.5

Q ss_pred             cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .-+|+.+|..++|+| +...||+|+.|-+|.||++..+-..                    .+..+++..|.||.     
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~-----  131 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ-----  131 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc-----
Confidence            456999999999999 5578999999999999998766442                    33446788999999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.-|+|+|.. .+.|++++.|.+|.+||+.+++....                                  
T Consensus       132 -------rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~----------------------------------  169 (472)
T KOG0303|consen  132 -------RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT----------------------------------  169 (472)
T ss_pred             -------eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee----------------------------------
Confidence                   899999999854 56899999999999999999875433                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-cEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~  264 (487)
                                    ..|.+.|++++|+.||.+|+++ .|+.|++||.+++. .+..       -.+|.+ ....+.|-.+
T Consensus       170 --------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e-------~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  170 --------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSE-------GVAHEGAKPARAIFLAS  227 (472)
T ss_pred             --------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeee-------cccccCCCcceeEEecc
Confidence                          3499999999999999999998 99999999999544 3321       234543 3456778888


Q ss_pred             CCCEEEEEe---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE--eCCeEEEE
Q 011368          265 YCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLW  339 (487)
Q Consensus       265 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~--~d~~i~iw  339 (487)
                      | .++.+|-   .++.+-+||..+-+... -...+..              .+.|.---|.+|...+..+  +|+.||.|
T Consensus       228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  228 G-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             C-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            8 7555543   37889999987744321 1122333              4567777788998877654  57999999


Q ss_pred             eCCCCC
Q 011368          340 DIRMDS  345 (487)
Q Consensus       340 d~~~~~  345 (487)
                      .+..+.
T Consensus       292 Eit~d~  297 (472)
T KOG0303|consen  292 EITNEP  297 (472)
T ss_pred             EecCCC
Confidence            997633

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=3.1e-16  Score=151.47  Aligned_cols=324  Identities=21%  Similarity=0.346  Sum_probs=224.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...+.++.|.+.+..++.++.|+.+.+|+......                          ....+.++..     
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~-----  109 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD-----  109 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence            456889999999999999999999999999999876631                          2344555330     


Q ss_pred             cccccccceeEEEEEecCCCc-EEEEEeC-CCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                            ..+..+.+. .+++. .++..+. |+.+.+|+... ......                                
T Consensus       110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------------------  150 (466)
T COG2319         110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--------------------------------  150 (466)
T ss_pred             ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------------------------
Confidence                  257777775 56666 4555444 99999999987 332222                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                     +..|...|..++|+|+++.++++ . |+.+++|++.. .....       .+.+|...|.+++|+
T Consensus       151 ---------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~v~~~~~~  207 (466)
T COG2319         151 ---------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLS-------TLAGHTDPVSSLAFS  207 (466)
T ss_pred             ---------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEE-------eeccCCCceEEEEEc
Confidence                           37899999999999999988888 5 99999999995 33333       245688999999999


Q ss_pred             cCCCC-EEEEEeCCCeEEEEEccCCccccccce-eecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368          263 PIYCN-LLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  339 (487)
Q Consensus       263 p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw  339 (487)
                      |++ . .+++++.|+.|++||...+...    . .+..             |.... ...|+|++.++++++ ++.+++|
T Consensus       208 ~~~-~~~~~~~~~d~~i~~wd~~~~~~~----~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~  268 (466)
T COG2319         208 PDG-GLLIASGSSDGTIRLWDLSTGKLL----RSTLSG-------------HSDSV-VSSFSPDGSLLASGSSDGTIRLW  268 (466)
T ss_pred             CCc-ceEEEEecCCCcEEEEECCCCcEE----eeecCC-------------CCcce-eEeECCCCCEEEEecCCCcEEEe
Confidence            998 6 5555589999999988855433    2 3444             23443 228999998887664 6999999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEE-eccCCcccc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV-EAGKNENRK  418 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~  418 (487)
                      +++.....+..+..|...+               .++.|+|++..+++++.|+.+.+|+..+........ ..|...+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
T COG2319         269 DLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS  333 (466)
T ss_pred             eecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE
Confidence            9986443244444443322               588999988898889999999999888774433332 477777888


Q ss_pred             ceEeeCCccccccccceeee-cccce-ecCCCCCcc-ccccccCCCeEEEEEcCCCCEEEE-ec-CCeEEEEe
Q 011368          419 PILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHPTTNLIAC-AN-GNSLFFHY  486 (487)
Q Consensus       419 ~~~~~~~~~~~~~~~~l~~g-~~~~~-~~w~~~~~~-~~~~~~~~~v~~~~~spd~~~la~-~s-~~~~~i~~  486 (487)
                      +.+ . .++..     +..+ ..++. .+|...... .........+..+.+++ ...++. +. ...+.+|.
T Consensus       334 ~~~-~-~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  398 (466)
T COG2319         334 LSF-S-PDGSL-----LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWD  398 (466)
T ss_pred             EEE-C-CCCCE-----EEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence            888 5 33222     3444 56655 668554333 11122222388999999 633333 33 44577775

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=1.3e-18  Score=159.56  Aligned_cols=264  Identities=13%  Similarity=0.139  Sum_probs=193.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|+.++|  .|||..|+.+..+ .+.+||..+|.....                                         
T Consensus        13 hci~d~af--kPDGsqL~lAAg~-rlliyD~ndG~llqt-----------------------------------------   48 (1081)
T KOG1538|consen   13 HCINDIAF--KPDGTQLILAAGS-RLLVYDTSDGTLLQP-----------------------------------------   48 (1081)
T ss_pred             cchheeEE--CCCCceEEEecCC-EEEEEeCCCcccccc-----------------------------------------
Confidence            35899999  6899888877654 689999999876654                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|.+.|+|++|+.||+.+++| .|..|.+|.-+-.+. ++         ..|.+.|.|+.|+|-. ..|+++
T Consensus        49 ------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk---------YSH~D~IQCMsFNP~~-h~LasC  111 (1081)
T KOG1538|consen   49 ------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK---------YSHNDAIQCMSFNPIT-HQLASC  111 (1081)
T ss_pred             ------cccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee---------eccCCeeeEeecCchH-HHhhhc
Confidence                  48999999999999999999999 999999998774432 22         3699999999999998 888888


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~  351 (487)
                      +-. ..-+|...+....     ....              ...+.+++|..||++++.|. +|+|.+-+-.  +++...+
T Consensus       112 sLs-dFglWS~~qK~V~-----K~ks--------------s~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I  169 (1081)
T KOG1538|consen  112 SLS-DFGLWSPEQKSVS-----KHKS--------------SSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKI  169 (1081)
T ss_pred             chh-hccccChhhhhHH-----hhhh--------------heeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEE
Confidence            754 3578987765432     1111              35789999999999999994 6999998654  3333333


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCC-----CEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-----LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      ..+.+..         ..   |++++|+|..     ..+++.....++.+|.+... .....-.-..+| -++.+.+  +
T Consensus       170 ~Rpgg~N---------sp---iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP-~CisYf~--N  233 (1081)
T KOG1538|consen  170 ERPGGSN---------SP---IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDP-CCISYFT--N  233 (1081)
T ss_pred             eCCCCCC---------CC---ceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCc-hhheecc--C
Confidence            3322211         12   2699999953     36788888888888887632 211110001111 1333333  7


Q ss_pred             cccccccceeeecccce-ecC-CCCCccccccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368          427 ARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  481 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-~~w-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~  481 (487)
                      |.+     +..|+.|+. +++ ..+-.+.+...++..|..++.+|.+..+++|+.|+
T Consensus       234 GEy-----~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  234 GEY-----ILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             CcE-----EEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence            777     888888888 888 66666777778999999999999999999999776

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.8e-18  Score=141.30  Aligned_cols=296  Identities=12%  Similarity=0.122  Sum_probs=193.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK  108 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~  108 (487)
                      .|...|+|+.|-.+++ |.+|..-|.|.+|.+.+....                           ..+++ |.       
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~-------   56 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR-------   56 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence            4788999999998876 889999999999999887642                           44553 33       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCC-ceeeeeccccccc---cccccCCCCcce
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-FVSSENTLLAEKN---FMNEHNPPSFAH  184 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~  184 (487)
                           ..|+.+.-.  |+ ..+.+-+.|..+.+|++..+....+.....+. ..|-+++......   .+......... 
T Consensus        57 -----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-  127 (323)
T KOG0322|consen   57 -----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-  127 (323)
T ss_pred             -----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-
Confidence                 667878764  33 57889999999999999987666554322221 1112222221111   11111111111 


Q ss_pred             eeeeeeeccceeee---ecccCCCceeEEEeCC-CCC--EEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCc
Q 011368          185 GYHLEWTENMATKV---YPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEV  255 (487)
Q Consensus       185 ~~~~~~~~~~~~~~---~~~~~~~~v~~i~~s~-~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~  255 (487)
                      ..............   ...+..+.+.|..+.. ++.  ++++| .+|.+.+||+.++.+.+..-...  ......|..+
T Consensus       128 ~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp  207 (323)
T KOG0322|consen  128 THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP  207 (323)
T ss_pred             hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence            00000000001110   0124456677777533 233  34557 99999999999764433221000  0123568889


Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC
Q 011368          256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  334 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~  334 (487)
                      |.++.+.+.- ..=++|+.+..+..|.+.......+.......             ....|..+.+-||++.+|+++ |+
T Consensus       208 vlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-------------knpGv~gvrIRpD~KIlATAGWD~  273 (323)
T KOG0322|consen  208 VLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL-------------KNPGVSGVRIRPDGKILATAGWDH  273 (323)
T ss_pred             ceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe-------------cCCCccceEEccCCcEEeecccCC
Confidence            9999999865 66678888888999988754211111111111             125688999999999999976 79


Q ss_pred             eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      .||||..++ .+++..++.|...+               .+++|+||...+|+++.|++|.+|++
T Consensus       274 RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  274 RIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence            999999998 99999999999755               69999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=3.1e-18  Score=148.24  Aligned_cols=281  Identities=19%  Similarity=0.167  Sum_probs=182.8

Q ss_pred             cceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      .+|..+.|.+  ++. .+++|+.|..|++|.+..+....-.     .   .+                            
T Consensus        14 ~pv~s~dfq~--n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~---~V----------------------------   55 (434)
T KOG1009|consen   14 EPVYSVDFQK--NSLNKLATAGGDKDIRIWKVNRSEPGGGD-----M---KV----------------------------   55 (434)
T ss_pred             CceEEEEecc--CcccceecccCccceeeeeeeecCCCCCc-----e---eE----------------------------
Confidence            6799999963  443 8999999999999999765422100     0   00                            


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC------C------ceeEEeecCCCCCCCCCCcEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------D------QCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~------~------~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                        .....+..|...|+++.|+|+|.++|+| ++|.|.+|.....      .      +.+.+    ...+.+|...|+.+
T Consensus        56 --~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v----~k~lr~h~~diydL  129 (434)
T KOG1009|consen   56 --EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV----KKVLRGHRDDIYDL  129 (434)
T ss_pred             --EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEE----EEEecccccchhhh
Confidence              0011158999999999999999999999 9999999977610      0      00111    12356799999999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEE
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL  338 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~i  338 (487)
                      +|+|++ .++++++.|..+++||+..+.+.    ..+..             |...+..++|.|-++++++- .|...+.
T Consensus       130 ~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~~~d-------------h~~yvqgvawDpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  130 AWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AILDD-------------HEHYVQGVAWDPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             hccCCC-ceeeeeeccceEEEEEeccceeE----eeccc-------------cccccceeecchhhhhhhhhccCcccce
Confidence            999999 99999999999999999999765    55555             57899999999999999984 4566677


Q ss_pred             EeCCCCCceeeeee-----c--ccccccccccccCCCCcce-eeEEEEcCCCCEEEEEcC----C-----CcEEEEEeCC
Q 011368          339 WDIRMDSTPVATFK-----I--HEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSY----S-----NLLRIFSHGV  401 (487)
Q Consensus       339 wd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~sg~~----d-----g~i~iwd~~~  401 (487)
                      +++.. .+.+....     .  ....-.....+++.+.... .+.++|+|||.+|++...    +     +..++++-..
T Consensus       192 ~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~  270 (434)
T KOG1009|consen  192 FSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD  270 (434)
T ss_pred             eeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc
Confidence            66654 22221111     0  0011111222444443322 157999999999987643    1     2345555554


Q ss_pred             CCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCC-CeEEEEEcCCCCEEEEecCC
Q 011368          402 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS-KLLHLAWHPTTNLIACANGN  480 (487)
Q Consensus       402 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~-~v~~~~~spd~~~la~~s~~  480 (487)
                      .+.....+.+...+...+.++|.                           ...+..... +.  +---|.+-.+|+|+.|
T Consensus       271 l~rP~~~lp~~~k~~lavr~~pV---------------------------y~elrp~~~~~~--~~~lpyrlvfaiAt~~  321 (434)
T KOG1009|consen  271 LKRPAARLPSPKKPALAVRFSPV---------------------------YYELRPLSSEKF--LFVLPYRLVFAIATKN  321 (434)
T ss_pred             ccCceeecCCCCcceEEEEeeee---------------------------EEEecccccccc--ccccccceEEEEeecc
Confidence            44444555555555555555552                           001111100 00  1122677788999999


Q ss_pred             eEEEEe
Q 011368          481 SLFFHY  486 (487)
Q Consensus       481 ~~~i~~  486 (487)
                      .+|||.
T Consensus       322 svyvyd  327 (434)
T KOG1009|consen  322 SVYVYD  327 (434)
T ss_pred             eEEEec
Confidence            999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.5e-18  Score=146.47  Aligned_cols=301  Identities=15%  Similarity=0.155  Sum_probs=205.3

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      .+.+.+|.            +.|+++.|  +.++++|++|+.|..+++|++..--..+.                     
T Consensus        49 qKD~~~H~------------GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~---------------------   93 (609)
T KOG4227|consen   49 QKDVREHT------------GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT---------------------   93 (609)
T ss_pred             hhhhhhhc------------cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC---------------------
Confidence            34566777            99999999  57899999999999999999975432221                     


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                         .+++...-..|...|.|++|....+++++| .+++|.+.|+++.. .+-+.     .-...
T Consensus        94 -------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q-si~V~-----~~~~~  148 (609)
T KOG4227|consen   94 -------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ-SIYVA-----NENNN  148 (609)
T ss_pred             -------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce-eeeee-----cccCc
Confidence                               112222224677899999999999999999 99999999999544 33221     11223


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEE
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSR  331 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~  331 (487)
                      .+.|+.+..+|.. +.|++.+.++.|.+||.+......   ..+-.           .........+.|+|...- |++.
T Consensus       149 ~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-----------AN~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  149 RGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-----------ANSGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             ccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-----------cCCCccceeeeecCCCceeEEec
Confidence            3589999999998 999999999999999998764221   11111           011346788999997664 4455


Q ss_pred             eC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          332 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       332 ~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      +. +-+.+||.+.+..++....+.......     ..++    .++-|+|+|..+++--....-.+||+-+....+..+.
T Consensus       214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-----~~~~----M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  214 SETGGPNVFDRRMQARPVYQRSMFKGLPQE-----NTEW----MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             cccCCCCceeeccccchHHhhhccccCccc-----chhh----hheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            54 899999999866666554443322100     0001    3789999999998877777777888886533333332


Q ss_pred             cc------CCccccceEeeCCccccccccceeeecccce-ecCCCC------C-------------------cccccccc
Q 011368          411 AG------KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS------G-------------------HHELSYNL  458 (487)
Q Consensus       411 ~~------~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~------~-------------------~~~~~~~~  458 (487)
                      ..      ...+.++.|..   .+.     +++|+.+-. ++|+..      +                   ....+.+|
T Consensus       285 ~N~~GY~N~~T~KS~~F~~---D~~-----v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH  356 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFID---DYT-----VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH  356 (609)
T ss_pred             CCCCcceeeeeeeeeeeec---cee-----eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc
Confidence            11      12344555653   233     788888877 999221      1                   11134467


Q ss_pred             CCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          459 SSKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       459 ~~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                      ..-++.|.|+|-..+|++.+ .+.+.||+
T Consensus       357 RSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  357 RSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cccccceeecCCcceEeccchhhheeccc
Confidence            77889999999988888666 67788996

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=2.4e-18  Score=151.06  Aligned_cols=244  Identities=16%  Similarity=0.173  Sum_probs=178.9

Q ss_pred             ccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          201 HAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      .-+..+|++++|+|..  +++++| ..|.|-+||+.++++...-+    ..+..|..+|.++.|+|.....+++.+.||+
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence            5678999999999954  577788 89999999996333221110    1256799999999999998889999999999


Q ss_pred             EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccc
Q 011368          278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      |++-|++....-    ..+..           ......+..+.|+.+...++.+++ |...+||+++++.....+..|..
T Consensus       259 iR~~D~~~~i~e----~v~s~-----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  259 IRLQDFEGNISE----EVLSL-----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             eeeeeecchhhH----HHhhc-----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence            999999986421    11111           011357788899988888888876 99999999998887888888887


Q ss_pred             cccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCce---eEEEeccCCccccceEeeCCccccccc
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSL  432 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~  432 (487)
                      .+               ++++++| ...+|||+|.|++++|||++.-...   ....-.|...|.+..|+|. .+.    
T Consensus       324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-~gt----  383 (498)
T KOG4328|consen  324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-GGT----  383 (498)
T ss_pred             cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-CCc----
Confidence            54               6999999 4567999999999999999874322   3556689999999999996 333    


Q ss_pred             cceeeecccce-ecCCCC---Ccc--ccccccC----CC--eEEEEEcCCCCEEEEecC-CeEEEE
Q 011368          433 SNLTRGLYRQA-HENSSS---GHH--ELSYNLS----SK--LLHLAWHPTTNLIACANG-NSLFFH  485 (487)
Q Consensus       433 ~~l~~g~~~~~-~~w~~~---~~~--~~~~~~~----~~--v~~~~~spd~~~la~~s~-~~~~i~  485 (487)
                        |++-+.|.. ++|+..   ...  .....|.    ..  ....+|.||.++|++|.. +.|=||
T Consensus       384 --l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~  447 (498)
T KOG4328|consen  384 --LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF  447 (498)
T ss_pred             --eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEE
Confidence              677777777 999552   111  1111222    22  235589999999999883 234444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=3.3e-16  Score=134.32  Aligned_cols=240  Identities=14%  Similarity=0.179  Sum_probs=171.4

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...++.+.|+.+...|..|+.|| .++|+.+....-                           .......          
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---------------------------~~~~~~~----------   46 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---------------------------FSKDTEG----------   46 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---------------------------hcccCCC----------
Confidence            34578888999999999999987 678886543210                           0011111          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                        ..|-.+-|  +  ..++|..+.+.  .+++.++..+..++.                                     
T Consensus        47 --~~IvEmLF--S--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe-------------------------------------   83 (391)
T KOG2110|consen   47 --VSIVEMLF--S--SSLVAIVSIKQPRKLKVVHFKKKTTICE-------------------------------------   83 (391)
T ss_pred             --eEEEEeec--c--cceeEEEecCCCceEEEEEcccCceEEE-------------------------------------
Confidence              34555556  3  34677666544  488888877665543                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                                 ......|.++.++  -+.|+++-...|+|||++.. +.+..+    ...+.+...+.+++.++.+ .++
T Consensus        84 -----------~~fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~M-klLhTI----~t~~~n~~gl~AlS~n~~n-~yl  144 (391)
T KOG2110|consen   84 -----------IFFPTSILAVRMN--RKRLVVCLEESIYIYDIKDM-KLLHTI----ETTPPNPKGLCALSPNNAN-CYL  144 (391)
T ss_pred             -----------EecCCceEEEEEc--cceEEEEEcccEEEEecccc-eeehhh----hccCCCccceEeeccCCCC-ceE
Confidence                       2235668888887  46777773334999999944 444433    1233455667888888777 677


Q ss_pred             EEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-Ce-EEEEeCCCCC
Q 011368          270 AYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LKLWDIRMDS  345 (487)
Q Consensus       270 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~-i~iwd~~~~~  345 (487)
                      +.-+  ..|.|.|||..+-+..    ..+..             |.+.+.+++|+++|.+||++++ |+ |||+.+.. +
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~v----~~I~a-------------H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G  206 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQPV----NTINA-------------HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-G  206 (391)
T ss_pred             EecCCCCCceEEEEEcccceee----eEEEe-------------cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-c
Confidence            7644  3689999999885543    56666             5899999999999999999987 55 79999986 8


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..+..|+.....+             .+.+++|+|++++|++.|..++|+||.++..
T Consensus       207 ~kl~eFRRG~~~~-------------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  207 QKLYEFRRGTYPV-------------SIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             cEeeeeeCCceee-------------EEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            8888887655443             2359999999999999999999999999865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=3e-16  Score=145.39  Aligned_cols=214  Identities=13%  Similarity=0.124  Sum_probs=133.5

Q ss_pred             cceeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      +....+++  +|++++|++++ .++.|.+|++.. +.+.....                                     
T Consensus        35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-------------------------------------   75 (330)
T PRK11028         35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-------------------------------------   75 (330)
T ss_pred             CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeee-------------------------------------
Confidence            44677888  57888887664 688999999973 33322110                                     


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                               .........++++|++++++++  .++.|.+|+++..+.....+    ..+. +.....+++++|++ +++
T Consensus        76 ---------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----~~~~-~~~~~~~~~~~p~g-~~l  140 (330)
T PRK11028         76 ---------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI----QIIE-GLEGCHSANIDPDN-RTL  140 (330)
T ss_pred             ---------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----eecc-CCCcccEeEeCCCC-CEE
Confidence                     1112345689999999998887  68999999997443322111    0111 22346778999999 777


Q ss_pred             EEE-eCCCeEEEEEccCCcccccc-ceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC-
Q 011368          270 AYS-SSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD-  344 (487)
Q Consensus       270 ~~~-~~dg~i~iwd~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~-  344 (487)
                      +++ ..++.|.+||+.+...+... ......          ..  ......++|+|+|++++++.  ++.|.+|++... 
T Consensus       141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~----------~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~  208 (330)
T PRK11028        141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT----------VE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH  208 (330)
T ss_pred             EEeeCCCCEEEEEEECCCCcccccCCCceec----------CC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            554 45799999999863322100 000000          00  13457899999999998774  499999999731 


Q ss_pred             Cc--eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368          345 ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  402 (487)
Q Consensus       345 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~  402 (487)
                      +.  .+..+.......      ..  . .....+.++|++++|+++.. ++.|.+|++...
T Consensus       209 ~~~~~~~~~~~~p~~~------~~--~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        209 GEIECVQTLDMMPADF------SD--T-RWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CCEEEEEEEecCCCcC------CC--C-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            22  222222111100      00  0 01136889999999998864 689999999754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=9e-18  Score=150.33  Aligned_cols=206  Identities=14%  Similarity=0.178  Sum_probs=159.1

Q ss_pred             CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368          217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  295 (487)
Q Consensus       217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  295 (487)
                      ..|+.+ .||.+.|.+-.  ++.-       ....+|.+.+.+-.|+|+| .-|+++++||.|++|.- +|.+.    .+
T Consensus        76 d~~~i~s~DGkf~il~k~--~rVE-------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLR----St  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS--ARVE-------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLR----ST  140 (737)
T ss_pred             ceEEEEcCCceEEEeccc--chhh-------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHH----HH
Confidence            355555 99999887655  2221       2467899999999999999 99999999999999974 44322    11


Q ss_pred             ecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE
Q 011368          296 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  375 (487)
Q Consensus       296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (487)
                      +..             ...+|.|++|.|++.-++-+..+.+.|=.+.. ...+...++|.+.+               .+
T Consensus       141 l~Q-------------~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~  191 (737)
T KOG1524|consen  141 VVQ-------------NEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LS  191 (737)
T ss_pred             Hhh-------------cCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EE
Confidence            111             14689999999999888877667888888875 66677889999876               69


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccc
Q 011368          376 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS  455 (487)
Q Consensus       376 ~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~  455 (487)
                      +.|++.+..|++|++|-..+|||..  +..+..-..|..++++++|.|.   ..     ++.|+.+..++         .
T Consensus       192 ~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd---~~-----~~v~S~nt~R~---------~  252 (737)
T KOG1524|consen  192 LSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE---KD-----YLLWSYNTARF---------S  252 (737)
T ss_pred             eecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc---cc-----eeeeeeeeeee---------c
Confidence            9999999999999999999999975  3467788899999999999995   32     45555443321         1


Q ss_pred             cccCCCeEEEEEcCCCCEEEEecCCeEEEE
Q 011368          456 YNLSSKLLHLAWHPTTNLIACANGNSLFFH  485 (487)
Q Consensus       456 ~~~~~~v~~~~~spd~~~la~~s~~~~~i~  485 (487)
                      ....+.|..++||+||..+++|+..+..++
T Consensus       253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  253 SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            233458999999999999999998875554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=6e-17  Score=153.30  Aligned_cols=276  Identities=16%  Similarity=0.173  Sum_probs=179.7

Q ss_pred             CccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           26 DEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...+.-...|+|++|+|.. .+||.|..+|+|.+||+..+...+                     ....-.....|.   
T Consensus       236 e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s~ls~~~~sh~---  291 (555)
T KOG1587|consen  236 ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PSGLSALEVSHS---  291 (555)
T ss_pred             eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------CcccccccccCC---
Confidence            3344446789999999954 778888899999999998775420                     011112233455   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               .++..+.|..+..+.-|++++.||.|..|+++.-....... ....                         
T Consensus       292 ---------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~-~~~~-------------------------  336 (555)
T KOG1587|consen  292 ---------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL-LLES-------------------------  336 (555)
T ss_pred             ---------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhc-cccc-------------------------
Confidence                     89999999876656669999999999999776432210000 0000                         


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                              ...... -......+++++|.+ +-..++.| .+|.|.-=+....................|.+.|+++.++
T Consensus       337 --------~~~~~~-~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n  407 (555)
T KOG1587|consen  337 --------KKHKGQ-QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN  407 (555)
T ss_pred             --------cccccc-ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence                    000000 013345688999977 45677788 9999876333311111101101112456788999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEE
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLW  339 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iw  339 (487)
                      |-+.+.+++++ |-+++||... ....+    ..+..             +...|++++|||-..-+++ ++ +|.|.+|
T Consensus       408 PF~~k~fls~g-DW~vriWs~~~~~~Pl----~~~~~-------------~~~~v~~vaWSptrpavF~~~d~~G~l~iW  469 (555)
T KOG1587|consen  408 PFYPKNFLSVG-DWTVRIWSEDVIASPL----LSLDS-------------SPDYVTDVAWSPTRPAVFATVDGDGNLDIW  469 (555)
T ss_pred             CCccceeeeec-cceeEeccccCCCCcc----hhhhh-------------ccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence            99966666666 9999999877 32222    33333             2456999999998765554 44 5999999


Q ss_pred             eCCCC-CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          340 DIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       340 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      |+... ..++...+......               +.+.|+++|+.|++|...|.+++|++...
T Consensus       470 DLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  470 DLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhhccccCCccccccccccc---------------ceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            99742 23444444332211               47889999999999999999999999743

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=1.6e-16  Score=155.60  Aligned_cols=295  Identities=17%  Similarity=0.231  Sum_probs=184.6

Q ss_pred             ccccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccc
Q 011368            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (487)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (487)
                      ..++++.|+.....-    .....|+..|..++.+++. .++++|+.||+|++|+......             .+    
T Consensus      1027 ~~~p~~gW~p~G~lV----AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-------------~~---- 1085 (1431)
T KOG1240|consen 1027 VGSPPPGWNPRGILV----AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-------------EG---- 1085 (1431)
T ss_pred             cCCCCCCCCccceEe----ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc-------------Cc----
Confidence            344555665553322    2456678889999988765 9999999999999999764322             10    


Q ss_pred             cCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeee
Q 011368           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (487)
Q Consensus        86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (487)
                         ..++...++.--.            .++.++..+  +.+..+|.++.||.|++.+++........            
T Consensus      1086 ---~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~------------ 1136 (1431)
T KOG1240|consen 1086 ---GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRV------------ 1136 (1431)
T ss_pred             ---ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccce------------
Confidence               1333333333223            678888886  56789999999999999999763211110            


Q ss_pred             ccccccccccccCCCCcceeeeeeeeccceeeeecccCCCce-eEEEeCC-CCC-EEEEe-cCCeEEEEEccCCCceeEE
Q 011368          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNI-NSISNNS-DCE-TFVSA-DDLRINLWNLEISDQCFNI  241 (487)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~s~-~~~-~l~s~-~d~~i~iwd~~~~~~~~~~  241 (487)
                                                 ..+.+..-....+.+ ..-++.. ... .++.+ ..+.|..||+++.......
T Consensus      1137 ---------------------------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1137 ---------------------------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             ---------------------------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence                                       001111101122223 3334433 233 66777 8999999999965443322


Q ss_pred             eecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368          242 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  321 (487)
Q Consensus       242 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~  321 (487)
                            +.+...+.|++++.+|.+ .+++.|+..|.+.+||+|-+..+    ..+.-            .+..+++.+..
T Consensus      1190 ------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~------------P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1190 ------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH------------PARAPIRHVWL 1246 (1431)
T ss_pred             ------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC------------cccCCcceEEe
Confidence                  233445779999999999 89999999999999999987654    33332            12356777766


Q ss_pred             cC---CCCEEEEE-e-C-CeEEEEeCCCCCceeeeeecccccccccc-cccCC-----CCcceeeEEEEcCCCCEEEEEc
Q 011368          322 AN---DGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLC-DLYNN-----DSIFDKFECSVSGDGLHFATGS  389 (487)
Q Consensus       322 s~---~~~~l~s~-~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~s~d~~~l~sg~  389 (487)
                      +|   .....+++ . . +.|.+|++.+ +.....+...... +.+. ....+     +.. .....++..-+..+.+|+
T Consensus      1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~Ps~~~~kp~~~-~~~~~~~~~~~~~~ltgg 1323 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALPSNDARKPDSL-AGISCGVCEKNGFLLTGG 1323 (1431)
T ss_pred             eccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcccccCCCCCcc-cceeeecccCCceeeecC
Confidence            54   33455554 3 3 8999999987 5555555544211 1111 11111     111 112344444567899999


Q ss_pred             CCCcEEEEEeCCCCc
Q 011368          390 YSNLLRIFSHGVGSA  404 (487)
Q Consensus       390 ~dg~i~iwd~~~~~~  404 (487)
                      .|+.|+.||....+.
T Consensus      1324 sd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1324 SDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             CccceeeccCCCccc
Confidence            999999999987643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=2.2e-16  Score=149.48  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=153.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.++.|+| -+..+++.|+.+|.|.+||+..+.....                                         
T Consensus       243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----------------------------------------  280 (555)
T KOG1587|consen  243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPP-----------------------------------------  280 (555)
T ss_pred             CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCC-----------------------------------------
Confidence            6799999997 4567888999999999999987754211                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC----CCCCCcEEEEEEecCCC
Q 011368          194 MATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM----DDLTEVITSAEFHPIYC  266 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~p~~~  266 (487)
                      .........|..+++.+.|..+.  .-|+++ .||.|..|+++.-..............    ......+++++|.+..+
T Consensus       281 s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p  360 (555)
T KOG1587|consen  281 SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP  360 (555)
T ss_pred             cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence            01111136789999999996543  447777 999999998885443333221111110    01223578999999988


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EEeCCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDYMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~d~~i~iwd~~~~~  345 (487)
                      ..+++|+++|.|.--+....+.-.  ...++.|       ..+..|.+.|.++.++|=+..++ ++.|.+++||.-....
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~-------~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~  431 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGH-------STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA  431 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccc--ccccccc-------ccccccCcceEeeecCCCccceeeeeccceeEeccccCCC
Confidence            999999999988774433322111  0122221       12345678999999999876444 5568999999987436


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .++..+..+...+               ++++|||-. ..++++..||.|.|||+...
T Consensus       432 ~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  432 SPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             Ccchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            7777666655432               699999965 46778888999999999865

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=8.4e-17  Score=155.14  Aligned_cols=305  Identities=17%  Similarity=0.245  Sum_probs=192.8

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      +-..+.|+|-...+++++..-.|+|||.+.++.                           +..|..+...         .
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---------------------------l~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---------------------------LNGFDNGAFP---------D 1109 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCce---------------------------eccccCCCCC---------C
Confidence            466788999998999998677999999987754                           2333333211         2


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc--eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      ..|+.+.+....|..++++|+.||.|+||+--...  ...+.                                  ..|.
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV----------------------------------Taw~ 1155 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV----------------------------------TAWS 1155 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeE----------------------------------Eeec
Confidence            67888998766677889999999999999643221  11110                                  0010


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEE-ecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                      .-...   +.+..+.=.-+.|.....+|++ |+-..|+|||......+..+       ..+....|+++.-+-.++++++
T Consensus      1156 ~Ls~~---~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di-------P~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1156 SLSDQ---LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI-------PYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             ccccc---CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec-------ccCCCccceeecccccCCceEE
Confidence            00000   0111111134567665445555 58899999999954433322       1234455777765533339999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccc--eeEEEEcCCCCE-EEEEe-CCeEEEEeCCCC-C
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQH-LLSRD-YMNLKLWDIRMD-S  345 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--v~~v~~s~~~~~-l~s~~-d~~i~iwd~~~~-~  345 (487)
                      +|..||.|++||.+.... ...+..+..|             +..  |..+.+.++|-- |++|+ +|.|++||++.. .
T Consensus      1226 AGfaDGsvRvyD~R~a~~-ds~v~~~R~h-------------~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPP-DSLVCVYREH-------------NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             EeecCCceEEeecccCCc-cccceeeccc-------------CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            999999999999987542 2233455554             444  888999887654 77775 699999999972 1


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      .....+..|...-          +  +.+++..++....+|+|+. +.|+||++...  .+..++.+      ..|.   
T Consensus      1292 e~~~~iv~~~~yG----------s--~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n------~~F~--- 1347 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYG----------S--ALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYN------PGFM--- 1347 (1387)
T ss_pred             cccceeeeccccC----------c--cceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccC------cccc---
Confidence            1112222222100          0  1268999999999999999 99999999743  22222211      0111   


Q ss_pred             ccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          426 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                  |                  .-...+.+++|||-.-++|+|+.|+ +-||+
T Consensus      1348 ------------~------------------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1348 ------------G------------------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ------------c------------------CcCCCcceeeecchhHhhhhccCCceEEEee
Confidence                        0                  1112557999999999999998665 77775

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=2.6e-17  Score=138.42  Aligned_cols=294  Identities=15%  Similarity=0.194  Sum_probs=212.3

Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      .....|  +|||..|++-+.|..+++|++.......-.......                                ....
T Consensus        52 ~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~--------------------------------~~~~   97 (406)
T KOG2919|consen   52 LKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNF--------------------------------SKHL   97 (406)
T ss_pred             hcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCcccc--------------------------------ccce
Confidence            456789  689999999999999999998643211100000000                                0000


Q ss_pred             eeeecccCCCceeEEEe-------CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC---cEEEEEEecC
Q 011368          196 TKVYPHAHDFNINSISN-------NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---VITSAEFHPI  264 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~-------s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~p~  264 (487)
                        .+-......|+..+|       .|+..+++++ .+.-|++||.-+++.... +     ....|..   ...+++|+|+
T Consensus        98 --~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS-y-----~~ydh~de~taAhsL~Fs~D  169 (406)
T KOG2919|consen   98 --SYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS-Y-----RAYDHQDEYTAAHSLQFSPD  169 (406)
T ss_pred             --eEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc-h-----hhhhhHHhhhhheeEEecCC
Confidence              000223445667766       3678888888 999999999986543221 1     1122332   3468999999


Q ss_pred             CCCEEEEEeCCCeEEEEEc-cCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEeC-CeEEEEeC
Q 011368          265 YCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDI  341 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~d-~~i~iwd~  341 (487)
                      | ..|++| ..+.|+++|+ |.|+.+........+          -.+..+-+.+++|+|-.. .++.|+. ..+-||.-
T Consensus       170 G-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~----------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~  237 (406)
T KOG2919|consen  170 G-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG----------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND  237 (406)
T ss_pred             C-CeEeec-ccceEEEeeccCCCCCCcchhhhhcc----------cccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence            9 777665 5678999999 666644322222221          012256789999999654 7888887 77778877


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccCC-ccccc
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN-ENRKP  419 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~  419 (487)
                      .. ..++..+.+|.+.+               +.++|.++|+.|.+|.. |-.|..||++.-+..+..|..|.+ ....+
T Consensus       238 ~~-~~pl~llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI  301 (406)
T KOG2919|consen  238 DG-RRPLQLLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI  301 (406)
T ss_pred             CC-CCceeeecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE
Confidence            64 88999999999865               79999999999999984 679999999998888999999988 66677


Q ss_pred             eEeeCCccccccccceeeecccce-ecCCC---CCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  484 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i  484 (487)
                      .|--.+++.+     |++|+.+|. ++|+.   +........+...|+.++++|-=+++|+++...+|-
T Consensus       302 ~FDld~~~~~-----LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~  365 (406)
T KOG2919|consen  302 LFDLDPKGEI-----LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK  365 (406)
T ss_pred             EEecCCCCce-----eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence            7777788898     999999999 99944   334555667888999999999999999999876664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=5.2e-17  Score=155.00  Aligned_cols=214  Identities=13%  Similarity=0.137  Sum_probs=144.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|+|+.|+.++.+   ..|++||+.+++...+..                                    
T Consensus       204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------  245 (429)
T PRK01742        204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------  245 (429)
T ss_pred             CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence            77899999  6899999887643   469999998876433210                                    


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEE--EccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                               +.++   ...++|+|||+.|+.+  .++.+.||  |+. .+....        +..+...+..+.|+|+| 
T Consensus       246 ---------~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~~~~~~~~~wSpDG-  303 (429)
T PRK01742        246 ---------FRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSGAGNNTEPSWSPDG-  303 (429)
T ss_pred             ---------CCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccCCCCcCCEEECCCC-
Confidence                     1222   3468999999988875  57766665  554 233222        33455567889999999 


Q ss_pred             CEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368          267 NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~  345 (487)
                      +.|+.++ .+|...||++.......   ..+..              ..  ....|+|||++|+..+...+.+||+.+ +
T Consensus       304 ~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g  363 (429)
T PRK01742        304 QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTLVMINGDNVVKQDLTS-G  363 (429)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEEEEEcCCCEEEEECCC-C
Confidence            7666555 57888899876432110   11111              22  357899999999877555677799976 4


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC-CCceeEEEeccCCccccceEeeC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV-GSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      ...........                 .++.|+|||++|+.++.++.+.+|++.+ .+.....+..|.+.+..++|+|.
T Consensus       364 ~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        364 STEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            43322221111                 2688999999999999999888888642 23457778888888888888873

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=1.3e-15  Score=141.22  Aligned_cols=263  Identities=13%  Similarity=0.106  Sum_probs=163.8

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeC-CcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      .+.+......++++|++++|++++ .++.|.+|+++. +..                         ....... ..    
T Consensus        30 ~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------------~~~~~~~-~~----   79 (330)
T PRK11028         30 VVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------------TFAAESP-LP----   79 (330)
T ss_pred             EEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------------EEeeeec-CC----
Confidence            344445678899999999987765 578899999862 221                         1111111 11    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                              +....++|  +|+++++++++ .++.|.+|++++.. ....                               
T Consensus        80 --------~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~-------------------------------  118 (330)
T PRK11028         80 --------GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAP-------------------------------  118 (330)
T ss_pred             --------CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-------------------------------
Confidence                    34567888  67888888876 58899999996422 1110                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                  ...  ..+.....+++++|++++++++  .++.|.+||+++.+...... ....... .......++|
T Consensus       119 ------------~~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~-~g~~p~~~~~  182 (330)
T PRK11028        119 ------------IQI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV-EGAGPRHMVF  182 (330)
T ss_pred             ------------eee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC-CCCCCceEEE
Confidence                        000  1122346778899999998665  78999999998533321100 0000111 1234678999


Q ss_pred             ecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368          262 HPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL  338 (487)
Q Consensus       262 ~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i  338 (487)
                      +|+| ++++++.. ++.|.+||+............+..++..      +. +......+.++|+|++++++.  ++.|.+
T Consensus       183 ~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        183 HPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FS-DTRWAADIHITPDGRHLYACDRTASLISV  254 (330)
T ss_pred             CCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CC-CCccceeEEECCCCCEEEEecCCCCeEEE
Confidence            9999 88877776 8999999997421000111222110000      00 112345689999999999874  489999


Q ss_pred             EeCCCCCcee---eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCC
Q 011368          339 WDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV  401 (487)
Q Consensus       339 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~  401 (487)
                      |++...+..+   ........+                ..+.++|||++|++++. +++|.+|++..
T Consensus       255 ~~i~~~~~~~~~~~~~~~~~~p----------------~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        255 FSVSEDGSVLSFEGHQPTETQP----------------RGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEeCCCCeEEEeEEEeccccC----------------CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            9997533222   222211111                47999999999998775 89999999853

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.77  E-value=9.7e-17  Score=134.95  Aligned_cols=225  Identities=16%  Similarity=0.233  Sum_probs=167.4

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+|+|.+|++|+..+|.+.....|.||...+.+                        .++...+++.|.          
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd----------   55 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD----------   55 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence            4589999999999999999999999999987764                        356678899998          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEc-cccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                        ..|+.|.|  +|..+.|++++.|..-++|.. .+++.+...                                     
T Consensus        56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptl-------------------------------------   94 (361)
T KOG1523|consen   56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-------------------------------------   94 (361)
T ss_pred             --cceeEEee--cCCCCceeEccCCCCccccccCCCCeeccce-------------------------------------
Confidence              89999999  567889999999999999998 555544321                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                             . +..+....+++.|+|.++.||+| ....|.+|-++. +...-+-   .+.-..+.+.|.+++|+|++ -+|
T Consensus        95 -------v-LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWWVs---KhikkPirStv~sldWhpnn-VLl  161 (361)
T KOG1523|consen   95 -------V-LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWWVS---KHIKKPIRSTVTSLDWHPNN-VLL  161 (361)
T ss_pred             -------e-EEEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccceehh---hhhCCccccceeeeeccCCc-cee
Confidence                   1 35778889999999999999999 888999998883 3322110   01124567889999999998 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeeccc--ccccCcccc-------ccccccceeEEEEcCCCCEEEE-EeCCeEEEE
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDA--AESHGSKSF-------FTEIIASISDIKFANDGQHLLS-RDYMNLKLW  339 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h--~~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~s-~~d~~i~iw  339 (487)
                      ++|+.|+..|++..--+.        .+..  +.+-..+..       +..-.+.+..+.|+|+|..|+- +.|..+.+-
T Consensus       162 aaGs~D~k~rVfSayIK~--------Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKG--------VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             cccccCcceeEEEEeeec--------cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            999999999999754322        1110  000111111       1123478999999999999985 567999999


Q ss_pred             eCCCCCceeeeee
Q 011368          340 DIRMDSTPVATFK  352 (487)
Q Consensus       340 d~~~~~~~~~~~~  352 (487)
                      |...+.+.+....
T Consensus       234 da~~p~~~v~~~~  246 (361)
T KOG1523|consen  234 DAAGPSERVQSVA  246 (361)
T ss_pred             ecCCCchhccchh
Confidence            9865333333333

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=1.9e-14  Score=138.91  Aligned_cols=315  Identities=24%  Similarity=0.355  Sum_probs=219.3

Q ss_pred             cEEEEEE-cCCCC-EEEEEe-cCCcEEEEEeeC-CcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           34 IVSAIEF-DKTGD-YLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        34 ~V~~~~~-s~~~~-~l~~g~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .+..+.+ ++++. +++..+ .|+.+.+|+... ..                           ....+..|.        
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~--------  155 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---------------------------LIRTLEGHS--------  155 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe---------------------------EEEEEecCc--------
Confidence            5777777 88887 555544 499999999875 22                           357788888        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                          ..|..+.|  ++++..+++++. |+.+++|++..+.....                                    
T Consensus       156 ----~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  193 (466)
T COG2319         156 ----ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPLST------------------------------------  193 (466)
T ss_pred             ----ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceEEe------------------------------------
Confidence                88999999  567778888875 99999999987544333                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                 +.+|...|.+++|+|++. .++++ .|+.|++||.. .+.....      .+..|.... -..|+|++ 
T Consensus       194 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~~~~~-~~~~~~~~-  253 (466)
T COG2319         194 -----------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGHSDSV-VSSFSPDG-  253 (466)
T ss_pred             -----------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCCCcce-eEeECCCC-
Confidence                       256899999999999998 66665 99999999887 3333321      245666664 33899998 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ..+++++.|+.+++|+++.....   ...+..             |...+.++.|+|++..+++++ |+.+.+||... .
T Consensus       254 ~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~  316 (466)
T COG2319         254 SLLASGSSDGTIRLWDLRSSSSL---LRTLSG-------------HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET-G  316 (466)
T ss_pred             CEEEEecCCCcEEEeeecCCCcE---EEEEec-------------CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC-C
Confidence            89999999999999999876531   122222             467899999999888888864 57899999876 4


Q ss_pred             ceeeeee--cccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          346 TPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       346 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      .......  .|...+               ..+.|.+++..++.+ ..|+.+.+|++.... .......... +..+.+.
T Consensus       317 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~  379 (466)
T COG2319         317 KLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN-VLSVSFS  379 (466)
T ss_pred             ceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce-EEEEEEC
Confidence            4444443  444322               477774343556655 688999999998875 2222222222 5566666


Q ss_pred             eCCccccccccceeeecccce-ecCCCCCcccccc-ccC-CCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          423 AAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY-NLS-SKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~-~~~-~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                      + . ...     ...+..++. .+|.......... ... ..+....+++++..++.++ .+.+.+|.
T Consensus       380 ~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         380 P-D-GRV-----VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             C-C-CCE-----EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            5 4 333     223666666 8884443332222 222 7899999999999999865 44577775

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.75  E-value=2e-16  Score=131.31  Aligned_cols=210  Identities=9%  Similarity=0.169  Sum_probs=158.6

Q ss_pred             cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .-++..++++..|+. +-++|.+++-|-+..|||++++.                        .....+.+-+|.     
T Consensus       146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------------~~~vkTQLIAHD-----  196 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------------SGTVKTQLIAHD-----  196 (364)
T ss_pred             ccccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------------ccceeeEEEecC-----
Confidence            445678999999997 55889999999999999999873                        233457788898     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|..|+|.. ..-+.|++.+.||.+|++|++.-+...+....                              
T Consensus       197 -------KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~------------------------------  238 (364)
T KOG0290|consen  197 -------KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYED------------------------------  238 (364)
T ss_pred             -------cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecC------------------------------
Confidence                   8899999963 33568999999999999999876544332111                              


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCC-CCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNS-DCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                    .....+...++|++ |-+++|+ + +...|.|.|++.+...+       .++.+|.+.|..++|.|
T Consensus       239 --------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-------a~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  239 --------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-------ARLRNHQASVNGIAWAP  297 (364)
T ss_pred             --------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-------ehhhcCcccccceEecC
Confidence                          11155677889987 4567777 4 77889999999766554       36789999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCcc--ccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEeCCeEEEE
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLW  339 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~d~~i~iw  339 (487)
                      ..+..|++++.|....+||+.+.-.  ....+..+..              .+.|+.+.|++ .+.+++.+..+.+.+-
T Consensus       298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             CCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeecccCCCEEEEEecCeeeEE
Confidence            9889999999999999999987432  1111222222              57899999995 5678888876655543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.3e-17  Score=146.48  Aligned_cols=243  Identities=21%  Similarity=0.253  Sum_probs=164.2

Q ss_pred             CCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (487)
Q Consensus        24 ~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (487)
                      ...++.+|++-|+|++|+.+|.+|++|+.|-.+.|||.-..+..                          ...-.||.  
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--------------------------hsI~TgHt--   93 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--------------------------HSISTGHT--   93 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--------------------------eeeecccc--
Confidence            34567889999999999999999999999999999997644331                          34455788  


Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                                ..|.++.|.|..++..+++|+.|..|+++|+...+.....   ...                        
T Consensus        94 ----------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d---~~~------------------------  136 (758)
T KOG1310|consen   94 ----------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD---HGM------------------------  136 (758)
T ss_pred             ----------cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc---cCc------------------------
Confidence                      8999999999888899999999999999999853311110   000                        


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSA  259 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v  259 (487)
                               ....+. ...|...|..++..|++ ..+-++ .||+|+-+|++....+-.-.+..  ...+...--...|+
T Consensus       137 ---------~~~~~~-~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l  206 (758)
T KOG1310|consen  137 ---------EETTRC-WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL  206 (758)
T ss_pred             ---------cchhhh-hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence                     111222 27899999999999988 777778 99999999999644332111000  00111122346899


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccccc----Ccccccccc-----------ccceeEEEEcCC
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEI-----------IASISDIKFAND  324 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~~-----------~~~v~~v~~s~~  324 (487)
                      ..+|..+.+|++|+.|-..++||.+..............  .+|    ...-..++|           ..-++-++|+|+
T Consensus       207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN  284 (758)
T KOG1310|consen  207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN  284 (758)
T ss_pred             eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence            999999899999999999999996542211000000000  000    000111122           122566789999


Q ss_pred             CCEEEEE-eCCeEEEEeCCC
Q 011368          325 GQHLLSR-DYMNLKLWDIRM  343 (487)
Q Consensus       325 ~~~l~s~-~d~~i~iwd~~~  343 (487)
                      |.-|+.. +...|+++|+..
T Consensus       285 GtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  285 GTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             CcEEEEeeCCeEEEEEeecC
Confidence            9877765 347899999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.7e-17  Score=144.20  Aligned_cols=308  Identities=16%  Similarity=0.184  Sum_probs=219.0

Q ss_pred             CCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ..++-.|.+.|+.+.|+..|..|++|+.|..|.+||...+...                          +.-..||.   
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~---  185 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC---  185 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc---
Confidence            3456679999999999999999999999999999999877653                          22234677   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                               ..|..-.|.|..+..-+++++.||.+++=.+.... .....                              
T Consensus       186 ---------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~------------------------------  226 (559)
T KOG1334|consen  186 ---------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK------------------------------  226 (559)
T ss_pred             ---------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecce------------------------------
Confidence                     67777789888888899999999999987765432 22111                              


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC---cEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---VITS  258 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~  258 (487)
                                     .+..|.++|+-++.-|+. ..|.++ .|+.+.-.|++.........     ..+.+..   ....
T Consensus       227 ---------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----cr~~~~~~~v~L~~  286 (559)
T KOG1334|consen  227 ---------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----CREADEKERVGLYT  286 (559)
T ss_pred             ---------------ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-----eeccCCccceeeee
Confidence                           136899999999998864 456666 99999999998543322221     1122333   5678


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCccc--cccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEeCCe
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDYMN  335 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~d~~  335 (487)
                      ++.+|.....+++++.|-.+++||.+.-..-  ...+..|..|..       .......|++++|+.++ .+|++-.|-.
T Consensus       287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-------~~d~~v~ITgl~Ysh~~sElLaSYnDe~  359 (559)
T KOG1334|consen  287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-------VEDDPVNITGLVYSHDGSELLASYNDED  359 (559)
T ss_pred             EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-------cccCcccceeEEecCCccceeeeecccc
Confidence            8999988679999999999999998863311  001122222111       11123579999999665 4555557788


Q ss_pred             EEEEeCCCC-C----------ceee-eeecccccccccccccCCCCcceeeEEE-EcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          336 LKLWDIRMD-S----------TPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       336 i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      |+++.-... +          ..+. .+++|.+..+          +   -.+. |.|...|+++|++-|.|.||+-.++
T Consensus       360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T----------V---KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT----------V---KGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             eEEeccccccCCCCCCCcchhhccchhhcccccccc----------c---ceeeeccCccceEEecCccceEEEEecchh
Confidence            999954321 1          1222 3777776542          1   2554 4688999999999999999998877


Q ss_pred             CceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          403 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       403 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                       +.+..+++...-|+++...|-       ++.||+.+-|.. ++|..
T Consensus       427 -eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  427 -EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             -HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence             556777777778899988885       344899999988 99943

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.7e-15  Score=141.70  Aligned_cols=308  Identities=15%  Similarity=0.218  Sum_probs=207.8

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.-.++|.++||+++++|+|..||.|.+|.--..+.                       .-...+.++=|.      
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------  251 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------  251 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc------
Confidence            345777799999999999999999999999997433111                       111235677777      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|++++|  +++|.+|++|+..+.+.+|.+.+++.+ +                                   
T Consensus       252 ------~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kq-f-----------------------------------  287 (792)
T KOG1963|consen  252 ------DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQ-F-----------------------------------  287 (792)
T ss_pred             ------cccceeEE--ecCCceEeecccceEEEEEeecCCCcc-c-----------------------------------
Confidence                  78999999  689999999999999999999988732 2                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC---CCCCCCCcEEEEEEec
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHP  263 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p  263 (487)
                                  +..-.++|..+.++||+...+.. .|+.|.+...........+-.+++.   .-....+-.+.+.++|
T Consensus       288 ------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp  355 (792)
T KOG1963|consen  288 ------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP  355 (792)
T ss_pred             ------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence                        46778899999999999999998 9999999877533322222111111   0112345567889999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---------C-
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---------Y-  333 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---------d-  333 (487)
                      .- +.++..+..|.|.+||+.+.+.+.+. ++... ......    ..+.-.+++++.+..|.++++..         | 
T Consensus       356 r~-~~~vln~~~g~vQ~ydl~td~~i~~~-~v~~~-n~~~~~----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  356 RT-NSLVLNGHPGHVQFYDLYTDSTIYKL-QVCDE-NYSDGD----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             CC-CceeecCCCceEEEEeccccceeeeE-EEEee-cccCCc----ceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence            65 78889999999999999987655222 22111 011110    02345788888888999999863         1 


Q ss_pred             -CeEEEEeCCCCCce----eeee-ecccccccccccccCCCCcceeeEEEE-cCCCC-EEEEEcCCCcEEEEEeCCCCc-
Q 011368          334 -MNLKLWDIRMDSTP----VATF-KIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGL-HFATGSYSNLLRIFSHGVGSA-  404 (487)
Q Consensus       334 -~~i~iwd~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~-~l~sg~~dg~i~iwd~~~~~~-  404 (487)
                       -.+++|-... ...    ...+ ..|....               ...++ ++... ..++++.||.++||-+...+. 
T Consensus       429 e~~LKFW~~n~-~~kt~~L~T~I~~PH~~~~---------------vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~  492 (792)
T KOG1963|consen  429 EVSLKFWQYNP-NSKTFILNTKINNPHGNAF---------------VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI  492 (792)
T ss_pred             eEEEEEEEEcC-CcceeEEEEEEecCCCcee---------------EEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence             2578897653 222    1222 2333321               23333 33333 789999999999999954322 


Q ss_pred             --------eeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCC
Q 011368          405 --------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSG  450 (487)
Q Consensus       405 --------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~  450 (487)
                              +...-..|+.+++..+|+.  ||..     |+.+-.+...+|+...
T Consensus       493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~--dGsl-----la~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  493 YKKSSNWTCKAIGSYHKTPITALCFSQ--DGSL-----LAVSFDDTITIWDYDT  539 (792)
T ss_pred             CcCccceEEeeeeccccCcccchhhcC--CCcE-----EEEecCCEEEEecCCC
Confidence                    1222235788999999987  6654     4444444449995543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=4.4e-17  Score=147.00  Aligned_cols=318  Identities=15%  Similarity=0.113  Sum_probs=201.2

Q ss_pred             EEEcCCC--CEEEEEecCCcEEEE--EeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           38 IEFDKTG--DYLAVGDRGGRVILF--ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        38 ~~~s~~~--~~l~~g~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      +++.|.+  .+.++...+...++|  ++.....       -..+.+....+-.+...+....++..|.            
T Consensus       234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I-------~~~~dd~~~~k~a~~k~w~ik~tl~s~~------------  294 (577)
T KOG0642|consen  234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTI-------EDEFDDLSDLKKAFTKKWNIKFTLRSHD------------  294 (577)
T ss_pred             ccCCcccCCCccccCchHHHHhhcccchhcccc-------cccccchhhhhhhhheecceeeeeecch------------
Confidence            4555543  456666677778888  5443322       1111111000000111122223666676            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|..++|+|  ....|++++.|+++++|++.......                             ...         .
T Consensus       295 d~ir~l~~~~--sep~lit~sed~~lk~WnLqk~~~s~-----------------------------~~~---------~  334 (577)
T KOG0642|consen  295 DCIRALAFHP--SEPVLITASEDGTLKLWNLQKAKKSA-----------------------------EKD---------V  334 (577)
T ss_pred             hhhhhhhcCC--CCCeEEEeccccchhhhhhcccCCcc-----------------------------ccc---------e
Confidence            8899999964  45689999999999999994311000                             000         0


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                      .+..+ +.+|.++|.|++..+++..+++| .||+|+.|++..........+..  ...+.||.+.|+.+++++.. ..|+
T Consensus       335 epi~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Ll  412 (577)
T KOG0642|consen  335 EPILT-FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLL  412 (577)
T ss_pred             eeeEE-EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-ccee
Confidence            12223 38999999999999999999999 99999999776433322222110  23578999999999999987 8899


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE--EEeCCeEEEEeCCCCCcee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL--SRDYMNLKLWDIRMDSTPV  348 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~--s~~d~~i~iwd~~~~~~~~  348 (487)
                      +++.||++++|+......     .+|..-           .-.+.-..+.+-.....+.  +...+.-.++++.. ...+
T Consensus       413 scs~DgTvr~w~~~~~~~-----~~f~~~-----------~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~  475 (577)
T KOG0642|consen  413 SCSSDGTVRLWEPTEESP-----CTFGEP-----------KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDL  475 (577)
T ss_pred             eecCCceEEeeccCCcCc-----cccCCc-----------cccCCcceEeeccchhHhhhhhcccccccchhhhh-hhhe
Confidence            999999999999877553     222220           0012334555532221111  12224444444443 2223


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  428 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  428 (487)
                      ..+.....+.+.        ....+..+.++|.+.+.+++..|+.|+++|..++ .......+|...++++++.|  ++-
T Consensus       476 ~~~~s~~~~~~~--------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~--ng~  544 (577)
T KOG0642|consen  476 LIFESSASPGPR--------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDP--NGP  544 (577)
T ss_pred             eeccccCCCccc--------ccCccceEEecCCCCeeEecccCCceeccccccc-ccchheeeccceecceeecC--CCc
Confidence            333221111100        0011247889999999999999999999999988 55888899999999999998  666


Q ss_pred             cccccceeeecccce-ecCCCC
Q 011368          429 RSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       429 ~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      +     |++|+.|+. .+|+..
T Consensus       545 ~-----l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  545 Y-----LMSGSHDGSVRLWKLD  561 (577)
T ss_pred             e-----EEeecCCceeehhhcc
Confidence            6     999999999 999653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.73  E-value=3.2e-15  Score=126.31  Aligned_cols=317  Identities=13%  Similarity=0.144  Sum_probs=193.5

Q ss_pred             CcEEEEEEcCCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      +.|.-+.|..|..++.++ ..|+.|.+|++...+-                           ...+....          
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---------------------------~ckIdeg~----------   91 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---------------------------YCKIDEGQ----------   91 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------------------EEEeccCC----------
Confidence            456778888888766655 5788999999864432                           23344333          


Q ss_pred             cccceeEEEEEecCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc-eeeee-
Q 011368          112 IEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHL-  188 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  188 (487)
                        .++.+++|  +|+|+.+ .+...|-.|.+|.+.+.+...+.-.....  ...+| .+++.+.+.....+.. +..+. 
T Consensus        92 --agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~--kg~~f-~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   92 --AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV--KGYAF-HPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             --CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccccCc--eeEEE-CCCCceeeeeecccHHHHHHHHh
Confidence              78999999  6788554 55668999999999887655543222222  22222 3555555555443322 11111 


Q ss_pred             --eeeccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          189 --EWTENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       189 --~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                        .|...   +.+ .-.+-..+.+.|+|||+.|++=   -+-.|..|...                    -.+..++|+|
T Consensus       165 c~~W~ll---~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------------lG~k~v~wsP  220 (447)
T KOG4497|consen  165 CKAWILL---KEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------------LGLKFVEWSP  220 (447)
T ss_pred             hHHHHHH---Hhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------------cceeEEEecc
Confidence              12211   111 3345567889999999988852   23333333222                    3477899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccc--------------------------------eeecccccccC-------
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSA--------------------------------RILRDAAESHG-------  304 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------~~~~~h~~~~~-------  304 (487)
                      .+ ++|++|+.|+.+|+.+--+-+......                                ..++.|.....       
T Consensus       221 ~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~  299 (447)
T KOG4497|consen  221 CN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ  299 (447)
T ss_pred             cc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence            98 999999999988876544321100000                                00000000000       


Q ss_pred             ----------ccccccccccceeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCceeeeeecccccccccccccCCCCcc
Q 011368          305 ----------SKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  371 (487)
Q Consensus       305 ----------~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (487)
                                +..-+.+....+..++|++|..|+++..|   +.+.+||++. .+....+.. ..++             
T Consensus       300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLiQ-k~pi-------------  364 (447)
T KOG4497|consen  300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLIQ-KHPI-------------  364 (447)
T ss_pred             hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhhh-ccce-------------
Confidence                      00111223456778999999999999865   8899999985 444333332 2222             


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCc
Q 011368          372 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGH  451 (487)
Q Consensus       372 ~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~  451 (487)
                        ....|+|....|+.+.....+++|-....               .+.-.|. .| +                      
T Consensus       365 --raf~WdP~~prL~vctg~srLY~W~psg~---------------~~V~vP~-~G-F----------------------  403 (447)
T KOG4497|consen  365 --RAFEWDPGRPRLVVCTGKSRLYFWAPSGP---------------RVVGVPK-KG-F----------------------  403 (447)
T ss_pred             --eEEEeCCCCceEEEEcCCceEEEEcCCCc---------------eEEecCC-CC-c----------------------
Confidence              58999999888888877778999987532               1122221 22 2                      


Q ss_pred             cccccccCCCeEEEEEcCCCCEEEEecCCeEE
Q 011368          452 HELSYNLSSKLLHLAWHPTTNLIACANGNSLF  483 (487)
Q Consensus       452 ~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~  483 (487)
                               .|.+++|+.+|..|+..+.|...
T Consensus       404 ---------~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  404 ---------NIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             ---------eeeeEEecCCCcEEEEEcCCceE
Confidence                     67889999999998888877543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.1e-15  Score=147.47  Aligned_cols=269  Identities=14%  Similarity=0.176  Sum_probs=179.1

Q ss_pred             cCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        32 ~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      ...|+.+.+-.  |..++.+|+.||.|+||+-....-                      ...+.++.+.+-+.   .+ .
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----------------------~~~eLVTaw~~Ls~---~~-~ 1162 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----------------------KKPELVTAWSSLSD---QL-P 1162 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEeccccccc----------------------CCceeEEeeccccc---cC-c
Confidence            34688887754  457899999999999997432210                      02233333332210   00 0


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      ...... .-+.|  .....+|++++.-..|+|||.+........                                    
T Consensus      1163 ~~r~~~-~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di------------------------------------ 1203 (1387)
T KOG1517|consen 1163 GARGTG-LVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVVADI------------------------------------ 1203 (1387)
T ss_pred             cCCCCC-eeeeh--hhhCCeEEecCCeeEEEEEecccceeEeec------------------------------------
Confidence            000112 44667  345556777777899999999877654331                                    


Q ss_pred             eeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc--EEEEEEecCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--ITSAEFHPIY  265 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~  265 (487)
                                ..+....|+++.-+- .|+.|++| .||.|++||.+.....-.+     .....|+..  |..+.+.+.|
T Consensus      1204 ----------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-----~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1204 ----------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-----CVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             ----------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----eeecccCCcccceeEEeecCC
Confidence                      134455667766543 57999999 9999999999855432111     134567776  9999999988


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS  345 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~  345 (487)
                      -..|++|+.+|.|++||++... ...... ...|          ....+.++++..+++...+|+|+.+.|+||++.  +
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~-~e~~~~-iv~~----------~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~--G 1334 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSS-KETFLT-IVAH----------WEYGSALTALTVHEHAPIIASGSAQLIKIYSLS--G 1334 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCc-ccccce-eeec----------cccCccceeeeeccCCCeeeecCcceEEEEecC--h
Confidence            4569999999999999999842 111111 1111          000125899999999999999987999999995  6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +.+..++.+....        ...+..+.+++|+|-.-++|+|+.|.+|.||.....
T Consensus      1335 ~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            6666666443321        223334469999999999999999999999988754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=3.6e-16  Score=127.98  Aligned_cols=264  Identities=9%  Similarity=0.087  Sum_probs=166.8

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      ...+++|.            +.|+++.|   ....+|++|..-|.|++|++.+.+......                   
T Consensus         7 ~fvLRp~~------------~~v~s~~f---qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r-------------------   52 (323)
T KOG0322|consen    7 FFVLRPHS------------SSVTSVLF---QANERLMSGLSVGIVKMWVLQTERDLPLIR-------------------   52 (323)
T ss_pred             eeEecccc------------chheehhh---ccchhhhcccccceEEEEEeecCccchhhh-------------------
Confidence            44566888            88999999   334569999999999999999876443311                   


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEE--e---------
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI--V---------  242 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~--~---------  242 (487)
                                                 ..+...|+.+.--|++.+..-|.|..+.+|++.... .+.+  +         
T Consensus        53 ---------------------------~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~-~i~i~Si~~nslgFCr  104 (323)
T KOG0322|consen   53 ---------------------------LFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA-FISIHSIVVNSLGFCR  104 (323)
T ss_pred             ---------------------------hhccceeeceeecCCcchhhcCCCceEEEEEccCcc-eEEEeeeecccccccc
Confidence                                       134555666666665433333466666666665311 0000  0         


Q ss_pred             -----------------------------------ecCCCCCCCCCCcEEEEEEec-CCC-CEEEEEeCCCeEEEEEccC
Q 011368          243 -----------------------------------DMKPSNMDDLTEVITSAEFHP-IYC-NLLAYSSSRGFVRLVDMRQ  285 (487)
Q Consensus       243 -----------------------------------~~~~~~~~~~~~~v~~v~~~p-~~~-~~l~~~~~dg~i~iwd~~~  285 (487)
                                                         .+....-.+..+.++|..+.- .+. -++++|.++|.+.+||+.+
T Consensus       105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~  184 (323)
T KOG0322|consen  105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST  184 (323)
T ss_pred             ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence                                               000001112234566666432 221 3566677899999999999


Q ss_pred             CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCc--eeeeeecccccccccc
Q 011368          286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST--PVATFKIHEHLRPKLC  362 (487)
Q Consensus       286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  362 (487)
                      +....+....++       .......|..+|.++.|.+.-..=++| .+..+..|.+.....  ++.....-+++     
T Consensus       185 ~~~~~~~~~~~k-------v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp-----  252 (323)
T KOG0322|consen  185 GDKIIQLPQSSK-------VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP-----  252 (323)
T ss_pred             Cceeeccccccc-------cccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC-----
Confidence            753321111111       122234578899999997543322333 346788888764211  11111111111     


Q ss_pred             cccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc
Q 011368          363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  442 (487)
Q Consensus       363 ~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~  442 (487)
                               ++..+.+-||++.+|+++.|+.||||+.++. ..+..++.|...+++++|+|  +..+     +++++.|.
T Consensus       253 ---------Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfsp--d~~l-----mAaaskD~  315 (323)
T KOG0322|consen  253 ---------GVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSP--DCEL-----MAAASKDA  315 (323)
T ss_pred             ---------CccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCC--CCch-----hhhccCCc
Confidence                     1247899999999999999999999999998 45889999999999999999  4444     89999999


Q ss_pred             e-ecCCC
Q 011368          443 A-HENSS  448 (487)
Q Consensus       443 ~-~~w~~  448 (487)
                      . .+|+.
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9 99954

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.72  E-value=9.6e-16  Score=129.03  Aligned_cols=243  Identities=12%  Similarity=0.089  Sum_probs=170.8

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ++|+|.+|  ++++..++.+.....|.||.....+ ....                                        
T Consensus        11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~w~~~----------------------------------------   48 (361)
T KOG1523|consen   11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADLWEPA----------------------------------------   48 (361)
T ss_pred             Cceeeeee--cCCCceEEeccCCceEEEEEecCCCCceec----------------------------------------
Confidence            88999999  6899999999999999999988776 2221                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                          .+ +..|...|++++|+|..+.|++| .|..-++|....++.-...     ..+..++..++++.|+|.+ +.||+
T Consensus        49 ----ht-ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt-----lvLlRiNrAAt~V~WsP~e-nkFAV  117 (361)
T KOG1523|consen   49 ----HT-LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT-----LVLLRINRAATCVKWSPKE-NKFAV  117 (361)
T ss_pred             ----ee-hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc-----eeEEEeccceeeEeecCcC-ceEEe
Confidence                11 47899999999999999999999 9999999998534432221     1345688899999999999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC---CCce
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM---DSTP  347 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~---~~~~  347 (487)
                      |+....|.+|-++...-.     -...|..        ..+...|.++.|+|++-+|++|+ |+..|++..--   +.++
T Consensus       118 gSgar~isVcy~E~ENdW-----WVsKhik--------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp  184 (361)
T KOG1523|consen  118 GSGARLISVCYYEQENDW-----WVSKHIK--------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP  184 (361)
T ss_pred             ccCccEEEEEEEecccce-----ehhhhhC--------CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC
Confidence            999999999988875421     0011100        12357899999999999999985 79999887521   0111


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                      ...--+.+.+-..++..+. ..--++..+.|+|+|..|+-.+.|..+.+-|.....+..+.+....-|..++.+..
T Consensus       185 ap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is  259 (361)
T KOG1523|consen  185 APTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS  259 (361)
T ss_pred             CCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence            1000011111011111110 11113469999999999999999999999998877555555555556666665553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=4.9e-16  Score=131.19  Aligned_cols=219  Identities=20%  Similarity=0.292  Sum_probs=143.9

Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      -++|||+|+++|+++.- .+.|=|.++-+.                                 |. -|.+      -+.|
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~---------------------------------~q-lf~c------ldki   51 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL---------------------------------HQ-LFLC------LDKI   51 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhH---------------------------------HH-HHHH------HHHh
Confidence            46799999999999765 677777665543                                 11 0111      1568


Q ss_pred             eEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          117 NRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      .-+.|  ..+..+++.+ ..|+.|.+|++...+....                                           
T Consensus        52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ck-------------------------------------------   86 (447)
T KOG4497|consen   52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCK-------------------------------------------   86 (447)
T ss_pred             hheee--eccceeeeeeeeccceEEEEEeecceeEEE-------------------------------------------
Confidence            88999  4666666654 6788999999987665443                                           


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                          +.....++..++|||||+.|.. + .+-.|.+|.+.+.. ...+        +-....+..++|+|+| ++.+.++
T Consensus        87 ----Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~~--------~~pK~~~kg~~f~~dg-~f~ai~s  152 (447)
T KOG4497|consen   87 ----IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GYLL--------PHPKTNVKGYAFHPDG-QFCAILS  152 (447)
T ss_pred             ----eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-eEEe--------cccccCceeEEECCCC-ceeeeee
Confidence                2566788999999999977665 5 89999999999543 3322        2223346889999999 8888776


Q ss_pred             CCCe---EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCce
Q 011368          274 SRGF---VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTP  347 (487)
Q Consensus       274 ~dg~---i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~iwd~~~~~~~  347 (487)
                      .-..   +.|.....-.+.    +.|..             .+-..+.+.|+|||..|+.-+.   -.|..|.-.     
T Consensus       153 RrDCkdyv~i~~c~~W~ll----~~f~~-------------dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-----  210 (447)
T KOG4497|consen  153 RRDCKDYVQISSCKAWILL----KEFKL-------------DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-----  210 (447)
T ss_pred             cccHHHHHHHHhhHHHHHH----HhcCC-------------CcccccCceECCCCcEEEEecchhhheeeeeeec-----
Confidence            5311   111111111111    22222             1346788999999988775432   222222211     


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                             -+                +..+.|+|.+++|+.|+.|+.+||-+--
T Consensus       211 -------lG----------------~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  211 -------LG----------------LKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             -------cc----------------eeEEEeccccceEEeeccchhhhhhcee
Confidence                   11                1379999999999999999999886543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.2e-15  Score=131.65  Aligned_cols=176  Identities=16%  Similarity=0.119  Sum_probs=133.2

Q ss_pred             eEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC
Q 011368          208 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  286 (487)
Q Consensus       208 ~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~  286 (487)
                      .+++|+++|..++++ .||.+++|+........        ....|...|.++.|+|+| ++|++.+.| ..+||+.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence            789999999999999 99999999976443322        346788999999999999 999999999 8999999998


Q ss_pred             ccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEEE--eC-CeEEEEeCCCCCc-----eeeeeeccc
Q 011368          287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR--DY-MNLKLWDIRMDST-----PVATFKIHE  355 (487)
Q Consensus       287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s~--~d-~~i~iwd~~~~~~-----~~~~~~~~~  355 (487)
                      ..+.... -+..              ...+..+.|+.|+   .+.+.+  .. +.|+.||+.....     ....+..++
T Consensus       218 ~~~a~~t-~~~k--------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  218 AALARKT-PFSK--------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             chhhhcC-Cccc--------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence            5432111 1222              3456778888776   333332  33 7788877754222     111112222


Q ss_pred             ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      .                +.+++.|+||++++.|+.||.|-|++..+.+.....-++|...|+.+.|+|.
T Consensus       283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            1                2599999999999999999999999999988888888999999999999994

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.2e-14  Score=124.57  Aligned_cols=265  Identities=14%  Similarity=0.135  Sum_probs=165.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .+..++|++--..+|++..|-.|+||+-....                            ...++...           +
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~s-----------Q  140 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVS-----------Q  140 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------Cceecchh-----------h
Confidence            47789999976778889999999999965522                            13333322           2


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..|++++|-|. .+..|+.|+..| |.+|.......... .....                                   
T Consensus       141 rnvtclawRPl-saselavgCr~g-IciW~~s~tln~~r~~~~~s-----------------------------------  183 (445)
T KOG2139|consen  141 RNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTLNANRNIRMMS-----------------------------------  183 (445)
T ss_pred             cceeEEEeccC-Ccceeeeeecce-eEEEEcCccccccccccccc-----------------------------------
Confidence            67999999763 345677777655 89998754221111 00000                                   


Q ss_pred             cceeeee-cccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          193 NMATKVY-PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       193 ~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                      ..+...+ -.+| ..|++++|++||..++++  .|..|.|||.+++. ...+.       ....+.+.-+.|+|++ .+|
T Consensus       184 ~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~-------~~glgg~slLkwSPdg-d~l  253 (445)
T KOG2139|consen  184 THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLI-------PKGLGGFSLLKWSPDG-DVL  253 (445)
T ss_pred             ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-ccccc-------ccCCCceeeEEEcCCC-CEE
Confidence            0011111 1344 789999999999999997  89999999999544 33221       1233567889999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~  349 (487)
                      .+++-|+..++|...+.-...   +-.-+              .+.|...+|+|+|++|+-...+.-++|.+...++...
T Consensus       254 faAt~davfrlw~e~q~wt~e---rw~lg--------------sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~  316 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQSWTKE---RWILG--------------SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV  316 (445)
T ss_pred             EEecccceeeeehhcccceec---ceecc--------------CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc
Confidence            999999999999655432110   11122              3589999999999998877667777777755333221


Q ss_pred             eeeccc-ccccccccc-------cCCCCcceeeEEEEcCCCCEEEEEcCCC--------cEEEEEeCC
Q 011368          350 TFKIHE-HLRPKLCDL-------YNNDSIFDKFECSVSGDGLHFATGSYSN--------LLRIFSHGV  401 (487)
Q Consensus       350 ~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~s~d~~~l~sg~~dg--------~i~iwd~~~  401 (487)
                      ...... ..+..+.++       ...-+--.+.+++|.|.|.+||+.-..+        .|.+||...
T Consensus       317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            111000 000000010       0000111235899999999999765443        355666553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.4e-15  Score=145.24  Aligned_cols=218  Identities=12%  Similarity=0.093  Sum_probs=146.4

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...|...+.+.+|||||++|+.++.+   ..|++||+.+++.                         +.+..+.+|.   
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------~~l~~~~g~~---  250 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------KVVASFRGHN---  250 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------------------EEEecCCCcc---
Confidence            34567789999999999999987643   3699999987642                         1233344443   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEE--EccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                                  ..++|  +|||+.|+.++ .++.+.||  |+.++....+                             
T Consensus       251 ------------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l-----------------------------  287 (429)
T PRK01742        251 ------------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL-----------------------------  287 (429)
T ss_pred             ------------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEee-----------------------------
Confidence                        46789  68999888764 68876666  4445543322                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                                         ..+...+....|+|||+.|+.+  .++...||+++..+.....+        .+..  .+.
T Consensus       288 -------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~~~  338 (429)
T PRK01742        288 -------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--YSA  338 (429)
T ss_pred             -------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--CCc
Confidence                               4556667889999999987764  67888888876443333321        2222  457


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEE
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  338 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~i  338 (487)
                      .|+|+| +.|++.+.++ +.+||+.+++..     .+..+              .....+.|+|||++|+.++ ++.+.+
T Consensus       339 ~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~--------------~~~~~~~~sPdG~~i~~~s~~g~~~~  397 (429)
T PRK01742        339 QISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST--------------FLDESPSISPNGIMIIYSSTQGLGKV  397 (429)
T ss_pred             cCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC--------------CCCCCceECCCCCEEEEEEcCCCceE
Confidence            899999 8888887765 556999887532     12110              1224578999999999875 466666


Q ss_pred             EeCC-CCCceeeeeecccccccccccccCCCCcceeeEEEEcCC
Q 011368          339 WDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  381 (487)
Q Consensus       339 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  381 (487)
                      |++. ..+.....+..+...+               ..++|||-
T Consensus       398 l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~  426 (429)
T PRK01742        398 LQLVSADGRFKARLPGSDGQV---------------KFPAWSPY  426 (429)
T ss_pred             EEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence            6642 2367777787666533               36888873

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=9.7e-16  Score=130.09  Aligned_cols=264  Identities=9%  Similarity=0.072  Sum_probs=168.3

Q ss_pred             ccCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           31 DVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        31 h~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      +...++.+.|..  ....+.+|+.||+|++||++.....                         ....+.+|.+      
T Consensus        69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------------------------a~~~~~~~~~------  117 (376)
T KOG1188|consen   69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------------------------ARISWTQQSG------  117 (376)
T ss_pred             CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------------------hheeccCCCC------
Confidence            456677788876  3467889999999999999876542                         1223334431      


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEe----CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                           .+..+++-  +..+..+++|.    .|-.|.+||++..+.                                   
T Consensus       118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----------------------------------  155 (376)
T KOG1188|consen  118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ-----------------------------------  155 (376)
T ss_pred             -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc-----------------------------------
Confidence                 45566665  34666777764    677899999987653                                   


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                .++.+...|.+.|++++|+| +.++|++| .||-|.++|++.....-.+     ...-.|...|.++.|.
T Consensus       156 ----------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----~~viN~~sSI~~igw~  220 (376)
T KOG1188|consen  156 ----------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----LHVINHGSSIHLIGWL  220 (376)
T ss_pred             ----------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----HHhhcccceeeeeeee
Confidence                      12334578999999999999 57788999 9999999999854321111     1233577789999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeC-CeEEEEe
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWD  340 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d-~~i~iwd  340 (487)
                      ..+.+.|.+-+..+...+|+++.+...    ..++. +.-......-......+-......+....+. |.+ +...++-
T Consensus       221 ~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~-~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~  295 (376)
T KOG1188|consen  221 SKKYKRIMCLTHMETFAIYELEDGSEE----TWLEN-PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP  295 (376)
T ss_pred             cCCcceEEEEEccCceeEEEccCCChh----hcccC-ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence            888778999999999999999987632    11111 0000000000000112222222223444443 444 6666655


Q ss_pred             CCC--C---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          341 IRM--D---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       341 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +..  .   ...+..+.++...+              |+++.|...+.++.+|+.||.+.+|....
T Consensus       296 ~~~~~s~~~~~~~a~l~g~~~ei--------------VR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  296 LVDTSSGSLLTEPAILQGGHEEI--------------VRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             eeecccccccCccccccCCcHHH--------------HHHHhhhcccceeeccCCCceEEEEecCC
Confidence            431  1   23445555533221              15778888889999999999999999743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=5.3e-14  Score=134.04  Aligned_cols=212  Identities=15%  Similarity=0.169  Sum_probs=139.5

Q ss_pred             cceeEEEEEecCCCcEEEEEe---CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|||+.|+..+   .+..|.+|++.+++...+                                      
T Consensus       199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------------------------  238 (429)
T PRK03629        199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------------------------  238 (429)
T ss_pred             CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------------------------
Confidence            67899999  68899888754   345789999988764433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ......+...+|+|||+.|+..  .++  .|++||+++ +....+        ..+...+....|+|+| 
T Consensus       239 ----------~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~~~l--------t~~~~~~~~~~wSPDG-  298 (429)
T PRK03629        239 ----------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQIRQV--------TDGRSNNTEPTWFPDS-  298 (429)
T ss_pred             ----------cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCEEEc--------cCCCCCcCceEECCCC-
Confidence                      1222334568999999988864  344  588999984 333322        2233456789999999 


Q ss_pred             CEEEEEeCC-CeEEEE--EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEE
Q 011368          267 NLLAYSSSR-GFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLW  339 (487)
Q Consensus       267 ~~l~~~~~d-g~i~iw--d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iw  339 (487)
                      +.|+..+.+ +...||  |+.++..     +.+..             .........|+|||++|+... +   ..|.+|
T Consensus       299 ~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        299 QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence            878777654 444555  5555432     22221             023456788999999988643 2   568899


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCc---EEEEEeCCCCceeEEEeccCCcc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      |+.+ +. ...+......                ....|+|||++|+.++.++.   +.++++. + .....+.+|...+
T Consensus       361 dl~~-g~-~~~Lt~~~~~----------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G-~~~~~l~~~~~~~  420 (429)
T PRK03629        361 DLAT-GG-VQVLTDTFLD----------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G-RFKARLPATDGQV  420 (429)
T ss_pred             ECCC-CC-eEEeCCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECC-C-CCeEECccCCCCc
Confidence            9875 43 2333321110                26789999999999887764   6677764 3 3356677788888


Q ss_pred             ccceEee
Q 011368          417 RKPILQA  423 (487)
Q Consensus       417 ~~~~~~~  423 (487)
                      ...+|+|
T Consensus       421 ~~p~Wsp  427 (429)
T PRK03629        421 KFPAWSP  427 (429)
T ss_pred             CCcccCC
Confidence            8888876

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.3e-14  Score=114.11  Aligned_cols=277  Identities=12%  Similarity=0.119  Sum_probs=168.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.+-+|  +|.+++|++|..+|.|.+..+.+-........                                     .
T Consensus        11 ~tvf~qa~--sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~-------------------------------------g   51 (325)
T KOG0649|consen   11 NTVFAQAI--SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP-------------------------------------G   51 (325)
T ss_pred             HHHHHHhh--CCcceEEEEecCCCeEEEEEehhhhccccCCC-------------------------------------C
Confidence            34566677  57789999999999999998875321111000                                     0


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCcee---EEeecC--CCCCCCCCCcEEEEEEecCCCCE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF---NIVDMK--PSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~---~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                      +.......+|+++|+.++|.  ..+|++|.||.|+-|..+...+..   .++..+  .++-.-.-..|+++...|.. +-
T Consensus        52 k~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nS  128 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NS  128 (325)
T ss_pred             CcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-Cc
Confidence            11111137999999999998  568888878999999876433211   111111  01100112358899999987 77


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE-cCCCCEEEEEeCCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF-ANDGQHLLSRDYMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~s~~d~~i~iwd~~~~~~~  347 (487)
                      ++.++.|+.+.-||+++|+..    +.+.+             |+..|.+++- +.+++.|..+.||++|+||.++ .+.
T Consensus       129 i~~AgGD~~~y~~dlE~G~i~----r~~rG-------------HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~  190 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDGRIQ----REYRG-------------HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKH  190 (325)
T ss_pred             EEEecCCeEEEEEEecCCEEE----EEEcC-------------CcceeeeeeecccCcceeecCCCccEEEEeccc-cce
Confidence            777779999999999999865    67777             4889999988 4555444444679999999998 787


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce-eEEEeccCCccccceEeeCCc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      +..+.....+...     ..+.-.  +-.+..-+..+|++|+. -.+.+|+++..+.. ...+.+|   +..+.|..   
T Consensus       191 v~~ie~yk~~~~l-----Rp~~g~--wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpipa~---v~~v~F~~---  256 (325)
T KOG0649|consen  191 VSMIEPYKNPNLL-----RPDWGK--WIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIPAR---VHLVDFVD---  256 (325)
T ss_pred             eEEeccccChhhc-----CcccCc--eeEEEeccCceEEecCC-CceeEEeccCCCceEEEecccc---eeEeeeec---
Confidence            7777654432110     000111  22444556678887765 47999999976432 3344444   33444542   


Q ss_pred             cccccccceeeecccceecCCCCCccccccccCC-CeEEEEEcC
Q 011368          427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS-KLLHLAWHP  469 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~-~v~~~~~sp  469 (487)
                      ..+     ++.|..+...-|..+..+........ ......|+.
T Consensus       257 d~v-----l~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~  295 (325)
T KOG0649|consen  257 DCV-----LIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQT  295 (325)
T ss_pred             ceE-----EEeccccceeeeeeccEEEEeccCCccceeeecccC
Confidence            222     34443444455644444443333322 234444543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=3.9e-16  Score=137.60  Aligned_cols=263  Identities=12%  Similarity=0.123  Sum_probs=199.4

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .-..+.+  +.+|.+++.++..|.|-.+|..++++...                                          
T Consensus       131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~E------------------------------------------  166 (545)
T KOG1272|consen  131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFE------------------------------------------  166 (545)
T ss_pred             CCeeeee--cCCccEEEecCCccceeeeecccceeeee------------------------------------------
Confidence            3466777  68999999999999999999999887654                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                            ..-...|.++.|-.+.++||++....+++||-.  +..+.       .+..| ..|..+.|-|.. .+|++++.
T Consensus       167 ------i~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~--GtElH-------Clk~~-~~v~rLeFLPyH-fLL~~~~~  229 (545)
T KOG1272|consen  167 ------INVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN--GTELH-------CLKRH-IRVARLEFLPYH-FLLVAASE  229 (545)
T ss_pred             ------eehhhhhhhhhhhcchHHHHhhhhceEEEecCC--CcEEe-------ehhhc-Cchhhhcccchh-heeeeccc
Confidence                  223455889999989999999988899999977  32222       23333 457899999998 88999999


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeec
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~  353 (487)
                      .|.++.-|+..|+++    ..+..             -.+.+..+.-+|-+..+-.|. .|+|.+|...+ ..++..+-.
T Consensus       230 ~G~L~Y~DVS~GklV----a~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc  291 (545)
T KOG1272|consen  230 AGFLKYQDVSTGKLV----ASIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC  291 (545)
T ss_pred             CCceEEEeechhhhh----HHHHc-------------cCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh
Confidence            999999999999876    33332             145778888899888887885 59999999987 888888888


Q ss_pred             ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccccc
Q 011368          354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  433 (487)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  433 (487)
                      |.+++               .++++.++|+|+||.+.|..++|||+++-.. ..++.. ..+...++++.  .+.     
T Consensus       292 H~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~Sq--kgl-----  347 (545)
T KOG1272|consen  292 HRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQ--KGL-----  347 (545)
T ss_pred             cCCCc---------------ceEEECCCCcEEeecccccceeEeeeccccc-cceeec-CCCcccccccc--ccc-----
Confidence            98876               5999999999999999999999999998743 333333 34455666664  222     


Q ss_pred             ceeeecccceecCCCC-------CccccccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368          434 NLTRGLYRQAHENSSS-------GHHELSYNLSSKLLHLAWHPTTNLIACANGNS  481 (487)
Q Consensus       434 ~l~~g~~~~~~~w~~~-------~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~  481 (487)
                       |+.+..+...+|...       ........+..+|.++.|.|-+..|-+|-..|
T Consensus       348 -LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  348 -LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             -eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence             666666666999221       11122224556999999999999888776554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.4e-15  Score=132.81  Aligned_cols=201  Identities=15%  Similarity=0.218  Sum_probs=143.7

Q ss_pred             EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      .+++|+++|..|++|+.||++|||++.....                           +.....|.            ..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e  188 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE  188 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence            6899999999999999999999999765543                           34455666            78


Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      |.++.|  +|||+.|++-+.| ..+||+.+++........                                        
T Consensus       189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~----------------------------------------  225 (398)
T KOG0771|consen  189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP----------------------------------------  225 (398)
T ss_pred             ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC----------------------------------------
Confidence            999999  6899999999999 899999999854332110                                        


Q ss_pred             eeeecccCCCceeEEEeCCCC---CE-EEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          196 TKVYPHAHDFNINSISNNSDC---ET-FVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~---~~-l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                           .........+.|+.++   .+ +++ . .-+.|+.||+...... ..+.  ..+.......|.+++.+++| +++
T Consensus       226 -----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~--~~~~~~~~~siSsl~VS~dG-kf~  296 (398)
T KOG0771|consen  226 -----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR--LRKKIKRFKSISSLAVSDDG-KFL  296 (398)
T ss_pred             -----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc--hhhhhhccCcceeEEEcCCC-cEE
Confidence                 2234445667777665   22 222 3 5667777766533221 1110  11222234579999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM  343 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~  343 (487)
                      +.|+.||.|.|++..+-+..    +..+.            .|...|+.+.|+||.+++++- ++....+..+..
T Consensus       297 AlGT~dGsVai~~~~~lq~~----~~vk~------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  297 ALGTMDGSVAIYDAKSLQRL----QYVKE------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEeccCCcEEEEEeceeeee----Eeehh------------hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999999999999876543    22222            357899999999999999975 457777776653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=5.3e-13  Score=114.93  Aligned_cols=157  Identities=17%  Similarity=0.232  Sum_probs=121.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.+|++.    .++|+++-.+. |.|||+.+-+++.....                                      
T Consensus        88 t~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t--------------------------------------  124 (391)
T KOG2110|consen   88 TSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIET--------------------------------------  124 (391)
T ss_pred             CceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhc--------------------------------------
Confidence            669999983    45677765554 99999999876654211                                      


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEE--e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                            ...+...+.++++++++.+++.  + ..|.|.+||..+ -+....       +..|.+.+.+++|+++| .+||
T Consensus       125 ------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~-------I~aH~~~lAalafs~~G-~llA  189 (391)
T KOG2110|consen  125 ------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNT-------INAHKGPLAALAFSPDG-TLLA  189 (391)
T ss_pred             ------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeE-------EEecCCceeEEEECCCC-CEEE
Confidence                  1356666888888888889988  3 789999999984 333333       46899999999999999 9999


Q ss_pred             EEeCCCe-EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCC
Q 011368          271 YSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  343 (487)
Q Consensus       271 ~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~  343 (487)
                      ++++.|+ ||++.+.+++.+    ..|.. ..          ....|.+++|+|++++|++.++ ++|.+|.+..
T Consensus       190 TASeKGTVIRVf~v~~G~kl----~eFRR-G~----------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  190 TASEKGTVIRVFSVPEGQKL----YEFRR-GT----------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EeccCceEEEEEEcCCccEe----eeeeC-Cc----------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            9999885 799999998866    44443 00          0257899999999999998876 9999999864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=9.2e-14  Score=136.65  Aligned_cols=242  Identities=14%  Similarity=0.189  Sum_probs=160.5

Q ss_pred             CCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeec
Q 011368           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (487)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (487)
                      +.|....++.+..|.            ..|..++.+ ++.+.+|++|+.||+|++|+...-.....              
T Consensus      1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------------- 1086 (1431)
T ss_pred             CCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc--------------
Confidence            467778888888888            888899986 46668999999999999999875321100              


Q ss_pred             cccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-CceeEEeec
Q 011368          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDM  244 (487)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-~~~~~~~~~  244 (487)
                                               ..++..++ .....++.++...+++..+|.+ .||.|.+.+++.. .........
T Consensus      1087 -------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1087 -------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred             -------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence                                     01122222 3356788999999999999999 9999999999842 111111101


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCC-EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          245 KPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       245 ~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                      ...........|..-+|...... .++.+..-+.|..||++.....-    ..+.           ..-.+.|++++.+|
T Consensus      1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w----~lk~-----------~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW----RLKN-----------QLRHGLVTSIVIDP 1205 (1431)
T ss_pred             ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH----hhhc-----------CccccceeEEEecC
Confidence            11122222233344444433224 78888889999999999865331    1111           11147899999999


Q ss_pred             CCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC---CCCEEEEEc--CCCcEEEE
Q 011368          324 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGS--YSNLLRIF  397 (487)
Q Consensus       324 ~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~sg~--~dg~i~iw  397 (487)
                      -+.+++.|.. |.+.+||++. +.++..+......           .+   +.+...|   .....++++  ..+.|.+|
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~-----------~i---~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA-----------PI---RHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             CceEEEEecCCceEEEEEeec-CceeecccCcccC-----------Cc---ceEEeeccCCCCceEEEecccCCCceeee
Confidence            9999999975 9999999997 7777776543321           11   3444444   334555544  47899999


Q ss_pred             EeCCCCceeEEEecc
Q 011368          398 SHGVGSAGGITVEAG  412 (487)
Q Consensus       398 d~~~~~~~~~~~~~~  412 (487)
                      ++.+| .....+...
T Consensus      1271 n~~~g-~~~~vl~~s 1284 (1431)
T KOG1240|consen 1271 NMETG-LRQTVLWAS 1284 (1431)
T ss_pred             ecccC-cceEEEEcC
Confidence            99998 555555554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.5e-14  Score=129.66  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=127.2

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-----cEEEEEEecCCCCEEEEEeC
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-----VITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~  274 (487)
                      ....+.++++..++...+|++| .+|.|-.||.+. ...+..++... .+..|.+     .|+++.|+-+| -.+++|+.
T Consensus       172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts  248 (703)
T KOG2321|consen  172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTS  248 (703)
T ss_pred             ccccccceeeeecCccceEEecccCceEEEecchh-hhhheeeeccc-ccCCCccccccCcceEEEecCCc-eeEEeecc
Confidence            4456889999999999999999 899999999994 44444443332 2333433     49999999998 99999999


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~  352 (487)
                      +|.+.|||++..+.+     ....|           +..-+|..+.|.+.  +..+++.+...++|||-.+ +++...+.
T Consensus       249 ~G~v~iyDLRa~~pl-----~~kdh-----------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiE  311 (703)
T KOG2321|consen  249 TGSVLIYDLRASKPL-----LVKDH-----------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIE  311 (703)
T ss_pred             CCcEEEEEcccCCce-----eeccc-----------CCccceeeecccccCCCceEEecchHHhhhccccc-CCceeecc
Confidence            999999999998754     22232           12457889999765  4567777769999999987 77777766


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .....                ..+|+-|++.++.++-.++.+..|=+..-
T Consensus       312 pt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  312 PTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             ccCCc----------------CceeeecCCceEEEecCCCcceeEEcccc
Confidence            54432                48999999999999999998888777654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4e-15  Score=133.99  Aligned_cols=246  Identities=14%  Similarity=0.141  Sum_probs=161.2

Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      .++.||+            +.|++++|  +.+|.+|++|+.|-.+.|||....++....                     
T Consensus        44 ~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~KllhsI---------------------   88 (758)
T KOG1310|consen   44 AELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHSI---------------------   88 (758)
T ss_pred             hhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeeee---------------------
Confidence            5688999            99999999  689999999999999999999866654432                     


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCcee--EEeecCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCF--NIVDMKPSNM  249 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~--~~~~~~~~~~  249 (487)
                                               -.+|...|.++.|-|  +.+.+++| .|..|+++|+...+.--  .-.....+.+
T Consensus        89 -------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~  143 (758)
T KOG1310|consen   89 -------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW  143 (758)
T ss_pred             -------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence                                     279999999999988  56788888 99999999998421100  0000111345


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL  328 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l  328 (487)
                      ..|...|..++..|++|..+.++++||+|+-+|++....+.....   .    +..-......--...++.++|... +|
T Consensus       144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~---~----~~~l~ny~~~lielk~ltisp~rp~~l  216 (758)
T KOG1310|consen  144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED---C----PSILVNYNPQLIELKCLTISPSRPYYL  216 (758)
T ss_pred             hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc---c----cHHHHHhchhhheeeeeeecCCCCceE
Confidence            678888999999999999999999999999999998554321100   0    000000011123567899998765 56


Q ss_pred             EEE-eCCeEEEEeCCCCCceeeeeeccccc-------cccccccc--CCC-----CcceeeEEEEcCCCCEEEEEcCCCc
Q 011368          329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHL-------RPKLCDLY--NND-----SIFDKFECSVSGDGLHFATGSYSNL  393 (487)
Q Consensus       329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~-----~~~~~~~~~~s~d~~~l~sg~~dg~  393 (487)
                      +.| ++-..++||.+...+....-..+...       +...++..  ..+     .+...+-+.|+|+|.-|+..-..-.
T Consensus       217 aVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEh  296 (758)
T KOG1310|consen  217 AVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEH  296 (758)
T ss_pred             EecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeE
Confidence            666 56899999954311111110000000       00011000  000     1112357899999987776555558


Q ss_pred             EEEEEeCCCCceeE
Q 011368          394 LRIFSHGVGSAGGI  407 (487)
Q Consensus       394 i~iwd~~~~~~~~~  407 (487)
                      |+++|+..++....
T Consensus       297 VYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  297 VYLFDVNEDKSPTP  310 (758)
T ss_pred             EEEEeecCCCCcee
Confidence            99999998765433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.2e-13  Score=128.87  Aligned_cols=214  Identities=13%  Similarity=0.142  Sum_probs=134.3

Q ss_pred             cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+.+.+|  +|||+.|+..+.+   ..|.+||+.+++...+                                      
T Consensus       196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l--------------------------------------  235 (427)
T PRK02889        196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVV--------------------------------------  235 (427)
T ss_pred             CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            67889999  6789988877643   3599999988865433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                ....+.+...+|+|||+.|+. . .++...||.++.......       .+..+........|+|+| +.
T Consensus       236 ----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~  297 (427)
T PRK02889        236 ----------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RS  297 (427)
T ss_pred             ----------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CE
Confidence                      223344568899999998875 4 677766665542222222       233344445678899999 77


Q ss_pred             EEEEeC-CCeEEEEEcc--CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEEeC
Q 011368          269 LAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDI  341 (487)
Q Consensus       269 l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iwd~  341 (487)
                      |+..+. +|...||.+.  ++..     +.+..+             ........|+|||++|+..+ +   ..|.+||+
T Consensus       298 l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~-------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        298 IYFTSDRGGAPQIYRMPASGGAA-----QRVTFT-------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             EEEEecCCCCcEEEEEECCCCce-----EEEecC-------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            776654 5666777654  3321     111110             12334678999999998654 2   36999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEeCCCCceeEEEeccCCcccc
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      .+ +... .+......                ....|+|||++|+.++.++   .+++.++. + .....+..+.+.+..
T Consensus       360 ~~-g~~~-~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~  419 (427)
T PRK02889        360 AT-GQVT-ALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVRE  419 (427)
T ss_pred             CC-CCeE-EccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCC
Confidence            76 4432 33222111                2689999999998877543   35555553 3 344555556666677


Q ss_pred             ceEee
Q 011368          419 PILQA  423 (487)
Q Consensus       419 ~~~~~  423 (487)
                      .+++|
T Consensus       420 p~wsp  424 (427)
T PRK02889        420 PSWGP  424 (427)
T ss_pred             CccCC
Confidence            77766

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.8e-13  Score=128.36  Aligned_cols=211  Identities=11%  Similarity=0.024  Sum_probs=135.3

Q ss_pred             cceeEEEEEecCCCcEEEEEe---CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|||+.|+..+   .+..|.+||+.+++...+                                      
T Consensus       202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--------------------------------------  241 (435)
T PRK05137        202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV--------------------------------------  241 (435)
T ss_pred             CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence            77999999  67899888875   346899999988765433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ..+.+.+...+|+|||+.|+..  .++  .|++||+.+ +....        +..+........|+|+| 
T Consensus       242 ----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~~~~~--------Lt~~~~~~~~~~~spDG-  301 (435)
T PRK05137        242 ----------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-GTTTR--------LTDSPAIDTSPSYSPDG-  301 (435)
T ss_pred             ----------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC-CceEE--------ccCCCCccCceeEcCCC-
Confidence                      3445567788999999987653  454  477778873 33322        23344556778999999 


Q ss_pred             CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEE
Q 011368          267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLW  339 (487)
Q Consensus       267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iw  339 (487)
                      +.|+..+. +|  .|.++|+..+..     +.+..             +...+....|+|||++|+... +   ..|.+|
T Consensus       302 ~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~-------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        302 SQIVFESDRSGSPQLYVMNADGSNP-----RRISF-------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             CEEEEEECCCCCCeEEEEECCCCCe-----EEeec-------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence            87877764 33  677778776542     22221             023466788999999998653 2   468888


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC------CcEEEEEeCCCCceeEEEeccC
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      |+.. + ....+..... .               ..+.|+|||++|+..+.+      ..++++++..+..  ..+.. .
T Consensus       364 d~~~-~-~~~~lt~~~~-~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~~-~  422 (435)
T PRK05137        364 KPDG-S-GERILTSGFL-V---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVPT-P  422 (435)
T ss_pred             ECCC-C-ceEeccCCCC-C---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEccC-C
Confidence            8754 2 2333322111 1               378999999998765543      2577778765533  23322 2


Q ss_pred             CccccceEee
Q 011368          414 NENRKPILQA  423 (487)
Q Consensus       414 ~~v~~~~~~~  423 (487)
                      ..+...+++|
T Consensus       423 ~~~~~p~Wsp  432 (435)
T PRK05137        423 GDASDPAWSP  432 (435)
T ss_pred             CCccCcccCC
Confidence            2344555554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=7e-15  Score=130.61  Aligned_cols=305  Identities=12%  Similarity=0.107  Sum_probs=214.0

Q ss_pred             ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      ......|..|.            +.|+.|.|  ...|..|++++.|..|.+||...+..+..                  
T Consensus       132 ~~l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------------------  179 (559)
T KOG1334|consen  132 LRLQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS------------------  179 (559)
T ss_pred             hhhhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccc------------------
Confidence            34556678888            99999999  57899999999999999999988764332                  


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  247 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~  247 (487)
                                                  +..+|...|....|-|  +.+.|+++ .||.+++=.+...+.+..+     .
T Consensus       180 ----------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t-----~  226 (559)
T KOG1334|consen  180 ----------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT-----K  226 (559)
T ss_pred             ----------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc-----e
Confidence                                        2478888888888877  46678887 9999999887755554433     2


Q ss_pred             CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-
Q 011368          248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-  326 (487)
Q Consensus       248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-  326 (487)
                      .+..|.+.|.-++..|+.+..|++++.|+.+.-+|++.+...... .+-+.+   .       .-.-....++..|... 
T Consensus       227 rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~-~cr~~~---~-------~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  227 RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF-VCREAD---E-------KERVGLYTIAVDPRNTN  295 (559)
T ss_pred             ecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee-eeeccC---C-------ccceeeeeEecCCCCcc
Confidence            456799999999999999999999999999999999987533111 111110   0       0012577889998766 


Q ss_pred             EEEEE-eCCeEEEEeCCCCCc-----eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          327 HLLSR-DYMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       327 ~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      .++++ .|..+++||.+.-.+     .+..+..+..        .. +-...|++++++.++.-|.+.-.|-.|+++.-.
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--------~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--------VE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccc--------cc-cCcccceeEEecCCccceeeeecccceEEeccc
Confidence            45554 579999999875211     1222222211        11 333356899999877777777777789999554


Q ss_pred             CCC------------ceeEEEeccCCc--cccceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeE
Q 011368          401 VGS------------AGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLL  463 (487)
Q Consensus       401 ~~~------------~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~  463 (487)
                      .+.            .....+++|.+.  |..+-|-.. ...+     +++|+..|. .+|  +.++.+..+.+-..-|+
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEy-----VvSGSDCGhIFiW~K~t~eii~~MegDr~VVN  440 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEY-----VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN  440 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccce-----EEecCccceEEEEecchhHHHHHhhcccceEe
Confidence            321            123347788654  556666543 3344     678887777 999  55556666665555889


Q ss_pred             EEEEcCCCCEEEEec-CCeEEEEe
Q 011368          464 HLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       464 ~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                      ++.=||--++||+++ +-.+.||.
T Consensus       441 CLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  441 CLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             ccCCCCCCchhhccCCccceeeec
Confidence            999999999999888 44599996

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.3e-13  Score=129.69  Aligned_cols=215  Identities=13%  Similarity=0.099  Sum_probs=135.6

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE-eCC
Q 011368          201 HAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSR  275 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~d  275 (487)
                      ..+...+...+|+|||+.|+..    .+..|++|++.+ +....+     ..+.++   +..+.|+|+| +.|+.. +.+
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l-----~~~~~~---~~~~~~SPDG-~~La~~~~~~  264 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQV-----ASFPRH---NGAPAFSPDG-SKLAFALSKT  264 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEc-----cCCCCC---cCCeEECCCC-CEEEEEEcCC
Confidence            3456678999999999998864    245799999984 333222     122233   4468999999 777655 445


Q ss_pred             C--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--Ce--EEEEeCCCCCceee
Q 011368          276 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN--LKLWDIRMDSTPVA  349 (487)
Q Consensus       276 g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~--i~iwd~~~~~~~~~  349 (487)
                      |  .|.+||+.+++..     .+..             +...+....|+|||+.|+..++  +.  |+++|+.. + ...
T Consensus       265 g~~~I~~~d~~tg~~~-----~lt~-------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g-~~~  324 (429)
T PRK03629        265 GSLNLYVMDLASGQIR-----QVTD-------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-G-APQ  324 (429)
T ss_pred             CCcEEEEEECCCCCEE-----EccC-------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-C-CeE
Confidence            4  5888999876532     2222             1245678899999998887653  44  44446543 3 233


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+.......               ....|+|||++|+..+.+   ..|++||+.++....  +... .......++|  +
T Consensus       325 ~lt~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt~~-~~~~~p~~Sp--D  384 (429)
T PRK03629        325 RITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LTDT-FLDETPSIAP--N  384 (429)
T ss_pred             EeecCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--eCCC-CCCCCceECC--C
Confidence            333222111               368999999999876543   358889998875432  3222 2234567776  7


Q ss_pred             cccccccceeeecccce--ecC--CC-CCccccccccCCCeEEEEEcCC
Q 011368          427 ARRSSLSNLTRGLYRQA--HEN--SS-SGHHELSYNLSSKLLHLAWHPT  470 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~--~~w--~~-~~~~~~~~~~~~~v~~~~~spd  470 (487)
                      ++.     ++..+.++.  .++  .. +.....+..+...+...+|+|-
T Consensus       385 G~~-----i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        385 GTM-----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCE-----EEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            776     777666654  333  33 3344455567788888999983

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=9.3e-14  Score=116.49  Aligned_cols=148  Identities=20%  Similarity=0.275  Sum_probs=104.2

Q ss_pred             eEEEeCCCCCEEEEe-c---C-------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE--eC
Q 011368          208 NSISNNSDCETFVSA-D---D-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SS  274 (487)
Q Consensus       208 ~~i~~s~~~~~l~s~-~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~  274 (487)
                      ..+.|+|+|+.|+.- .   |       +...+|.++..+.....+     .+. ..+.|.+++|+|+| +.|++.  ..
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~   81 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM   81 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence            467899999988774 3   1       335566664333333332     111 33469999999999 776554  35


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----CCeEEEEeCCCCCceeee
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~  350 (487)
                      ++.|.+||++... +    ..+..               ..+..+.|+|+|++|++++    .|.|.+||.+. .+.+..
T Consensus        82 ~~~v~lyd~~~~~-i----~~~~~---------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~  140 (194)
T PF08662_consen   82 PAKVTLYDVKGKK-I----FSFGT---------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST  140 (194)
T ss_pred             CcccEEEcCcccE-e----EeecC---------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence            6799999997322 2    33332               5678999999999999864    27899999985 666655


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEEEEEeC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG  400 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~iwd~~  400 (487)
                      ......                 +.++|||||++|++++.      |+.++||+..
T Consensus       141 ~~~~~~-----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  141 FEHSDA-----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cccCcE-----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            543221                 58999999999998874      7889999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=5.2e-12  Score=106.82  Aligned_cols=229  Identities=15%  Similarity=0.200  Sum_probs=151.2

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccc-----------------cccCCCcceeEee
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF-----------------TSTSHPEYRYKTE   96 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~   96 (487)
                      ....++|+.|..-+++|..+| .+||+.+--++     ...+.+...+-.                 ..+.+|+.++ ..
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke-----~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkv-iI   79 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKE-----SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKV-II   79 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhh-----hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceE-EE
Confidence            355699999999888887665 89999875433     122222222211                 1123333332 22


Q ss_pred             ecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-ceeEeeecCCCCceeeeecccccccccc
Q 011368           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (487)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      +..+.  .-.+..+.+..+|.+|.+.  .  .+|++. ..+.|.||...+. +.......                    
T Consensus        80 WDD~k--~~~i~el~f~~~I~~V~l~--r--~riVvv-l~~~I~VytF~~n~k~l~~~et--------------------  132 (346)
T KOG2111|consen   80 WDDLK--ERCIIELSFNSEIKAVKLR--R--DRIVVV-LENKIYVYTFPDNPKLLHVIET--------------------  132 (346)
T ss_pred             Eeccc--CcEEEEEEeccceeeEEEc--C--CeEEEE-ecCeEEEEEcCCChhheeeeec--------------------
Confidence            33333  2346667777889999983  3  356655 4568999998743 22222110                    


Q ss_pred             ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCC
Q 011368          176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  253 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  253 (487)
                                               ......+.+++-+.+..+||. | .-|.|+|-|+.....-      .+..+.+|.
T Consensus       133 -------------------------~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~  181 (346)
T KOG2111|consen  133 -------------------------RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHD  181 (346)
T ss_pred             -------------------------ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEccc
Confidence                                     122333445544445556665 5 7899999999854431      112357899


Q ss_pred             CcEEEEEEecCCCCEEEEEeCCCe-EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          254 EVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       254 ~~v~~v~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      +.|.|++.+-+| .++|++|..|+ |||||..+++.+    ..+.. .          -....|.+|+|||++.+|++++
T Consensus       182 s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RR-G----------~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  182 SDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRR-G----------VDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             CceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeec-C----------CchheEEEEEeCCCccEEEEEc
Confidence            999999999999 99999999986 899999999876    33332 0          0136899999999999999999


Q ss_pred             C-CeEEEEeCCC
Q 011368          333 Y-MNLKLWDIRM  343 (487)
Q Consensus       333 d-~~i~iwd~~~  343 (487)
                      | |++.|+.++.
T Consensus       246 dKgTlHiF~l~~  257 (346)
T KOG2111|consen  246 DKGTLHIFSLRD  257 (346)
T ss_pred             CCCeEEEEEeec
Confidence            8 9999999875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.4e-12  Score=111.96  Aligned_cols=265  Identities=13%  Similarity=0.125  Sum_probs=158.6

Q ss_pred             cCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...|+|++|-|.+ .-|+.|+.. -|.||..+..-..      .+.++....       ..-.+..-.||          
T Consensus       140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~------~r~~~~~s~-------~~~qvl~~pgh----------  195 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA------NRNIRMMST-------HHLQVLQDPGH----------  195 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc------ccccccccc-------cchhheeCCCC----------
Confidence            4579999999955 678888875 4999987643221      000000000       00011222333          


Q ss_pred             ccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         ..|++++|  ++||..+++++ .|..|.|||..++....+.                                    
T Consensus       196 ---~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------------------------  234 (445)
T KOG2139|consen  196 ---NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------------------------  234 (445)
T ss_pred             ---ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCccccc------------------------------------
Confidence               67999999  68899999987 6789999999998866542                                    


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                 ....+.+.-+.||||+.+|+++ -|+..++|+......+.+        ..-..+.|....|+|.|..+
T Consensus       235 -----------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--------w~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  235 -----------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--------WILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             -----------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--------eeccCCceeeeeecCCCCEE
Confidence                       2445678899999999999999 999999997653322211        12233489999999999444


Q ss_pred             EEEEeCCCeEEEEEccCCccccccc--eeeccccc--ccCccccccc---cccceeEEEEcCCCCEEEEEeC--------
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSA--RILRDAAE--SHGSKSFFTE---IIASISDIKFANDGQHLLSRDY--------  333 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~h~~--~~~~~~~~~~---~~~~v~~v~~s~~~~~l~s~~d--------  333 (487)
                      |++.+..  -++|.+..........  .....|..  .........+   -.+.+.+++|.|.|.+|++.-.        
T Consensus       296 Lf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~  373 (445)
T KOG2139|consen  296 LFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC  373 (445)
T ss_pred             EEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence            4444443  3455544322110000  00000000  0000000111   1367899999999999997421        


Q ss_pred             -CeEEEEeCCCCCceeeeee-----cccccccccccccCCCCcceeeEEEEcC---CCCEEEEEcCCCcEEEEEeC
Q 011368          334 -MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       334 -~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~sg~~dg~i~iwd~~  400 (487)
                       ..|.+||.+. . +...+.     +.+.+                --++|+|   ++.+|..+=..|.+.-|++.
T Consensus       374 k~~i~~fdtr~-s-p~vels~cg~i~ge~P----------------~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  374 KLHISRFDTRK-S-PPVELSYCGMIGGEYP----------------AYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             hhhhhhhcccc-c-CceEEEecccccCCCC----------------ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence             4577888874 3 322222     11222                1466666   56777777667777777664

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.7e-13  Score=128.21  Aligned_cols=212  Identities=14%  Similarity=0.103  Sum_probs=135.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|+|+.|+..+.   +..|.+||+.+++...+                                      
T Consensus       204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--------------------------------------  243 (433)
T PRK04922        204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV--------------------------------------  243 (433)
T ss_pred             CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            67889999  688999888763   34699999988765433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ....+...+.+|+|||+.|+..  .++  .|++||+.++ ....        +..+......++|+|+| 
T Consensus       244 ----------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-~~~~--------lt~~~~~~~~~~~spDG-  303 (433)
T PRK04922        244 ----------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-QLTR--------LTNHFGIDTEPTWAPDG-  303 (433)
T ss_pred             ----------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-CeEE--------CccCCCCccceEECCCC-
Confidence                      2233344578999999987643  444  6999999843 3322        23344445678999999 


Q ss_pred             CEEEEEeC-CCe--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEE
Q 011368          267 NLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLW  339 (487)
Q Consensus       267 ~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iw  339 (487)
                      +.|+..+. +|.  |.++|+.+++.     +.+..+             ......++|+|||++|+..+ +   ..|.+|
T Consensus       304 ~~l~f~sd~~g~~~iy~~dl~~g~~-----~~lt~~-------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        304 KSIYFTSDRGGRPQIYRVAASGGSA-----ERLTFQ-------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCe-----EEeecC-------------CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence            87777664 444  55566655542     111110             12345689999999998653 2   369999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEEEEeCCCCceeEEEeccCCcc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      |+.+ +... .+..... .               ....|+|||++|+..+.+   +.|+++++..+  ....+..+.+.+
T Consensus       366 d~~~-g~~~-~Lt~~~~-~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~  425 (433)
T PRK04922        366 DLST-GSVR-TLTPGSL-D---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEV  425 (433)
T ss_pred             ECCC-CCeE-ECCCCCC-C---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCC
Confidence            9975 4433 3332111 1               267899999998876653   35777777533  344454555555


Q ss_pred             ccceEee
Q 011368          417 RKPILQA  423 (487)
Q Consensus       417 ~~~~~~~  423 (487)
                      ..++++|
T Consensus       426 ~~p~wsp  432 (433)
T PRK04922        426 REPAWSP  432 (433)
T ss_pred             CCCccCC
Confidence            5566554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=8.6e-12  Score=105.51  Aligned_cols=249  Identities=13%  Similarity=0.159  Sum_probs=155.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCC-CCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ....+++|  +.|...++.|..+| .+||+.+--+......... .-.+.-+.|....-.++..+..+.........||.
T Consensus         6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            44566899  57777888777665 9999987522111111100 01111111222222222222222222333444876


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                      .+...........+|.++.+.+  ..|++.-.+.|++|.....-+.+..++.     ......+.++.-+.+. .+||.-
T Consensus        83 ~k~~~i~el~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkGlC~~~~~~~k-~~LafP  154 (346)
T KOG2111|consen   83 LKERCIIELSFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKGLCSLCPTSNK-SLLAFP  154 (346)
T ss_pred             ccCcEEEEEEeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeec-----ccCCCceEeecCCCCc-eEEEcC
Confidence            5444443345678899999985  4777777889999998844444433311     1112234444433333 455543


Q ss_pred             e-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-Ce-EEEEeCCCCCceee
Q 011368          273 S-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LKLWDIRMDSTPVA  349 (487)
Q Consensus       273 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~-i~iwd~~~~~~~~~  349 (487)
                      + .-|.|+|-|+...+.-  .....             ..|.+.|.+++.+.+|..+|+++. |+ |||||..+ +..+.
T Consensus       155 g~k~GqvQi~dL~~~~~~--~p~~I-------------~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~  218 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPN--APSII-------------NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQ  218 (346)
T ss_pred             CCccceEEEEEhhhcCcC--CceEE-------------EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEee
Confidence            3 4689999999875421  11333             446899999999999999999975 55 79999997 88888


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +++......             ++.+++||||+.+||++|+-|+++|+.++..
T Consensus       219 E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  219 ELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            887544322             2359999999999999999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=5.7e-13  Score=127.16  Aligned_cols=209  Identities=15%  Similarity=0.169  Sum_probs=132.0

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..+.+.+.+.+|+|||+.|+..+.+   ..|.+||+.+++..                         .+..+.       
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-------------------------~l~~~~-------  239 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-------------------------VVANFK-------  239 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-------------------------EeecCC-------
Confidence            4567789999999999999887643   35999999877531                         112222       


Q ss_pred             cccccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                              +.+...+|  +|||+.|+ +.+.++...||.++  ++....                               
T Consensus       240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------------------------------  278 (427)
T PRK02889        240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------------------------------  278 (427)
T ss_pred             --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEE-------------------------------
Confidence                    33567889  68888876 45778877777654  333222                               


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                       +..+........|+|||+.|+..  .++...+|.+...+...+.+     ...+  ......+
T Consensus       279 -----------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-----t~~g--~~~~~~~  334 (427)
T PRK02889        279 -----------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-----TFTG--SYNTSPR  334 (427)
T ss_pred             -----------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-----ecCC--CCcCceE
Confidence                             13344455678899999988765  45666777654222222211     1121  2234578


Q ss_pred             EecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-C-
Q 011368          261 FHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M-  334 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~-  334 (487)
                      |+|+| ++|+..+.++   .|.+||+.+++.     +.+..              ........|+|||++|+... + + 
T Consensus       335 ~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~--------------~~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        335 ISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTD--------------TTRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             ECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccC--------------CCCccCceECCCCCEEEEEEecCCC
Confidence            99999 8888777654   699999987653     22222              12235679999999988764 2 3 


Q ss_pred             -eEEEEeCCCCCceeeeeecccc
Q 011368          335 -NLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       335 -~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                       .+.+.++.  +.....+..+.+
T Consensus       395 ~~l~~~~~~--g~~~~~l~~~~g  415 (427)
T PRK02889        395 SVLAAVSSD--GRIKQRLSVQGG  415 (427)
T ss_pred             EEEEEEECC--CCceEEeecCCC
Confidence             35555653  555555554433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.3e-13  Score=127.86  Aligned_cols=207  Identities=13%  Similarity=0.098  Sum_probs=132.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...+...+.+.+|+|||+.|+..+.+   ..|.+|++.+++.                            ..+..+.   
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------~~l~~~~---  247 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------ELVASFR---  247 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------------EEeccCC---
Confidence            34566789999999999999987633   4699999877643                            1122222   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEE-EeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                               +...+.+|  +|+|+.++. .+.++  .|.+||+.+++...+                             
T Consensus       248 ---------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l-----------------------------  287 (433)
T PRK04922        248 ---------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL-----------------------------  287 (433)
T ss_pred             ---------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC-----------------------------
Confidence                     33457789  678887754 45555  588999988765433                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe--EEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                                         ..+.......+|+|||+.|+.+  .++.  |+++++.. +....+      +.  ......
T Consensus       288 -------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~~~~l------t~--~g~~~~  339 (433)
T PRK04922        288 -------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GSAERL------TF--QGNYNA  339 (433)
T ss_pred             -------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCeEEe------ec--CCCCcc
Confidence                               3344445678999999988775  4554  66666653 322222      11  122344


Q ss_pred             EEEEecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368          258 SAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      .++|+|+| +.|+..+.++   .|.+||+.+++.     +.+..              ........|+|||++|+..+ +
T Consensus       340 ~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~--------------~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        340 RASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTP--------------GSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCC--------------CCCCCCceECCCCCEEEEEEec
Confidence            68999999 8887765433   689999987653     22222              11234568999999887653 2


Q ss_pred             ---CeEEEEeCCCCCceeeeeeccc
Q 011368          334 ---MNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       334 ---~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                         ..|.++++.  +.....+..+.
T Consensus       400 ~g~~~L~~~~~~--g~~~~~l~~~~  422 (433)
T PRK04922        400 GGRGVLAAVSTD--GRVRQRLVSAD  422 (433)
T ss_pred             CCceEEEEEECC--CCceEEcccCC
Confidence               467777774  44555555443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=1.4e-11  Score=113.94  Aligned_cols=321  Identities=12%  Similarity=0.098  Sum_probs=172.6

Q ss_pred             CEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368           45 DYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (487)
Q Consensus        45 ~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~  123 (487)
                      +++ ++-..+|.|.|.|..+.+.                           +..+....            ..-..+.|  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~---------------------------~~~i~~~~------------~~h~~~~~--   44 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKV---------------------------VARIPTGG------------APHAGLKF--   44 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SE---------------------------EEEEE-ST------------TEEEEEE---
T ss_pred             cEEEEEecCCCEEEEEECCCCeE---------------------------EEEEcCCC------------CceeEEEe--
Confidence            344 4455789999999876653                           45555432            22234556  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      ++||+++++++.|+.|.++|+.+++.....                                                .-
T Consensus        45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------------------------------------------------~~   76 (369)
T PF02239_consen   45 SPDGRYLYVANRDGTVSVIDLATGKVVATI------------------------------------------------KV   76 (369)
T ss_dssp             TT-SSEEEEEETTSEEEEEETTSSSEEEEE------------------------------------------------E-
T ss_pred             cCCCCEEEEEcCCCeEEEEECCcccEEEEE------------------------------------------------ec
Confidence            789999999999999999999998866542                                                22


Q ss_pred             CCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE-eCCCeEEE
Q 011368          204 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  280 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i  280 (487)
                      .....++++++||++++++  ..+.+.++|.++. +.++.+.............+..+..+|.. ..++.. -+.+.|.+
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~v  154 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWV  154 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEE
Confidence            3346789999999999887  7999999999854 34444322211112244567888888888 545554 44588888


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecccccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLR  358 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~  358 (487)
                      .|....+..  ..+.+..              ........|+|+++|++++.  .+.|-++|.++ ++.+..+.....+-
T Consensus       155 Vdy~d~~~~--~~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~  217 (369)
T PF02239_consen  155 VDYSDPKNL--KVTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPH  217 (369)
T ss_dssp             EETTTSSCE--EEEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBE
T ss_pred             EEecccccc--ceeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-ceEEEEeecccccc
Confidence            887765322  1122222              34567899999999988764  38999999986 66665554322111


Q ss_pred             c-ccccccCCCCcceeeEEEEc--CCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccce
Q 011368          359 P-KLCDLYNNDSIFDKFECSVS--GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL  435 (487)
Q Consensus       359 ~-~~~~~~~~~~~~~~~~~~~s--~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  435 (487)
                      + ....+.+..     ....|.  ..+...++.-....+.+|+..+. +...++.....+ --+..+|  +++.     +
T Consensus       218 ~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lFi~thP--~s~~-----v  283 (369)
T PF02239_consen  218 PGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LFIKTHP--DSRY-----V  283 (369)
T ss_dssp             ETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---EE--T--T-SE-----E
T ss_pred             ccccccccCCC-----cceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ceeecCC--CCcc-----E
Confidence            0 000001100     012222  22333322222235567777766 345556554443 3333344  4444     3


Q ss_pred             eee----cccce-ecCCCCCccc-ccc--ccCCCeEEEEEcCCCCEEEEec--CC-eEEEEeC
Q 011368          436 TRG----LYRQA-HENSSSGHHE-LSY--NLSSKLLHLAWHPTTNLIACAN--GN-SLFFHYA  487 (487)
Q Consensus       436 ~~g----~~~~~-~~w~~~~~~~-~~~--~~~~~v~~~~~spd~~~la~~s--~~-~~~i~~~  487 (487)
                      ...    ..... .+++...+.. ...  ....++.++.|++||+.+-++.  .+ .+.+|.+
T Consensus       284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             EeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            333    22222 4553333221 111  2334599999999999766554  44 5888864

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=6.6e-13  Score=115.15  Aligned_cols=260  Identities=13%  Similarity=0.136  Sum_probs=171.4

Q ss_pred             ccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        31 h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ....|+.++|.-++  +.|...+.|..+...........                     +...-+.+.....       
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~---------------------s~~~~~~~~~l~~-------  105 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS---------------------SSLDDAKTVSLGT-------  105 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccc---------------------ccccccccccccc-------
Confidence            35578888888665  34444446666776666554431                     0000011222222       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ++|..++.   .+ ..|++|-.+|.+.+|....+.....                                    
T Consensus       106 -----~~I~gl~~---~d-g~Litc~~sG~l~~~~~k~~d~hss------------------------------------  140 (412)
T KOG3881|consen  106 -----KSIKGLKL---AD-GTLITCVSSGNLQVRHDKSGDLHSS------------------------------------  140 (412)
T ss_pred             -----ccccchhh---cC-CEEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence                 67777776   33 4688888999999999986542210                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEE-e-cC--CeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEec
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVS-A-DD--LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP  263 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p  263 (487)
                            ....  ..-..++..+.-++....|++ | ..  ..+.+||++...+.+.--+.+...+. .-.-.++.+.|-|
T Consensus       141 ------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  141 ------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             ------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence                  0000  122245666666665555554 6 66  78999999955333321111111111 0112456788887


Q ss_pred             C--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEe
Q 011368          264 I--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD  340 (487)
Q Consensus       264 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd  340 (487)
                      .  . ..||+++.-+.+|+||.+.++..   +..|..             -+.+++++...|.|+++++|.. +.+..||
T Consensus       213 g~~~-~~fat~T~~hqvR~YDt~~qRRP---V~~fd~-------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  213 GSPN-YKFATITRYHQVRLYDTRHQRRP---VAQFDF-------------LENPISSTGLTPSGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             CCCC-ceEEEEecceeEEEecCcccCcc---eeEecc-------------ccCcceeeeecCCCcEEEEecccchhheec
Confidence            6  5 89999999999999999987643   234433             1568999999999999999976 9999999


Q ss_pred             CCCCCceeee-eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          341 IRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ++. ++.... +++..+.+               +++..+|.+++|+++|-|..+||+|+++.+.
T Consensus       276 ~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  276 LRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            997 555444 77666644               5999999999999999999999999998533

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=5.6e-11  Score=102.92  Aligned_cols=291  Identities=11%  Similarity=0.136  Sum_probs=185.3

Q ss_pred             hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEec---CCcEEEEEeeC--CcCCCCcccchhhhhcccccccc
Q 011368           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTST   86 (487)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~   86 (487)
                      ..|++...-|+....+...+...++-|+|+|++++|.++..   +|.|.-|.++.  ++.                    
T Consensus        19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L--------------------   78 (346)
T COG2706          19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL--------------------   78 (346)
T ss_pred             EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE--------------------
Confidence            44776666677777778888899999999999999998864   47788888764  332                    


Q ss_pred             CCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-cceeEeeecCCCCceeee
Q 011368           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSE  164 (487)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~  164 (487)
                           .++.....-.            .+-..+++  ++++++++++. .-|.|.++-++. |.+......-...     
T Consensus        79 -----t~ln~~~~~g------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~-----  134 (346)
T COG2706          79 -----TFLNRQTLPG------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT-----  134 (346)
T ss_pred             -----EEeeccccCC------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC-----
Confidence                 1111111111            23377888  68899998886 568999999865 4333221100000     


Q ss_pred             eccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEe
Q 011368          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  242 (487)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~  242 (487)
                                                  +.. .. .......+....+.|+++++++.  .--.|.+|++.. +..... 
T Consensus       135 ----------------------------g~~-p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~-  182 (346)
T COG2706         135 ----------------------------GSG-PH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPA-  182 (346)
T ss_pred             ----------------------------CCC-CC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-Cccccc-
Confidence                                        000 00 01112237889999999999997  566899999994 332211 


Q ss_pred             ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368          243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  321 (487)
Q Consensus       243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~  321 (487)
                        .+..+ ......+.+.|+|++ ++..+..+ +++|.+|......-.   ...++.+...|   .-|.+ ..+..+|..
T Consensus       183 --~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP---~dF~g-~~~~aaIhi  251 (346)
T COG2706         183 --DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLP---EDFTG-TNWAAAIHI  251 (346)
T ss_pred             --ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCc---cccCC-CCceeEEEE
Confidence              11223 334556999999999 87777765 899999998874111   12222211111   11222 467889999


Q ss_pred             cCCCCEEEEEeC--CeEEEEeCCCCCceeeeeecccc-cccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-CcEEEE
Q 011368          322 ANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIF  397 (487)
Q Consensus       322 s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~i~iw  397 (487)
                      ++||++|.++..  ..|.+|.+...+..+..+..... ..          +   .+...|++.|++|+++..+ ..|.+|
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~----------~---PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ----------F---PRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc----------C---CccceeCCCCCEEEEEccCCCcEEEE
Confidence            999999999853  78999988754444433322111 10          0   1489999999999998865 568888


Q ss_pred             EeCCC
Q 011368          398 SHGVG  402 (487)
Q Consensus       398 d~~~~  402 (487)
                      .+...
T Consensus       319 ~~d~~  323 (346)
T COG2706         319 ERDKE  323 (346)
T ss_pred             EEcCC
Confidence            88754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=3e-15  Score=141.13  Aligned_cols=278  Identities=17%  Similarity=0.191  Sum_probs=201.5

Q ss_pred             eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      +.++.+.+|.            ++|.|+.|  ...|.++++|+.|..++||.++++.+...                   
T Consensus       181 k~ikrLlgH~------------naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------  227 (1113)
T KOG0644|consen  181 KNIKRLLGHR------------NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS-------------------  227 (1113)
T ss_pred             HHHHHHHhhh------------hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-------------------
Confidence            3455567777            89999999  67899999999999999999988876544                   


Q ss_pred             ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                                  ..||.+.|+.++.+.+..+++++ .|..|++|.+..+ ..+.       .+.
T Consensus       228 ----------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-~pvs-------vLr  271 (1113)
T KOG0644|consen  228 ----------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-APVS-------VLR  271 (1113)
T ss_pred             ----------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecCCC-chHH-------HHh
Confidence                                        38999999999999999899999 9999999999944 4443       468


Q ss_pred             CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      +|.+.|++++|+|-.     +.+.||++++||.+-.-      ..+...+..      +. ...-+.++.|..++.-+++
T Consensus       272 ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp~~------~~-~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  272 GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRPLK------FT-EKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCCCC------cc-cccceeeeecccccccccc
Confidence            999999999999963     77889999999998211      111110000      00 0245677788888888888


Q ss_pred             Ee-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368          331 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       331 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~  408 (487)
                      ++ ++.-..|.+..       +..+...           .+    -+.++.| ..+.+++-.+-.+.+|++.+| ...+.
T Consensus       334 gs~d~ea~n~e~~~-------l~~~~~~-----------li----f~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~  390 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQ-------LAWRSNL-----------LI----FVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHN  390 (1113)
T ss_pred             ccCCcccccchhhH-------hhhhccc-----------eE----EEeccccccccceeeeeeeEeeeeecccc-hhhhh
Confidence            86 47777776642       1111110           00    1122222 245667777889999999998 55888


Q ss_pred             EeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc--c-ccccCCCeEEEEEcCCCCEEEEec-CCeEE
Q 011368          409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE--L-SYNLSSKLLHLAWHPTTNLIACAN-GNSLF  483 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~--~-~~~~~~~v~~~~~spd~~~la~~s-~~~~~  483 (487)
                      +.+|...+..+.+.|. +.++     ..+++.|++ .+|+..+-..  . ..+ ...+.+-+||+||..++... .+.+|
T Consensus       391 l~ghsd~~yvLd~Hpf-n~ri-----~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~  463 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPF-NPRI-----AMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLY  463 (1113)
T ss_pred             hcccccceeeeeecCC-CcHh-----hhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceE
Confidence            9999999999999986 5565     788999999 9995433222  1 134 44566889999999988666 55577


Q ss_pred             EEe
Q 011368          484 FHY  486 (487)
Q Consensus       484 i~~  486 (487)
                      |+.
T Consensus       464 i~g  466 (1113)
T KOG0644|consen  464 ILG  466 (1113)
T ss_pred             Eec
Confidence            764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=3e-13  Score=121.81  Aligned_cols=190  Identities=13%  Similarity=0.047  Sum_probs=131.9

Q ss_pred             CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcc---
Q 011368          213 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL---  288 (487)
Q Consensus       213 s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~---  288 (487)
                      .|.+--+..| .-|.|.+.|... ....+++...   ..-....|+|+.|-|.+...++++-.+|.+.+||..-...   
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh-hHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            4567788888 899999988773 2222211110   1112367999999998878889999999999998743110   


Q ss_pred             -ccc---cceeeccccc----ccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccc
Q 011368          289 -CDH---SARILRDAAE----SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP  359 (487)
Q Consensus       289 -~~~---~~~~~~~h~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~  359 (487)
                       ...   .-..|..|..    ...+......-++.|...+|+|||++||+.+ ||.+||||..+ .+.+..++.--+.. 
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL-  335 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL-  335 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence             000   0001111100    0011111112245889999999999999875 79999999987 66666665443322 


Q ss_pred             ccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          360 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                                    .+++|||||+||++|++|-.|.||.+..+ ..+..-++|+.+|..++|-|
T Consensus       336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence                          59999999999999999999999999876 56788899999999999986

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.6e-11  Score=110.35  Aligned_cols=278  Identities=10%  Similarity=0.098  Sum_probs=158.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+.+..++|++|+++|.+. +..++|++..+....                          +....             
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~--------------------------lt~~~-------------   73 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV--------------------------LCVEL-------------   73 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE--------------------------EEecc-------------
Confidence            34578889999999998875 568999998766321                          11111             


Q ss_pred             cccceeEEEEEecCCCcEEEEE-----eC-----CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          112 IEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~-----~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                        ..+.++.|  +|-+.+|.+-     ..     .-.+++|++.++............. .+..|...+........+.-
T Consensus        74 --~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev  148 (566)
T KOG2315|consen   74 --KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEV  148 (566)
T ss_pred             --ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceE
Confidence              24688888  5677787762     12     2457799998843322211111110 01111111111111111110


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEE---e---cCCeEEEEEccCCCceeEEeecCCCCCCCCC
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVS---A---DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  253 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s---~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  253 (487)
                      ..      ++........-.-|...|..+.++|.  ...+|+   +   .-+.++||.....+... .+.  ..++.  .
T Consensus       149 ~f------~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-~~a--~ksFF--k  217 (566)
T KOG2315|consen  149 QF------YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-PVA--NKSFF--K  217 (566)
T ss_pred             EE------EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-hhh--hcccc--c
Confidence            00      11111111111335677888889885  344554   1   34579999877322211 000  00111  1


Q ss_pred             CcEEEEEEecCCCCEEEEEeC--C---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          254 EVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       254 ~~v~~v~~~p~~~~~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                      ..-..+.|++-|..+|+.++.  |         .++++.++......    -.+..              .++|.++.|+
T Consensus       218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~----V~L~k--------------~GPVhdv~W~  279 (566)
T KOG2315|consen  218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS----VPLLK--------------EGPVHDVTWS  279 (566)
T ss_pred             cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE----EecCC--------------CCCceEEEEC
Confidence            122457788877444444433  2         36777777632221    22222              5899999999


Q ss_pred             CCCCEEEEE-eC--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEE
Q 011368          323 NDGQHLLSR-DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRI  396 (487)
Q Consensus       323 ~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~i  396 (487)
                      |+|+-++++ +.  -.+.|||++  +.++..+.....                 .++-|+|.|++|+.+|-+   |.|-|
T Consensus       280 ~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egpR-----------------N~~~fnp~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  280 PSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGPR-----------------NTAFFNPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCCc-----------------cceEECCCCCEEEEeecCCCCCceEE
Confidence            999888765 33  899999997  677766653332                 489999999999988765   78999


Q ss_pred             EEeCCC
Q 011368          397 FSHGVG  402 (487)
Q Consensus       397 wd~~~~  402 (487)
                      ||+.+.
T Consensus       341 wDv~n~  346 (566)
T KOG2315|consen  341 WDVPNR  346 (566)
T ss_pred             Eeccch
Confidence            999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.54  E-value=2.2e-12  Score=119.20  Aligned_cols=291  Identities=12%  Similarity=0.098  Sum_probs=157.5

Q ss_pred             EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      ..+.|+|||+++++++.||.|.++|+.+.+.                           +.+++.-             ..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~~   79 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------GN   79 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------SE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------CC
Confidence            4578999999999999999999999987764                           3444432             34


Q ss_pred             eeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecC------CCCceeeeeccccccccccccCCCCcceeeee
Q 011368          116 INRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMD------HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                      ...+++  ++||+++++++ .++.+.++|..+.+..+.....      ..+.+..+...+....++..........  ..
T Consensus        80 ~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~--vV  155 (369)
T PF02239_consen   80 PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW--VV  155 (369)
T ss_dssp             EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE--EE
T ss_pred             cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE--EE
Confidence            677888  68999988775 7899999999987766553221      1223333333333222222222222111  11


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                      .+.....................|+|++++++.+  .+..|-++|.++ ++....++..   -..|......+ -+|...
T Consensus       156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g---~~p~~~~~~~~-php~~g  230 (369)
T PF02239_consen  156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTG---KKPHPGPGANF-PHPGFG  230 (369)
T ss_dssp             ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-S---SSBEETTEEEE-EETTTE
T ss_pred             EeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-ceEEEEeecc---ccccccccccc-cCCCcc
Confidence            2221222221112344567789999999988775  778999999984 4444444322   12233333332 122210


Q ss_pred             ---------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE----eC
Q 011368          267 ---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DY  333 (487)
Q Consensus       267 ---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~----~d  333 (487)
                               ...++.-....+.+||..+.+.+    +.+..              .+.-.-+..+|+++++.+.    .+
T Consensus       231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv----~~I~~--------------~G~glFi~thP~s~~vwvd~~~~~~  292 (369)
T PF02239_consen  231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV----KTIPT--------------QGGGLFIKTHPDSRYVWVDTFLNPD  292 (369)
T ss_dssp             EEEEEEBSSSSEEEEEE--TTT-STTTBTSEE----EEEE---------------SSSS--EE--TT-SEEEEE-TT-SS
T ss_pred             eEEeeccccceecccccCCccccchhhcCeEE----EEEEC--------------CCCcceeecCCCCccEEeeccCCCC
Confidence                     22212222234455666665544    44443              1233777889999999986    34


Q ss_pred             -CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC--CcEEEEEeCCCCceeEEE
Q 011368          334 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--NLLRIFSHGVGSAGGITV  409 (487)
Q Consensus       334 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d--g~i~iwd~~~~~~~~~~~  409 (487)
                       +.|.++|.++ .+.+..+.......              +..+.|++||+++.....+  +.|.|||..+.+. ...+
T Consensus       293 ~~~v~viD~~t-l~~~~~i~~~~~~~--------------~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~-~~~i  355 (369)
T PF02239_consen  293 ADTVQVIDKKT-LKVVKTITPGPGKR--------------VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE-KKRI  355 (369)
T ss_dssp             HT-EEEEECCG-TEEEE-HHHHHT----------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE-EEEE
T ss_pred             CceEEEEECcC-cceeEEEeccCCCc--------------EeccEECCCCCEEEEEEecCCCEEEEEECCCcEE-EEEE
Confidence             8999999987 55556655333310              1489999999987665544  3699999999844 4433

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=4.8e-10  Score=104.03  Aligned_cols=221  Identities=12%  Similarity=0.140  Sum_probs=133.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeC----CCcEEEEEcccc--ceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      .....+++  ++++++|.++..    ++.|..|++...  ++..+..                                 
T Consensus        37 ~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~---------------------------------   81 (345)
T PF10282_consen   37 ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS---------------------------------   81 (345)
T ss_dssp             SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred             CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee---------------------------------
Confidence            44677888  578888888765    578999988764  4333211                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecC------CCCCCCCCCcEEEE
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSA  259 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~v  259 (487)
                                  ..........++++|++++|+++  .++.|.++++...+.........      +...........++
T Consensus        82 ------------~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v  149 (345)
T PF10282_consen   82 ------------VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV  149 (345)
T ss_dssp             ------------EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred             ------------eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence                        01133445678999999999998  79999999999655544432110      11111233557899


Q ss_pred             EEecCCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeE
Q 011368          260 EFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL  336 (487)
Q Consensus       260 ~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i  336 (487)
                      .++|++ +++++.. ....|.+|++............+..            ......+.++|+|+++++....  ++.|
T Consensus       150 ~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v  216 (345)
T PF10282_consen  150 VFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTV  216 (345)
T ss_dssp             EE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             EECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence            999999 7776654 3568999999876521110111111            0135678999999999988764  3999


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG  400 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~  400 (487)
                      .++++......+..+..-... +.  .....   .....++++|||++|+++. ..+.|.+|++.
T Consensus       217 ~v~~~~~~~g~~~~~~~~~~~-~~--~~~~~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  217 SVFDYDPSDGSLTEIQTISTL-PE--GFTGE---NAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEESC-ET--TSCSS---SSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEeecccCCceeEEEEeeec-cc--ccccc---CCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999988322222222111100 00  00000   0125899999999988766 45789999994

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=2e-12  Score=112.20  Aligned_cols=256  Identities=14%  Similarity=0.177  Sum_probs=170.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|..++|--.+..+.+...+.|..+....+....+....                                    |   
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~------------------------------------~---   96 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL------------------------------------D---   96 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccccc------------------------------------c---
Confidence            6788888853334445555557777777777665433221                                    0   


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                       .... .......|..++..  ...|++| .+|.+.+|..+.+...-.    ++..+. ....+..+.-++..+.++++|
T Consensus        97 -~~~~-~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~~r~~~~~p~Iva~G  167 (412)
T KOG3881|consen   97 -DAKT-VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYDVRQTDTDPYIVATG  167 (412)
T ss_pred             -cccc-cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeee-cCCceeeeccCCCCCceEecC
Confidence             0000 13445666666654  3477788 999999999984431100    001112 224566777777776788889


Q ss_pred             eCC--CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeC-CeEEEEeCCCCCce
Q 011368          273 SSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTP  347 (487)
Q Consensus       273 ~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d-~~i~iwd~~~~~~~  347 (487)
                      +..  ..+.|||+++.+      ++|... ..+.-.--+ .-.-+++++.|-+.  ...+++++. +.+++||.+.+.+|
T Consensus       168 Gke~~n~lkiwdle~~~------qiw~aK-NvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP  239 (412)
T KOG3881|consen  168 GKENINELKIWDLEQSK------QIWSAK-NVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP  239 (412)
T ss_pred             chhcccceeeeecccce------eeeecc-CCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence            998  899999999874      666652 111111000 01246788899877  778888865 99999999988899


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  427 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  427 (487)
                      +..+...+.++               +++...|.+++|++|..-|.+..+|++.+......+                  
T Consensus       240 V~~fd~~E~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~------------------  286 (412)
T KOG3881|consen  240 VAQFDFLENPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL------------------  286 (412)
T ss_pred             eeEeccccCcc---------------eeeeecCCCcEEEEecccchhheecccCceeecccc------------------
Confidence            99998877755               589999999999999999999999999874432222                  


Q ss_pred             ccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          428 RRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                                                  .+..+.|.++..||.+++||+++ +..+.||.
T Consensus       287 ----------------------------kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  287 ----------------------------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ----------------------------CCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence                                        24445667777777777777777 44466664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=5e-13  Score=120.46  Aligned_cols=163  Identities=10%  Similarity=0.176  Sum_probs=107.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc-CCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH-NPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  192 (487)
                      ..|+++.|.|. +...++.+-.+|.+.++|.+--.-..-..         ... .+++..+... .....         .
T Consensus       220 tsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~---------~~~-~k~~~~f~i~t~ksk~---------~  279 (636)
T KOG2394|consen  220 SSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPS---------YQA-LKDGDQFAILTSKSKK---------T  279 (636)
T ss_pred             cceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCc---------ccc-cCCCCeeEEeeeeccc---------c
Confidence            67999999874 44567777789999999873211000000         000 0000000000 00000         0


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                      ..++..+ .--.+.|+..+|+|||++||+- .||.++|+|..+.. .+-       .++..-+...|++|+||| ++|++
T Consensus       280 rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg-------~mkSYFGGLLCvcWSPDG-KyIvt  349 (636)
T KOG2394|consen  280 RNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLG-------VMKSYFGGLLCVCWSPDG-KYIVT  349 (636)
T ss_pred             CCcccee-EeccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHH-------HHHhhccceEEEEEcCCc-cEEEe
Confidence            0111111 2234589999999999999998 99999999999543 221       234455678999999999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                      |++|..|.||.+..++.+      -.+           .+|..+|..|+|.|
T Consensus       350 GGEDDLVtVwSf~erRVV------ARG-----------qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEERRVV------ARG-----------QGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCcceEEEEEeccceEE------Eec-----------cccccceeeEeecc
Confidence            999999999999987643      233           35799999999997

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.7e-12  Score=108.89  Aligned_cols=117  Identities=14%  Similarity=0.292  Sum_probs=87.1

Q ss_pred             CCCceeEEEeCCCCCEEEE--e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---CC
Q 011368          203 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG  276 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg  276 (487)
                      ..++|.+++|+|+|+.|++  | .++.|.+||++ ......        +  +...+..+.|+|+| ++|++++.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence            4556999999999998765  4 67899999997 333222        1  23567889999999 99998875   46


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-------CCeEEEEeCCCCCceee
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-------d~~i~iwd~~~~~~~~~  349 (487)
                      .|.+||.++.+.+    ..++.               ..+..++|+|||++++++.       |+.++||+..  ++.+.
T Consensus       126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~  184 (194)
T PF08662_consen  126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY  184 (194)
T ss_pred             EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence            7999999976543    22222               3578999999999999753       5889999985  56555


Q ss_pred             eee
Q 011368          350 TFK  352 (487)
Q Consensus       350 ~~~  352 (487)
                      ...
T Consensus       185 ~~~  187 (194)
T PF08662_consen  185 KKP  187 (194)
T ss_pred             ecc
Confidence            443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.4e-12  Score=122.48  Aligned_cols=197  Identities=14%  Similarity=0.112  Sum_probs=130.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.                            ..+..+.   
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------~~l~~~~---  245 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------ELVGNFP---  245 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------------EEeecCC---
Confidence            3456778999999999999988763   46899999987753                            2233333   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEE-EEeCCCc--EEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                               +.+...+|  +|||+.|+ +.+.++.  |.+||+.++....+                             
T Consensus       246 ---------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L-----------------------------  285 (435)
T PRK05137        246 ---------GMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL-----------------------------  285 (435)
T ss_pred             ---------CcccCcEE--CCCCCEEEEEEecCCCceEEEEECCCCceEEc-----------------------------
Confidence                     55678889  67898775 4455555  66678777764432                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                                         ..+........|+|||+.|+..  .++  .|+++|+. ++....+        ......+.
T Consensus       286 -------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~l--------t~~~~~~~  337 (435)
T PRK05137        286 -------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRI--------SFGGGRYS  337 (435)
T ss_pred             -------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEe--------ecCCCccc
Confidence                               3445556778999999988775  333  67888876 3333322        12234456


Q ss_pred             EEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368          258 SAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      ...|+|+| +.|+..+.+   ..|.+||+..+..     +.+..              ...+..+.|+|||++|+... +
T Consensus       338 ~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~--------------~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        338 TPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTS--------------GFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccC--------------CCCCCCCeECCCCCEEEEEEcc
Confidence            68899999 888776643   3678888765431     22222              12356789999999887542 2


Q ss_pred             ------CeEEEEeCCC
Q 011368          334 ------MNLKLWDIRM  343 (487)
Q Consensus       334 ------~~i~iwd~~~  343 (487)
                            ..++++|+..
T Consensus       398 ~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        398 PGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CCCCCcceEEEEECCC
Confidence                  2577778753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=5.1e-10  Score=103.84  Aligned_cols=269  Identities=12%  Similarity=0.125  Sum_probs=161.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEec----CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ......++++|++++|.+...    +|.|..|++....-                       ..+.+.......      
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------   86 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------   86 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence            345677899999999998876    57899999876411                       112222222111      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                            .....+++  ++++++|+++. .+|.|.++++.. +.+..........                          
T Consensus        87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~--------------------------  132 (345)
T PF10282_consen   87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE--------------------------  132 (345)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE--------------------------
T ss_pred             ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC--------------------------
Confidence                  34566777  68899998887 589999999987 4433221100000                          


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                              ..-............++.++|++++++++  ....|.+|+++.....+.....  ..+ ......+.++|+|
T Consensus       133 --------g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~--~~~-~~G~GPRh~~f~p  201 (345)
T PF10282_consen  133 --------GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS--IKV-PPGSGPRHLAFSP  201 (345)
T ss_dssp             --------EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE--EEC-STTSSEEEEEE-T
T ss_pred             --------CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec--ccc-ccCCCCcEEEEcC
Confidence                    00000002234567899999999988886  6679999999855422211100  012 2345679999999


Q ss_pred             CCCCEEEEEe-CCCeEEEEEcc--CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368          264 IYCNLLAYSS-SRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL  338 (487)
Q Consensus       264 ~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i  338 (487)
                      ++ +++++.. .++.|.++++.  .+..  ........   .+.   .+.+ ......|.++|||++|.++.  .+.|.+
T Consensus       202 dg-~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~---~~~---~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  202 DG-KYAYVVNELSNTVSVFDYDPSDGSL--TEIQTIST---LPE---GFTG-ENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             TS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEES---CET---TSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             Cc-CEEEEecCCCCcEEEEeecccCCce--eEEEEeee---ccc---cccc-cCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            99 6666555 57899999998  3321  11111111   000   0011 23678999999999998874  389999


Q ss_pred             EeCCCCCceeee---eecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368          339 WDIRMDSTPVAT---FKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG  400 (487)
Q Consensus       339 wd~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~  400 (487)
                      |++......+..   +... ..+                +.++++|+|++|+++. .++.|.+|++.
T Consensus       272 f~~d~~~g~l~~~~~~~~~G~~P----------------r~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPTGGKFP----------------RHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEECTTTTTEEEEEEEEESSSSE----------------EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEeCCCCCc----------------cEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            999432222222   2221 112                5899999999999877 55789999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=4e-10  Score=97.76  Aligned_cols=221  Identities=11%  Similarity=0.123  Sum_probs=143.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccc--cceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                      +.++-|+|  ++++++|.++..   +|.|--|.++.  |++..+-..                                 
T Consensus        40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------------------------------   84 (346)
T COG2706          40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------------------------------   84 (346)
T ss_pred             CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc---------------------------------
Confidence            77899999  578888888753   57788887764  554332110                                 


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC-CC----CCcEEEEEE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD-DL----TEVITSAEF  261 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~----~~~v~~v~~  261 (487)
                                ...+  .+-+.+++++++++++++  ..|.|.++-++..+.....++...+.-. .|    ...+.+..+
T Consensus        85 ----------~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~  152 (346)
T COG2706          85 ----------TLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF  152 (346)
T ss_pred             ----------ccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence                      0122  223789999999999998  7899999999866554433221111111 11    112788899


Q ss_pred             ecCCCCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368          262 HPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL  338 (487)
Q Consensus       262 ~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i  338 (487)
                      .|++ +++++..- .-.|.+|++..+.+.......+..              ...-+-|.|+|++++...-.  +++|.+
T Consensus       153 tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~FHpn~k~aY~v~EL~stV~v  217 (346)
T COG2706         153 TPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVFHPNGKYAYLVNELNSTVDV  217 (346)
T ss_pred             CCCC-CEEEEeecCCceEEEEEcccCccccccccccCC--------------CCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence            9999 88887753 347999999987654322222222              35678899999999888754  499999


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  402 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~  402 (487)
                      |........+..++.+...-   .++.+....   -++.++|||++|.++.. ...|.+|.+...
T Consensus       218 ~~y~~~~g~~~~lQ~i~tlP---~dF~g~~~~---aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         218 LEYNPAVGKFEELQTIDTLP---EDFTGTNWA---AAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEEcCCCceEEEeeeeccCc---cccCCCCce---eEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            99976334444444333211   011121122   47899999999998764 247888888754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=1.3e-13  Score=121.89  Aligned_cols=253  Identities=15%  Similarity=0.185  Sum_probs=181.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .-+.+.++.+|++|+.|+..|.|-.+|..+++..                           .++..             .
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v-------------~  170 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINV-------------M  170 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeeh-------------h
Confidence            3568899999999999999999999999888652                           22222             2


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.|.++.|.  .+.++||++ ....+.|||-.+-++.++                                         
T Consensus       171 Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~GtElHCl-----------------------------------------  206 (545)
T KOG1272|consen  171 ETVRDVTFL--HNEQFFAVA-QKKYVYVYDNNGTELHCL-----------------------------------------  206 (545)
T ss_pred             hhhhhhhhh--cchHHHHhh-hhceEEEecCCCcEEeeh-----------------------------------------
Confidence            678999995  455566555 567899999876665543                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                              .....|..+.|-|..-+|+++ ..|.++.-|+.+++..-        .+....+.+..+.-+|-+ ..+-+|
T Consensus       207 --------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa--------~~~t~~G~~~vm~qNP~N-aVih~G  269 (545)
T KOG1272|consen  207 --------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA--------SIRTGAGRTDVMKQNPYN-AVIHLG  269 (545)
T ss_pred             --------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhH--------HHHccCCccchhhcCCcc-ceEEEc
Confidence                    234568889999998888888 99999999999655322        234455677888899988 899999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~  351 (487)
                      ...|+|.+|.....+.+    ..+-.             |.++|.++++.++|+|+++. -|..++|||++. ...+.++
T Consensus       270 hsnGtVSlWSP~skePL----vKiLc-------------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~-~~ql~t~  331 (545)
T KOG1272|consen  270 HSNGTVSLWSPNSKEPL----VKILC-------------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN-FYQLHTY  331 (545)
T ss_pred             CCCceEEecCCCCcchH----HHHHh-------------cCCCcceEEECCCCcEEeecccccceeEeeecc-cccccee
Confidence            99999999999887655    23333             47899999999999999985 589999999997 4444444


Q ss_pred             ec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc----eeEEEeccCCccccceEeeC
Q 011368          352 KI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       352 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~  424 (487)
                      .. +..                 ..+++|..| +|| .+....+.||.=.-...    ....-.-...+|..+.|.|-
T Consensus       332 ~tp~~a-----------------~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  332 RTPHPA-----------------SNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY  390 (545)
T ss_pred             ecCCCc-----------------ccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence            33 222                 368888554 344 45555899996432211    11111122347778888774

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=3.9e-11  Score=115.31  Aligned_cols=190  Identities=15%  Similarity=0.140  Sum_probs=122.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|+|++|+.+..+   ..|++||+.+++...+                                      
T Consensus       190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--------------------------------------  229 (417)
T TIGR02800       190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV--------------------------------------  229 (417)
T ss_pred             CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            55788889  6899999887643   4799999988764433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cC--CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ..+...+.+++|+|||+.|+..  .+  ..|++||+.++ ....        +..+........|+|+| 
T Consensus       230 ----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~~~~--------l~~~~~~~~~~~~s~dg-  289 (417)
T TIGR02800       230 ----------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-QLTR--------LTNGPGIDTEPSWSPDG-  289 (417)
T ss_pred             ----------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-CEEE--------CCCCCCCCCCEEECCCC-
Confidence                      2334456678999999987653  33  35888888743 3222        22333344567899999 


Q ss_pred             CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-C---eEEEE
Q 011368          267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M---NLKLW  339 (487)
Q Consensus       267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~---~i~iw  339 (487)
                      +.|+..+. ++  .|.++|+.+++.     ..+..             +...+..+.|+|+|++|+.+.. +   .|.+|
T Consensus       290 ~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       290 KSIAFTSDRGGSPQIYMMDADGGEV-----RRLTF-------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCE-----EEeec-------------CCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence            77776654 33  577777766542     22221             1245677899999999887643 3   78888


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEe
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSH  399 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~  399 (487)
                      |+.+ +. ...+......                ....|+|||++|+..+.++   .+++.+.
T Consensus       352 d~~~-~~-~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       352 DLDG-GG-ERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             eCCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            8875 32 2333222111                2578999999988777654   3445443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=6.3e-11  Score=114.02  Aligned_cols=212  Identities=14%  Similarity=0.121  Sum_probs=131.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCC---CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|+|+.|+..+.+   ..|.+|++.+++...+                                      
T Consensus       199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--------------------------------------  238 (430)
T PRK00178        199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--------------------------------------  238 (430)
T ss_pred             CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------------------------
Confidence            66888999  6889988876533   3688889988765433                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ....+.+...+|+|||+.|+..  .++  .|++||+.++ ....        +..+........|+|+| 
T Consensus       239 ----------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~--------lt~~~~~~~~~~~spDg-  298 (430)
T PRK00178        239 ----------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-QLSR--------VTNHPAIDTEPFWGKDG-  298 (430)
T ss_pred             ----------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-CeEE--------cccCCCCcCCeEECCCC-
Confidence                      2223344568999999988753  444  6888898843 3222        22333445667899999 


Q ss_pred             CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C--CeEEEE
Q 011368          267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLW  339 (487)
Q Consensus       267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d--~~i~iw  339 (487)
                      +.|+..+. +|  .|.++|+.+++..     .+..           .  ........|+|||++|+...  +  ..|.+|
T Consensus       299 ~~i~f~s~~~g~~~iy~~d~~~g~~~-----~lt~-----------~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        299 RTLYFTSDRGGKPQIYKVNVNGGRAE-----RVTF-----------V--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEE-----Eeec-----------C--CCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            77766654 33  5666777666421     1111           0  11234578999999998653  2  368889


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-C--cEEEEEeCCCCceeEEEeccCCcc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      |+.+ +.. ..+......                ....|+|||++|+..+.+ |  .|+++++..+  ....+..+.+.+
T Consensus       361 dl~t-g~~-~~lt~~~~~----------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~  420 (430)
T PRK00178        361 DLQR-GSV-RILTDTSLD----------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEV  420 (430)
T ss_pred             ECCC-CCE-EEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCc
Confidence            9875 432 333221111                156899999998876644 3  4666666433  233444455555


Q ss_pred             ccceEee
Q 011368          417 RKPILQA  423 (487)
Q Consensus       417 ~~~~~~~  423 (487)
                      ...+++|
T Consensus       421 ~~p~ws~  427 (430)
T PRK00178        421 REPSWSP  427 (430)
T ss_pred             CCCccCC
Confidence            6666665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=3.7e-11  Score=109.48  Aligned_cols=288  Identities=15%  Similarity=0.174  Sum_probs=188.1

Q ss_pred             cccccccccceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                      .+..+++...-+.|..  ++||+|+++ |...-.|++||+..-.++....                              
T Consensus        44 LiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERh------------------------------   91 (703)
T KOG2321|consen   44 LIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERH------------------------------   91 (703)
T ss_pred             HHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeec------------------------------
Confidence            3445555577888888  689998655 6688899999998765442210                              


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                       -....|.-.-.+.|-..++.- .|.+|-+..--  +....+      .++   ..-..++++.
T Consensus        92 -----------------lDae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~------RIP---~~GRDm~y~~  143 (703)
T KOG2321|consen   92 -----------------LDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRT------RIP---KFGRDMKYHK  143 (703)
T ss_pred             -----------------ccccceeEEEeccchhhheEeecCceeeehhhc--Ceeeee------ecC---cCCccccccC
Confidence                             011223333344443344443 77777654322  222211      011   1224566665


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~  342 (487)
                      -.+.+++. +....|.-+++++|+.+    ..|..             ..+.+++|..++-..+|++|. +|.|.+||.+
T Consensus       144 ~scDly~~-gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  144 PSCDLYLV-GSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             CCccEEEe-ecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccceEEecccCceEEEecch
Confidence            44344444 44456778899998765    44444             136899999999999999997 5999999998


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      . ...+..+..... +.   .....+....|+++.|+.||-.+++|+.+|.+.|||+++.+.....-++..-++..+.|.
T Consensus       206 ~-ksrv~~l~~~~~-v~---s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  206 D-KSRVGTLDAASS-VN---SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             h-hhhheeeecccc-cC---CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            7 665555554433 10   111222333458999999999999999999999999999877766666667788888887


Q ss_pred             eCCccccccccceeeecccceecCCC-CCccccccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368          423 AAPRARRSSLSNLTRGLYRQAHENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  481 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~~~~~w~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~  481 (487)
                      +......     +++....-.++|.. .+...........++++++-|++-++++|.++.
T Consensus       281 ~~~~q~~-----v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  281 DTDQQNK-----VVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             ccCCCce-----EEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence            7633333     55555544499932 234445556667799999999999999988665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=7.9e-12  Score=116.64  Aligned_cols=257  Identities=13%  Similarity=0.178  Sum_probs=173.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ......|++|+....|+|+|+.||.+++-.+.+....         +...   .+..........++.||.         
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d---------~~~~---glaa~snLsmNQtLeGH~---------   71 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD---------LNKS---GLAAASNLSMNQTLEGHN---------   71 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCc---------cccc---ccccccccchhhhhccCc---------
Confidence            3446889999999999999999999999988765431         0000   112222344557799999         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         +.|.-+.|  +.+.+.|-++..+|.|.+|-+-.+.....-                                     
T Consensus        72 ---~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEM-------------------------------------  109 (1189)
T KOG2041|consen   72 ---ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEM-------------------------------------  109 (1189)
T ss_pred             ---ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHH-------------------------------------
Confidence               99999999  566778888889999999998877543210                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                              ......+-|.+++|+.||+.|+.. .||.|.+=.++ +.+.+..      .+++.  ....+.|+++. ..+
T Consensus       110 --------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg~--~l~hv~ws~D~-~~~  171 (1189)
T KOG2041|consen  110 --------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKGQ--LLAHVLWSEDL-EQA  171 (1189)
T ss_pred             --------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcchh--eccceeecccH-HHH
Confidence                    013456778999999999999999 99999887777 4433321      12221  23578899998 888


Q ss_pred             EEEeCCCeEEEEEccCCcccccccee-ecccccccCccccccccccceeEEEEc--------CCCCEEEEEeC-CeEEEE
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFA--------NDGQHLLSRDY-MNLKLW  339 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~v~~s--------~~~~~l~s~~d-~~i~iw  339 (487)
                      +.+-.+|.+.+||....-...-.... ..+       ...+......|..+.|.        ||...|+.+-+ |.+.|.
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNG-------TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEee-------eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            88889999999998764321100011 111       00111112235555553        57778888854 888887


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      .-..+..++..-.+..                 +....|+++|..||.++.+.
T Consensus       245 R~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  245 RSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             hhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcc
Confidence            7665455554333322                 25899999999999998763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4.8e-11  Score=114.31  Aligned_cols=212  Identities=15%  Similarity=0.159  Sum_probs=127.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeC-CC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN-DK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|||+.|+..+. ++  .|.+||+.+++...+                                      
T Consensus       218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------------------------  257 (448)
T PRK04792        218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------------------------  257 (448)
T ss_pred             CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------------------------
Confidence            66888999  688998887653 33  588888887764432                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe--EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ..........+|+|||+.|+..  .++.  |+++|+.+ +....        +..+.......+|+|+| 
T Consensus       258 ----------t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~~~~--------lt~~~~~~~~p~wSpDG-  317 (448)
T PRK04792        258 ----------TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KALTR--------ITRHRAIDTEPSWHPDG-  317 (448)
T ss_pred             ----------cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CCeEE--------CccCCCCccceEECCCC-
Confidence                      1112233467899999988764  5664  77778773 33222        22334455678999999 


Q ss_pred             CEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-C--eEEEE
Q 011368          267 NLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M--NLKLW  339 (487)
Q Consensus       267 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~--~i~iw  339 (487)
                      +.|+..+. ++  .|.++|+.+++...   ..+.+               .......|+|||++|+..+ + +  .|.++
T Consensus       318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~~g---------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        318 KSLIFTSERGGKPQIYRVNLASGKVSR---LTFEG---------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEEE---EecCC---------------CCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            77766554 44  46666776654210   11222               1234568999999988653 2 4  56667


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-Cc--EEEEEeCCCCceeEEEeccCCcc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NL--LRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      |+.+ +.. ..+......                ....|+|||++|+..+.+ |.  +++++.. + .....+..+.+.+
T Consensus       380 dl~~-g~~-~~lt~~~~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~  439 (448)
T PRK04792        380 DLET-GAM-QVLTSTRLD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEV  439 (448)
T ss_pred             ECCC-CCe-EEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCc
Confidence            7765 332 333222110                146899999988766543 33  6667763 3 3344455555555


Q ss_pred             ccceEee
Q 011368          417 RKPILQA  423 (487)
Q Consensus       417 ~~~~~~~  423 (487)
                      ...+++|
T Consensus       440 ~~p~Wsp  446 (448)
T PRK04792        440 KSPAWSP  446 (448)
T ss_pred             CCCccCC
Confidence            6666665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=2.4e-12  Score=109.91  Aligned_cols=293  Identities=14%  Similarity=0.137  Sum_probs=166.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccce-e-EeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-K-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      +-|.+|.|  ...|.+|++|..+|.|.++.-..... . .....        +..+.++             +..     
T Consensus        26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~--------fqshepE-------------FDY-----   77 (433)
T KOG1354|consen   26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTE--------FQSHEPE-------------FDY-----   77 (433)
T ss_pred             cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeee--------eeccCcc-------------cch-----
Confidence            56899999  57899999999999999986543221 0 00000        0000000             000     


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCC---EEEEecCCeEEEEEccCCCcee-----------------EEe---------
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF-----------------NIV---------  242 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~---~l~s~~d~~i~iwd~~~~~~~~-----------------~~~---------  242 (487)
                          ++  ...-...|+.+.|.++++   +|+++.|.+|++|.+...+...                 ++.         
T Consensus        78 ----Lk--SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v  151 (433)
T KOG1354|consen   78 ----LK--SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV  151 (433)
T ss_pred             ----hh--hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee
Confidence                00  012345688899987643   3444499999999887433221                 000         


Q ss_pred             ecCCCC--CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEE
Q 011368          243 DMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  320 (487)
Q Consensus       243 ~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~  320 (487)
                      ...++.  -.+|.-.|.++.++.++ ..++++ .|=.|.+|+++-.....   .+...      .+..+..-..-|++..
T Consensus       152 ea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDI------KP~nmEeLteVITsaE  220 (433)
T KOG1354|consen  152 EASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDI------KPANMEELTEVITSAE  220 (433)
T ss_pred             eeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEc------cccCHHHHHHHHhhhc
Confidence            000111  13577789999999997 666654 56789999987543221   11111      1112222345688899


Q ss_pred             EcCCCCEEE--EEeCCeEEEEeCCCCCceeee---eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368          321 FANDGQHLL--SRDYMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  395 (487)
Q Consensus       321 ~s~~~~~l~--s~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~  395 (487)
                      |+|....++  +.+.|+|++-|++...-+...   +.....+...   -+-.+.+..|.++.|+++|+||++-.. -+|+
T Consensus       221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r---sffseiIsSISDvKFs~sGryilsRDy-ltvk  296 (433)
T KOG1354|consen  221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR---SFFSEIISSISDVKFSHSGRYILSRDY-LTVK  296 (433)
T ss_pred             cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch---hhHHHHhhhhhceEEccCCcEEEEecc-ceeE
Confidence            999754333  345599999999852222111   1111111100   000112223468999999999998766 4899


Q ss_pred             EEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEE
Q 011368          396 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA  475 (487)
Q Consensus       396 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la  475 (487)
                      +||++.......+.+.|...-..+......|.-+                               .=..++|+-++.+++
T Consensus       297 ~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If-------------------------------dKFec~~sg~~~~v~  345 (433)
T KOG1354|consen  297 LWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF-------------------------------DKFECSWSGNDSYVM  345 (433)
T ss_pred             EEeccccCCcceEEeehHhHHHHHHHHhhccchh-------------------------------heeEEEEcCCcceEe
Confidence            9999876566666666654322222221111111                               113678999999999


Q ss_pred             EecCCe-EEEEe
Q 011368          476 CANGNS-LFFHY  486 (487)
Q Consensus       476 ~~s~~~-~~i~~  486 (487)
                      +|+.++ +.+|.
T Consensus       346 TGsy~n~frvf~  357 (433)
T KOG1354|consen  346 TGSYNNVFRVFN  357 (433)
T ss_pred             cccccceEEEec
Confidence            999666 44553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=7.1e-11  Score=113.54  Aligned_cols=187  Identities=14%  Similarity=0.100  Sum_probs=116.8

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cC---CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE-EeCC
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSR  275 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~d  275 (487)
                      ..+...+...+|+|||+.|+.+ .+   ..|++||+.++. ...+        ..+...+.+++|+|+| +.|+. .+.+
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~--------~~~~~~~~~~~~spDg-~~l~~~~~~~  255 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKV--------ASFPGMNGAPAFSPDG-SKLAVSLSKD  255 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEe--------ecCCCCccceEECCCC-CEEEEEECCC
Confidence            3455668888999999999886 32   479999998543 2221        2233456678999999 76654 4444


Q ss_pred             C--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC----CeEEEEeCCCCCceee
Q 011368          276 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA  349 (487)
Q Consensus       276 g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d----~~i~iwd~~~~~~~~~  349 (487)
                      +  .|.+||+.++..     ..+..+             ........|+|||+.|+..++    ..|+++|+.. +.. .
T Consensus       256 ~~~~i~~~d~~~~~~-----~~l~~~-------------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~~-~  315 (417)
T TIGR02800       256 GNPDIYVMDLDGKQL-----TRLTNG-------------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GEV-R  315 (417)
T ss_pred             CCccEEEEECCCCCE-----EECCCC-------------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CCE-E
Confidence            4  588888887642     222221             223456789999998876543    3688888764 332 2


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+..+....               ..+.|+|||++|+.++.++   .|.+||+.++...  .+... .......++|  +
T Consensus       316 ~l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~~-~~~~~p~~sp--d  375 (417)
T TIGR02800       316 RLTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTDT-GLDESPSFAP--N  375 (417)
T ss_pred             EeecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccCC-CCCCCceECC--C
Confidence            333222211               3789999999999888775   7899998875332  22222 2234456666  5


Q ss_pred             cccccccceeeecccc
Q 011368          427 ARRSSLSNLTRGLYRQ  442 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~  442 (487)
                      ++.     |+....++
T Consensus       376 g~~-----l~~~~~~~  386 (417)
T TIGR02800       376 GRM-----ILYATTRG  386 (417)
T ss_pred             CCE-----EEEEEeCC
Confidence            554     55544443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1e-10  Score=112.49  Aligned_cols=206  Identities=16%  Similarity=0.166  Sum_probs=127.4

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...+.+.+...+|+|||+.|+..+.+   ..|.+|++.+++..                         .+..+.      
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------------~l~~~~------  242 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------------QITNFE------  242 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-------------------------EccCCC------
Confidence            34567788999999999999876643   36888898877531                         111122      


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEE-EeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                               +.+...+|  +|+|+.|+. ...++  .|.+||+.++....+                             
T Consensus       243 ---------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l-----------------------------  282 (430)
T PRK00178        243 ---------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV-----------------------------  282 (430)
T ss_pred             ---------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc-----------------------------
Confidence                     33456888  678888774 44444  577888887764432                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                                         ..+........|+|||+.|+..  .++  .|+++++.++ ....+.      ..+  ....
T Consensus       283 -------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~~~~lt------~~~--~~~~  334 (430)
T PRK00178        283 -------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-RAERVT------FVG--NYNA  334 (430)
T ss_pred             -------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-CEEEee------cCC--CCcc
Confidence                               3334445667899999987664  443  5777777633 332221      111  2234


Q ss_pred             EEEEecCCCCEEEEEeCC-C--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368          258 SAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      ...|+|+| +.|+..+.+ +  .|.++|+.+++.     +.+..              ........|+|||++++... +
T Consensus       335 ~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        335 RPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceECCCCCEEEEEEec
Confidence            56899999 888777653 3  578889887653     22222              01122458999999988653 2


Q ss_pred             ---CeEEEEeCCCCCceeeeeecc
Q 011368          334 ---MNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       334 ---~~i~iwd~~~~~~~~~~~~~~  354 (487)
                         ..|.++++.  +.....+..+
T Consensus       395 ~g~~~l~~~~~~--g~~~~~l~~~  416 (430)
T PRK00178        395 QGRGVLMLVSIN--GRVRLPLPTA  416 (430)
T ss_pred             CCceEEEEEECC--CCceEECcCC
Confidence               456666764  4444444433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=3.4e-11  Score=117.23  Aligned_cols=149  Identities=12%  Similarity=0.095  Sum_probs=121.4

Q ss_pred             EeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368          211 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       211 ~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      -++++.-++++| .-+.|.+|+.......        ..+.+|.+.|.++.|+-+| .++++.|+|+.+|+|++++.+..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence            347778889999 8999999998833332        2468999999999999999 99999999999999999997643


Q ss_pred             cccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCC
Q 011368          290 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND  368 (487)
Q Consensus       290 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (487)
                      .       .         ...+|...++.+.|.|+  .++++ .|.+.++|+..  +..+..+..|...           
T Consensus       211 ~-------~---------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~-----------  259 (967)
T KOG0974|consen  211 G-------C---------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK-----------  259 (967)
T ss_pred             C-------c---------ccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-----------
Confidence            1       1         13567999999999998  66665 67999999775  5666677777653           


Q ss_pred             CcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          369 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       369 ~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                         .++.++.+++...++|++.|+.+++|++...
T Consensus       260 ---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  260 ---GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ---ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence               2368999999999999999999999999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=9.9e-11  Score=112.19  Aligned_cols=206  Identities=14%  Similarity=0.140  Sum_probs=123.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEec-CC--cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..+...+.+..|||||+.|+..+. ++  .|.+||+.+++.                         +.+..+.+      
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-------------------------~~lt~~~g------  262 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-------------------------EKVTSFPG------  262 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------EEecCCCC------
Confidence            345567889999999999987653 33  577888776642                         11222222      


Q ss_pred             cccccccccceeEEEEEecCCCcEEEE-EeCCCc--EEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                               .....+|  +|||+.|+. .+.++.  |.++|+.+++...+                              
T Consensus       263 ---------~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------------------------------  301 (448)
T PRK04792        263 ---------INGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------------------------------  301 (448)
T ss_pred             ---------CcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC------------------------------
Confidence                     2346788  688987765 455665  66777777664432                              


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  258 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  258 (487)
                                        ..+.......+|+|||+.|+..  .++  .|+++|+.+ +....+      +..+.  ....
T Consensus       302 ------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~~~~L------t~~g~--~~~~  354 (448)
T PRK04792        302 ------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GKVSRL------TFEGE--QNLG  354 (448)
T ss_pred             ------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCEEEE------ecCCC--CCcC
Confidence                              3344456678999999988765  444  455566663 333222      11222  2245


Q ss_pred             EEEecCCCCEEEEEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C
Q 011368          259 AEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y  333 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d  333 (487)
                      .+|+|+| +.|+..+. ++  .|.++|+.+++.     ..+..              ........|+|||+.|+...  +
T Consensus       355 ~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~--------------~~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        355 GSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTS--------------TRLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             eeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccC--------------CCCCCCceECCCCCEEEEEEecC
Confidence            6899999 77777654 44  455567776642     22222              01112347999999887643  2


Q ss_pred             --CeEEEEeCCCCCceeeeeeccc
Q 011368          334 --MNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       334 --~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                        ..+++++..  +.....+..+.
T Consensus       415 g~~~l~~~~~~--G~~~~~l~~~~  436 (448)
T PRK04792        415 GKQVLAAVSID--GRFKARLPAGQ  436 (448)
T ss_pred             CceEEEEEECC--CCceEECcCCC
Confidence              347777763  55555565443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=1.4e-09  Score=98.17  Aligned_cols=339  Identities=9%  Similarity=0.098  Sum_probs=193.9

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .-++..++|||.|.+|++.... .|.+|.-.....                           +..+..            
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~---------------------------l~~~~~------------   71 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAK---------------------------LVRFRH------------   71 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccchhh---------------------------eeeeec------------
Confidence            4578999999999999988765 488998654432                           233332            


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCC---------------cEEEEEccccceeEeeecCCCCcee--eeeccccccccc
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDK---------------TIKLWKVRDQKVKKIKEMDHFPFVS--SENTLLAEKNFM  174 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~---------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  174 (487)
                        ..|..+.|  +|++++|.+-+...               .+.+||+.++.+.........+.+.  -+.|.-.+....
T Consensus        72 --~~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A  147 (561)
T COG5354          72 --PDVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA  147 (561)
T ss_pred             --CCceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence              44788888  67889998865433               4999999999877665443333111  122222222222


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCC--CEEEE-----e-cCCeEEEEEccCCCceeEEeecCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDC--ETFVS-----A-DDLRINLWNLEISDQCFNIVDMKP  246 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s-----~-~d~~i~iwd~~~~~~~~~~~~~~~  246 (487)
                      ......-..+....... ..+..   .-....|...+|+|.+  ..|+.     . ..+.+++|.+..+.... ..    
T Consensus       148 Rvv~~sl~i~e~t~n~~-~~p~~---~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~-tk----  218 (561)
T COG5354         148 RVVGSSLYIHEITDNIE-EHPFK---NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV-TK----  218 (561)
T ss_pred             hhccCeEEEEecCCccc-cCchh---hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee-ee----
Confidence            22111111111000000 01111   1113568888899853  34444     3 57889999988443322 11    


Q ss_pred             CCCCCCCCcEEEEEEecCCCCEEEEEeC-----------CCeEEEEEccCCccccccceeecccccccCccccccccccc
Q 011368          247 SNMDDLTEVITSAEFHPIYCNLLAYSSS-----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  315 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  315 (487)
                       ++..-  .-..+.|++.| ++|++--.           +..+.|++++....     +...             +..++
T Consensus       219 -~lfk~--~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----~V~~-------------~~~~p  276 (561)
T COG5354         219 -NLFKV--SGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-----PVEK-------------DLKDP  276 (561)
T ss_pred             -eeEee--cccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc-----ceec-------------ccccc
Confidence             11111  12567899988 76654311           24577777774332     1110             11478


Q ss_pred             eeEEEEcCCCCEEEEEe---CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-
Q 011368          316 ISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-  391 (487)
Q Consensus       316 v~~v~~s~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-  391 (487)
                      |...+|.|.++.+++.+   .-.+.++|++.  .....+.....                 ..+.|||.+++++.++-| 
T Consensus       277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~Pe~~r-----------------NT~~fsp~~r~il~agF~n  337 (561)
T COG5354         277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYFPEQKR-----------------NTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             ceeeeecccCCceeEEecccccceeeccccc--ceEEecCCccc-----------------ccccccCcccEEEEecCCc
Confidence            99999999998877653   38899999974  44444433322                 378999999999998876 


Q ss_pred             --CcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeee---c---ccce-ecCCCCCccccccccCCCe
Q 011368          392 --NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG---L---YRQA-HENSSSGHHELSYNLSSKL  462 (487)
Q Consensus       392 --g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g---~---~~~~-~~w~~~~~~~~~~~~~~~v  462 (487)
                        |.|-+||....-.....+.+...  .-+.|+|  ++++     +.+.   .   .|.. ++|........      ..
T Consensus       338 l~gni~i~~~~~rf~~~~~~~~~n~--s~~~wsp--d~qF-----~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el  402 (561)
T COG5354         338 LQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSP--DGQF-----YDTDTTSEKLRVDNSIKLWDVYGAKVF------EL  402 (561)
T ss_pred             cccceEEeccCCceEEEEEeecCCc--eEeeccC--CceE-----EEecCCCcccccCcceEEEEecCchhh------hh
Confidence              78999998866333324443322  1233444  3433     2221   1   1233 55533322211      66


Q ss_pred             EEEEEcCCCCEEEEecC
Q 011368          463 LHLAWHPTTNLIACANG  479 (487)
Q Consensus       463 ~~~~~spd~~~la~~s~  479 (487)
                      +.+.|.|.|++..+.|.
T Consensus       403 ~~~~W~p~~~~~ttsSs  419 (561)
T COG5354         403 TNITWDPSGQYVTTSSS  419 (561)
T ss_pred             hhccccCCcccceeecc
Confidence            67788888777766664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.2e-09  Score=97.88  Aligned_cols=312  Identities=16%  Similarity=0.222  Sum_probs=186.1

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      =+-+.|||-|.||++--..| |.+|--..-..                           +.-| .|             .
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~RF-~H-------------p  250 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQRF-YH-------------P  250 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHhc-cC-------------C
Confidence            45789999999999987765 78996433221                           1111 23             4


Q ss_pred             ceeEEEEEecCCCcEEEEEeC-----------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          115 KINRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                      .|.-+.|  +|+.++|+|-+.           ...++|||+.+|..+......                           
T Consensus       251 ~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~---------------------------  301 (698)
T KOG2314|consen  251 GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI---------------------------  301 (698)
T ss_pred             Cceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc---------------------------
Confidence            5888999  678899998541           257999999999876542110                           


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                       ......-.-..||.|++++|.-...+|.||+..+    +.+++.+..    ....|....|+|
T Consensus       302 -----------------~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl----ki~gIr~FswsP  356 (698)
T KOG2314|consen  302 -----------------KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL----KISGIRDFSWSP  356 (698)
T ss_pred             -----------------CCCccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc----CCccccCcccCC
Confidence                             1111112345799999999887557899998763    333333322    234588899999


Q ss_pred             CCCCEEEEEeCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-----
Q 011368          264 IYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----  333 (487)
Q Consensus       264 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-----  333 (487)
                      .+ ++||.=...     ..+.|-.+.+++.+    ++-..|             .-.=..+.|-.+|.+|+.--|     
T Consensus       357 ~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nlf-------------nVsDckLhWQk~gdyLcvkvdR~tK~  418 (698)
T KOG2314|consen  357 TS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNLF-------------NVSDCKLHWQKSGDYLCVKVDRHTKS  418 (698)
T ss_pred             Cc-ceEEEEcccccCCcceEEEEecCcccee----eeccce-------------eeeccEEEeccCCcEEEEEEEeeccc
Confidence            98 877764431     24556655555433    222221             112234567788999885321     


Q ss_pred             ------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---CcEEEEEeCC-CC
Q 011368          334 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGV-GS  403 (487)
Q Consensus       334 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g~i~iwd~~~-~~  403 (487)
                            ..+.|+.++...-++..+......                ...+|-|.|..+++-+.+   .++.+|.+++ ..
T Consensus       419 ~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~  482 (698)
T KOG2314|consen  419 KVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK  482 (698)
T ss_pred             cccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence                  245666666434455555444332                489999999887765443   6799999984 32


Q ss_pred             ce--eEEEeccCCccccceEeeCCccccccccceeeec---ccce-ecCCCC--CccccccccCCCeEEEEEcCCCCEEE
Q 011368          404 AG--GITVEAGKNENRKPILQAAPRARRSSLSNLTRGL---YRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIA  475 (487)
Q Consensus       404 ~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~---~~~~-~~w~~~--~~~~~~~~~~~~v~~~~~spd~~~la  475 (487)
                      ..  +..+.  ....+.+.++|  .|++     ++.+.   +.+. ...++.  ........-.-..+.+-|.|.|++++
T Consensus       483 ~~~lVk~~d--k~~~N~vfwsP--kG~f-----vvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvv  553 (698)
T KOG2314|consen  483 KPSLVKELD--KKFANTVFWSP--KGRF-----VVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVV  553 (698)
T ss_pred             chhhhhhhc--ccccceEEEcC--CCcE-----EEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEE
Confidence            22  22332  24556778888  6776     33332   3333 333222  11111111122346788999999999


Q ss_pred             Eec-------CCeEEEE
Q 011368          476 CAN-------GNSLFFH  485 (487)
Q Consensus       476 ~~s-------~~~~~i~  485 (487)
                      +++       +++..||
T Consensus       554 T~ss~wrhk~d~GYri~  570 (698)
T KOG2314|consen  554 TSSSSWRHKVDNGYRIF  570 (698)
T ss_pred             EeeehhhhccccceEEE
Confidence            877       4555555

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=6e-10  Score=105.95  Aligned_cols=115  Identities=15%  Similarity=0.105  Sum_probs=73.3

Q ss_pred             ceeEEEeCCCCCEEEEe--cCCeEEEEE--ccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC---CeE
Q 011368          206 NINSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFV  278 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i  278 (487)
                      .....+|+|||+.|+..  .++...+|.  +...+.....       +..+...+....|+|+| +.|+..+.+   ..|
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I  353 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQI  353 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEE
Confidence            34577999999987765  566555554  4322221221       22333456788999999 888776543   468


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e---CCeEEEEeCCCCCce
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---YMNLKLWDIRMDSTP  347 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~---d~~i~iwd~~~~~~~  347 (487)
                      .+||+.+++.     +.+..             ....+....|+|||++|+.. .   ...|+++|+.. ++.
T Consensus       354 ~v~dl~~g~~-----~~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~  407 (428)
T PRK01029        354 CVYDLATGRD-----YQLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKT  407 (428)
T ss_pred             EEEECCCCCe-----EEccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE
Confidence            9999988763     22222             01345678999999988743 2   26788889875 443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.35  E-value=5e-09  Score=107.77  Aligned_cols=355  Identities=13%  Similarity=0.093  Sum_probs=192.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .+.|.++.+-++...++.+..+|.|.+...+....                     ....+.+..+              
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~---------------------~~~~E~VG~v--------------  119 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD---------------------EDEIEIVGSV--------------  119 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC---------------------CceeEEEEEE--------------
Confidence            46799999999999999999999999883221100                     0011222222              


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC----CCCceeeeeccccccccccccCCCCcceeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD----HFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                       +..|.+++|  +||++.|+.++.++++.+..-.- +........    .......+.+-..+..+-+..+.........
T Consensus       120 -d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~  195 (928)
T PF04762_consen  120 -DSGILAASW--SPDEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD  195 (928)
T ss_pred             -cCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence             278999999  68999999999999998875332 222111111    0111112222222222222222211100000


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c---C---CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D---D---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                      ....  +.-...+. ..+.-..|+|-.||+++|++ -   .   ..+++|+.+  +....+       .+.-.+--.+++
T Consensus       196 p~~~--~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~st-------SE~v~gLe~~l~  263 (928)
T PF04762_consen  196 PTVP--KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQST-------SEPVDGLEGALS  263 (928)
T ss_pred             CCCC--ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEec-------cccCCCccCCcc
Confidence            0000  00000113 55667789999999999985 3   2   578999987  332221       222223335789


Q ss_pred             EecCCCCEEEEEeC---CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEE
Q 011368          261 FHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  337 (487)
Q Consensus       261 ~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~  337 (487)
                      |.|.| ++||+...   ...|.+|.-+ |..-    ..|...         +......|..+.|++|+..||..-...|.
T Consensus       264 WrPsG-~lIA~~q~~~~~~~VvFfErN-GLrh----geF~l~---------~~~~~~~v~~l~Wn~ds~iLAv~~~~~vq  328 (928)
T PF04762_consen  264 WRPSG-NLIASSQRLPDRHDVVFFERN-GLRH----GEFTLR---------FDPEEEKVIELAWNSDSEILAVWLEDRVQ  328 (928)
T ss_pred             CCCCC-CEEEEEEEcCCCcEEEEEecC-CcEe----eeEecC---------CCCCCceeeEEEECCCCCEEEEEecCCce
Confidence            99999 99998865   3356666533 3211    122220         01124678999999999999987555699


Q ss_pred             EEeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368          338 LWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       338 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      +|-..... -....+......           ..   ..+.|+|. ...|...+.+|.+..++..-.-.   .-.+.   
T Consensus       329 LWt~~NYHWYLKqei~~~~~~-----------~~---~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~---~s~~~---  388 (928)
T PF04762_consen  329 LWTRSNYHWYLKQEIRFSSSE-----------SV---NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS---RSPGS---  388 (928)
T ss_pred             EEEeeCCEEEEEEEEEccCCC-----------CC---CceEECCCCCCEEEEEecCCcEEEEEEEEEEE---ecCCC---
Confidence            99886521 122233322221           01   25899994 45577777777777666542100   00000   


Q ss_pred             cccceEeeCCccccccccceeeecccce----ecCCCC----CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGLYRQA----HENSSS----GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~----~~w~~~----~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                            .|...+        .++.-||.    ..++..    -+......+..+|.+++|++++..+|+-..|+ +.+|.
T Consensus       389 ------~~~D~g--------~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  389 ------SPNDNG--------TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             ------CccCce--------EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                  000000        11111111    111111    01113345678999999999998777666555 87775

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=9.3e-10  Score=92.39  Aligned_cols=159  Identities=11%  Similarity=0.003  Sum_probs=114.9

Q ss_pred             eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011368          207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  285 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~  285 (487)
                      ..++.|++.+..++++ .+|.+.+-+.. .....+     .+++++|..+++...|+...++++.+|++|+.+..||+|.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~-----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEK-----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeee-----cccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4678889989999999 99999855544 121111     2467889999999999988889999999999999999994


Q ss_pred             CccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEeC-CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368          286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      .+.     ..|..          ...|...|.+|.-+| .+.++++|++ ..|++||.++.++++..-+...        
T Consensus       198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G--------  254 (339)
T KOG0280|consen  198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG--------  254 (339)
T ss_pred             Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc--------
Confidence            321     23332          134577899998885 5779999985 9999999997677776554332        


Q ss_pred             ccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeCCCC
Q 011368          364 LYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                              +|+.+.++|.  ++.|+++-.+ -.+|-+.+.+.
T Consensus       255 --------GVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~  287 (339)
T KOG0280|consen  255 --------GVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKV  287 (339)
T ss_pred             --------ceEEEEecchhhhHHHHHHHhc-CceEEEecccc
Confidence                    3479999984  3345544444 46777777653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.34  E-value=5.3e-10  Score=102.71  Aligned_cols=194  Identities=16%  Similarity=0.278  Sum_probs=144.2

Q ss_pred             cCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEE
Q 011368           41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  120 (487)
Q Consensus        41 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~  120 (487)
                      .|...|+|....||.++||+...++..                     .++.+...+.+-.               .+..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~---------------------~e~~p~~~~s~t~---------------~~~~   45 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQ---------------------QEFAPIASLSGTC---------------TYTK   45 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceee---------------------eeeccchhccCcc---------------eeEE
Confidence            355689999999999999999887652                     2233333333222               2222


Q ss_pred             EE------e------------cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          121 WC------A------------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       121 ~~------~------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                      |.      |            +.+-..++-|...|.|.+|++..+++.....                            
T Consensus        46 w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s----------------------------   97 (541)
T KOG4547|consen   46 WGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS----------------------------   97 (541)
T ss_pred             EEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEe----------------------------
Confidence            21      1            2244567778899999999999988765421                            


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                       -.+|.++|+++.++.+-..|.++ .|+.+..|+.. ..+...+       ..+....+.+++.
T Consensus        98 -----------------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   98 -----------------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCI  152 (541)
T ss_pred             -----------------cCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEE
Confidence                             26899999999999999999999 99999999998 4555543       3556677899999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-----CCEEEEEeC--C
Q 011368          262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY--M  334 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~s~~d--~  334 (487)
                      +|+| .++++++  +.|++||+++++.+    ..|.+             |.+.|+++.|.-+     |.+++++..  .
T Consensus       153 s~D~-~~l~~as--~~ik~~~~~~kevv----~~ftg-------------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r  212 (541)
T KOG4547|consen  153 SPDG-KILLTAS--RQIKVLDIETKEVV----ITFTG-------------HGSPVRTLSFTTLIDGIIGKYVLSSAAAER  212 (541)
T ss_pred             cCCC-CEEEecc--ceEEEEEccCceEE----EEecC-------------CCcceEEEEEEEeccccccceeeecccccc
Confidence            9999 8998876  47999999998866    67776             4789999999876     788887643  6


Q ss_pred             eEEEEeCCC
Q 011368          335 NLKLWDIRM  343 (487)
Q Consensus       335 ~i~iwd~~~  343 (487)
                      .+.+|-++.
T Consensus       213 ~i~~w~v~~  221 (541)
T KOG4547|consen  213 GITVWVVEK  221 (541)
T ss_pred             ceeEEEEEc
Confidence            677776653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.8e-09  Score=102.68  Aligned_cols=177  Identities=16%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             CCceeEEEeCCCCCEEEEe--cCC----eEEEEEccCC--CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-C
Q 011368          204 DFNINSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S  274 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~  274 (487)
                      .+.....+|+|||+.|+..  .+|    .+.+|++..+  +....+.       ..........+|+|+| +.|+..+ .
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG-~~Laf~s~~  301 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDG-TRLVFVSNK  301 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCC-CEEEEEECC
Confidence            3344567999999988875  233    3444666532  2222221       1222334567999999 7777665 4


Q ss_pred             CCeEEEEEc--cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEEeCCCCCcee
Q 011368          275 RGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPV  348 (487)
Q Consensus       275 dg~i~iwd~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iwd~~~~~~~~  348 (487)
                      +|...||.+  ......   .+.+..             +...+....|+|||+.|+... +   ..|.+||+.+ ++..
T Consensus       302 ~g~~~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~~  364 (428)
T PRK01029        302 DGRPRIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRDY  364 (428)
T ss_pred             CCCceEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCeE
Confidence            665556643  221100   122222             124567889999999988653 2   5799999976 4433


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC---CCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       .+.......               ....|+|||++|+..+.   ...|+++|+.+++..  .+......+...+++|
T Consensus       365 -~Lt~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~--~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        365 -QLTTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR--KIVIGSGEKRFPSWGA  424 (428)
T ss_pred             -EccCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCcccCceecC
Confidence             332221111               37899999998875433   356888898876432  2223334455666665

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=2e-11  Score=124.79  Aligned_cols=219  Identities=19%  Similarity=0.299  Sum_probs=159.2

Q ss_pred             ccchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCC
Q 011368            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (487)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (487)
                      +..++|--....++....-...+-..|.++.=+|...+.+||+.||.|++|....++..                     
T Consensus      2185 ~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--------------------- 2243 (2439)
T KOG1064|consen 2185 PSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--------------------- 2243 (2439)
T ss_pred             cccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------------
Confidence            44566655544444444445556778999999999999999999999999998766542                     


Q ss_pred             CcceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccc
Q 011368           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (487)
Q Consensus        89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (487)
                            ..++--.           ...|+.++|  +..|+.+..+..||.+.+|.+...-..                  
T Consensus      2244 ------~~~rt~g-----------~s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~~------------------ 2286 (2439)
T KOG1064|consen 2244 ------VCFRTAG-----------NSRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPYT------------------ 2286 (2439)
T ss_pred             ------EEeeccC-----------cchhhhhhh--cccCCceeeeccCCceeecccCCccee------------------
Confidence                  2222211           167899999  478889999999999999998722111                  


Q ss_pred             cccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCceeEEeec
Q 011368          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDM  244 (487)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~  244 (487)
                                                   . ...|.....+..|-.  ..++++    +++.+.+||........-+   
T Consensus      2287 -----------------------------s-~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--- 2331 (2439)
T KOG1064|consen 2287 -----------------------------S-WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--- 2331 (2439)
T ss_pred             -----------------------------c-cccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee---
Confidence                                         1 267888888888864  566663    5789999998744432211   


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                          -..|.+.++++++.|.. ++|++|+.+|.|++||+++.++.    +.|+.                      +. .
T Consensus      2332 ----~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~----------------------~~-~ 2379 (2439)
T KOG1064|consen 2332 ----HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA----------------------LD-T 2379 (2439)
T ss_pred             ----eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh----------------------hh-h
Confidence                15799999999999999 99999999999999999987654    22222                      33 4


Q ss_pred             CCEEEEEeC-CeEEEEeCCCCCceeeeeec
Q 011368          325 GQHLLSRDY-MNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       325 ~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~  353 (487)
                      ..++++|+. |.++||++.. ...+..+..
T Consensus      2380 ~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2380 REYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred             hheeeccCcccceEEEEccc-cchhhcCch
Confidence            568888864 9999999976 556665543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.1e-09  Score=100.08  Aligned_cols=233  Identities=14%  Similarity=0.129  Sum_probs=153.6

Q ss_pred             EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      +++.|++|..+.|-- ..+.+.+|+..+.+..                            .-+-|.            ..
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~----------------------------~~kl~~------------~~  167 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI----------------------------QHKLSV------------SG  167 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccce----------------------------eeeeec------------cc
Confidence            688899887654322 3467999997654321                            111233            77


Q ss_pred             eeEEEEEecCCCcEEEE-----EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          116 INRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      |+.+.++|.|.-..+++     .+.-..|+||...........                                     
T Consensus       168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-------------------------------------  210 (566)
T KOG2315|consen  168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-------------------------------------  210 (566)
T ss_pred             eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------------------------------------
Confidence            99999987766666666     345568999988743221110                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEE---Ee-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFV---SA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~---s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                          ..+.++   ...=..+.|++-|+-|.   +. -|         .++++.+++ +..+..-        -...++|.
T Consensus       211 ----a~ksFF---kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~--------L~k~GPVh  274 (566)
T KOG2315|consen  211 ----ANKSFF---KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP--------LLKEGPVH  274 (566)
T ss_pred             ----hhcccc---ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe--------cCCCCCce
Confidence                111111   12223567777655332   22 33         357777777 3322211        12468899


Q ss_pred             EEEEecCCCCEEEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C
Q 011368          258 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y  333 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d  333 (487)
                      ++.|+|++ ..++++.  .-..+.|||++-.-.     ..+.               +++=+++-|+|.|++|+.++  .
T Consensus       275 dv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-----~df~---------------egpRN~~~fnp~g~ii~lAGFGN  333 (566)
T KOG2315|consen  275 DVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-----FDFP---------------EGPRNTAFFNPHGNIILLAGFGN  333 (566)
T ss_pred             EEEECCCC-CEEEEEEecccceEEEEcCCCCEe-----EeCC---------------CCCccceEECCCCCEEEEeecCC
Confidence            99999999 6665543  467899999986421     2222               35678899999999988653  3


Q ss_pred             --CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEEEEEeCC
Q 011368          334 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGV  401 (487)
Q Consensus       334 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~iwd~~~  401 (487)
                        |.|-|||+.+ .+.+..+.....                 +-+.|+|||++++|++.      |+.++||+...
T Consensus       334 L~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  334 LPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             CCCceEEEeccc-hhhccccccCCc-----------------eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence              9999999987 888888877665                 36899999999998876      68899999863

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=6.8e-09  Score=94.72  Aligned_cols=289  Identities=14%  Similarity=0.179  Sum_probs=163.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEec-----------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEee
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE   96 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (487)
                      .+.|.+ |.-+.|||+.+||+|-+.           ...++|||+.+|...                           +.
T Consensus       246 RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rs  297 (698)
T KOG2314|consen  246 RFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RS  297 (698)
T ss_pred             hccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cc
Confidence            344554 889999999999999652           247999999999763                           22


Q ss_pred             ecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccc
Q 011368           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (487)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (487)
                      |..-...       .  ..-.-.+|  +.|++++|--.. .+|.||+...-.+...+... -+.+..|.+.+. +.+++.
T Consensus       298 F~~~~~~-------~--~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-i~gIr~FswsP~-~~llAY  363 (698)
T KOG2314|consen  298 FPVIKSP-------Y--LKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLK-ISGIRDFSWSPT-SNLLAY  363 (698)
T ss_pred             eeccCCC-------c--cccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccC-CccccCcccCCC-cceEEE
Confidence            2221100       0  11234678  678898887766 46889887653322221111 122344444433 334443


Q ss_pred             cCCCCcceee---eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c----C------CeEEEEEccCCCceeEEe
Q 011368          177 HNPPSFAHGY---HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D----D------LRINLWNLEISDQCFNIV  242 (487)
Q Consensus       177 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~----d------~~i~iwd~~~~~~~~~~~  242 (487)
                      ..........   .......+.+++. .-+.-.=..+-|-.+|.+|+.- +    .      ..+-|+.++...-.+..+
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            3322222211   1112222222221 1111111234566678888763 1    1      124455655333333332


Q ss_pred             ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---CCeEEEEEccCCccccccceeecccccccCccccccccccceeEE
Q 011368          243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  319 (487)
Q Consensus       243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v  319 (487)
                              .....|...+|.|.| +.+++-+.   ..++++|.+++.......++.+..               ...+.+
T Consensus       443 --------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---------------~~~N~v  498 (698)
T KOG2314|consen  443 --------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---------------KFANTV  498 (698)
T ss_pred             --------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc---------------cccceE
Confidence                    344678899999999 77766554   357899988853322222333333               467889


Q ss_pred             EEcCCCCEEEEEe----CCeEEEEeCCCCCceee-eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----
Q 011368          320 KFANDGQHLLSRD----YMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----  390 (487)
Q Consensus       320 ~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----  390 (487)
                      .|+|.|++++.+.    .|.+.++|+.. ..... ....|...                +.+.|.|.|+|+++++.    
T Consensus       499 fwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a----------------t~veWDPtGRYvvT~ss~wrh  561 (698)
T KOG2314|consen  499 FWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAA----------------TEVEWDPTGRYVVTSSSSWRH  561 (698)
T ss_pred             EEcCCCcEEEEEEecccccceEEEecch-hhhhhccCcccccc----------------ccceECCCCCEEEEeeehhhh
Confidence            9999999998753    38999999864 12111 11222221                58999999999999876    


Q ss_pred             --CCcEEEEEeC
Q 011368          391 --SNLLRIFSHG  400 (487)
Q Consensus       391 --dg~i~iwd~~  400 (487)
                        |.--+||+.+
T Consensus       562 k~d~GYri~tfq  573 (698)
T KOG2314|consen  562 KVDNGYRIFTFQ  573 (698)
T ss_pred             ccccceEEEEee
Confidence              3445566665

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=9.1e-10  Score=94.42  Aligned_cols=203  Identities=11%  Similarity=0.127  Sum_probs=131.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+++++.+.++...|++|-..|++.-+.+...-.                       ...+.+....|.          
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~----------  114 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ----------  114 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh----------
Confidence            45789999999999999999999998887653321                       222345566777          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeee--cCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE--MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                        ..|..+-|.  ..-.++++.+.|..+.---.+.+....-..  .........+.       ....+............
T Consensus       115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-------~~fvGd~~gqvt~lr~~  183 (404)
T KOG1409|consen  115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-------YAFVGDHSGQITMLKLE  183 (404)
T ss_pred             --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-------EEEecccccceEEEEEe
Confidence              889999994  556788999888876543333333221100  00000000000       00011111111111111


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                      -+.-... +.+.+|.+.+++++|.|....+++| .|..+.+||+. +.+-..      ..+.+|...|..+...+.- ..
T Consensus       184 ~~~~~~i-~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~------~el~gh~~kV~~l~~~~~t-~~  254 (404)
T KOG1409|consen  184 QNGCQLI-TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTA------YELQGHNDKVQALSYAQHT-RQ  254 (404)
T ss_pred             ecCCceE-EEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCccee------eeeccchhhhhhhhhhhhh-ee
Confidence            1111222 2248999999999999999999999 99999999998 333222      2467899999999888887 89


Q ss_pred             EEEEeCCCeEEEEEccCCc
Q 011368          269 LAYSSSRGFVRLVDMRQSA  287 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~  287 (487)
                      +.+++.||.|.+|+++..+
T Consensus       255 l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  255 LISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeccCCCeEEEEecccee
Confidence            9999999999999998754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1.3e-09  Score=100.21  Aligned_cols=208  Identities=14%  Similarity=0.145  Sum_probs=145.5

Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      +...++|....||.+++|+...++............-.+                      ....|.      .+.....
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~----------------------~~~~w~------L~~~~s~   54 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTC----------------------TYTKWG------LSADYSP   54 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcc----------------------eeEEEE------EEeccch
Confidence            456789999999999999999887665432211110000                      000111      0001111


Q ss_pred             CceeEEEe----CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          205 FNINSISN----NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       205 ~~v~~i~~----s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      ....++.+    +.+...++-| ..|.|.+|++..++...++      .-..|.+.|.++.++.+- ..|.+++.|+.+.
T Consensus        55 ~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~  127 (541)
T KOG4547|consen   55 MKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVV  127 (541)
T ss_pred             HHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEE
Confidence            11112111    3355577778 9999999999955443332      235799999999999887 8999999999999


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP  359 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  359 (487)
                      .|+.......    +.+...             ...+.+++.+|||..+++++ +.|++||+++ .+.+..|.+|..++ 
T Consensus       128 ~~~~~~~~~~----~~~~~~-------------~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v-  187 (541)
T KOG4547|consen  128 YILEKEKVII----RIWKEQ-------------KPLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV-  187 (541)
T ss_pred             EEecccceee----eeeccC-------------CCccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce-
Confidence            9999987655    666652             45789999999999999988 8999999997 99999999999876 


Q ss_pred             ccccccCCCCcceeeEEEEcCC-----CCEEEE-EcCCCcEEEEEeCC
Q 011368          360 KLCDLYNNDSIFDKFECSVSGD-----GLHFAT-GSYSNLLRIFSHGV  401 (487)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~s~d-----~~~l~s-g~~dg~i~iwd~~~  401 (487)
                                    .++.|--+     |.++.+ ...+..+.+|-+..
T Consensus       188 --------------~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  188 --------------RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --------------EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                          46666655     666554 44556788888765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=5.8e-10  Score=108.88  Aligned_cols=150  Identities=15%  Similarity=0.251  Sum_probs=121.2

Q ss_pred             EEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccccee
Q 011368           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (487)
Q Consensus        38 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~  117 (487)
                      +.++++.-++++|+.-+.|.+|+....+..                           .-+.||+            +.|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------------~~l~GHe------------G~iF  179 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP---------------------------IRLKGHE------------GSIF  179 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCc---------------------------ceecccC------------CceE
Confidence            345677778999999999999998733221                           1478898            9999


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (487)
                      ++.|  +.||.++++.+.|+++|+|++++.+...-                                             
T Consensus       180 ~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---------------------------------------------  212 (967)
T KOG0974|consen  180 SIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGC---------------------------------------------  212 (967)
T ss_pred             EEEE--ccCCcEEEEEecCcceeeeecccccccCc---------------------------------------------
Confidence            9999  68999999999999999999998864431                                             


Q ss_pred             eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC-CcEEEEEEecCCCCEEEEEeCC
Q 011368          198 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       198 ~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                       ..-+|..+|..+.|.|+  .++++ .|.+.++|+.+ .. .+.       .+.+|. ..++.++..+.. ..+++++.|
T Consensus       213 -~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~-~l~-------~y~~h~g~~iw~~~~~~~~-~~~vT~g~D  279 (967)
T KOG0974|consen  213 -TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GT-QLE-------VYDEHSGKGIWKIAVPIGV-IIKVTGGND  279 (967)
T ss_pred             -ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cc-eeh-------hhhhhhhcceeEEEEcCCc-eEEEeeccC
Confidence             02689999999999988  78887 99999999776 22 222       245554 578999999988 899999999


Q ss_pred             CeEEEEEccCC
Q 011368          276 GFVRLVDMRQS  286 (487)
Q Consensus       276 g~i~iwd~~~~  286 (487)
                      +.+++||+.+.
T Consensus       280 s~lk~~~l~~r  290 (967)
T KOG0974|consen  280 STLKLWDLNGR  290 (967)
T ss_pred             cchhhhhhhcc
Confidence            99999998874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=2e-10  Score=97.05  Aligned_cols=251  Identities=16%  Similarity=0.177  Sum_probs=142.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc---eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      +.|++|.|  ...|.++++|...|.|.++.-....   .+.+...+..                      ..++.+... 
T Consensus        27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQsh----------------------e~EFDYLkS-   81 (460)
T COG5170          27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSH----------------------ELEFDYLKS-   81 (460)
T ss_pred             ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhccc----------------------ccchhhhhh-
Confidence            67999999  6778999999988999998755432   1100000000                      000000000 


Q ss_pred             eccceeeeecccCCCceeEEEeCCCC---CEEEEecCCeEEEEEccCCCce-----------------------------
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDC---ETFVSADDLRINLWNLEISDQC-----------------------------  238 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~s~~d~~i~iwd~~~~~~~-----------------------------  238 (487)
                                -.-...|..+.|..++   .+|+++.|.+|++|.+......                             
T Consensus        82 ----------leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr  151 (460)
T COG5170          82 ----------LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR  151 (460)
T ss_pred             ----------ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc
Confidence                      1123457788886542   3556669999999988632100                             


Q ss_pred             ----eEEeecCCCC--CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc
Q 011368          239 ----FNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  312 (487)
Q Consensus       239 ----~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  312 (487)
                          ..++-.++..  -..|.-.|.++.|+.+. ..+++ ..|-.|.+|++.-.....   .+...      .+..+.+.
T Consensus       152 ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF---nIVDi------KP~nmeeL  220 (460)
T COG5170         152 LSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF---NIVDI------KPHNMEEL  220 (460)
T ss_pred             ccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce---EEEec------cCccHHHH
Confidence                0111122221  24566778899999886 55554 467789999887543211   11111      01112222


Q ss_pred             ccceeEEEEcCCCC--EEEEEeCCeEEEEeCCCCCceeee---eecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368          313 IASISDIKFANDGQ--HLLSRDYMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       313 ~~~v~~v~~s~~~~--~l~s~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  387 (487)
                      ..-|++..|+|...  ++.+.+.|.|++-|++...-+...   +......+.+  ++ -.+.+..+.++.|+++|++|++
T Consensus       221 teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~--~f-f~eivsSISD~kFs~ngryIls  297 (460)
T COG5170         221 TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV--DF-FEEIVSSISDFKFSDNGRYILS  297 (460)
T ss_pred             HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc--hh-HHHHhhhhcceEEcCCCcEEEE
Confidence            34678889998754  334556699999999842211111   1100000000  00 0011223358999999999997


Q ss_pred             EcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          388 GSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       388 g~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      -+. .+++|||++..+..+.++.-|..
T Consensus       298 Rdy-ltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         298 RDY-LTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             ecc-ceEEEEecccccCCceeechHHH
Confidence            776 48999999988777777766543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.23  E-value=4.5e-09  Score=87.19  Aligned_cols=250  Identities=14%  Similarity=0.090  Sum_probs=156.7

Q ss_pred             EEEEcC-----CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           37 AIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        37 ~~~~s~-----~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .+.|-|     ...+||.|+..|...+|...+.+..                          ......|.          
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h--------------------------~~~cd~sn----------  115 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH--------------------------LYQCDVSN----------  115 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccc--------------------------eeeecccc----------
Confidence            355555     2358899999999999998876542                          22222233          


Q ss_pred             cccceeEEE-EEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          112 IEEKINRVR-WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       112 ~~~~I~~v~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                        ..|+-+. .+  .....+..++.|.++++.++..+.....                                      
T Consensus       116 --n~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~s~~~~--------------------------------------  153 (344)
T KOG4532|consen  116 --NDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGDSNKFA--------------------------------------  153 (344)
T ss_pred             --cchhhhhhhc--ccccceeeccCCcceeEEEEecCcccce--------------------------------------
Confidence              1121111 10  1122467788999999999987653322                                      


Q ss_pred             eccceeeeecccCCC--ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          191 TENMATKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 .|..  .+.++++++|++++++- +...|..|.+........-+     ......+.-.+..|+... .
T Consensus       154 -----------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~  216 (344)
T KOG4532|consen  154 -----------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-L  216 (344)
T ss_pred             -----------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-c
Confidence                       2322  27889999999999987 88999999998655433222     122233445788999988 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC--EEEEEe-CCeEEEEeCCCC
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~-d~~i~iwd~~~~  344 (487)
                      .+|++..||++.|||++...........-            -+.|.+.++.+.|++-|.  +|+... -+.+.+-|+++ 
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sst------------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-  283 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMAEISST------------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-  283 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchhhhccc------------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-
Confidence            99999999999999999865331111111            123789999999998664  444454 38999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .+....+........       .....+++..+|+.++.-+.+.+++ .+.-|++...
T Consensus       284 ~~~~q~I~i~~d~~~-------~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  284 YVNHQVIVIPDDVER-------KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             CceeeEEecCccccc-------cccccccccccccCCCcccccccch-hhheeecccc
Confidence            444433332222100       0011123477888877777666665 4555666543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.21  E-value=3e-09  Score=89.43  Aligned_cols=202  Identities=17%  Similarity=0.201  Sum_probs=132.6

Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      -.++.|  ++.+..++++-.+|.+.+-+.....++...                                          
T Consensus       124 ~lslD~--~~~~~~i~vs~s~G~~~~v~~t~~~le~vq------------------------------------------  159 (339)
T KOG0280|consen  124 ALSLDI--STSGTKIFVSDSRGSISGVYETEMVLEKVQ------------------------------------------  159 (339)
T ss_pred             eeEEEe--eccCceEEEEcCCCcEEEEecceeeeeecc------------------------------------------
Confidence            345667  456777888888998886665554433321                                          


Q ss_pred             eeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          196 TKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                         ....|+-.++...|+. +.+++.+| +|+.+..||++.++..+.      +...-|...|.++.-+|..+.+|++|+
T Consensus       160 ---~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~------~n~kvH~~GV~SI~ss~~~~~~I~TGs  230 (339)
T KOG0280|consen  160 ---TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW------HNSKVHTSGVVSIYSSPPKPTYIATGS  230 (339)
T ss_pred             ---cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee------ecceeeecceEEEecCCCCCceEEEec
Confidence               1378999999999975 45788888 999999999996554432      124568889999999887669999999


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--CEEEEEeCCeEEEEeCCCCC-c---e
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDS-T---P  347 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~d~~i~iwd~~~~~-~---~  347 (487)
                      .|..|++||.|+-..     ..++.            ...+.|+.+.++|.-  ..|+++..+-.+|-+..... +   .
T Consensus       231 YDe~i~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~  293 (339)
T KOG0280|consen  231 YDECIRVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV  293 (339)
T ss_pred             cccceeeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee
Confidence            999999999996331     11222            113689999999853  35566666666777665321 1   1


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEE-EEEeCCC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR-IFSHGVG  402 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~-iwd~~~~  402 (487)
                      ....+.|....               ..-.|..-..+|||++ .|+.++ +|-..++
T Consensus       294 ~~s~~~hdSl~---------------YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  294 LPSDKIHDSLC---------------YGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eecccccccee---------------eccccccccceeeeeeccccceeeeeeeccC
Confidence            22233343211               1233322235678765 577755 7766655

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=3.5e-10  Score=105.90  Aligned_cols=237  Identities=8%  Similarity=0.064  Sum_probs=159.5

Q ss_pred             cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEee------c-CCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------M-KPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~------~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                      .......|+.|+.+..+|++| .||.+++..+.+.....+.-.      + -.+++++|+..|.-+.|+.+. +.|.++.
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD   90 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD   90 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence            345668899999999999999 999999998875432211110      0 024789999999999999998 8999999


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCcee--ee
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPV--AT  350 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~--~~  350 (487)
                      .+|.|.+|-+-.+..+...+..-               ..+-|.+++|+.||..+... .||.|.+=.+.  +..+  +.
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnR---------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgKe  153 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNR---------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGKE  153 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCc---------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecchh
Confidence            99999999998887552211111               14679999999999988876 57888887775  3222  23


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee------EEEeccC----Cccccce
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG------ITVEAGK----NENRKPI  420 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~------~~~~~~~----~~v~~~~  420 (487)
                      +++...                 ..+.||+|.+.+..+-.+|.+.+||.+..=...      ....+-.    ..+....
T Consensus       154 Lkg~~l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~  216 (1189)
T KOG2041|consen  154 LKGQLL-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE  216 (1189)
T ss_pred             cchhec-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence            333322                 378999999999999999999999976421111      1111100    0111221


Q ss_pred             E-------eeCCccccccccceeeecccce-ecC-CCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368          421 L-------QAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       421 ~-------~~~~~~~~~~~~~l~~g~~~~~-~~w-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~  479 (487)
                      +       .|. +...     |+.+..+|. .+- +.........+..-.|....|+++|..||+++.
T Consensus       217 w~~g~~~~v~p-drP~-----lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  217 WNTGPYQPVPP-DRPR-----LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             eccCccccCCC-CCCE-----EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccC
Confidence            1       111 2222     788888887 555 233333333444467889999999999998873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.19  E-value=5.7e-08  Score=87.98  Aligned_cols=252  Identities=12%  Similarity=0.098  Sum_probs=143.0

Q ss_pred             EcCCCCEEEEEec----------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC-ccccccc
Q 011368           40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYLK  108 (487)
Q Consensus        40 ~s~~~~~l~~g~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~  108 (487)
                      +||||+.|+.+..          +..|.+||..+.+..                           ..+.--. |+|.   
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---------------------------~~i~~p~~p~~~---  102 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---------------------------ADIELPEGPRFL---  102 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---------------------------eEEccCCCchhh---
Confidence            9999998877655          789999999988652                           2222110 0000   


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEe-C-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                         .......+++  ++||++++... . +..|.+.|+.+++.........    +...|...+......+.........
T Consensus       103 ---~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658       103 ---VGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             ---ccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEeecCceEEEE
Confidence               0012235666  68999988775 3 7899999999998776543321    2223333333333333322222211


Q ss_pred             eeeeec--cceeeeecccCCCceeE-EEeCC-CCCEEEEecCCeEEEEEccCCC----ceeEEeecCCCCCCCCCCcEEE
Q 011368          187 HLEWTE--NMATKVYPHAHDFNINS-ISNNS-DCETFVSADDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITS  258 (487)
Q Consensus       187 ~~~~~~--~~~~~~~~~~~~~~v~~-i~~s~-~~~~l~s~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~  258 (487)
                      ...-..  ...... +......+.. -.+.+ +|+.+..+..|+|.+.|+...+    ..+.++......-.-..+.+.-
T Consensus       174 ~d~~g~~~~~~~~v-f~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~  252 (352)
T TIGR02658       174 YGTKGNPKIKPTEV-FHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ  252 (352)
T ss_pred             ecCCCceEEeeeee-ecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence            111000  000000 1110111100 03345 8889988855999999975332    1222211100000012234455


Q ss_pred             EEEecCCCCEEEEEe----------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-E
Q 011368          259 AEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-H  327 (487)
Q Consensus       259 v~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~  327 (487)
                      ++++|++ +.+++..          ..+.|.++|..+++..    ..+..              ...+..++++||++ +
T Consensus       253 ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~v--------------G~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       253 VAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIEL--------------GHEIDSINVSQDAKPL  313 (352)
T ss_pred             EEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeC--------------CCceeeEEECCCCCeE
Confidence            9999999 6666642          2258999999998765    44443              25789999999999 7


Q ss_pred             EEEEe--CCeEEEEeCCCCCceeeee
Q 011368          328 LLSRD--YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       328 l~s~~--d~~i~iwd~~~~~~~~~~~  351 (487)
                      |++..  ++.|.++|..+ .+.+..+
T Consensus       314 lyvtn~~s~~VsViD~~t-~k~i~~i  338 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAET-GKELSSV  338 (352)
T ss_pred             EEEeCCCCCcEEEEECcC-CeEEeee
Confidence            77654  48999999987 7777777

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=3.2e-07  Score=82.54  Aligned_cols=172  Identities=22%  Similarity=0.327  Sum_probs=125.5

Q ss_pred             EcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeE
Q 011368           40 FDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (487)
Q Consensus        40 ~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~  118 (487)
                      |++ +|.+++..++ |...|.+...+-                             ..--+|.            +.|.-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-----------------------------~iqv~~~------------~~VrY  364 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGY-----------------------------SIQVGKK------------GGVRY  364 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCe-----------------------------eEEcCCC------------CceEE
Confidence            444 6888888875 677777654442                             1123444            67888


Q ss_pred             EEEEecCCCcEEEEEeCCC-cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368          119 VRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (487)
Q Consensus       119 v~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (487)
                      .++  ..+++-++.|..|| .+-++|..+++.+.+                                             
T Consensus       365 ~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~---------------------------------------------  397 (668)
T COG4946         365 RRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI---------------------------------------------  397 (668)
T ss_pred             EEE--ccCCcceEEeccCCceEEEEecCCceEEEe---------------------------------------------
Confidence            888  45666888999998 899999999987765                                             


Q ss_pred             eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368          198 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  276 (487)
Q Consensus       198 ~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  276 (487)
                         ...-+.|.++..+|+|+.++.+ ....|.+.|++++.. . +++      +...+-|+.++|+|++ .+||.+--+|
T Consensus       398 ---e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~-~id------kS~~~lItdf~~~~ns-r~iAYafP~g  465 (668)
T COG4946         398 ---EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-R-LID------KSEYGLITDFDWHPNS-RWIAYAFPEG  465 (668)
T ss_pred             ---eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-e-Eec------ccccceeEEEEEcCCc-eeEEEecCcc
Confidence               5667889999999999999999 888999999995432 2 211      2234569999999999 9999987765


Q ss_pred             ----eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          277 ----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       277 ----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                          .|+++|+.+++..    ..-..              .+.=.+-+|.||+++|.-
T Consensus       466 y~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         466 YYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             eeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEEE
Confidence                6999999997643    11111              123356688999998763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=4.1e-10  Score=105.81  Aligned_cols=300  Identities=13%  Similarity=0.147  Sum_probs=189.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      -.+.+.++..+|.|+-+|.++.-| +.+-|++..-.                       ..+.+..+..           
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~tp-----------   67 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHITP-----------   67 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------CceeeeccCc-----------
Confidence            356788999999999999998776 55668765432                       2222222222           


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         -.|-.+.|+|.+...+-++......-.+|++....-..+                                      
T Consensus        68 ---w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI--------------------------------------  106 (1081)
T KOG0309|consen   68 ---WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI--------------------------------------  106 (1081)
T ss_pred             ---chhcceecccCCCCceeEEecCcchhhhhhhhcCCccce--------------------------------------
Confidence               336778898766666666655556667898865432111                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                            ..++.+|...|+.+.|+|.. ..++++ .|..+..||++.....+...       ..-......|+|+-.. ..
T Consensus       107 ------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------~~w~s~asqVkwnyk~-p~  172 (1081)
T KOG0309|consen  107 ------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------SSWRSAASQVKWNYKD-PN  172 (1081)
T ss_pred             ------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------ecccccCceeeecccC-cc
Confidence                  11257999999999999864 567788 99999999999877666442       2233445789999776 44


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeCCeEEEEeCCCCCc
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDST  346 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d~~i~iwd~~~~~~  346 (487)
                      +++.+..+.|++||++.+...   +..+++             |...|+.+.|+.-  +..+-+..|++|++||.....+
T Consensus       173 vlasshg~~i~vwd~r~gs~p---l~s~K~-------------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTP---LCSLKG-------------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcc---eEEecc-------------cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            555566778999999987643   133333             4677888888743  3344445679999999865222


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcC-----------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      .-........++               +...+-|           .+..+----.++....|+..++...+..+.+|.+.
T Consensus       237 e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~  301 (1081)
T KOG0309|consen  237 ESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV  301 (1081)
T ss_pred             ccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH
Confidence            111111111111               2223333           22222222233445567777777779999999998


Q ss_pred             cccceEeeCC--------ccccccccceeeecccce-ecCCCCCcccccc
Q 011368          416 NRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSSSGHHELSY  456 (487)
Q Consensus       416 v~~~~~~~~~--------~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~  456 (487)
                      |....+....        ....     |++=+.|.. ++|..+..+....
T Consensus       302 V~eFlWR~r~e~~~d~d~rdfQ-----LVTWSkD~~lrlWpI~~~i~~~~  346 (1081)
T KOG0309|consen  302 VLEFLWRKRKECDGDYDSRDFQ-----LVTWSKDQTLRLWPIDSQIQRLC  346 (1081)
T ss_pred             HHHHhhhhcccccCCCCcccee-----EEEeecCCceEeeeccHHHHHhh
Confidence            8776665421        1112     788888888 9996654444333

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=3.4e-07  Score=94.51  Aligned_cols=218  Identities=13%  Similarity=0.144  Sum_probs=126.8

Q ss_pred             cceeEEEEEecCCCcEEEEEeC------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      ..-..|+|  ..||++||+.+-      -+.+|||+-+ |.+....                                  
T Consensus       210 d~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS----------------------------------  252 (928)
T PF04762_consen  210 DGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS----------------------------------  252 (928)
T ss_pred             CCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc----------------------------------
Confidence            55678899  789999998763      2578999876 4433221                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c---CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                   ..-.+--.+++|.|.|++||+. .   ...|.+|..+ +-+.-+ +.+   .+......|..+.|++
T Consensus       253 -------------E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhge-F~l---~~~~~~~~v~~l~Wn~  314 (928)
T PF04762_consen  253 -------------EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGE-FTL---RFDPEEEKVIELAWNS  314 (928)
T ss_pred             -------------ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeee-Eec---CCCCCCceeeEEEECC
Confidence                         1112223478999999999997 3   4567777655 322221 211   1234556789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeC
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDI  341 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~  341 (487)
                      ++ ..||....|. |.+|-..+-....+....+..              ...+..+.|+|... .|.... .|.+..+++
T Consensus       315 ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  315 DS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            99 9999987665 999988875432211112222              23345588887543 233332 255544433


Q ss_pred             C----CC-------Cceeeeeeccccc--------ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          342 R----MD-------STPVATFKIHEHL--------RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       342 ~----~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .    ..       ...+..+.+..-.        +|.-...+.-..-..|.+++|++++..+++-..||.|.+|.....
T Consensus       379 ~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  379 AWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            1    10       0122222222211        111111111111123469999999988999999999999996553

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.15  E-value=2.6e-09  Score=91.73  Aligned_cols=248  Identities=9%  Similarity=0.056  Sum_probs=173.1

Q ss_pred             eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccc
Q 011368           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      .++..++||.            +.|+.....  |...-+.+.+.|.++++|--. .++.-..                  
T Consensus        15 ~ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wps------------------   62 (404)
T KOG1409|consen   15 ELLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWPS------------------   62 (404)
T ss_pred             hhhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCch------------------
Confidence            3556678887            778877774  444568999999999999544 3332211                  


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                                  .......+++++.+.++...|+.| +.|++.-+.+...-.....    ++..
T Consensus        63 ----------------------------I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~----~r~~  110 (404)
T KOG1409|consen   63 ----------------------------IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF----LKDY  110 (404)
T ss_pred             ----------------------------hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch----hhhh
Confidence                                        013446778999999999999999 9999998877633222211    2345


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                      ..|...+..+.|+-.. ..+++.+.|..+.---.+.+..+..  ..+..                ..+++.+.-.  +..
T Consensus       111 ~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~--Y~~~~----------------~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen  111 LAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGG--YNFET----------------PASALQFDAL--YAF  169 (404)
T ss_pred             hhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccc--eEeec----------------cCCCCceeeE--EEE
Confidence            6799999999999876 8999999998775555555433211  11111                1111111111  333


Q ss_pred             EEeC-CeEEEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          330 SRDY-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       330 s~~d-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      .|.. |.|.+-.+.. .-.++..+.+|...+               ++++|.|..+.|.+|..|..+.+||+--.+....
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence            4443 5555544432 145677888888755               6999999999999999999999999998888899


Q ss_pred             EEeccCCccccceEeeCCccccccccceeeecccce-ecC
Q 011368          408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      ++.+|.+.|..+...+  -.+.     +.+.+.|+. .+|
T Consensus       235 el~gh~~kV~~l~~~~--~t~~-----l~S~~edg~i~~w  267 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQ--HTRQ-----LISCGEDGGIVVW  267 (404)
T ss_pred             eeccchhhhhhhhhhh--hhee-----eeeccCCCeEEEE
Confidence            9999999999888776  3334     889999998 888

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.14  E-value=1.3e-09  Score=95.66  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      .+|-+.+++++|+||+++|+++ .|..|++-..... -.+..      -.-||...|..++.-++  ..|++++.|++|+
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Ies------fclGH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIES------FCLGHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhh------hccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence            7999999999999999999999 9999999877632 22221      13579999999999887  5799999999999


Q ss_pred             EEEccCCccc
Q 011368          280 LVDMRQSALC  289 (487)
Q Consensus       280 iwd~~~~~~~  289 (487)
                      +||+++++.+
T Consensus       219 ~Wd~~sgk~L  228 (390)
T KOG3914|consen  219 LWDITSGKLL  228 (390)
T ss_pred             EEecccCCcc
Confidence            9999999865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.14  E-value=1.3e-07  Score=99.47  Aligned_cols=186  Identities=13%  Similarity=0.130  Sum_probs=105.9

Q ss_pred             eEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecC-CCCCCC------CCCcEEEEEEecCCCC-EEEEEeCCCe
Q 011368          208 NSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK-PSNMDD------LTEVITSAEFHPIYCN-LLAYSSSRGF  277 (487)
Q Consensus       208 ~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~------~~~~v~~v~~~p~~~~-~l~~~~~dg~  277 (487)
                      ..++++| ++.++++. .++.|++||...+ ......... .....+      .-.....++++|++ . ++++-+.++.
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n~~  763 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDG-VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSESSS  763 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCC-eEEEEecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCCCe
Confidence            5789999 45555665 8899999998743 222111000 000111      11245779999998 6 5555566799


Q ss_pred             EEEEEccCCccccccceeecccccc--cCcccccc--------ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          278 VRLVDMRQSALCDHSARILRDAAES--HGSKSFFT--------EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~--~~~~~~~~--------~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      |++||+.++...     ...+ ...  +.....+.        ..-.....++++++|..+++-. ++.|++||..+ +.
T Consensus       764 Irv~D~~tg~~~-----~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~  836 (1057)
T PLN02919        764 IRALDLKTGGSR-----LLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR  836 (1057)
T ss_pred             EEEEECCCCcEE-----EEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence            999999876421     1110 000  00000000        0012346889999998766654 49999999875 43


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      .. .+.+....-.. ..............++++++|+.+++-+.++.|++||+.+++.
T Consensus       837 v~-tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        837 VT-TLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EE-EEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            33 33221100000 0000000111225899999999999989999999999998754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.14  E-value=4.5e-08  Score=88.67  Aligned_cols=282  Identities=11%  Similarity=0.099  Sum_probs=164.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecC---------------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCccee
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRG---------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY   93 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~d---------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (487)
                      +.|. .|..+.|||.++||.+=+..               +.+.+||..++..                           
T Consensus        69 ~~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i---------------------------  120 (561)
T COG5354          69 FRHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI---------------------------  120 (561)
T ss_pred             eecC-CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee---------------------------
Confidence            3344 48999999999999986533               3489999988865                           


Q ss_pred             EeeecCCCcccccccccccccc--ee-EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCC-Cceeeeecccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEK--IN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF-PFVSSENTLLA  169 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~--I~-~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~  169 (487)
                      +..+.+-.            .+  .. -+.|  +.+++++|-. ....+.|+++ ++........... ..+..+.+.+.
T Consensus       121 v~sf~~~~------------q~~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         121 VFSFNGIS------------QPYLGWPVLKF--SIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             EeeccccC------------Ccccccceeee--eecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence            34444433            22  33 5677  4566665544 3346889987 4433322211111 33444555443


Q ss_pred             -ccccccccC---CCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe------------cCCeEEEEEcc
Q 011368          170 -EKNFMNEHN---PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA------------DDLRINLWNLE  233 (487)
Q Consensus       170 -~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~------------~d~~i~iwd~~  233 (487)
                       ++..++...   .+.................+. .-....=..+.|.+.|++|..-            ....++|+++.
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence             222212111   111111111111111111111 0011112356788888877652            12457777776


Q ss_pred             CCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccc
Q 011368          234 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  311 (487)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  311 (487)
                      ...  +..       .....++|...+|.|.+ +.+++.+  .+-.+.++|++..- .    ..+.              
T Consensus       264 e~~--i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl-~----~~~P--------------  314 (561)
T COG5354         264 ERS--IPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGNL-R----FYFP--------------  314 (561)
T ss_pred             ccc--cce-------eccccccceeeeecccC-CceeEEecccccceeecccccce-E----EecC--------------
Confidence            222  211       11456889999999998 6666555  57889999998762 1    1111              


Q ss_pred             cccceeEEEEcCCCCEEEEEe--C--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368          312 IIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       312 ~~~~v~~v~~s~~~~~l~s~~--d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  387 (487)
                       +..=+.+.|+|.+++++.++  .  |.+-+||.......+..+.+...                 .-+.|+||++++.+
T Consensus       315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-----------------s~~~wspd~qF~~~  376 (561)
T COG5354         315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-----------------SYCDWSPDGQFYDT  376 (561)
T ss_pred             -CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-----------------eEeeccCCceEEEe
Confidence             23457788999999998753  2  99999998753334445555543                 25789999999887


Q ss_pred             EcC------CCcEEEEEeCCC
Q 011368          388 GSY------SNLLRIFSHGVG  402 (487)
Q Consensus       388 g~~------dg~i~iwd~~~~  402 (487)
                      ...      |..|.|||+...
T Consensus       377 ~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         377 DTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cCCCcccccCcceEEEEecCc
Confidence            643      788999999753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.13  E-value=8.4e-08  Score=86.16  Aligned_cols=149  Identities=14%  Similarity=0.239  Sum_probs=114.4

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCC-cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      -++.|...|.-..+..+++-++.|..|| .+-|+|.++++.                            ..+...-    
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------------kr~e~~l----  401 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------------KRIEKDL----  401 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------------EEeeCCc----
Confidence            3566788899999999988999999999 899999998863                            3344444    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              +.|.++..  +++|++++.+.....+.+.|++++....+.                                
T Consensus       402 --------g~I~av~v--s~dGK~~vvaNdr~el~vididngnv~~id--------------------------------  439 (668)
T COG4946         402 --------GNIEAVKV--SPDGKKVVVANDRFELWVIDIDNGNVRLID--------------------------------  439 (668)
T ss_pred             --------cceEEEEE--cCCCcEEEEEcCceEEEEEEecCCCeeEec--------------------------------
Confidence                    77999999  689999999999899999999999866542                                


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                     ....+-|+.+.|+|++++||.+ -+    ..|+++|+. +++...+.        ...+.=.+-+
T Consensus       440 ---------------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~vT--------T~ta~DfsPa  495 (668)
T COG4946         440 ---------------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDVT--------TPTAYDFSPA  495 (668)
T ss_pred             ---------------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEec--------CCcccccCcc
Confidence                           4456779999999999999997 54    468999999 55555431        1222234567


Q ss_pred             EecCCCCEEEEEeC
Q 011368          261 FHPIYCNLLAYSSS  274 (487)
Q Consensus       261 ~~p~~~~~l~~~~~  274 (487)
                      |.|++ ++|..-+.
T Consensus       496 FD~d~-ryLYfLs~  508 (668)
T COG4946         496 FDPDG-RYLYFLSA  508 (668)
T ss_pred             cCCCC-cEEEEEec
Confidence            88998 77766543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.09  E-value=7.2e-07  Score=80.95  Aligned_cols=234  Identities=11%  Similarity=0.049  Sum_probs=121.8

Q ss_pred             eCCCCCEEEEe-c----------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-C-CCeE
Q 011368          212 NNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S-RGFV  278 (487)
Q Consensus       212 ~s~~~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~-dg~i  278 (487)
                      ++||++.|+.+ .          +..|.+||..+.. ....+.+++............++++|+| ++|++.. . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEE
Confidence            89999999887 5          6899999999554 3433322211000012234578999999 8888766 3 6899


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCcee-eeeec-ccc
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV-ATFKI-HEH  356 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~-~~~~~-~~~  356 (487)
                      .+.|+.+++.+    ..+..              .. ...+--.++..+++-|.||......+...++.. ..... +..
T Consensus       131 ~VvD~~~~kvv----~ei~v--------------p~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~  191 (352)
T TIGR02658       131 GVVDLEGKAFV----RMMDV--------------PD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE  191 (352)
T ss_pred             EEEECCCCcEE----EEEeC--------------CC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence            99999998755    33332              01 111111223333344444444444443323311 00000 000


Q ss_pred             cccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCce----eEEEecc-------CCccccceEeeC
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAG----GITVEAG-------KNENRKPILQAA  424 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~-------~~~v~~~~~~~~  424 (487)
                                .+.++  ..-.|++ +|+++.+... |+|.+.|+...+..    ...+...       ..-...+++.+ 
T Consensus       192 ----------~~~v~--~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-  257 (352)
T TIGR02658       192 ----------DEYLI--NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-  257 (352)
T ss_pred             ----------ccccc--cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-
Confidence                      00111  1124455 8888877666 99999997553221    1111110       11112355554 


Q ss_pred             Cccccccccceee-e--cc-----cce-ecC--CCC-CccccccccCCCeEEEEEcCCCC-EEEEec--CCeEEEEe
Q 011368          425 PRARRSSLSNLTR-G--LY-----RQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~-g--~~-----~~~-~~w--~~~-~~~~~~~~~~~~v~~~~~spd~~-~la~~s--~~~~~i~~  486 (487)
                       +++.     +.. .  ..     ++. ++|  +.. ............+..++++||++ +|.+.+  .+.+.++.
T Consensus       258 -dg~~-----lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       258 -ARDR-----IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             -CCCE-----EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence             3333     332 1  11     222 555  221 12222334456888999999999 777666  44577765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.06  E-value=1.7e-09  Score=101.80  Aligned_cols=297  Identities=15%  Similarity=0.163  Sum_probs=186.1

Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                      +---+++.++++.++..  +|.|+-++.++.-| +.+-|+...-..                                  
T Consensus        16 ~kslsl~v~~~~~a~si--~p~grdi~lAsr~g-l~i~dld~p~~p----------------------------------   58 (1081)
T KOG0309|consen   16 GKSLSLKVDGGFNAVSI--NPSGRDIVLASRQG-LYIIDLDDPFTP----------------------------------   58 (1081)
T ss_pred             CceeEEEecCcccceee--ccccchhhhhhhcC-eEEEeccCCCCC----------------------------------
Confidence            33344555688899998  46677788888776 445566542100                                  


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCC---CCEEEEecCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEE
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSD---CETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                 .+-+..-..-.|-...|+|.   ...+++.....-.+|++.... +.+..      .+.+|...|+.+.
T Consensus        59 -----------pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n  121 (1081)
T KOG0309|consen   59 -----------PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDIN  121 (1081)
T ss_pred             -----------ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccc
Confidence                       00000112234556677664   233444455566688886432 33333      2578999999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEeCCeEEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNLKLW  339 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~d~~i~iw  339 (487)
                      |+|+.+..+++++.|-.+..||+++.....   ..+..             -...-..+.|+.. +..+|+...+.|++|
T Consensus       122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~---ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPF---YSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             cCCCCCcceeeccccccceeeeccCCCcce---eeeec-------------ccccCceeeecccCcchhhhccCCceEEE
Confidence            999999999999999999999999865331   22222             1245678899854 455555555899999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      |++.++.++..+++|...+               ..+.|.. -...+.+.+.||+|+.||.....+..........++..
T Consensus       186 d~r~gs~pl~s~K~~vs~v---------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~  250 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSV---------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR  250 (1081)
T ss_pred             eccCCCcceEEecccceee---------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee
Confidence            9999889999999876543               3566653 23457889999999999998765544444555566666


Q ss_pred             ceEeeCCcccc---ccccceeee-cccce-ecC---CCCCccccccccCCCeEEEEEcCCCC----------EEEEecCC
Q 011368          419 PILQAAPRARR---SSLSNLTRG-LYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACANGN  480 (487)
Q Consensus       419 ~~~~~~~~~~~---~~~~~l~~g-~~~~~-~~w---~~~~~~~~~~~~~~~v~~~~~spd~~----------~la~~s~~  480 (487)
                      ..+.|-.+|..   ...++++-- ..+.. ..|   .....+..+.+|++.|....|...+.          .|++=|.|
T Consensus       251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD  330 (1081)
T KOG0309|consen  251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD  330 (1081)
T ss_pred             ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence            66666544432   000000100 11112 445   23345567778998888877765443          46666644


Q ss_pred             -eEEEEe
Q 011368          481 -SLFFHY  486 (487)
Q Consensus       481 -~~~i~~  486 (487)
                       .+.+|-
T Consensus       331 ~~lrlWp  337 (1081)
T KOG0309|consen  331 QTLRLWP  337 (1081)
T ss_pred             CceEeee
Confidence             477774

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=1e-07  Score=90.18  Aligned_cols=197  Identities=13%  Similarity=0.085  Sum_probs=116.5

Q ss_pred             CcEEEEEEcCCCCE-EEEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           33 DIVSAIEFDKTGDY-LAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        33 ~~V~~~~~s~~~~~-l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..+....|+|||+. ++..+.   +..|.++|+.+++.                         +.+...   .       
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------------------------~~lt~~---~-------  232 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------------------------EKIASS---Q-------  232 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------------------------EEEecC---C-------
Confidence            46778999999984 665443   34688888877753                         122222   2       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEE-eCC--CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILS-TND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                           +.....+|  +|||+.++.. +.+  ..|.++|+.++....+                                 
T Consensus       233 -----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L---------------------------------  272 (419)
T PRK04043        233 -----GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI---------------------------------  272 (419)
T ss_pred             -----CcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEc---------------------------------
Confidence                 44556778  6788776653 333  4677778777764433                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                     ..+........|+|||+.|+..  ..+  .|++.|+.. +...++.      ..+.    ....|
T Consensus       273 ---------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt------~~g~----~~~~~  326 (419)
T PRK04043        273 ---------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSVEQVV------FHGK----NNSSV  326 (419)
T ss_pred             ---------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCeEeCc------cCCC----cCceE
Confidence                           2222223345799999887765  333  677778873 3332221      1111    12489


Q ss_pred             ecCCCCEEEEEeCC---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          262 HPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       262 ~p~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      +|+| +.|+..+..         ..|.+.|+.++..     +.+..              ........|+|||+.|+...
T Consensus       327 SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        327 STYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCCeEECCCCCEEEEEE
Confidence            9999 777766643         2677778877652     22222              01223578999999887543


Q ss_pred             -C---CeEEEEeCCCCCceeeeee
Q 011368          333 -Y---MNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       333 -d---~~i~iwd~~~~~~~~~~~~  352 (487)
                       .   ..+.+.++.  +.....+.
T Consensus       387 ~~~~~~~L~~~~l~--g~~~~~l~  408 (419)
T PRK04043        387 YLGNQSALGIIRLN--YNKSFLFP  408 (419)
T ss_pred             ccCCcEEEEEEecC--CCeeEEee
Confidence             2   346666664  44444444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.04  E-value=2.5e-07  Score=87.52  Aligned_cols=303  Identities=11%  Similarity=0.079  Sum_probs=153.8

Q ss_pred             CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (487)
Q Consensus        44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~  123 (487)
                      +..+++++.+|.|.-+|..+++..                           -.++-.             ..+..   .|
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~---------------------------W~~~~~-------------~~~~~---~p  101 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRL---------------------------WRVDLD-------------ERLSG---GV  101 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEe---------------------------eeecCC-------------CCccc---ce
Confidence            567888888999999998888642                           111111             11111   11


Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      ..++..++.++.++.+..+|..+|+.......                                                
T Consensus       102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------------------------------------  133 (377)
T TIGR03300       102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKL------------------------------------------------  133 (377)
T ss_pred             EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc------------------------------------------------
Confidence            23466788888999999999988886543211                                                


Q ss_pred             CCceeE-EEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          204 DFNINS-ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       204 ~~~v~~-i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      ...+.+ ...  .+..++.+ .++.++.||.+++....+.- .....+. .... .+.... +  ..++.+..++.+..+
T Consensus       134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~-~~~~-~sp~~~-~--~~v~~~~~~g~v~al  205 (377)
T TIGR03300       134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALT-LRGS-ASPVIA-D--GGVLVGFAGGKLVAL  205 (377)
T ss_pred             CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCcee-ecCC-CCCEEE-C--CEEEEECCCCEEEEE
Confidence            011111 011  23455556 89999999998665544321 1000000 0000 111111 2  367778888999999


Q ss_pred             EccCCccccccceeecccccccCccccccccccce-eEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeeccccccc
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRP  359 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  359 (487)
                      |.++++..      ++.....+....... ....+ ....+. ++ .++.+ .++.++.||..+ ++.+........   
T Consensus       206 d~~tG~~~------W~~~~~~~~g~~~~~-~~~~~~~~p~~~-~~-~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~~---  272 (377)
T TIGR03300       206 DLQTGQPL------WEQRVALPKGRTELE-RLVDVDGDPVVD-GG-QVYAVSYQGRVAALDLRS-GRVLWKRDASSY---  272 (377)
T ss_pred             EccCCCEe------eeeccccCCCCCchh-hhhccCCccEEE-CC-EEEEEEcCCEEEEEECCC-CcEEEeeccCCc---
Confidence            99988643      211000000000000 00000 111121 33 45544 569999999987 666554442111   


Q ss_pred             ccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-cCCccccceEeeCCccccccccceeee
Q 011368          360 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRG  438 (487)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~g  438 (487)
                                    ..+..  ++..++.++.||.++.+|..+++.. ..... ..........    .+..     +..+
T Consensus       273 --------------~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~~~~ssp~i----~g~~-----l~~~  326 (377)
T TIGR03300       273 --------------QGPAV--DDNRLYVTDADGVVVALDRRSGSEL-WKNDELKYRQLTAPAV----VGGY-----LVVG  326 (377)
T ss_pred             --------------cCceE--eCCEEEEECCCCeEEEEECCCCcEE-EccccccCCccccCEE----ECCE-----EEEE
Confidence                          12222  4567888889999999999988543 22211 1111111111    1122     6677


Q ss_pred             cccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEE
Q 011368          439 LYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFH  485 (487)
Q Consensus       439 ~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~  485 (487)
                      +.++. .++  ..++.+....-+...+..--.-.+++ |.+++.| .+|.|
T Consensus       327 ~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~  376 (377)
T TIGR03300       327 DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF  376 (377)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence            77777 666  33444433322222222211123344 5555544 58776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.02  E-value=1.4e-06  Score=91.90  Aligned_cols=189  Identities=10%  Similarity=0.095  Sum_probs=107.1

Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeec-CC--CCCCCC-------CCcEEEEEEecCCCCEEEEE
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KP--SNMDDL-------TEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-~~--~~~~~~-------~~~v~~v~~~p~~~~~l~~~  272 (487)
                      .....++++++++.|+.+  .++.|+.+|..+ +. +.++.. ..  ....+.       -.....++++|++..++++.
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~-~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVN-ET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCC-CE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            345788999988877666  567899999873 32 222210 00  000110       12346899999542677777


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCc--cccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCcee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGS--KSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~  348 (487)
                      +.++.|++||..++..     ..+.+.......  .......-.....|+++|+|+.|+.++  ++.|++||+.+ +...
T Consensus       702 ~~~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~  775 (1057)
T PLN02919        702 AGQHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR  775 (1057)
T ss_pred             CCCCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE
Confidence            7889999999987643     222220000000  000000113467799999998666653  48999999976 3321


Q ss_pred             eeeecccccc-cccccccCC------CCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          349 ATFKIHEHLR-PKLCDLYNN------DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       349 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                       .+.+..... .....+...      ........++++++|..+++-+.++.|++||..++
T Consensus       776 -~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        776 -LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             -EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence             111100000 000000000      00111248999999998888999999999999876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=5.7e-07  Score=85.18  Aligned_cols=150  Identities=11%  Similarity=0.091  Sum_probs=88.5

Q ss_pred             CCCceeEEEeCCCCCEEEEe--c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CC-
Q 011368          203 HDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG-  276 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg-  276 (487)
                      ..+......|+|||+.++..  .  +..|.++|+.. +....+        ..+........|+|+| +.|+..+. .+ 
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~~~~L--------T~~~~~d~~p~~SPDG-~~I~F~Sdr~g~  300 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-KTLTQI--------TNYPGIDVNGNFVEDD-KRIVFVSDRLGY  300 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-CcEEEc--------ccCCCccCccEECCCC-CEEEEEECCCCC
Confidence            34455667899999887764  3  45688888873 333222        2222223345799999 76766664 33 


Q ss_pred             -eEEEEEccCCcccccccee-ecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---------CeEEEEeCCCC
Q 011368          277 -FVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---------MNLKLWDIRMD  344 (487)
Q Consensus       277 -~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---------~~i~iwd~~~~  344 (487)
                       .|.+.|+.+++..    +. +.+                . ....|+|||++|+... .         ..|.+.|+.. 
T Consensus       301 ~~Iy~~dl~~g~~~----rlt~~g----------------~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-  358 (419)
T PRK04043        301 PNIFMKKLNSGSVE----QVVFHG----------------K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-  358 (419)
T ss_pred             ceEEEEECCCCCeE----eCccCC----------------C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-
Confidence             5777777766531    11 111                1 1248999999988542 1         2678888865 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-Cc--EEEEEeCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NL--LRIFSHGV  401 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~--i~iwd~~~  401 (487)
                      +. ...+......                ....|+|||+.|+..+.+ +.  +.+.++..
T Consensus       359 g~-~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        359 DY-IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CC-eEECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            33 3333322111                258899999988766543 33  55555543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.94  E-value=4.2e-08  Score=81.22  Aligned_cols=150  Identities=13%  Similarity=0.111  Sum_probs=94.4

Q ss_pred             eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-----CCCeEEEEEccC
Q 011368          212 NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQ  285 (487)
Q Consensus       212 ~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~iwd~~~  285 (487)
                      .+--++.++++ .||.+.+.+.+.-.....       +.+.-...-.+......+ +.+.++.     .-+..+.|+++.
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~-------~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p  168 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDKDLALMS-------RIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDP  168 (319)
T ss_pred             ccccCCceEecCCCceEEEEechHHHhhhh-------hcccccccccccceeecc-cEEecCCcceEeeccceeeecccc
Confidence            34446778888 999999998874211111       111111111222223333 4444332     123456666665


Q ss_pred             CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEEeCCCCCceeeeeeccccccccccc
Q 011368          286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      .+..      ...+           .--..|.+++-+|..+.+++ |+ +|.+.+||.+....+...++.|+..+     
T Consensus       169 ~~t~------~~~~-----------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i-----  226 (319)
T KOG4714|consen  169 IKTL------IPSK-----------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI-----  226 (319)
T ss_pred             cccc------cccc-----------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh-----
Confidence            4321      1110           00134889999997766654 55 49999999998667778888898865     


Q ss_pred             ccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCC
Q 011368          364 LYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~  401 (487)
                                +.+.|+| ++..|.++++||.+.-||..+
T Consensus       227 ----------~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  227 ----------WEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ----------hheeccCCCchheeEecCCCcEEEEcCCC
Confidence                      6899999 788999999999999999875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.90  E-value=1.1e-08  Score=105.59  Aligned_cols=187  Identities=17%  Similarity=0.219  Sum_probs=138.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.++.=+  |...+.++|+.||.|++|....++.....                                        
T Consensus      2209 ~~v~r~~sH--p~~~~Yltgs~dgsv~~~~w~~~~~v~~~---------------------------------------- 2246 (2439)
T KOG1064|consen 2209 ENVRRMTSH--PSDPYYLTGSQDGSVRMFEWGHGQQVVCF---------------------------------------- 2246 (2439)
T ss_pred             CceeeecCC--CCCceEEecCCCceEEEEeccCCCeEEEe----------------------------------------
Confidence            445555554  45678999999999999998877654321                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                         +   ......|+.+.|+.+|+.+..+ .||.+.+|.+. +. .+.       ..+.|+.....+.|-.   ..++++
T Consensus      2247 ---r---t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk-~~~-------s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2247 ---R---TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK-PYT-------SWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred             ---e---ccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc-cee-------ccccCCccccceeeee---hhhhcc
Confidence               1   2333889999999999999999 99999999988 32 221       3567888888888875   346665


Q ss_pred             e---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          273 S---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       273 ~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      +   .++.+.+||..-....   ..+-.             .|.+.++++++-|..+.|++|+ +|.|++||++. .+.+
T Consensus      2309 g~s~d~~n~~lwDtl~~~~~---s~v~~-------------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq-rql~ 2371 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMN---SLVHT-------------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLR 2371 (2439)
T ss_pred             ccCCCCCcccchhcccCccc---ceeee-------------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHH-HHHH
Confidence            4   3689999997643211   01113             3578999999999999999987 49999999985 6655


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..++.                        +. ...++++|+..|.|+||++..-
T Consensus      2372 h~~~~------------------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2372 HTFQA------------------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             HHhhh------------------------hh-hhheeeccCcccceEEEEcccc
Confidence            55543                        12 3568999999999999999865

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.90  E-value=4.2e-06  Score=71.03  Aligned_cols=181  Identities=19%  Similarity=0.203  Sum_probs=110.9

Q ss_pred             CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC-C-CCCCCcEEEEEEecCC-----CCEEEEEeCC
Q 011368          204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-M-DDLTEVITSAEFHPIY-----CNLLAYSSSR  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~-~~~~~~v~~v~~~p~~-----~~~l~~~~~d  275 (487)
                      ...=+-++||||+.+||.+ ..|+|+++|+. +..+..+   ++.. . ......|..+.|-+-.     ...|++-..+
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~  118 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR  118 (282)
T ss_pred             CchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEecc
Confidence            3445789999999999999 99999999998 4444432   2211 1 1223567777775431     2467777788


Q ss_pred             CeEEEEEccCCcc-ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C-C---------eEEEEeCC
Q 011368          276 GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-M---------NLKLWDIR  342 (487)
Q Consensus       276 g~i~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d-~---------~i~iwd~~  342 (487)
                      |.++=|-+..+.. -.+....|..          ...+...|.++.++|..++|+.|+  . .         -+.-|.+-
T Consensus       119 G~L~Sy~vs~gt~q~y~e~hsfsf----------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL  188 (282)
T PF15492_consen  119 GQLRSYLVSVGTNQGYQENHSFSF----------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRIL  188 (282)
T ss_pred             ceeeeEEEEcccCCcceeeEEEEe----------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEc
Confidence            8887776543211 1111122221          112356899999999988887653  1 1         36778775


Q ss_pred             CCCceeeee-eccccccc------c---ccc--c-----cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          343 MDSTPVATF-KIHEHLRP------K---LCD--L-----YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       343 ~~~~~~~~~-~~~~~~~~------~---~~~--~-----~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      . +.+.... ......+.      .   +..  +     ...+.+   ..|..||||+.||+...+|.|.+|++.+-
T Consensus       189 ~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  189 S-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             C-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            4 3332221 11111110      0   000  1     123444   59999999999999999999999999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.88  E-value=2.5e-06  Score=72.40  Aligned_cols=192  Identities=15%  Similarity=0.210  Sum_probs=112.1

Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      =..++|  +||+.+||.+...|+|+++|+.+..+..+....                                       
T Consensus        46 WRkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~---------------------------------------   84 (282)
T PF15492_consen   46 WRKLAW--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM---------------------------------------   84 (282)
T ss_pred             heEEEE--CCCCcEEEEEcCCCeEEEEecccceeEEcCccc---------------------------------------
Confidence            467999  689999999999999999999876554331100                                       


Q ss_pred             eeeecccCCCceeEEEeCC-------CCCEEEEecCCeEEEEEccC--CCceeEEeecCCCCCC-CCCCcEEEEEEecCC
Q 011368          196 TKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI--SDQCFNIVDMKPSNMD-DLTEVITSAEFHPIY  265 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~-------~~~~l~s~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~  265 (487)
                        .+...-...|..+.|.+       ..++|+...+|.++-|-+..  .+.-.+...   ..+. .+...|.++.++|..
T Consensus        85 --~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs---fsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   85 --SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS---FSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             --ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE---EEecccCCCceeEEEEcCCC
Confidence              00011123344444432       13455555777777776532  111111100   0122 246689999999998


Q ss_pred             CCEEEEEeCC-----------CeEEEEEccCCccccccceeecccccccC-cc--------ccc---cccccceeEEEEc
Q 011368          266 CNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRDAAESHG-SK--------SFF---TEIIASISDIKFA  322 (487)
Q Consensus       266 ~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~-~~--------~~~---~~~~~~v~~v~~s  322 (487)
                       ++|++|+..           ..+.-|.+-++..-...+...+.+..... ..        ..+   ......|..|..|
T Consensus       160 -~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS  238 (282)
T PF15492_consen  160 -RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS  238 (282)
T ss_pred             -CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence             777777641           13667776665533322222221110000 00        001   1235789999999


Q ss_pred             CCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccc
Q 011368          323 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       323 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                      |||..||+.. +|.|.+|++.+ -+....++..+
T Consensus       239 Pdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~e  271 (282)
T PF15492_consen  239 PDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDE  271 (282)
T ss_pred             CCCCEEEEEEcCCeEEEEecCc-chhhcccchhh
Confidence            9999999986 59999999976 55555555444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=5.9e-07  Score=85.70  Aligned_cols=256  Identities=16%  Similarity=0.165  Sum_probs=167.5

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .-.++.|+|.| +||.|+. ..|.+-|..+-+.                           +.++.-|.            
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~---------------------------iqsie~h~------------   55 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQL---------------------------IQSIELHQ------------   55 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhhhh---------------------------hhccccCc------------
Confidence            36789999988 6788875 4688888765543                           57778888            


Q ss_pred             cceeEEEEEecC--------C--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          114 EKINRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       114 ~~I~~v~~~~~~--------~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                      ..|+.|+|.|.+        .  .-+|+++...|.|.+||+..+..+.-                               
T Consensus        56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-------------------------------  104 (1062)
T KOG1912|consen   56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-------------------------------  104 (1062)
T ss_pred             cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-------------------------------
Confidence            889999998732        1  22456667789999999987754322                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCC---CCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNS---DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  258 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  258 (487)
                                      +..|.+++..++|-+   +.+.+..+  ...++.+|+..++++.++.        ........|
T Consensus       105 ----------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~ys~~iLs~  160 (1062)
T KOG1912|consen  105 ----------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DYSHEILSC  160 (1062)
T ss_pred             ----------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------ccCCcceee
Confidence                            467788889999854   45444444  7889999999977765542        223345677


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeec---ccccccCc-cccccc--c---------ccceeEEEEcC
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHGS-KSFFTE--I---------IASISDIKFAN  323 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~h~~~~~~-~~~~~~--~---------~~~v~~v~~s~  323 (487)
                      +.++|-.+..+...+..|.+.+.+.-.........+.|+   .|.+.+.. +..-.+  +         ......++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            999997767888888888888877654333332223332   22221100 000000  0         01123456788


Q ss_pred             CCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeC
Q 011368          324 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       324 ~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~  400 (487)
                      .-+.++-.. -..+.++|++- ..++.......+..               --+.+-|+  ...|.++-.||.+.+|-.+
T Consensus       241 ~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  241 HWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             hhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            755444433 37899999986 77777776665532               13555554  4578999999999999887


Q ss_pred             C
Q 011368          401 V  401 (487)
Q Consensus       401 ~  401 (487)
                      .
T Consensus       305 ~  305 (1062)
T KOG1912|consen  305 E  305 (1062)
T ss_pred             c
Confidence            5

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=2.7e-08  Score=90.86  Aligned_cols=251  Identities=15%  Similarity=0.165  Sum_probs=155.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|++.|..++--.+.+-+++++.|.+|++|.+...-.                    ......+.-+++.|+      
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHk------  784 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHK------  784 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhcc------
Confidence            456888888887666778899999999999999864321                    011333567888998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            .+|.++.|.  .+-+++  ++.|+.|.+||.--++......-.                               
T Consensus       785 ------k~i~~igfL--~~lr~i--~ScD~giHlWDPFigr~Laq~~da-------------------------------  823 (1034)
T KOG4190|consen  785 ------KPIHDIGFL--ADLRSI--ASCDGGIHLWDPFIGRLLAQMEDA-------------------------------  823 (1034)
T ss_pred             ------Ccccceeee--ecccee--eeccCcceeecccccchhHhhhcC-------------------------------
Confidence                  899999995  444444  456889999998766543210000                               


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                 ...+..+.|.|+- +-+...+++ | ...+|+++|.+..+..-+.   +...-.+.+..+++++..+.|
T Consensus       824 -----------pk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~---kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  824 -----------PKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCEL---KVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             -----------cccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeE---EeccCCCCchheeEEEeccCc
Confidence                       0012223343332 113344444 4 7899999999865432221   111234566778999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeCCeEEE-EeCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKL-WDIRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d~~i~i-wd~~~  343 (487)
                       +.++++-.+|.|.+.|.++|+.+    ..|..             .+.....++ .|..+.|+. +.|.++.+ |..-.
T Consensus       889 -N~lAa~LSnGci~~LDaR~G~vI----Nswrp-------------mecdllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  889 -NKLAAALSNGCIAILDARNGKVI----NSWRP-------------MECDLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             -chhhHHhcCCcEEEEecCCCcee----ccCCc-------------ccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence             99999999999999999999755    33332             012222332 255556664 45678877 87653


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEE-cCCCCEEEEEcCCCcEEEEE
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~sg~~dg~i~iwd  398 (487)
                       +......+....+.                  .| -.-|.-|+++...+.+.+|.
T Consensus       950 -gimh~q~kpppepa------------------hflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  950 -GIMHLQDKPPPEPA------------------HFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             -CeeeeccCCCCcch------------------hhhhccCceeEEeccCcEEEEEe
Confidence             44444443333221                  11 11355677777777777775

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=7.9e-09  Score=94.29  Aligned_cols=220  Identities=22%  Similarity=0.249  Sum_probs=142.4

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      +..+.||+            +.|..++-.  .+.+-+++++.|++|++|.++... ....                    
T Consensus       728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~t--------------------  773 (1034)
T KOG4190|consen  728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGT--------------------  773 (1034)
T ss_pred             eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCcccc--------------------
Confidence            34566777            778777753  456779999999999999987431 1111                    


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                          ..|.-+| ..|..+|.++.|-.+-+.++++ |+.|.+||.-.+....++.+.   .-++.
T Consensus       774 --------------------saCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a  828 (1034)
T KOG4190|consen  774 --------------------SACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGA  828 (1034)
T ss_pred             --------------------ceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCC
Confidence                                1122333 8999999999999888777665 667999997644433222211   11223


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  331 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-  331 (487)
                      ...|.|+.-- +.+-.++-++...+|+++|.+..+..    ..++. -.       -++....+++++..+.|++++++ 
T Consensus       829 ~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cn-------a~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  829 GGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWT----CELKV-CN-------APGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             CceeEecccC-cchheeeeccchhhheeeecccccce----eeEEe-cc-------CCCCchheeEEEeccCcchhhHHh
Confidence            3345555321 22133444477899999999987643    22322 00       02224678999999999999998 


Q ss_pred             eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEE-EEeCCC
Q 011368          332 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI-FSHGVG  402 (487)
Q Consensus       332 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~i-wd~~~~  402 (487)
                      +.|.|.+.|.++ ++.+..++..+.-.               ..++ .|..+.|+....|.++.+ |....+
T Consensus       896 SnGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  896 SNGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             cCCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            569999999997 77776655443211               1222 245567777778888888 887766

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.2e-07  Score=83.04  Aligned_cols=328  Identities=15%  Similarity=0.117  Sum_probs=199.2

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..-|.+.|+.+.-+ -.+++.+++.||.++.|.-....                        ..+++..+..|.      
T Consensus         5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL------   53 (558)
T KOG0882|consen    5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL------   53 (558)
T ss_pred             hhcccceeeeEeee-hhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH------
Confidence            34588888877654 45799999999999999843211                        334567777887      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccc--cccccCCCCcce
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN--FMNEHNPPSFAH  184 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  184 (487)
                            ..|.+++.  +.++.++.+.+. |..++++|+.+-.+....+...-|...++.+.+.+..  +.++........
T Consensus        54 ------~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~  125 (558)
T KOG0882|consen   54 ------GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIF  125 (558)
T ss_pred             ------HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcE
Confidence                  77888887  578888888777 9999999999877665555555555555555544332  222222333333


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEE-e--ecC----CCCCCCCCCcE
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI-V--DMK----PSNMDDLTEVI  256 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~-~--~~~----~~~~~~~~~~v  256 (487)
                      ......+..+... +-.-|..+|.++.+++-+..+++. ..|.|.-|.....-+..+. +  ..+    ...+.......
T Consensus       126 VvD~~~d~~q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  126 VVDGFGDFCQDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             EECCcCCcCccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence            3333322222222 225689999999999999999999 8999999988721110000 0  000    01122234567


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcc---------------ccccccc-cceeEEE
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---------------SFFTEII-ASISDIK  320 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~---------------~~~~~~~-~~v~~v~  320 (487)
                      .++.|+|++ ..+.+-+.|..|++++.+++++..............+...               ..+..|. ..-..+.
T Consensus       205 ts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~  283 (558)
T KOG0882|consen  205 TSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV  283 (558)
T ss_pred             cceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence            899999999 9999999999999999999886522111111100000000               0112222 2345678


Q ss_pred             EcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCC---------Ccc-eeeEEEEcCCCCEEEEEcC
Q 011368          321 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND---------SIF-DKFECSVSGDGLHFATGSY  390 (487)
Q Consensus       321 ~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~s~d~~~l~sg~~  390 (487)
                      |...|++|+-|+-=-|++.++.+ +..++.+...+..+.....++...         ... .--.+.+-+|...++++-.
T Consensus       284 fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~k  362 (558)
T KOG0882|consen  284 FDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFK  362 (558)
T ss_pred             EcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeee
Confidence            88899999988776788888886 666665543332221111111000         000 0012335566667777777


Q ss_pred             CCcEEEE
Q 011368          391 SNLLRIF  397 (487)
Q Consensus       391 dg~i~iw  397 (487)
                      .+.++++
T Consensus       363 k~rfylf  369 (558)
T KOG0882|consen  363 KNRFYLF  369 (558)
T ss_pred             cceEEEE
Confidence            7777777

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.80  E-value=2.8e-05  Score=68.73  Aligned_cols=226  Identities=14%  Similarity=0.143  Sum_probs=135.9

Q ss_pred             EEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        37 ~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      +++|.+ ++.++++--..+.|..|+..+++.                            ..+..              ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------~~~~~--------------~~   41 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------EVIDL--------------PG   41 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------EEEES--------------SS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------EEEec--------------CC
Confidence            578888 666666666788999999877642                            11111              22


Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      ...+++. .+++ .|+.+...+ +.++|..+++...+....                                       
T Consensus        42 ~~G~~~~-~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~---------------------------------------   79 (246)
T PF08450_consen   42 PNGMAFD-RPDG-RLYVADSGG-IAVVDPDTGKVTVLADLP---------------------------------------   79 (246)
T ss_dssp             EEEEEEE-CTTS-EEEEEETTC-EEEEETTTTEEEEEEEEE---------------------------------------
T ss_pred             CceEEEE-ccCC-EEEEEEcCc-eEEEecCCCcEEEEeecc---------------------------------------
Confidence            5677774 2454 555555544 555698888766553210                                       


Q ss_pred             eeeeccc-CCCceeEEEeCCCCCEEEEe-cC--------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          196 TKVYPHA-HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       196 ~~~~~~~-~~~~v~~i~~s~~~~~l~s~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                          ... .....+++++.|+|++.++. ..        +.|..++..  +......        ..-.....++|+|++
T Consensus        80 ----~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~--------~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   80 ----DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVA--------DGLGFPNGIAFSPDG  145 (246)
T ss_dssp             ----TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEE--------EEESSEEEEEEETTS
T ss_pred             ----CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEe--------cCcccccceEECCcc
Confidence                012 45668899999999988875 32        446556555  2322221        123446899999999


Q ss_pred             CCEEE-EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          266 CNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       266 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                       +.|+ +-+..+.|..+++..........+.+..          +..-.+....+++..+|++.++.- .+.|.+++.+ 
T Consensus       146 -~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-  213 (246)
T PF08450_consen  146 -KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-  213 (246)
T ss_dssp             -SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-
T ss_pred             -hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-
Confidence             6665 5567889999998754321111122211          001113478899999998777764 4999999985 


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEEE
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATG  388 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg  388 (487)
                       ++.+..+.......               ++++|. ++.+.|...
T Consensus       214 -G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  214 -GKLLREIELPVPRP---------------TNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             -SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEEE
T ss_pred             -ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEEE
Confidence             77777777652221               689994 665655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.80  E-value=1.4e-06  Score=72.78  Aligned_cols=168  Identities=13%  Similarity=0.059  Sum_probs=110.7

Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      +.++++  +++++++++.+....|.+|.++.......                                           
T Consensus       161 ~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~-------------------------------------------  195 (344)
T KOG4532|consen  161 QNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIE-------------------------------------------  195 (344)
T ss_pred             eeeeEE--cCCCceEEEecCCCcceEEEeCCccceee-------------------------------------------
Confidence            667777  68899999999999999999976543221                                           


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC-EEEEEe
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSS  273 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~  273 (487)
                       +++.....+.-.+.+|+.....+|++ .||++.|||++..+.+....   ..+.+.|.+.++.+.|++-|+. +|+..-
T Consensus       196 -~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  196 -NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCRFSLYGLLDLLFISE  271 (344)
T ss_pred             -eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEEecCCCcceEEEEec
Confidence             11123344555688899999999999 99999999999665544322   1234568999999999987643 344444


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccc-eeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-ISDIKFANDGQHLLSRDYMNLKLWDIR  342 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~s~~d~~i~iwd~~  342 (487)
                      .-+.+.+.|+++..... .+..+..         .+..|... |..-.|+.++.-+.+...-.+.=|++.
T Consensus       272 hfs~~hv~D~R~~~~~q-~I~i~~d---------~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~  331 (344)
T KOG4532|consen  272 HFSRVHVVDTRNYVNHQ-VIVIPDD---------VERKHNTQHIFGTNFNNENESNDVKNELQGAEYNIL  331 (344)
T ss_pred             CcceEEEEEcccCceee-EEecCcc---------ccccccccccccccccCCCcccccccchhhheeecc
Confidence            46789999999976431 1111111         12223333 777777777766655543344455553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=1.6e-07  Score=82.69  Aligned_cols=158  Identities=10%  Similarity=0.104  Sum_probs=98.5

Q ss_pred             eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---CCeEEEEE
Q 011368          207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVD  282 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~iwd  282 (487)
                      ...+..++.++++|.+ .+....++++....+..+.++..  .+.   ...+++.|..+. .....+..   ...+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~---~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVP---KRPTAISFIRED-TSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecc---cCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence            4455668889999999 77777777776433312221100  111   122333343333 33333333   33444444


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee-ecccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPK  360 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~  360 (487)
                      ...+.                  ....-||..-+..++|+||+++|++++ |..|++-.... ...+..+ -+|...+  
T Consensus       139 ~~~~~------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV--  197 (390)
T KOG3914|consen  139 ADSGR------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV--  197 (390)
T ss_pred             ccccC------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe--
Confidence            33221                  112345688999999999999999997 69999988764 4444444 3587766  


Q ss_pred             cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                                   ..++.-+ +..|++||.|+++++||+.+|+..
T Consensus       198 -------------S~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  198 -------------STISLTD-NYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             -------------eeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence                         3666664 456899999999999999999653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.75  E-value=1.3e-05  Score=70.20  Aligned_cols=239  Identities=17%  Similarity=0.238  Sum_probs=141.7

Q ss_pred             EEEEEEcC-CCCEEEEEecCCc-EEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           35 VSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        35 V~~~~~s~-~~~~l~~g~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      .-.++.+| ....++.+-.-|+ ..+||..+++..       ..+.-            ..-..|.||.           
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-------~~~~a------------~~gRHFyGHg-----------   56 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-------QRLWA------------PPGRHFYGHG-----------   56 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-------eEEcC------------CCCCEEecCE-----------
Confidence            44678888 5566777776665 568898888653       01100            1124566775           


Q ss_pred             ccceeEEEEEecCCCcEEEEE-----eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          113 EEKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                             .|  ++||++|++.     ...|.|-|||...+ ..++.+                                 
T Consensus        57 -------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E---------------------------------   93 (305)
T PF07433_consen   57 -------VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGE---------------------------------   93 (305)
T ss_pred             -------EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeE---------------------------------
Confidence                   56  6899999886     35678999999832 222211                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecC--------CeEEEEEccCCCceeEEeecC------CCCC--CC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADD--------LRINLWNLEISDQCFNIVDMK------PSNM--DD  251 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d--------~~i~iwd~~~~~~~~~~~~~~------~~~~--~~  251 (487)
                                  +..|.-.-..+.+.|||+.|+.+..        |..++ ++.+....+..++..      ...+  ..
T Consensus        94 ------------~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   94 ------------FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             ------------ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccc
Confidence                        2455555677889999988887522        23332 333333333222111      1234  34


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCC-------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                      |...|..++++++| ..++..-..|       .|-+++....  .    ..+..      +........+.+-+|+++++
T Consensus       161 ~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~~~~~~l~~Y~gSIa~~~~  227 (305)
T PF07433_consen  161 HQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PEEQWRRLNGYIGSIAADRD  227 (305)
T ss_pred             cccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------ChHHHHhhCCceEEEEEeCC
Confidence            77789999999998 5555443333       1333322221  1    11111      00111223568999999999


Q ss_pred             CCEEEEEe-C-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          325 GQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       325 ~~~l~s~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      +.++++.+ - +.+.+||..+ +..+........                 ..++-.+++ ++++.+..
T Consensus       228 g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  228 GRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-eEEeCCCc
Confidence            99888765 3 9999999987 777776665553                 366766666 66655543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=4.7e-05  Score=67.28  Aligned_cols=214  Identities=15%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (487)
                      ++.|.+ .++.++++-...+.|..|+..++.....                                             
T Consensus         4 gp~~d~-~~g~l~~~D~~~~~i~~~~~~~~~~~~~---------------------------------------------   37 (246)
T PF08450_consen    4 GPVWDP-RDGRLYWVDIPGGRIYRVDPDTGEVEVI---------------------------------------------   37 (246)
T ss_dssp             EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEE---------------------------------------------
T ss_pred             ceEEEC-CCCEEEEEEcCCCEEEEEECCCCeEEEE---------------------------------------------
Confidence            567742 2667777777889999999988764432                                             


Q ss_pred             eecccCCCceeEEEeC-CCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeCC
Q 011368          198 VYPHAHDFNINSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       198 ~~~~~~~~~v~~i~~s-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                         .. .. ...+++. +++ .++.+..+.+.++|..++ ....+....   ... .....+.+++.|+| .+.++....
T Consensus        38 ---~~-~~-~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g-~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~  106 (246)
T PF08450_consen   38 ---DL-PG-PNGMAFDRPDG-RLYVADSGGIAVVDPDTG-KVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGG  106 (246)
T ss_dssp             ---ES-SS-EEEEEEECTTS-EEEEEETTCEEEEETTTT-EEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred             ---ec-CC-CceEEEEccCC-EEEEEEcCceEEEecCCC-cEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCC
Confidence               11 11 6677777 565 555553344455588743 333332211   012 34567899999999 777766543


Q ss_pred             --------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCC
Q 011368          276 --------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS  345 (487)
Q Consensus       276 --------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~  345 (487)
                              |.|..++.. ++..    .....              -...+.++|+|+++.|+.++ . +.|..+++...+
T Consensus       107 ~~~~~~~~g~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~  167 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG  167 (246)
T ss_dssp             BCTTCGGSEEEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CccccccccceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccc
Confidence                    456666666 3321    22222              24568999999999887664 3 889999986433


Q ss_pred             cee---eee-ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368          346 TPV---ATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  421 (487)
Q Consensus       346 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  421 (487)
                      ..+   ..+ ......           .  ..-.+++..+|++.++.-..+.|.+++.+ | .....+.......+.++|
T Consensus       168 ~~~~~~~~~~~~~~~~-----------g--~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  168 GELSNRRVFIDFPGGP-----------G--YPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             CCEEEEEEEEE-SSSS-----------C--EEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEE
T ss_pred             cceeeeeeEEEcCCCC-----------c--CCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEE
Confidence            311   112 111110           0  01379999999988887788999999987 4 445555555446667777


Q ss_pred             e
Q 011368          422 Q  422 (487)
Q Consensus       422 ~  422 (487)
                      .
T Consensus       233 g  233 (246)
T PF08450_consen  233 G  233 (246)
T ss_dssp             E
T ss_pred             E
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.75  E-value=1.8e-07  Score=77.62  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=61.0

Q ss_pred             CceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          205 FNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      ..|.+++-+|..+.++ +| .||.+.+||.+....+.       ..+..|..+++.+.|+|..+..|+++++||.+..||
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            4489999999655554 46 99999999999543322       346789999999999999889999999999999999


Q ss_pred             ccC
Q 011368          283 MRQ  285 (487)
Q Consensus       283 ~~~  285 (487)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=1.2e-08  Score=98.15  Aligned_cols=215  Identities=15%  Similarity=0.236  Sum_probs=145.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |+...+|++|+.+.++|+.|+..|.|+++++.+|...                           ....+|.         
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~--------- 1143 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ--------- 1143 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc---------
Confidence            5678999999999999999999999999999988753                           6678898         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                         .+|+-+.=  +-+|..+++.+.  .--..+|++..-- .                                      
T Consensus      1144 ---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~-~-------------------------------------- 1179 (1516)
T KOG1832|consen 1144 ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG-G-------------------------------------- 1179 (1516)
T ss_pred             ---cccccccc--cCCcceeeeeccccCchHHHhcccccc-C--------------------------------------
Confidence               88888875  678887777543  2357789886511 0                                      


Q ss_pred             eeeccceeeeecccCC-CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          189 EWTENMATKVYPHAHD-FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  ..|. ..-.++.|+...+.-+.| ......+||+++...+...+.    ...+.+..-.+..|+|+. 
T Consensus      1180 ------------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----~~~~~~y~~n~a~FsP~D- 1242 (1516)
T KOG1832|consen 1180 ------------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----DTVTSSYSNNLAHFSPCD- 1242 (1516)
T ss_pred             ------------ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC----cchhhhhhccccccCCCc-
Confidence                        1121 234577887665555555 556788999997766544221    111222233778899997 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCc
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST  346 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~  346 (487)
                      .+++   .||  .+||.+..+.+    +.|...              ..--.-.|+|+|..++.-+.    |||+++ .+
T Consensus      1243 ~LIl---ndG--vLWDvR~~~aI----h~FD~f--------------t~~~~G~FHP~g~eVIINSE----IwD~RT-F~ 1294 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAI----HRFDQF--------------TDYGGGGFHPSGNEVIINSE----IWDMRT-FK 1294 (1516)
T ss_pred             ceEe---eCc--eeeeeccHHHH----hhhhhh--------------eecccccccCCCceEEeech----hhhhHH-HH
Confidence            6664   455  48999986544    555541              11123368999998887654    999998 77


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  387 (487)
                      .+.....-..                 ..+.|+..|..++.
T Consensus      1295 lLh~VP~Ldq-----------------c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ-----------------CAVTFNSTGDVMYA 1318 (1516)
T ss_pred             HHhcCccccc-----------------eEEEeccCccchhh
Confidence            6666554443                 36788877776553

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=2.8e-06  Score=81.23  Aligned_cols=372  Identities=14%  Similarity=0.125  Sum_probs=198.1

Q ss_pred             ccCcEEEEEEcCCC------------CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec
Q 011368           31 DVDIVSAIEFDKTG------------DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ   98 (487)
Q Consensus        31 h~~~V~~~~~s~~~------------~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (487)
                      |...|+.+.|.|-.            -+||+++..|.|.+||...+..                           +..+.
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------------------~~~l~  106 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------------------INWLS  106 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------------------hhhhc
Confidence            67889999998721            3678888999999999887654                           24566


Q ss_pred             CCCcccccccccccccceeEEEEEecCCCc--EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc-------
Q 011368           99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-------  169 (487)
Q Consensus        99 ~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  169 (487)
                      .|.            .+|..++|.+..+..  .|++-....++.+|+..+|+........... ..|+.+-+=       
T Consensus       107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i-Ls~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen  107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI-LSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc-eeeeeeCCCCcceEEE
Confidence            666            889999998755543  5556667789999999888765443322211 111222221       


Q ss_pred             ---ccccccccCCCC-----cceeeeee----------------------------------------ee----------
Q 011368          170 ---EKNFMNEHNPPS-----FAHGYHLE----------------------------------------WT----------  191 (487)
Q Consensus       170 ---~~~~~~~~~~~~-----~~~~~~~~----------------------------------------~~----------  191 (487)
                         .+.++.....+.     ........                                        |.          
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence               111111111000     00000000                                        00          


Q ss_pred             -------ccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC-CCCCcE----
Q 011368          192 -------ENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVI----  256 (487)
Q Consensus       192 -------~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v----  256 (487)
                             -..++... .-..+.+.-+.+-|+  ...|++. .||.+.+|-.+.......+-   ...+. .....+    
T Consensus       254 llv~dle~~~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---~~~l~~dl~~Q~~~vr  329 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---NASLSMDLGEQVHVVR  329 (1062)
T ss_pred             eEEEcchhhceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc---chhhccccccceEEEe
Confidence                   01111111 111223334455554  4567777 99999999876422222110   00000 001111    


Q ss_pred             -------EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce-------eecccccccC--cccc------cccccc
Q 011368          257 -------TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-------ILRDAAESHG--SKSF------FTEIIA  314 (487)
Q Consensus       257 -------~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~h~~~~~--~~~~------~~~~~~  314 (487)
                             ......|..+..++.--.+|.+.+|.+.+++.......       .|.- ...+.  .+..      ..+|..
T Consensus       330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f-~~~~~~v~k~~l~~LS~dg~h~s  408 (1062)
T KOG1912|consen  330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDF-NLSTKLVGKTSLISLSDDGSHSS  408 (1062)
T ss_pred             echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccc-cCceeehhhccccchhhcCCCCC
Confidence                   12222344334555556678888999987653211000       0000 00000  0000      123555


Q ss_pred             ceeEEEEcC-----------CCC-------EEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE
Q 011368          315 SISDIKFAN-----------DGQ-------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  375 (487)
Q Consensus       315 ~v~~v~~s~-----------~~~-------~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (487)
                      ...+....|           -|+       +++.|.. |+|.++|+.+ +.....+..|...+               .+
T Consensus       409 Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst-~~v~~~fsvht~~V---------------kg  472 (1062)
T KOG1912|consen  409 GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST-NAVAASFSVHTSLV---------------KG  472 (1062)
T ss_pred             CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc-hhhhhhhcccccce---------------ee
Confidence            555444332           222       4556765 9999999987 77778888888765               35


Q ss_pred             EEEcCCCCEE---------EEEcCCCcEEEEEeCCCCceeEE--EeccCCccccceEeeCCccccccccceeeecccce-
Q 011368          376 CSVSGDGLHF---------ATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-  443 (487)
Q Consensus       376 ~~~s~d~~~l---------~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-  443 (487)
                      +.|-.+.+++         ++|+.-+.+.|-|+.+|......  .+....+|+.+..+.  -+++     ++..-++.- 
T Consensus       473 leW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~--~~~y-----Lai~Fr~~pl  545 (1062)
T KOG1912|consen  473 LEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS--SGRY-----LAILFRREPL  545 (1062)
T ss_pred             eeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc--cCce-----EEEEecccch
Confidence            5555444332         24555567889999998543222  234456777777665  5566     777777777 


Q ss_pred             ecCCCC-CccccccccCCC-eEEEEEc-CC
Q 011368          444 HENSSS-GHHELSYNLSSK-LLHLAWH-PT  470 (487)
Q Consensus       444 ~~w~~~-~~~~~~~~~~~~-v~~~~~s-pd  470 (487)
                      .+|... ..........-+ |+.+.|+ |.
T Consensus       546 Eiwd~kt~~~lr~mS~a~P~it~leWsl~~  575 (1062)
T KOG1912|consen  546 EIWDLKTLRMLRLMSLALPLITVLEWSLPK  575 (1062)
T ss_pred             HHHhhccchHHHHHhhcCCcEEEEeecccC
Confidence            899552 222222233335 8899999 44

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=6.1e-08  Score=83.52  Aligned_cols=132  Identities=12%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC----CceeEEeecCCCCCCCCCCcEEEEEEec-CCCCEEEEEeCCC
Q 011368          203 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG  276 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg  276 (487)
                      ..+.|.++.|...++++..| .+|.|..+|++..    +.+...        --|.+.|+++..-. ++ ++|++.+.+|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--------lyh~Ssvtslq~Lq~s~-q~LmaS~M~g  321 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--------LYHDSSVTSLQILQFSQ-QKLMASDMTG  321 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--------EEcCcchhhhhhhcccc-ceEeeccCcC
Confidence            56778999999888999999 9999999999854    222221        24888899988766 45 8899999999


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeeccc
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                      +|.+||++.-+. ...++.+++|....           .-.-+...+....++++ +|...|||.++. +..+.+++...
T Consensus       322 kikLyD~R~~K~-~~~V~qYeGHvN~~-----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~  388 (425)
T KOG2695|consen  322 KIKLYDLRATKC-KKSVMQYEGHVNLS-----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY  388 (425)
T ss_pred             ceeEeeehhhhc-ccceeeeecccccc-----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence            999999997653 22346777762211           11122334555566654 569999999997 88888877554


Q ss_pred             c
Q 011368          356 H  356 (487)
Q Consensus       356 ~  356 (487)
                      .
T Consensus       389 s  389 (425)
T KOG2695|consen  389 S  389 (425)
T ss_pred             c
Confidence            3

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.71  E-value=8.8e-06  Score=77.06  Aligned_cols=153  Identities=13%  Similarity=0.069  Sum_probs=85.4

Q ss_pred             CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC--Cc---E-EEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368          217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---v-~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      ..++.+ .++.+..+|.+++....+.- ..  ...+..  ..   + .+..+  .+ ..+++++.+|.+..+|.++++..
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~-~~--~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~  264 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQR-VA--LPKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL  264 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeec-cc--cCCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEE
Confidence            356666 78888888887554433210 00  000000  00   0 11112  23 57888888999999999988633


Q ss_pred             cccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCC
Q 011368          290 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND  368 (487)
Q Consensus       290 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (487)
                            +.. .            .........  ++..++.+ .+|.+..+|..+ ++.+..........          
T Consensus       265 ------W~~-~------------~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~----------  312 (377)
T TIGR03300       265 ------WKR-D------------ASSYQGPAV--DDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQ----------  312 (377)
T ss_pred             ------Eee-c------------cCCccCceE--eCCEEEEECCCCeEEEEECCC-CcEEEccccccCCc----------
Confidence                  322 0            001112222  34455555 469999999986 66654442211100          


Q ss_pred             CcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          369 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       369 ~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                       .   .+...  .+..|++++.+|.|+++|..+++. ...++.+..
T Consensus       313 -~---ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~-~~~~~~~~~  351 (377)
T TIGR03300       313 -L---TAPAV--VGGYLVVGDFEGYLHWLSREDGSF-VARLKTDGS  351 (377)
T ss_pred             -c---ccCEE--ECCEEEEEeCCCEEEEEECCCCCE-EEEEEcCCC
Confidence             0   12222  456889999999999999998844 556665554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.70  E-value=8.5e-06  Score=71.74  Aligned_cols=198  Identities=15%  Similarity=0.084  Sum_probs=108.8

Q ss_pred             CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF  205 (487)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (487)
                      ++..+++++.++.+..||..+|+.........                                                
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~------------------------------------------------   66 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG------------------------------------------------   66 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSS------------------------------------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc------------------------------------------------
Confidence            46678888899999999999998765532211                                                


Q ss_pred             ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368          206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  284 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~  284 (487)
                      .+...... ++..++.+ .++.++.+|..++....+.....   .+... ..........+ ..++++..++.|..+|++
T Consensus        67 ~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~  140 (238)
T PF13360_consen   67 PISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPK  140 (238)
T ss_dssp             CGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETT
T ss_pred             cccceeee-cccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecC
Confidence            11000111 24455555 78899999988666655522111   01111 11222222235 788888889999999999


Q ss_pred             CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCe-EEEEeCCCCCceeeeeeccccccccccc
Q 011368          285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      +|+.+    -.... ...+.. ..+. ....+..-....++..+++..++. +.+ |+.+ ++.+.... ....      
T Consensus       141 tG~~~----w~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~------  204 (238)
T PF13360_consen  141 TGKLL----WKYPV-GEPRGS-SPIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI------  204 (238)
T ss_dssp             TTEEE----EEEES-STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E------
T ss_pred             CCcEE----EEeec-CCCCCC-ccee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc------
Confidence            99754    22222 000000 0000 001122222233453444444564 555 9987 65443222 1111      


Q ss_pred             ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          364 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                                 ......++..|+.++.++.|..||+++++.
T Consensus       205 -----------~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  205 -----------YSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -----------CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             -----------cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence                       122456777888888999999999999944

...

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.63  E-value=3e-05  Score=72.42  Aligned_cols=286  Identities=10%  Similarity=0.079  Sum_probs=135.5

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+....|  +|+|+.++... ++.|.+++..++...++.... ...+.                .+      ...|--.
T Consensus        43 ~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~----------------nG------~~dwvye   96 (353)
T PF00930_consen   43 PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIY----------------NG------VPDWVYE   96 (353)
T ss_dssp             TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEE----------------ES------B--HHHH
T ss_pred             ccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEE----------------cC------ccceecc
Confidence            56888999  57898888875 578999998877555442211 11000                00      0000000


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             ..--+.-..+-||||++.|+..  ++..|..+.+..-...           ......+..+.+-.-| .-...
T Consensus        97 -------EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-----------~~~yp~~~~~~YPk~G-~~np~  157 (353)
T PF00930_consen   97 -------EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-----------DSQYPEVESIRYPKAG-DPNPR  157 (353)
T ss_dssp             -------HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-----------TESS-EEEEEE--BTT-S---E
T ss_pred             -------ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCc-----------cccCCcccccccCCCC-CcCCc
Confidence                   0001223578899999999986  6766666554311110           0000123444443333 22211


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE-e-C---CeEEEEeCCCCC
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-D-Y---MNLKLWDIRMDS  345 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~-d---~~i~iwd~~~~~  345 (487)
                      .    .+.++|+.+++..     .+.. ..      ....-...+..+.|.++++ +++.- + +   -.+.+.|..+ +
T Consensus       158 v----~l~v~~~~~~~~~-----~~~~-~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g  220 (353)
T PF00930_consen  158 V----SLFVVDLASGKTT-----ELDP-PN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-G  220 (353)
T ss_dssp             E----EEEEEESSSTCCC-----EE----H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-T
T ss_pred             e----EEEEEECCCCcEE-----Eeee-cc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-C
Confidence            1    4677888877532     1111 00      0011146789999999998 44432 2 2   4566677765 3


Q ss_pred             ceeeeee-cccccccccccccCCCCcceeeEEEEc-CCCC-EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          346 TPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS-GDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       346 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      ....... .....+..            .....|. +++. +|.....||.-+||-+.........+....-.|..+...
T Consensus       221 ~~~~~~~e~~~~Wv~~------------~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~  288 (353)
T PF00930_consen  221 ETRVVLEETSDGWVDV------------YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGW  288 (353)
T ss_dssp             TCEEEEEEESSSSSSS------------SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEE
T ss_pred             ceeEEEEecCCcceee------------ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceE
Confidence            3322222 22222210            0245554 5554 444555777666666655444444555445555443333


Q ss_pred             eCCccccccccceeeeccc--ce-ecC--CCC-CccccccccCCCe-EEEEEcCCCCEEEEec
Q 011368          423 AAPRARRSSLSNLTRGLYR--QA-HEN--SSS-GHHELSYNLSSKL-LHLAWHPTTNLIACAN  478 (487)
Q Consensus       423 ~~~~~~~~~~~~l~~g~~~--~~-~~w--~~~-~~~~~~~~~~~~v-~~~~~spd~~~la~~s  478 (487)
                      ......+     ..++..+  .. ++|  +.. ............. ..++|||++++++..+
T Consensus       289 d~~~~~i-----yf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  289 DEDNNRI-----YFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             ECTSSEE-----EEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             cCCCCEE-----EEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            3223333     3444432  23 666  222 1222222222222 5899999999988544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=5.4e-08  Score=93.90  Aligned_cols=201  Identities=13%  Similarity=0.191  Sum_probs=141.2

Q ss_pred             ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      ++..++|+.|.            ...+|++|  +.+.++|+.|+..|.|+++++.+|.....                  
T Consensus      1091 Fr~w~~frd~~------------~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s------------------ 1138 (1516)
T KOG1832|consen 1091 FRSWRSFRDET------------ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES------------------ 1138 (1516)
T ss_pred             cccchhhhccc------------cceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc------------------
Confidence            44566677777            88999999  46778999999999999999999976543                  


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCC-eEEEEEccCCCceeEEeecCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMKPS  247 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~-~i~iwd~~~~~~~~~~~~~~~~  247 (487)
                                                   ..+|...|+.+.-+.+|..+.+.  ... -..+|++........       
T Consensus      1139 -----------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~H------- 1182 (1516)
T KOG1832|consen 1139 -----------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRH------- 1182 (1516)
T ss_pred             -----------------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCccc-------
Confidence                                         37999999999999999888775  333 567999885443221       


Q ss_pred             CCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE
Q 011368          248 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  327 (487)
Q Consensus       248 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~  327 (487)
                      ++    ..-.++.|+... +.-+.|.......+||++++..+...   +.+ .         .+....-+...|+|+..+
T Consensus      1183 sf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~-~---------~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1183 SF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY---LTD-T---------VTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             cc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHh---cCc-c---------hhhhhhccccccCCCcce
Confidence            11    234678888765 55566666667899999998765321   222 0         001223367889999887


Q ss_pred             EEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          328 LLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       328 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ++-    .=.+||++. ...+..|......                ..-.|+|.|..++.-+.     |||+++-+
T Consensus      1245 Iln----dGvLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1245 ILN----DGVLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred             Eee----Cceeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhhhHHHH
Confidence            763    224899987 4555555433322                15679999999887665     89998863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=3.1e-06  Score=81.43  Aligned_cols=193  Identities=16%  Similarity=0.184  Sum_probs=129.2

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      .+...+.++|++++  +++|+-|..+|.|++.+.+...                             .+...|.      
T Consensus        35 ~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s------   77 (846)
T KOG2066|consen   35 NFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS------   77 (846)
T ss_pred             HHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc------
Confidence            44457789999987  5799999999999999976541                             2233343      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..        ..+|.++++|+.||.|.|-.+.+.+....                                   
T Consensus        78 ------~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~-----------------------------------  108 (846)
T KOG2066|consen   78 ------SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQ-----------------------------------  108 (846)
T ss_pred             ------cc--------ccCCceEEEecCCCcEEEeeccCCcccee-----------------------------------
Confidence                  11        35799999999999999998877664432                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC-----CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                   .....++.+++++|+     .+.+++| ..| +.++.-+--+....+      .+..-.++|.++.|
T Consensus       109 -------------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen  109 -------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGEGPIHSIKW  168 (846)
T ss_pred             -------------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCccceEEEEe
Confidence                         234567889999997     6678887 666 777765433322221      24456688999999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368          262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  341 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~  341 (487)
                      .  | ++||-++.+| |++||+..++.+    ...+. +. ...+.     +..-..+.|.++.+ |+.|=..+|+|..+
T Consensus       169 ~--g-~lIAWand~G-v~vyd~~~~~~l----~~i~~-p~-~~~R~-----e~fpphl~W~~~~~-LVIGW~d~v~i~~I  232 (846)
T KOG2066|consen  169 R--G-NLIAWANDDG-VKVYDTPTRQRL----TNIPP-PS-QSVRP-----ELFPPHLHWQDEDR-LVIGWGDSVKICSI  232 (846)
T ss_pred             c--C-cEEEEecCCC-cEEEecccccee----eccCC-CC-CCCCc-----ccCCCceEecCCCe-EEEecCCeEEEEEE
Confidence            7  4 7899998887 899999987644    22222 11 11111     22334678887664 44553347888877


Q ss_pred             C
Q 011368          342 R  342 (487)
Q Consensus       342 ~  342 (487)
                      +
T Consensus       233 ~  233 (846)
T KOG2066|consen  233 K  233 (846)
T ss_pred             e
Confidence            6

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.53  E-value=2.2e-07  Score=55.29  Aligned_cols=32  Identities=19%  Similarity=0.511  Sum_probs=30.2

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~   60 (487)
                      ..|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35899999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4.6e-06  Score=74.80  Aligned_cols=218  Identities=20%  Similarity=0.188  Sum_probs=138.1

Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      +.+.|+.+.-   .-.+++.+++.||.++.|.-..-....+.                                      
T Consensus         8 hrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfV--------------------------------------   46 (558)
T KOG0882|consen    8 HRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFV--------------------------------------   46 (558)
T ss_pred             ccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeeh--------------------------------------
Confidence            3366777765   34578999999999999976542222221                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC-CE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NL  268 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~  268 (487)
                           + .+..|...|.+++.+-++.++.+. . |..++++|++.-. ....+     ++.-..+.+.++ .+|... ..
T Consensus        47 -----K-hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D-minmi-----KL~~lPg~a~wv-~skGd~~s~  113 (558)
T KOG0882|consen   47 -----K-HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD-MINMI-----KLVDLPGFAEWV-TSKGDKISL  113 (558)
T ss_pred             -----h-hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc-hhhhc-----ccccCCCceEEe-cCCCCeeee
Confidence                 1 136788899999999999999996 5 9999999998433 22221     122222332222 223211 13


Q ss_pred             EEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCC--
Q 011368          269 LAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD--  344 (487)
Q Consensus       269 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~--  344 (487)
                      ++++. .++.+.++|-.......   ..+.+            -|..+|..+.+++.+..+++.+. |.|.-|....+  
T Consensus       114 IAVs~~~sg~i~VvD~~~d~~q~---~~fkk------------lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q  178 (558)
T KOG0882|consen  114 IAVSLFKSGKIFVVDGFGDFCQD---GYFKK------------LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ  178 (558)
T ss_pred             EEeecccCCCcEEECCcCCcCcc---ceecc------------cccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence            44443 47899999987654221   22222            35789999999999999988864 99999987621  


Q ss_pred             ---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          345 ---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       345 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                         .+....++....    +..+...-.  ...++.|+|+|..+.+-+.|..|+++++++|+.
T Consensus       179 fPr~~l~~~~K~eTd----Ly~f~K~Kt--~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  179 FPRTNLNFELKHETD----LYGFPKAKT--EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             Cccccccccccccch----hhccccccc--CccceEEccccCcccccCcccEEEEEEeccchh
Confidence               111111211110    000000011  125899999999999999999999999999844

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=7.7e-07  Score=76.95  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=109.5

Q ss_pred             CCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368          216 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  295 (487)
Q Consensus       216 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  295 (487)
                      +-.+++|.+..|-+-|++++-+.         .+. ..+.|.++.|...+ +++..|..+|.|..+|++.+..-    ..
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~  289 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG  289 (425)
T ss_pred             eeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence            44444557778888888854331         233 45678899999888 89999999999999999975211    11


Q ss_pred             ecccccccCccccccccccceeEEEEcC-CCCEEEEE-eCCeEEEEeCCCCCce---eeeeecccccccccccccCCCCc
Q 011368          296 LRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR-DYMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSI  370 (487)
Q Consensus       296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  370 (487)
                      +..|         .--|...|+++..-. ++++|++. .+|.|++||++. .++   +..+.+|.+....          
T Consensus       290 ~~a~---------rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~----------  349 (425)
T KOG2695|consen  290 WCAQ---------RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY----------  349 (425)
T ss_pred             cceE---------EEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc----------
Confidence            1110         112467888887665 56666665 469999999986 555   7888888764321          


Q ss_pred             ceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          371 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       371 ~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                         .-+...+....++++++|-..+||.+..+.. +.+++
T Consensus       350 ---l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-l~tip  385 (425)
T KOG2695|consen  350 ---LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-LCTIP  385 (425)
T ss_pred             ---cccccccccceEEEccCeeEEEEEecccCce-eeccC
Confidence               2466777788899999999999999998843 44443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=6.9e-07  Score=53.12  Aligned_cols=38  Identities=29%  Similarity=0.790  Sum_probs=34.2

Q ss_pred             eeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 011368           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (487)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd  143 (487)
                      +++.++++|.            +.|.+|+|+  |++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~------------~~i~~i~~~--~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS------------SSINSIAWS--PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS------------SSEEEEEEE--TTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC------------CcEEEEEEe--cccccceeeCCCCEEEEEC
Confidence            3578899999            999999995  6789999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=8e-05  Score=72.61  Aligned_cols=214  Identities=14%  Similarity=0.228  Sum_probs=131.8

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .|+|  |++.+..+|.|+.+|.|.+.+-                            ..+....++++.            
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~----------------------------s~~~~~~fqa~~------------   64 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS----------------------------SFQLIRGFQAYE------------   64 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc----------------------------cceeeehheecc------------
Confidence            4544  5688889999999999988873                            223346677776            


Q ss_pred             cc-eeEEEEEecCCC-cEEEEEeCCC-----cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          114 EK-INRVRWCAAPNG-SMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       114 ~~-I~~v~~~~~~~~-~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                      .. |..+..   .++ .+|++.+.|+     .+++|+++.-+....      |                           
T Consensus        65 ~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s------P---------------------------  108 (933)
T KOG2114|consen   65 QSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS------P---------------------------  108 (933)
T ss_pred             hhhhhHhhc---ccCceEEEEEeecCCCCceEEEEecccccCCCCC------c---------------------------
Confidence            44 333332   333 5677766554     489999875421100      0                           


Q ss_pred             eeeeecccee---eee---cccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC-CceeEEeecCCCCCCCCCCcEEE
Q 011368          187 HLEWTENMAT---KVY---PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITS  258 (487)
Q Consensus       187 ~~~~~~~~~~---~~~---~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~  258 (487)
                             .+.   +.+   ......++.+++.+.+-+.+|+| .+|.|..+.=+-. .+..+.     .-...-..+|+.
T Consensus       109 -------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITg  176 (933)
T KOG2114|consen  109 -------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITG  176 (933)
T ss_pred             -------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCcee
Confidence                   011   111   12346778899999999999999 9999998842210 111111     011234568999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEE
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  338 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~i  338 (487)
                      +++..++ +..+.......|.+|.+......   .+....             |...+.|..+++....++++....+.+
T Consensus       177 L~~~~d~-~s~lFv~Tt~~V~~y~l~gr~p~---~~~ld~-------------~G~~lnCss~~~~t~qfIca~~e~l~f  239 (933)
T KOG2114|consen  177 LALRSDG-KSVLFVATTEQVMLYSLSGRTPS---LKVLDN-------------NGISLNCSSFSDGTYQFICAGSEFLYF  239 (933)
T ss_pred             eEEecCC-ceeEEEEecceeEEEEecCCCcc---eeeecc-------------CCccceeeecCCCCccEEEecCceEEE
Confidence            9999888 55344444557899998854311   122333             356788999987666566666689999


Q ss_pred             EeCCCCCceeeeee-ccc
Q 011368          339 WDIRMDSTPVATFK-IHE  355 (487)
Q Consensus       339 wd~~~~~~~~~~~~-~~~  355 (487)
                      |+... ..+-..+. ++.
T Consensus       240 Y~sd~-~~~cfaf~~g~k  256 (933)
T KOG2114|consen  240 YDSDG-RGPCFAFEVGEK  256 (933)
T ss_pred             EcCCC-cceeeeecCCCe
Confidence            99874 44444454 444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=7.7e-06  Score=78.81  Aligned_cols=163  Identities=11%  Similarity=0.002  Sum_probs=108.4

Q ss_pred             CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      ...+.|++++  +++|+-| .+|.|++.+... .. ..        ...|...      ..+| .++++|+.||+|.|-.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~--------~~~~s~~------~~~G-ey~asCS~DGkv~I~s   99 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KT--------NFDHSSS------ILEG-EYVASCSDDGKVVIGS   99 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-cc--------ccccccc------ccCC-ceEEEecCCCcEEEee
Confidence            3556777776  7899999 999999999873 21 11        1233333      5678 9999999999999998


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCC-----CCEEEEEeC-CeEEEEeCCCCCceeee-eeccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHE  355 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~s~~d-~~i~iwd~~~~~~~~~~-~~~~~  355 (487)
                      +-+.+..    ..+.-              ..++.+++++|+     .+.+++|+. | +.++.-+.-+..... +....
T Consensus       100 l~~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen  100 LFTDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             ccCCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            8887654    44443              358999999998     456777776 6 888765432222222 33333


Q ss_pred             ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                      +++               .++.|  .|.+||-++++| |+|||+.+++. +..++.....++.-.|.|
T Consensus       161 G~I---------------~~i~W--~g~lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpp  209 (846)
T KOG2066|consen  161 GPI---------------HSIKW--RGNLIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPP  209 (846)
T ss_pred             cce---------------EEEEe--cCcEEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCC
Confidence            332               58888  478999888886 89999988743 333333334444444433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.45  E-value=7.8e-08  Score=89.67  Aligned_cols=208  Identities=15%  Similarity=0.169  Sum_probs=137.3

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.|+++....+...++.|..+|.|-+-.+....-.                                           
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------------------------   93 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------------------------   93 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------------------------
Confidence            5577888765445467788889999988877543211                                           


Q ss_pred             ceeeeecccCCCceeEEEeCC-CCCEEEEe-c----CCeEEEEEccCCCc-eeEEeecCCCCCCC-CCCcEEEEEEecCC
Q 011368          194 MATKVYPHAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISDQ-CFNIVDMKPSNMDD-LTEVITSAEFHPIY  265 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~-~~~~v~~v~~~p~~  265 (487)
                        -..+..++...+++++|++ |.+.||+| .    |..+.|||+.+.-. +.+.     ..+.+ ......+++|..+.
T Consensus        94 --s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~  166 (783)
T KOG1008|consen   94 --SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT  166 (783)
T ss_pred             --cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc
Confidence              0112478889999999988 67888887 3    67899999985311 1111     11222 33445688888887


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEeCCeEEEEe-CCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWD-IRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~d~~i~iwd-~~~  343 (487)
                       +++++|...+.+.++|++......   ..+.               +..+..+...| .+.|+++-.|+.|.+|| .+.
T Consensus       167 -klvlaGm~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rn  227 (783)
T KOG1008|consen  167 -KLVLAGMTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRN  227 (783)
T ss_pred             -chhhcccccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceeccccCceeeccchhh
Confidence             889999999999999999643211   1111               24677888888 78899888899999999 443


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCC-CcEEEEEeCC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS-NLLRIFSHGV  401 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~d-g~i~iwd~~~  401 (487)
                      -..++..+.......++           .+..++|.|... .+++...| ++|+++++..
T Consensus       228 ienpl~~i~~~~N~~~~-----------~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  228 IENPLQIILRNENKKPK-----------QLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hccHHHHHhhCCCCccc-----------ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            34445444433332211           125899999432 45555544 7899999864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=1.8e-05  Score=76.78  Aligned_cols=108  Identities=15%  Similarity=0.312  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCEEEEEe----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           36 SAIEFDKTGDYLAVGD----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      +-..|+|...++|.++    ..|+|.||- ++|+..                         ...+..             
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq-------------------------r~Vt~P-------------   59 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ-------------------------RDVTYP-------------   59 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC-------------------------cccccc-------------
Confidence            3457999999998886    568899885 444421                         001112             


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        -.+++++|+  |..-.|+.|-.-|.+.+|...+.+....                                       
T Consensus        60 --~hatSLCWH--pe~~vLa~gwe~g~~~v~~~~~~e~htv---------------------------------------   96 (1416)
T KOG3617|consen   60 --VHATSLCWH--PEEFVLAQGWEMGVSDVQKTNTTETHTV---------------------------------------   96 (1416)
T ss_pred             --eehhhhccC--hHHHHHhhccccceeEEEecCCceeeee---------------------------------------
Confidence              224679996  4555677777889999999877664433                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEcc
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  233 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~  233 (487)
                              ...|..+|..+.||++|..++++ .-|.+.+|...
T Consensus        97 --------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 --------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             --------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence                    36899999999999999999999 99999999877

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.43  E-value=8.9e-05  Score=65.14  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=74.0

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cCCe-------EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DDLR-------INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                      .-|.-.|+.+++.++|..++.. ..+.       |-+++..   ..+..+..+......-...+-+|++++++ ..+++.
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~t  234 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVT  234 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEE
Confidence            3467789999999999888876 4433       3333332   22333333322334455778999999998 766555


Q ss_pred             e-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368          273 S-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  340 (487)
Q Consensus       273 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd  340 (487)
                      + ..+.+.+||..+++++    .....               ..+..++-.+++ ++++...|.+....
T Consensus       235 sPrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             CCCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence            5 5789999999998754    22222               346667777766 66665556644433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.41  E-value=0.00023  Score=72.21  Aligned_cols=236  Identities=16%  Similarity=0.136  Sum_probs=133.9

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      +.|.++.|..+.+-++.+..+|.|.+-|..+...                             ..-|.-           
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v-----------  108 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV-----------  108 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence            5799999999999999999999999988776642                             222222           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee--
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW--  190 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  190 (487)
                      +..|.+++|  +||++.++..+.++++.+-.-.- ..+.......        -..+.+.++..+............-  
T Consensus       109 d~GI~aasw--S~Dee~l~liT~~~tll~mT~~f-~~i~E~~L~~--------d~~~~sk~v~VGwGrkeTqfrgs~gr~  177 (1265)
T KOG1920|consen  109 DNGISAASW--SPDEELLALITGRQTLLFMTKDF-EPIAEKPLDA--------DDERKSKFVNVGWGRKETQFRGSEGRQ  177 (1265)
T ss_pred             cCceEEEee--cCCCcEEEEEeCCcEEEEEeccc-cchhcccccc--------ccccccccceecccccceeeecchhhh
Confidence            278999999  68999999999888887754311 1111100000        0001111111111111110000000  


Q ss_pred             ec-cceeeeecc---cCCCceeEEEeCCCCCEEEEe-----cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          191 TE-NMATKVYPH---AHDFNINSISNNSDCETFVSA-----DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       191 ~~-~~~~~~~~~---~~~~~v~~i~~s~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                      -. .........   ...+.=+.|.|--||+++|+.     .+ +.|++||.+ +.. -.       .-+...+.-.+++
T Consensus       178 ~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns-------~se~~~~l~~~Ls  248 (1265)
T KOG1920|consen  178 AARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NS-------TSEPVEGLQHSLS  248 (1265)
T ss_pred             cccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hc-------ccCccccccccee
Confidence            00 000000000   122333578999999999882     34 899999988 321 11       0112223346799


Q ss_pred             EecCCCCEEEEEe---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE---eC-
Q 011368          261 FHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-  333 (487)
Q Consensus       261 ~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~---~d-  333 (487)
                      |-|.| ..+++-.   .|+.|.+|.-+.-+ -    ..|..         .++.....|..++|+.++..|+.-   .. 
T Consensus       249 WkPsg-s~iA~iq~~~sd~~IvffErNGL~-h----g~f~l---------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~  313 (1265)
T KOG1920|consen  249 WKPSG-SLIAAIQCKTSDSDIVFFERNGLR-H----GEFVL---------PFPLDEKEVEELAWNSNSDILAVVTSNLEN  313 (1265)
T ss_pred             ecCCC-CeEeeeeecCCCCcEEEEecCCcc-c----ccccc---------CCcccccchheeeecCCCCceeeeeccccc
Confidence            99999 8888764   35678888754321 1    11111         011123459999999999999873   23 


Q ss_pred             CeEEEEeCCC
Q 011368          334 MNLKLWDIRM  343 (487)
Q Consensus       334 ~~i~iwd~~~  343 (487)
                      ..|++|-+..
T Consensus       314 ~~v~lwt~~N  323 (1265)
T KOG1920|consen  314 SLVQLWTTGN  323 (1265)
T ss_pred             ceEEEEEecC
Confidence            4599998764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.40  E-value=0.00032  Score=71.29  Aligned_cols=226  Identities=12%  Similarity=0.092  Sum_probs=137.8

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.++.|.  .+...++.+..+|.|.+-|..+......                                         
T Consensus        69 ~~i~s~~fl--~d~~~i~v~~~~G~iilvd~et~~~eiv-----------------------------------------  105 (1265)
T KOG1920|consen   69 DEIVSVQFL--ADTNSICVITALGDIILVDPETLELEIV-----------------------------------------  105 (1265)
T ss_pred             cceEEEEEe--cccceEEEEecCCcEEEEcccccceeee-----------------------------------------
Confidence            579999995  5677788888899999988877765433                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEcc----CCCce----------eEEe-ecCCCCCC-------
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE----ISDQC----------FNIV-DMKPSNMD-------  250 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~----~~~~~----------~~~~-~~~~~~~~-------  250 (487)
                             ..-...|.+++|+||++.++.. .++++.+-.-.    .....          +++= .-+...+.       
T Consensus       106 -------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~  178 (1265)
T KOG1920|consen  106 -------GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQA  178 (1265)
T ss_pred             -------eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhc
Confidence                   3456789999999999999888 76777654331    01110          0000 00000000       


Q ss_pred             -----------C---CCCcEEEEEEecCCCCEEEEEe-----CCCeEEEEEccCCccccccceeecccccccCccccccc
Q 011368          251 -----------D---LTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  311 (487)
Q Consensus       251 -----------~---~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  311 (487)
                                 +   ..+.-+++.|--+| .++|+..     ..+.|++||.+ +.+-     ....       +     
T Consensus       179 ~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Ln-----s~se-------~-----  239 (1265)
T KOG1920|consen  179 ARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALN-----STSE-------P-----  239 (1265)
T ss_pred             ccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhh-----cccC-------c-----
Confidence                       0   11123468999999 9998843     23799999987 4321     1000       0     


Q ss_pred             cccceeEEEEcCCCCEEEEE----eCCeEEEEeCCCCCceeeee--ecccccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368          312 IIASISDIKFANDGQHLLSR----DYMNLKLWDIRMDSTPVATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  385 (487)
Q Consensus       312 ~~~~v~~v~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  385 (487)
                      -.+.=.+++|-|.|..+++-    +++.|.+|.-+  +-....+  +......         .    +..++|+.++..|
T Consensus       240 ~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~~p~de~---------~----ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  240 VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLPFPLDEK---------E----VEELAWNSNSDIL  304 (1265)
T ss_pred             ccccccceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccCCccccc---------c----hheeeecCCCCce
Confidence            02334678999999999973    34789999864  2222222  1111111         0    2489999999999


Q ss_pred             EE---EcCCCcEEEEEeCCCCce-eEEEeccCCccccceEeeCC
Q 011368          386 AT---GSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       386 ~s---g~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~  425 (487)
                      |+   ......|++|-+.+-... ++.+.......  +.|.|..
T Consensus       305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~  346 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVT  346 (1265)
T ss_pred             eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCC
Confidence            87   555556999999876432 34444443332  5555543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.40  E-value=0.00016  Score=67.94  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      ......|.+++++|+...++.| .||+|.+||...+-...          ....-.++.++|+|+| .++++|+..|.+.
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ  324 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHPDG-AIFVVGSEQGELQ  324 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence            4667889999999999999999 99999999998442211          1223446889999999 9999999999999


Q ss_pred             EEEccCCc
Q 011368          280 LVDMRQSA  287 (487)
Q Consensus       280 iwd~~~~~  287 (487)
                      +||+.-..
T Consensus       325 ~FD~ALsp  332 (545)
T PF11768_consen  325 CFDMALSP  332 (545)
T ss_pred             EEEeecCc
Confidence            99998754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.37  E-value=0.00052  Score=65.32  Aligned_cols=151  Identities=13%  Similarity=0.013  Sum_probs=78.5

Q ss_pred             CEEEEe-cCCeEEEEEccCCCceeEEeecCC-CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce
Q 011368          217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  294 (487)
Q Consensus       217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  294 (487)
                      ..++.+ .++.+.-+|.++++...+.-...+ ....+...+    ... +  ..++.++.+|.+..+|..+++..    -
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v~-~--~~v~~~~~~g~v~a~d~~~G~~~----W  229 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----ATA-F--GGAIVGGDNGRVSAVLMEQGQLI----W  229 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EEE-C--CEEEEEcCCCEEEEEEccCChhh----h
Confidence            345555 888999999986665554310000 000011111    111 2  35677788899999999988743    1


Q ss_pred             eecccccccCccccccccccceeEEEEcC---CCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcc
Q 011368          295 ILRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  371 (487)
Q Consensus       295 ~~~~h~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (487)
                      ....  ..+.....+    .....+..+|   ++..++++.++.+..+|..+ ++.+........               
T Consensus       230 ~~~~--~~~~~~~~~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~---------------  287 (394)
T PRK11138        230 QQRI--SQPTGATEI----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV---------------  287 (394)
T ss_pred             eecc--ccCCCccch----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc---------------
Confidence            1111  000000000    0011111122   34344444569999999987 665544332110               


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          372 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       372 ~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                        ..+..  ++..|+.++.+|.+..+|..+++.
T Consensus       288 --~~~~~--~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        288 --NDFAV--DGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             --cCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence              12222  456777888899999999998854

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.34  E-value=0.00031  Score=67.22  Aligned_cols=123  Identities=14%  Similarity=0.181  Sum_probs=85.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |...|.--+++..+++++.|+..|.+.+|+-.+++..                          .....+-.         
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~~---------   76 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGAT---------   76 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCcc---------
Confidence            4556666677788999999999999999998777542                          11111111         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         +.+..+..  +++..++|.|+..|.|.++-+..+........                                   
T Consensus        77 ---~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~-----------------------------------  116 (726)
T KOG3621|consen   77 ---GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDYV-----------------------------------  116 (726)
T ss_pred             ---ceEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCcceee-----------------------------------
Confidence               33444444  56777888889999999998876432211000                                   


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  234 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~  234 (487)
                            ...-..|...|++++|++|+..+++| ..|.|..-.++.
T Consensus       117 ------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 ------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                  00013578999999999999999999 999998887774

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.33  E-value=6.9e-05  Score=71.49  Aligned_cols=120  Identities=12%  Similarity=0.043  Sum_probs=88.5

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .|.--++  +..+++++.|+.-|.+.+|+-.++++....                                         
T Consensus        35 ~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-----------------------------------------   71 (726)
T KOG3621|consen   35 RVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLK-----------------------------------------   71 (726)
T ss_pred             eEEEEEe--ecCCceEEEecccceEEEEecCchhhhccc-----------------------------------------
Confidence            3443444  457889999999999999999888765442                                         


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                           ..+..+.+..+..+++..++|.| ..|.|.++.++.....-..+ .. .--..|...|++++|++++ ..+++|.
T Consensus        72 -----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~-~t-~~d~~~~~rVTal~Ws~~~-~k~ysGD  143 (726)
T KOG3621|consen   72 -----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY-VT-PCDKSHKCRVTALEWSKNG-MKLYSGD  143 (726)
T ss_pred             -----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee-ec-cccccCCceEEEEEecccc-cEEeecC
Confidence                 12344556677788888888888 99999999888533322221 11 1112378899999999999 9999999


Q ss_pred             CCCeEEEEEccC
Q 011368          274 SRGFVRLVDMRQ  285 (487)
Q Consensus       274 ~dg~i~iwd~~~  285 (487)
                      ..|.|.+-.+..
T Consensus       144 ~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  144 SQGKVVLTELDS  155 (726)
T ss_pred             CCceEEEEEech
Confidence            999999888776

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9e-05  Score=65.87  Aligned_cols=249  Identities=9%  Similarity=0.019  Sum_probs=133.5

Q ss_pred             ccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..|...|..++|||..+ ++..++.+..|+|.|+++...                           +.++..|       
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~---------------------------vssy~a~-------  235 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV---------------------------VSSYIAY-------  235 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEeccccee---------------------------eeheecc-------
Confidence            34677899999999887 788899999999999987654                           3455555       


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccccee-Ee-eecCCCCceeeeeccccccccccccCCCCccee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                            ..+++++|.- .+..++..|-..|.|.+||++..+-. .. .......++..+++.+++ ..+.+++--.....
T Consensus       236 ------~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n-~~f~~gglLv~~lt  307 (463)
T KOG1645|consen  236 ------NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN-KIFTSGGLLVFALT  307 (463)
T ss_pred             ------CCceeeeecc-CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcc-ccccccceEEeeeh
Confidence                  5689999973 44667778889999999999753321 11 111223345555555555 22222221111122


Q ss_pred             eeeeeeccce----eeeecccCCCceeEEEeCCCCCEEEEe--cCC------eEEEE-EccCCCceeEEeecCCCCC-CC
Q 011368          186 YHLEWTENMA----TKVYPHAHDFNINSISNNSDCETFVSA--DDL------RINLW-NLEISDQCFNIVDMKPSNM-DD  251 (487)
Q Consensus       186 ~~~~~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~------~i~iw-d~~~~~~~~~~~~~~~~~~-~~  251 (487)
                      ....|+....    ..+.-.+..+.+.+++..+-.+.++..  .+.      .|-.+ |-. .+..+-.  .+ ... ..
T Consensus       308 ~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~-dG~pVc~--~r-~~~~Gs  383 (463)
T KOG1645|consen  308 VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFR-DGFPVCG--KR-RTYFGS  383 (463)
T ss_pred             hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccc-cCceeee--ec-ccccCC
Confidence            2222332111    111112335566667776644554443  321      11110 001 0111100  00 000 00


Q ss_pred             CCCcE--EEEEE-ecCCCCEEE-EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC--CC
Q 011368          252 LTEVI--TSAEF-HPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DG  325 (487)
Q Consensus       252 ~~~~v--~~v~~-~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~--~~  325 (487)
                      ..-.+  +...+ .++. ++++ ++.+.+.+.+||..+.+..    +.+..              ..+|.+++...  .+
T Consensus       384 ~~~kl~t~~ai~~~~~n-n~iv~~gd~tn~lil~D~~s~evv----Q~l~~--------------~epv~Dicp~~~n~~  444 (463)
T KOG1645|consen  384 KQTKLSTTQAIRAVEDN-NYIVVVGDSTNELILQDPHSFEVV----QTLAL--------------SEPVLDICPNDTNGS  444 (463)
T ss_pred             cccccccccceeccccc-cEEEEecCCcceeEEeccchhhee----eeccc--------------CcceeecceeecCCc
Confidence            00000  01112 2344 4444 4455689999999998765    55554              35677776542  34


Q ss_pred             CEEEEEeCCeEEEEeCC
Q 011368          326 QHLLSRDYMNLKLWDIR  342 (487)
Q Consensus       326 ~~l~s~~d~~i~iwd~~  342 (487)
                      .||++-.|..++||..+
T Consensus       445 syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  445 SYLALLTDDRVHIYKNE  461 (463)
T ss_pred             chhhheecceEEEEecC
Confidence            57877778888888764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.20  E-value=4.2e-05  Score=74.93  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=107.3

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .|.-++.    +++++.+|...|+|.+-|..+.+.+..                                          
T Consensus       179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht------------------------------------------  212 (1118)
T KOG1275|consen  179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT------------------------------------------  212 (1118)
T ss_pred             ceEEEEe----cCcEEEeecccceEEeecCCcCceeee------------------------------------------
Confidence            4666664    578899999999999999988776554                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEe-c---------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                           +..|.+.|.++...  |+.|++| .         |..|++||++.......        +.-+.+ ..-+.|+|.
T Consensus       213 -----~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~~~~~-P~flrf~Ps  276 (1118)
T KOG1275|consen  213 -----FDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQFPYG-PQFLRFHPS  276 (1118)
T ss_pred             -----eeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCC--------cccccC-chhhhhccc
Confidence                 37899999887765  7888885 3         55689999995443221        122222 255778898


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~  341 (487)
                      -+..+++++..|...+-|..+-.....  ..+..|+           ....+..+.+|++|+.|+.|+ +|.|.+|.-
T Consensus       277 l~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p-----------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  277 LTTRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNP-----------NGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccceEEEEecccceeeccccccCCCcc--ceeEEcc-----------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            778999999999999998433211100  1111110           134599999999999999996 499999984

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.00089  Score=58.07  Aligned_cols=219  Identities=14%  Similarity=0.221  Sum_probs=108.0

Q ss_pred             CcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      +.++.|+|+|+.+ ++++....+.|...+.+ ++.+                         -...+.+.           
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-------------------------r~i~l~g~-----------   64 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-------------------------RRIPLDGF-----------   64 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-------------------------EEEE-SS------------
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-------------------------EEEeCCCC-----------
Confidence            3599999999865 55556677777666643 3221                         01123332           


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                        +....|++.  .++.++++.-.++.+.++++.... .......                                   
T Consensus        65 --~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~-----------------------------------  105 (248)
T PF06977_consen   65 --GDYEGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRADV-----------------------------------  105 (248)
T ss_dssp             --SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEE-----------------------------------
T ss_pred             --CCceeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchhhc-----------------------------------
Confidence              446788883  556666665578999999884422 1111000                                   


Q ss_pred             eccceeee-ecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC--CCceeEEeecCC-CCCCCCCCcEEEEEEecCC
Q 011368          191 TENMATKV-YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       191 ~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~  265 (487)
                         +.... +...+...+-.++|+|.++.|+.+ ...-..+|.+..  ............ .........+.+++++|..
T Consensus       106 ---~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t  182 (248)
T PF06977_consen  106 ---QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT  182 (248)
T ss_dssp             ---EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred             ---eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence               00000 012456678999999988888887 766677777663  122222211100 0011223457889999987


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  339 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw  339 (487)
                      ..+++.+..+..|..+| .+|+..    ..+.......    -+...-.+...|+|.++|++.+++.-+..++|
T Consensus       183 ~~lliLS~es~~l~~~d-~~G~~~----~~~~L~~g~~----gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  183 GHLLILSDESRLLLELD-RQGRVV----SSLSLDRGFH----GLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             TEEEEEETTTTEEEEE--TT--EE----EEEE-STTGG----G-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEC-CCCCEE----EEEEeCCccc----CcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            56777777788999999 445432    2222100000    00001235788999999988777764655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.00052  Score=67.20  Aligned_cols=211  Identities=14%  Similarity=0.145  Sum_probs=122.2

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      ++++..++.|+.+|.|.+.+-.-.....                                                +..+
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s~~~~~~------------------------------------------------fqa~   63 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSSFQLIRG------------------------------------------------FQAY   63 (933)
T ss_pred             cCCCceEEEeeccccEEEecccceeeeh------------------------------------------------heec
Confidence            4678899999999998887643221111                                                2344


Q ss_pred             CCc-eeEEEeCCCCCEEEE-e-cCC----eEEEEEccCC-----CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          204 DFN-INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       204 ~~~-v~~i~~s~~~~~l~s-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                      ... |..+-...+..+|++ | +++    .+++|+++..     .+++....+-+...+....++.+++.+.+- +.+|+
T Consensus        64 ~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~  142 (933)
T KOG2114|consen   64 EQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVC  142 (933)
T ss_pred             chhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEE
Confidence            444 333333333356666 4 444    6899998743     223311122222223345678899999987 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEeCCeEEEEeCCCCCcee-e
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTPV-A  349 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~d~~i~iwd~~~~~~~~-~  349 (487)
                      |-.+|.|..+.-.--+  .+..+.--.|           .-..+|+.+++..+++. ++++.-..|.+|.+.. ..+. .
T Consensus       143 Gf~nG~V~~~~GDi~R--Drgsr~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~  208 (933)
T KOG2114|consen  143 GFTNGLVICYKGDILR--DRGSRQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLK  208 (933)
T ss_pred             EecCcEEEEEcCcchh--ccccceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCccee
Confidence            9999999888422111  1111211111           01578999999988886 4455557899999974 3333 3


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe-ccCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKN  414 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~  414 (487)
                      .+..+....               .+..+++....+++++. ..+.+|+....+ ....+. +|+.
T Consensus       209 ~ld~~G~~l---------------nCss~~~~t~qfIca~~-e~l~fY~sd~~~-~cfaf~~g~kk  257 (933)
T KOG2114|consen  209 VLDNNGISL---------------NCSSFSDGTYQFICAGS-EFLYFYDSDGRG-PCFAFEVGEKK  257 (933)
T ss_pred             eeccCCccc---------------eeeecCCCCccEEEecC-ceEEEEcCCCcc-eeeeecCCCeE
Confidence            344443321               46677765443555544 369999987543 344444 5543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00055  Score=64.72  Aligned_cols=183  Identities=15%  Similarity=0.135  Sum_probs=105.8

Q ss_pred             cceeEEEEEecCCCcEEEEEe---CC-CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILST---ND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      ..+..-+|  ++++..++...   .. ..+.++++.+++...+.                                    
T Consensus       193 ~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------------------------------------  234 (425)
T COG0823         193 SLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------------------------------------  234 (425)
T ss_pred             cceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceee------------------------------------
Confidence            44666677  46666655542   22 46888899887655441                                    


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe--EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  ...+.-..-+|+|||+.|+.+  .|+.  |++.|+.. +...+        +....+.-..-.|+|+|
T Consensus       235 ------------~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~-~~~~~--------Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         235 ------------NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG-KNLPR--------LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ------------ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC-Cccee--------cccCCccccCccCCCCC
Confidence                        123333456799999998886  6665  55556663 22222        22222222366799999


Q ss_pred             CCEEEEEeC-CCe--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCe--EEE
Q 011368          266 CNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMN--LKL  338 (487)
Q Consensus       266 ~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~--i~i  338 (487)
                       +.|+..+. .|.  |.++|++.+...   ..++..               ..-..-.|+|||++|+..+  .|.  |.+
T Consensus       294 -~~ivf~Sdr~G~p~I~~~~~~g~~~~---riT~~~---------------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~  354 (425)
T COG0823         294 -SKIVFTSDRGGRPQIYLYDLEGSQVT---RLTFSG---------------GGNSNPVWSPDGDKIVFESSSGGQWDIDK  354 (425)
T ss_pred             -CEEEEEeCCCCCcceEEECCCCCcee---EeeccC---------------CCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence             66666654 554  555565554421   122222               1222678999999999754  355  667


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      .|+..... .+.+......                ....|.++|+.++..+.-
T Consensus       355 ~~~~~~~~-~~~lt~~~~~----------------e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         355 NDLASGGK-IRILTSTYLN----------------ESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eccCCCCc-EEEccccccC----------------CCCCcCCCCceEEEeccC
Confidence            77765332 4444433322                256788888887755443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.15  E-value=5e-05  Score=71.25  Aligned_cols=77  Identities=17%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             ccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          313 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       313 ~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      ...+.+++++|+.+.++.| .||+|.+||... +  +..+.... .++              +.++|+|+|..+++|+..
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence            5789999999999988876 689999999865 2  22222111 111              589999999999999999


Q ss_pred             CcEEEEEeCCCCceeE
Q 011368          392 NLLRIFSHGVGSAGGI  407 (487)
Q Consensus       392 g~i~iwd~~~~~~~~~  407 (487)
                      |.+.+||+.-.....+
T Consensus       321 GelQ~FD~ALspi~~q  336 (545)
T PF11768_consen  321 GELQCFDMALSPIKMQ  336 (545)
T ss_pred             ceEEEEEeecCcccee
Confidence            9999999986643333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.13  E-value=0.00051  Score=59.54  Aligned_cols=222  Identities=9%  Similarity=0.053  Sum_probs=107.7

Q ss_pred             cccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          200 PHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       200 ~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      +.+-...+..++|+|+.+.|++ . ..+.|..++.+  ++.++.+     .+.+. +-.-.|++.-++ .++++.-.++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i-----~l~g~-~D~EgI~y~g~~-~~vl~~Er~~~   87 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRI-----PLDGF-GDYEGITYLGNG-RYVLSEERDQR   87 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE-----E-SS--SSEEEEEE-STT-EEEEEETTTTE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEE-----eCCCC-CCceeEEEECCC-EEEEEEcCCCc
Confidence            3566677999999998665555 5 77788777764  4555554     23343 345788888776 66666556899


Q ss_pred             EEEEEccCCccc--cccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC--CCceeeee-
Q 011368          278 VRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM--DSTPVATF-  351 (487)
Q Consensus       278 i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~-  351 (487)
                      +.++++......  ....+.+..        .....+...+..++|+|.++.|+.+ ...-..+|.+..  ....+... 
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            999988543211  000111111        0011235678999999987766655 444445555442  11111111 


Q ss_pred             -ecccccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368          352 -KIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  429 (487)
Q Consensus       352 -~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  429 (487)
                       ......         ...+.+..+++++|. +.+++.......|.++|. +|+. +..+.-..             +. 
T Consensus       160 ~~~~~~~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~-~~~~~L~~-------------g~-  214 (248)
T PF06977_consen  160 DQDLDDD---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRV-VSSLSLDR-------------GF-  214 (248)
T ss_dssp             -HHHH-H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--E-EEEEE-ST-------------TG-
T ss_pred             ccccccc---------cceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCE-EEEEEeCC-------------cc-
Confidence             111100         012223458999995 556666777788888884 4422 11111000             00 


Q ss_pred             ccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          430 SSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       430 ~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                                 .            .+...-..-..|+|.++|++.+++=-|-+|+|.
T Consensus       215 -----------~------------gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f~  248 (248)
T PF06977_consen  215 -----------H------------GLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRFE  248 (248)
T ss_dssp             -----------G------------G-SS---SEEEEEE-TT--EEEEETTTEEEEEE
T ss_pred             -----------c------------CcccccCCccEEEECCCCCEEEEcCCceEEEeC
Confidence                       0            000001133589999999888888777788774

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.00038  Score=62.04  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=57.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|..++|+|. +..++..++.+..|+|.|+++......                                         
T Consensus       194 ~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vss-----------------------------------------  231 (463)
T KOG1645|consen  194 SFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSS-----------------------------------------  231 (463)
T ss_pred             hhhhhhccCcc-ccceeeeeccCceEEEEecccceeeeh-----------------------------------------
Confidence            78999999753 333788899999999999998764433                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCc
Q 011368          194 MATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQ  237 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~  237 (487)
                           + ..+ ..+++++|.-| .++|++| .+|.|.+||++.+..
T Consensus       232 -----y-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  232 -----Y-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             -----e-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence                 1 334 77999999775 4566777 999999999986543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.12  E-value=0.0016  Score=62.08  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~  345 (487)
                      ..++.++.+|.+..+|..+++.      .++..             ......+..  ++..++.+ .++.+..+|..+ +
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~------~W~~~-------------~~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G  314 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQI------VWKRE-------------YGSVNDFAV--DGGRIYLVDQNDRVYALDTRG-G  314 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCE------EEeec-------------CCCccCcEE--ECCEEEEEcCCCeEEEEECCC-C
Confidence            4677777899999999999863      33320             011112222  23444444 569999999986 6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      +.+..........           .   .+...  .+.+|+.++.||.+++.|..+|+.
T Consensus       315 ~~~W~~~~~~~~~-----------~---~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        315 VELWSQSDLLHRL-----------L---TAPVL--YNGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             cEEEcccccCCCc-----------c---cCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            5544332111100           0   12222  245778899999999999999854

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.10  E-value=9e-05  Score=72.71  Aligned_cols=150  Identities=13%  Similarity=0.135  Sum_probs=97.6

Q ss_pred             eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---------CC
Q 011368          207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RG  276 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg  276 (487)
                      |.-|+.  +++.+.+| ..|+|.+-|.++... .       +++.+|.+.|..+.  -.| +.|++++.         |.
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~-i-------ht~~aHs~siSDfD--v~G-NlLitCG~S~R~~~l~~D~  246 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFET-I-------HTFDAHSGSISDFD--VQG-NLLITCGYSMRRYNLAMDP  246 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCce-e-------eeeeccccceeeee--ccC-CeEEEeecccccccccccc
Confidence            544444  58899999 999999999985433 3       35688999887655  457 78888875         45


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEeCCeEEEEeCCCCCce-eeeeec
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTP-VATFKI  353 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~d~~i~iwd~~~~~~~-~~~~~~  353 (487)
                      -|++||+|.-+.+    .-+..+              ..-.-+.|.|.  .+..++...|...+-|..+...+ ...+..
T Consensus       247 FvkVYDLRmmral----~PI~~~--------------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v  308 (1118)
T KOG1275|consen  247 FVKVYDLRMMRAL----SPIQFP--------------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV  308 (1118)
T ss_pred             hhhhhhhhhhhcc----CCcccc--------------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE
Confidence            6899999986533    111110              11234556664  23333344599999884432333 233222


Q ss_pred             ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +...           +  .+..+++|++|+.|+.|..+|.|.+|.-.
T Consensus       309 ~p~~-----------s--~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  309 NPNG-----------S--GISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccCC-----------C--cceeEEecCCCceEEEecccCcEeeecCC
Confidence            2211           1  11589999999999999999999999843

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.08  E-value=0.00034  Score=70.05  Aligned_cols=190  Identities=13%  Similarity=0.095  Sum_probs=109.6

Q ss_pred             CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368          217 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  295 (487)
Q Consensus       217 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  295 (487)
                      ...+.| .+..+..||.+..+..+.  ... ..-........|++-+.+|  +||+|+.+|.||+||- .+...      
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v--~~~-~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A------  610 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLV--DSQ-SKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA------  610 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCcee--ecc-ccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh------
Confidence            455667 999999999986543221  111 1111233456888888887  8999999999999983 32211      


Q ss_pred             ecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC-C----ce--eeeeecccccccccccc----
Q 011368          296 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD-S----TP--VATFKIHEHLRPKLCDL----  364 (487)
Q Consensus       296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~-~----~~--~~~~~~~~~~~~~~~~~----  364 (487)
                                ++.+++...+|..|..+.||++|++..+..|.+++.... +    +.  ...+.....+.+....+    
T Consensus       611 ----------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~  680 (794)
T PF08553_consen  611 ----------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEH  680 (794)
T ss_pred             ----------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHH
Confidence                      112333457999999999999999888788888886321 1    11  11222111111111110    


Q ss_pred             ---c--CCCCcceeeEEEEcC----CCCEEEEEcCCCcEEEEEeCC---CCceeEEEeccCCccccceEeeCCcccc
Q 011368          365 ---Y--NNDSIFDKFECSVSG----DGLHFATGSYSNLLRIFSHGV---GSAGGITVEAGKNENRKPILQAAPRARR  429 (487)
Q Consensus       365 ---~--~~~~~~~~~~~~~s~----d~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~  429 (487)
                         .  ....-...+...|+-    ..+.|+ .+....+.+|+++.   +......++.-...|.+-.|....+..+
T Consensus       681 ~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Iv-tstG~f~v~Wnf~kV~~g~~~~Y~ikry~~~V~~dnF~fg~d~~v  756 (794)
T PF08553_consen  681 VAYMQHETGKPISFTPAKFNTGIGKQETSIV-TSTGPFVVTWNFKKVKRGKKDPYQIKRYDENVVADNFKFGSDKNV  756 (794)
T ss_pred             HHHHHhccCCCceeeceEEecCCCCccceEE-EeccCEEEEEEHHHHhCCCCCceEEEEcCCceEEccceeCCCCcE
Confidence               0  011111224566652    234454 45556899999974   3344556665566666666665544443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.08  E-value=0.011  Score=56.16  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             cceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecc
Q 011368          314 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~  354 (487)
                      +++..|++||+|+++|.-.+ |.+.+.+... .+.+..+...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~  257 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD  257 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence            57999999999999998654 9999988765 5556665544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.06  E-value=0.00044  Score=65.38  Aligned_cols=185  Identities=15%  Similarity=0.221  Sum_probs=107.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEe---cC-CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD---RG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...+..-+|+|+++.++...   .. ..+.++++++++..                         .+..+.++.      
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------------------------~i~~~~g~~------  240 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------------------------VILNFNGNN------  240 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------------------------eeeccCCcc------
Confidence            44567778999997766553   22 35888888877542                         344455555      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEE-eCCCcEEEE--EccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               ..-+|  +|||++|+.+ ..|+...||  |+.++....+                                
T Consensus       241 ---------~~P~f--spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L--------------------------------  277 (425)
T COG0823         241 ---------GAPAF--SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL--------------------------------  277 (425)
T ss_pred             ---------CCccC--CCCCCEEEEEECCCCCccEEEEcCCCCcceec--------------------------------
Confidence                     55677  5788877765 466665554  6666553321                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                      ....+.-..-.|+|||+.|+..  ..|.-.||-....+.....+     +......  ..-.|+
T Consensus       278 ----------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-----T~~~~~~--~~p~~S  334 (425)
T COG0823         278 ----------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-----TFSGGGN--SNPVWS  334 (425)
T ss_pred             ----------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-----eccCCCC--cCccCC
Confidence                            1222222356799999999886  55554444433223322222     1222222  267899


Q ss_pred             cCCCCEEEEEeCC-Ce--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          263 PIYCNLLAYSSSR-GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       263 p~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      |+| ++|+..+.. |.  |.+.|+.++...    +.+..              ......-.|.++|..+...+
T Consensus       335 pdG-~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~--------------~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         335 PDG-DKIVFESSSGGQWDIDKNDLASGGKI----RILTS--------------TYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCC-CEEEEEeccCCceeeEEeccCCCCcE----EEccc--------------cccCCCCCcCCCCceEEEec
Confidence            999 888777743 44  566666555421    44443              23345567888888877543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.06  E-value=4.5e-06  Score=78.31  Aligned_cols=211  Identities=15%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             ccCcEEEEEEcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        31 h~~~V~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ....+.|+++.-+.  .+++.|..+|.|.+-.+....-                         .......+|.       
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------Ss~E~tp~~a-------  102 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------SSAEVTPGYA-------  102 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------ccceeccccc-------
Confidence            35678899887644  5788999999999887653321                         1122233444       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEe----CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                           ...++++|.+ -|...||+|-    .|..+.|||+.++-........                            
T Consensus       103 -----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~----------------------------  148 (783)
T KOG1008|consen  103 -----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL----------------------------  148 (783)
T ss_pred             -----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccccc----------------------------
Confidence                 6789999974 4566677663    5678999999877321111000                            


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                    +..+......+++|-.+.+++.+| ....+.++|++..-....         .-.+..+..+..+|
T Consensus       149 --------------fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  149 --------------FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNTKYVQGITVDP  205 (783)
T ss_pred             --------------cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhhhhcccceecC
Confidence                          011233445588898899999999 888999999982211110         11223466778888


Q ss_pred             CCCCEEEEEeCCCeEEEEE-ccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE-eC-CeEEEE
Q 011368          264 IYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-DY-MNLKLW  339 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~d-~~i~iw  339 (487)
                      -.+.++++-. ||.|.+|| .++-+..   ...... ...+        ....+..++|+|-.. .+++. .| ++|+++
T Consensus       206 ~~~nY~cs~~-dg~iAiwD~~rnienp---l~~i~~-~~N~--------~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  206 FSPNYFCSNS-DGDIAIWDTYRNIENP---LQIILR-NENK--------KPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             CCCCceeccc-cCceeeccchhhhccH---HHHHhh-CCCC--------cccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            4436776655 99999999 4432211   121111 0000        013589999998654 33443 34 999999


Q ss_pred             eCCC
Q 011368          340 DIRM  343 (487)
Q Consensus       340 d~~~  343 (487)
                      |+..
T Consensus       273 di~~  276 (783)
T KOG1008|consen  273 DICV  276 (783)
T ss_pred             cccc
Confidence            9864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.98  E-value=0.0059  Score=57.27  Aligned_cols=252  Identities=13%  Similarity=0.067  Sum_probs=116.9

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeE--eeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      .|+.+.|+  ++...|+.+...|.|.||.....+...  ......+...+-+......+.+.-........      ...
T Consensus         3 ~v~~vs~a--~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~------~~~   74 (395)
T PF08596_consen    3 SVTHVSFA--PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPS------LKE   74 (395)
T ss_dssp             -EEEEEEE--TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-------SE
T ss_pred             eEEEEEec--CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcc------ccc
Confidence            48899995  566789999999999999987654332  00000000000011111111111110000000      000


Q ss_pred             c-ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC-CCCCCcEEEEEEec-----C
Q 011368          193 N-MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHP-----I  264 (487)
Q Consensus       193 ~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p-----~  264 (487)
                      + .+. .++....++|++++.| |=-+++.| .+|.+.+.|++.+.-... -.+..... ......++++.|..     +
T Consensus        75 gf~P~-~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D  151 (395)
T PF08596_consen   75 GFLPL-TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGD  151 (395)
T ss_dssp             EEEEE-EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred             ccCch-hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCC
Confidence            0 111 1235568999999998 55599999 999999999984433332 22221111 12345688888872     1


Q ss_pred             C--CCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEE-EcCC----------------
Q 011368          265 Y--CNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FAND----------------  324 (487)
Q Consensus       265 ~--~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~-~s~~----------------  324 (487)
                      +  .-.+++|+..|.+.+|.+.- ..-  .....+...         ...+.+.|..+. ++.+                
T Consensus       152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g--~f~v~~~~~---------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~  220 (395)
T PF08596_consen  152 GYSSICLLVGTNSGNVLTFKILPSSNG--RFSVQFAGA---------TTNHDSPILSIIPINADTGESALATISAMQGLS  220 (395)
T ss_dssp             SSEEEEEEEEETTSEEEEEEEEE-GGG---EEEEEEEE---------E--SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred             cccceEEEEEeCCCCEEEEEEecCCCC--ceEEEEeec---------cccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence            1  14788899999999998752 110  000111110         011233444333 2111                


Q ss_pred             -----CCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEE-----cCCCCEEEEEcCCCcE
Q 011368          325 -----GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-----SGDGLHFATGSYSNLL  394 (487)
Q Consensus       325 -----~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~sg~~dg~i  394 (487)
                           ..+++++++..++++...+ .+............               ..+++     ...+..|++-..+|.|
T Consensus       221 ~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~~~~Lv~l~~~G~i  284 (395)
T PF08596_consen  221 KGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNGGYCLVCLFNNGSI  284 (395)
T ss_dssp             GT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred             cCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCCceEEEEEECCCcE
Confidence                 1256667778999999876 43333222111110               13444     2356678888999999


Q ss_pred             EEEEeCCCCc
Q 011368          395 RIFSHGVGSA  404 (487)
Q Consensus       395 ~iwd~~~~~~  404 (487)
                      ++|.+..-++
T Consensus       285 ~i~SLP~Lke  294 (395)
T PF08596_consen  285 RIYSLPSLKE  294 (395)
T ss_dssp             EEEETTT--E
T ss_pred             EEEECCCchH
Confidence            9999987644

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.95  E-value=0.013  Score=54.91  Aligned_cols=77  Identities=16%  Similarity=0.152  Sum_probs=54.4

Q ss_pred             cccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc----CC---
Q 011368          310 TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS----GD---  381 (487)
Q Consensus       310 ~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~d---  381 (487)
                      ......+.+++.+|++++.++.+. |.|.++|+.. +..++.+++-.+.                 .+.|-    +.   
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA-----------------qc~wi~~~~~~~~~  365 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA-----------------QCGWIEVPEEGDRD  365 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc-----------------eEEEEEeecccccc
Confidence            344566889999999988887765 9999999987 7888888776543                 12221    00   


Q ss_pred             -------------CC-EEEEEcCCCcEEEEEeCCCCc
Q 011368          382 -------------GL-HFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       382 -------------~~-~l~sg~~dg~i~iwd~~~~~~  404 (487)
                                   .. +++-+-.-|.|.||.+++|..
T Consensus       366 ~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  366 RSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             cccccccCCCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence                         11 234566789999999999843

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.95  E-value=0.018  Score=54.13  Aligned_cols=279  Identities=13%  Similarity=0.113  Sum_probs=133.6

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCC-----Cccc-chhhhhccccc---------c-ccCCCcceeEeee
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP-----NQHI-SRSELEKQMDF---------T-STSHPEYRYKTEF   97 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-----~~~~-~~~~~~~~~~~---------~-~~~~~~~~~~~~~   97 (487)
                      .|+.+.|+++..-|++|...|.|.||.....+.-+     .... -.+.++.....         . ..-...+.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48999999999999999999999999987654321     0000 00001000000         0 0111234455555


Q ss_pred             cCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc
Q 011368           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (487)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      +...            ++|++++.   .|=.+++.|..+|.+.|.|+++...+.......                    
T Consensus        83 ~~~~------------g~vtal~~---S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--------------------  127 (395)
T PF08596_consen   83 DAKQ------------GPVTALKN---SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------  127 (395)
T ss_dssp             ---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred             eccC------------CcEeEEec---CCCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------
Confidence            5555            89999998   356689999999999999998776554321110                    


Q ss_pred             CCCCcceeeeeeeeccceeeeecccCCCceeEEEeC-----CCC---CEEEEe-cCCeEEEEEccC-CCc--eeEEeecC
Q 011368          178 NPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLEI-SDQ--CFNIVDMK  245 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-----~~~---~~l~s~-~d~~i~iwd~~~-~~~--~~~~~~~~  245 (487)
                                         ...-......++++.|+     .|+   -.+++| ..|.+.+|.+.- ...  .+...+. 
T Consensus       128 -------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-  187 (395)
T PF08596_consen  128 -------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA-  187 (395)
T ss_dssp             ---------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-
T ss_pred             -------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec-
Confidence                               00012334556777774     232   466777 889999998762 211  1222111 


Q ss_pred             CCCCCCCCCcEEEEE-EecCC-------------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCc
Q 011368          246 PSNMDDLTEVITSAE-FHPIY-------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  305 (487)
Q Consensus       246 ~~~~~~~~~~v~~v~-~~p~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  305 (487)
                         ...+.+.|..+. ++.+.                   -.-++....+..+|++...+.+...   +.++.       
T Consensus       188 ---~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~---K~~~~-------  254 (395)
T PF08596_consen  188 ---TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH---KSFDD-------  254 (395)
T ss_dssp             ---E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---EE-SS-------
T ss_pred             ---cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---eeecc-------
Confidence               123445555444 32110                   0124444456679999888765331   23322       


Q ss_pred             cccccccccceeEEEEc-----CCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368          306 KSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  379 (487)
Q Consensus       306 ~~~~~~~~~~v~~v~~s-----~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  379 (487)
                             ......+.+-     ..+..|++- .+|.|++|.+.. -+.+..++........           .....+++
T Consensus       255 -------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~-----------~~~~ssis  315 (395)
T PF08596_consen  255 -------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSR-----------RLSSSSIS  315 (395)
T ss_dssp             --------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH-----------HHTT-EE-
T ss_pred             -------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccc-----------cccccEEC
Confidence                   1223333442     234444443 569999999985 5666666553221000           00256778


Q ss_pred             CCCCEEEEEcCCCcEEEEEeC
Q 011368          380 GDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       380 ~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      ++|..++-.+.. .+.++.+-
T Consensus       316 ~~Gdi~~~~gps-E~~l~sv~  335 (395)
T PF08596_consen  316 RNGDIFYWTGPS-EIQLFSVW  335 (395)
T ss_dssp             TTS-EEEE-SSS-EEEEEEEE
T ss_pred             CCCCEEEEeCcc-cEEEEEEE
Confidence            899877655443 45555544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.94  E-value=0.008  Score=53.85  Aligned_cols=163  Identities=12%  Similarity=0.046  Sum_probs=87.4

Q ss_pred             CCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCc-EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce
Q 011368          216 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  294 (487)
Q Consensus       216 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  294 (487)
                      ..+...|.||++.-..+...++...... +  -+..-..+ ...-++...+ ..++.-+.+|.|+--|+.......  ..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~  221 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GK  221 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EE
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeec-c--ccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cC
Confidence            3344445777777777775555442210 0  11111222 2233455555 567778899999888887764211  11


Q ss_pred             eecccccccCccccccccccceeEEEEcCCCCEEEE----Ee-----C--CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368          295 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       295 ~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s----~~-----d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      .++.- .........  -.+...-+++++....|..    +.     +  ..|.++|+.+ ++.+..+......      
T Consensus       222 ~~~~~-t~~e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~------  291 (342)
T PF06433_consen  222 PWSLL-TDAEKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI------  291 (342)
T ss_dssp             EEESS--HHHHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE------
T ss_pred             ccccc-CccccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc------
Confidence            22110 000000000  0134456788876655543    21     2  3588999987 8888888754332      


Q ss_pred             ccCCCCcceeeEEEEcCCCC-EEEEE-cCCCcEEEEEeCCCCc
Q 011368          364 LYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSHGVGSA  404 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d~~-~l~sg-~~dg~i~iwd~~~~~~  404 (487)
                                .++..+.|.+ +|++. ..++.+.+||..+|+.
T Consensus       292 ----------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  292 ----------DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             ----------SEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             ----------ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence                      3889998765 56544 4678999999999854

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.91  E-value=0.0048  Score=58.68  Aligned_cols=218  Identities=11%  Similarity=0.041  Sum_probs=111.3

Q ss_pred             cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      ........++++|+|++++.+.||.-.|+....... .            ..+.-....|.+.  ..+|+-...+.|.|+
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-k------------~~G~g~~~vw~~~--n~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-K------------AFGSGLSFVWSSR--NRYAVLESSSTIKIY   94 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-E------------EEEE-SEEEE-TS--SEEEEE-TTS-EEEE
T ss_pred             CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-c------------ccCceeEEEEecC--ccEEEEECCCeEEEE
Confidence            344557899999999999999999998988442211 1            1133456789985  468888778899996


Q ss_pred             -EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccc
Q 011368          282 -DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK  360 (487)
Q Consensus       282 -d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  360 (487)
                       ++.... .    +.+..              ...+..+-.   |.+|...+++.|.+||+.+ ++.++.+....  +  
T Consensus        95 kn~~~~~-~----k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v--  147 (443)
T PF04053_consen   95 KNFKNEV-V----KSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V--  147 (443)
T ss_dssp             ETTEE-T-T-----------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-----
T ss_pred             EcCcccc-c----eEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C--
Confidence             332211 1    22332              122444433   8888888778999999997 88888887554  1  


Q ss_pred             cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC---------Cc-eeEEEeccCCccccceEeeCCccccc
Q 011368          361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SA-GGITVEAGKNENRKPILQAAPRARRS  430 (487)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  430 (487)
                                   ..+.|+++|.+++..+.+ .++|++.+..         -+ ....+..-...|.+.+|.-.   .  
T Consensus       148 -------------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~--  208 (443)
T PF04053_consen  148 -------------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---C--  208 (443)
T ss_dssp             -------------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---E--
T ss_pred             -------------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---E--
Confidence                         389999999999988866 7888776532         01 12222222455555555531   1  


Q ss_pred             cccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC-CeEEEE
Q 011368          431 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFH  485 (487)
Q Consensus       431 ~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~  485 (487)
                          ++.......+-+ .++........+.++.=+...|+.+.+..... .+++.|
T Consensus       209 ----fiYtT~~~lkYl-~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  209 ----FIYTTSNHLKYL-VNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY  259 (443)
T ss_dssp             ----EEEE-TTEEEEE-ETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred             ----EEEEcCCeEEEE-EcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence                222222222112 11233333344555555666666666555543 334443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.88  E-value=0.012  Score=57.33  Aligned_cols=72  Identities=13%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             cceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCc-----------eeeeeecccccccccccccCCCCcceeeEEEEcC
Q 011368          314 ASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  380 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  380 (487)
                      .....+.++|||++++++.  ++++.|.|+.+...           .+........+                ...+|.+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg  384 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG  384 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence            4678899999999999864  49999999976221           12222222222                3789999


Q ss_pred             CCCEEEEEcCCCcEEEEEeCC
Q 011368          381 DGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       381 d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +|....+---|..|..|++..
T Consensus       385 ~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCEEEeEeecceeEEEehHH
Confidence            998888888899999999986

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.87  E-value=0.0035  Score=63.09  Aligned_cols=143  Identities=13%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             CEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-------CEEEEE-eCCeEE
Q 011368          267 NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-------QHLLSR-DYMNLK  337 (487)
Q Consensus       267 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-------~~l~s~-~d~~i~  337 (487)
                      ++|+... ....|.-.|++.|+.+    ..|..|.            ..+|..  +.|+.       .-.+.| +++.+.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~------------~~~v~~--~~p~~K~aqlt~e~tflGls~n~lf  555 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHD------------DIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLF  555 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEE----EEeecCC------------CcceeE--ecccccccccCCCceEEEECCCceE
Confidence            4444443 4578999999999877    7777741            112333  33332       223344 569999


Q ss_pred             EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccc
Q 011368          338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  417 (487)
Q Consensus       338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  417 (487)
                      .||.+..+..+..-..+...         ...-  ..+++-+.+| +||+|+.+|.||+||- .+..             
T Consensus       556 riDpR~~~~k~v~~~~k~Y~---------~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~-------------  609 (794)
T PF08553_consen  556 RIDPRLSGNKLVDSQSKQYS---------SKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR-------------  609 (794)
T ss_pred             EeccCCCCCceeeccccccc---------cCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cchh-------------
Confidence            99998744322221222211         1111  2466666666 7899999999999983 2211             


Q ss_pred             cceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          418 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                               .+.                        .+.+...+|.+|..+.||++|+..|...+.|+.
T Consensus       610 ---------AKT------------------------~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  610 ---------AKT------------------------ALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ---------hhh------------------------cCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence                     110                        122445699999999999999999998888764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.86  E-value=0.018  Score=52.69  Aligned_cols=168  Identities=12%  Similarity=0.048  Sum_probs=72.6

Q ss_pred             CCCceeEEEeCCC-CCEEEEe----cCCe-EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe---
Q 011368          203 HDFNINSISNNSD-CETFVSA----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---  273 (487)
Q Consensus       203 ~~~~v~~i~~s~~-~~~l~s~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---  273 (487)
                      ....+..+.|+|. ..+|+.|    .+.. -+||-+++.+.....+.     -......+..=-|.|+|..+...+.   
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-----~~~~~e~~gHEfw~~DG~~i~y~~~~~~  260 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-----RRMEGESVGHEFWVPDGSTIWYDSYTPG  260 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-----cCCCCcccccccccCCCCEEEEEeecCC
Confidence            3455677888884 4555555    3332 36777765554444321     0112334555668999943333332   


Q ss_pred             -CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-EeC--C--------------e
Q 011368          274 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M--------------N  335 (487)
Q Consensus       274 -~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~d--~--------------~  335 (487)
                       .+..|.-+|+.+++..    .....               .+..-...++||++++. |+|  .              -
T Consensus       261 ~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~  321 (386)
T PF14583_consen  261 GQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW  321 (386)
T ss_dssp             T--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred             CCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence             1345666777765421    11111               23344556789988874 333  1              4


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeC
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHG  400 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~  400 (487)
                      |+++++.. +.. ..+..|...-..+.  .+....-  -...|||||++++-. ...|...||=++
T Consensus       322 i~~~~~~~-~~~-~~l~~h~~sw~v~~--~~~q~~h--Php~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  322 IYLFDVEA-GRF-RKLARHDTSWKVLD--GDRQVTH--PHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEEEETTT-TEE-EEEEE-------BT--TBSSTT------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             EEEecccc-Cce-eeeeeccCcceeec--CCCccCC--CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            56677764 332 22322321000000  0000000  268999999987644 456777776554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.84  E-value=0.0052  Score=53.92  Aligned_cols=194  Identities=15%  Similarity=0.113  Sum_probs=105.0

Q ss_pred             CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEE
Q 011368           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (487)
Q Consensus        43 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~  122 (487)
                      ++.++++++.++.|..||..+++..                           -.+...             +.+..... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~---------------------------W~~~~~-------------~~~~~~~~-   73 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVL---------------------------WRFDLP-------------GPISGAPV-   73 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEE---------------------------EEEECS-------------SCGGSGEE-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEeecc-------------ccccceee-
Confidence            5667777788999999999888642                           111211             11111111 


Q ss_pred             ecCCCcEEEEEeCCCcEEEEEccccceeEee-ecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecc
Q 011368          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPH  201 (487)
Q Consensus       123 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (487)
                        ..+..++.++.++.+..+|..+|+..... ....+.                                         .
T Consensus        74 --~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------------------------------------~  110 (238)
T PF13360_consen   74 --VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-----------------------------------------A  110 (238)
T ss_dssp             --EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------------------------------C
T ss_pred             --ecccccccccceeeeEecccCCcceeeeeccccccc-----------------------------------------c
Confidence              23456777778889999999999876541 111000                                         0


Q ss_pred             cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC---CCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      . ........+  ++..++.+ .++.|..+|.+++....+. .........+   ...+..-....++  .++.++.++.
T Consensus       111 ~-~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~  184 (238)
T PF13360_consen  111 G-VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGR  184 (238)
T ss_dssp             S-TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSS
T ss_pred             c-cccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEECC--EEEEEcCCCe
Confidence            0 011111222  26777777 7999999999965544433 1110000000   0111222222233  5666666664


Q ss_pred             -EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          278 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       278 -i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                       +.+ |+.+++.      .++. .            ...+..+ ...++..|+.++ ++.|..||+++ ++.+
T Consensus       185 ~~~~-d~~tg~~------~w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~  235 (238)
T PF13360_consen  185 VVAV-DLATGEK------LWSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVV  235 (238)
T ss_dssp             EEEE-ETTTTEE------EEEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEE
T ss_pred             EEEE-ECCCCCE------EEEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEE
Confidence             555 9999872      2322 0            0122221 345667777765 69999999997 6554

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.83  E-value=0.011  Score=57.63  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=25.5

Q ss_pred             eEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368          374 FECSVSGDGLHFATGS-YSNLLRIFSHGVGS  403 (487)
Q Consensus       374 ~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~  403 (487)
                      ..+.+||||+++++++ .++++.|+|+++.+
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            5899999999987666 47999999998754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.80  E-value=0.0083  Score=56.13  Aligned_cols=234  Identities=14%  Similarity=0.093  Sum_probs=113.0

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEee-cCCCCCCCC---------CCcEEEEEEecCCCCEEEEEe
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPSNMDDL---------TEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~---------~~~v~~v~~~p~~~~~l~~~~  273 (487)
                      ...+....|+|+|+.++...++.|.+++...+ ...++.. .....+.+-         -+.-..+-|+|++ +.||...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEE
Confidence            56788999999999999998899999988744 3332211 100000000         0112457899999 7777665


Q ss_pred             C-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368          274 S-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       274 ~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~  352 (487)
                      . +..++.+.+-.-....   .   .              -..+..+.+-.-|.-..   .-.+.|+|+.+ ++.. .+.
T Consensus       120 ~d~~~v~~~~~~~~~~~~---~---~--------------yp~~~~~~YPk~G~~np---~v~l~v~~~~~-~~~~-~~~  174 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPD---S---Q--------------YPEVESIRYPKAGDPNP---RVSLFVVDLAS-GKTT-ELD  174 (353)
T ss_dssp             EE-TTS-EEEEEEESSST---E---S--------------S-EEEEEE--BTTS------EEEEEEEESSS-TCCC-EE-
T ss_pred             ECCcCCceEEeeccCCcc---c---c--------------CCcccccccCCCCCcCC---ceEEEEEECCC-CcEE-Eee
Confidence            4 3444444332210000   0   0              01244444432232211   13567788875 3332 221


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEE--cCC---CcEEEEEeCCCCceeEEEeccCCccc---cceEeeC
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYS---NLLRIFSHGVGSAGGITVEAGKNENR---KPILQAA  424 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg--~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~  424 (487)
                      ......       ..+.  -+..+.|+++++.|+..  +.+   ..+.+.|..++......-+....++.   ...+...
T Consensus       175 ~~~~~~-------~~~~--yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~  245 (353)
T PF00930_consen  175 PPNSLN-------PQDY--YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP  245 (353)
T ss_dssp             --HHHH-------TSSE--EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred             eccccC-------CCcc--CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence            110000       0011  12589999999844433  333   24778888887665555455555553   2222211


Q ss_pred             Cccccccccceeeecccce-ecC---CCCCccccccccCCCeEE-EEEcCCCCEEE-Eec
Q 011368          425 PRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLH-LAWHPTTNLIA-CAN  478 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~-~~w---~~~~~~~~~~~~~~~v~~-~~~spd~~~la-~~s  478 (487)
                      ....+     +.....+|- +++   ..+.....+....-.|.. +.|.++++.|. +|.
T Consensus       246 ~~~~~-----l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  246 DGNEF-----LWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             TSSEE-----EEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred             CCCEE-----EEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEec
Confidence            22222     444446666 666   222233334444445644 68899987765 444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.72  E-value=0.012  Score=53.73  Aligned_cols=107  Identities=12%  Similarity=0.084  Sum_probs=49.8

Q ss_pred             CCcEEEEEEecCCCCEEEEEeC---CC-eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          253 TEVITSAEFHPIYCNLLAYSSS---RG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                      ...+..+.|+|..+.+|+.|-+   +. .-|||-+++...-.   +.+..|.  +         ...+.-=-|.|||..|
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~--~---------~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRM--E---------GESVGHEFWVPDGSTI  252 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS-----T---------TEEEEEEEE-TTSS-E
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCC--C---------CcccccccccCCCCEE
Confidence            3557789999988677777655   22 13667665432111   1111110  0         1234444688999877


Q ss_pred             EE-E-e----CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          329 LS-R-D----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       329 ~s-~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      .- + .    +..|.-+|+.+ ............                 ..+..++||++++-=+.|
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~~-----------------~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPWC-----------------SHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT---EEEEEEE-SE-----------------EEEEE-TTSSEEEEEE--
T ss_pred             EEEeecCCCCceEEEeeCCCC-CCceEEEeCCce-----------------eeeEEcCCCCEEEecCCC
Confidence            63 1 1    24566777776 332222222111                 256677899987754444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.72  E-value=0.016  Score=55.19  Aligned_cols=229  Identities=11%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      ....+.++|+|++++.+ .||...|+.....+.                             ...               
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-----------------------------k~~---------------   68 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-----------------------------KAF---------------   68 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-----------------------------EEE---------------
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-----------------------------ccc---------------
Confidence            57899999999999885 578888888322211                             111               


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEE-EccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLW-KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      +.-....|.  + ...+|+-...++|.++ ++.......+                                        
T Consensus        69 G~g~~~vw~--~-~n~yAv~~~~~~I~I~kn~~~~~~k~i----------------------------------------  105 (443)
T PF04053_consen   69 GSGLSFVWS--S-RNRYAVLESSSTIKIYKNFKNEVVKSI----------------------------------------  105 (443)
T ss_dssp             EE-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-TT-------------------------------------------
T ss_pred             CceeEEEEe--c-CccEEEEECCCeEEEEEcCccccceEE----------------------------------------
Confidence            334567784  4 4457777778889996 3432221111                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                               .....+..|-.   |.+|....++.|.+||+.+ ++.+..++        . ..|..+.|+++| .+++..
T Consensus       106 ---------~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~--------v-~~vk~V~Ws~~g-~~val~  162 (443)
T PF04053_consen  106 ---------KLPFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRID--------V-SAVKYVIWSDDG-ELVALV  162 (443)
T ss_dssp             -----------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEES--------S--E-EEEEE-TTS-SEEEEE
T ss_pred             ---------cCCcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEe--------c-CCCcEEEEECCC-CEEEEE
Confidence                     00112333322   8888887666999999994 45554431        1 238999999999 888888


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~  352 (487)
                      +.+ .+.|++.......    . ... ..-........+....|.+.+|..+ -++.+.. +.++.+-  . +. ...+.
T Consensus       163 t~~-~i~il~~~~~~~~----~-~~~-~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~~lkYl~--~-Ge-~~~i~  229 (443)
T PF04053_consen  163 TKD-SIYILKYNLEAVA----A-IPE-EGVEDAFELIHEISERIKSGCWVED-CFIYTTS-NHLKYLV--N-GE-TGIIA  229 (443)
T ss_dssp             -S--SEEEEEE-HHHHH----H-BTT-TB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-TEEEEEE--T-TE-EEEEE
T ss_pred             eCC-eEEEEEecchhcc----c-ccc-cCchhceEEEEEecceeEEEEEEcC-EEEEEcC-CeEEEEE--c-CC-cceEE
Confidence            866 4666654432000    0 000 0000000001111357888999866 3444444 3666622  1 21 22222


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      .-..+.               .=+...|..+.+.....|+.+..+.+..
T Consensus       230 ~ld~~~---------------yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  230 HLDKPL---------------YLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             E-SS-----------------EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EcCCce---------------EEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            112211               2466667667788888888888887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.65  E-value=0.042  Score=49.42  Aligned_cols=163  Identities=12%  Similarity=0.052  Sum_probs=91.9

Q ss_pred             EEEeCCCCCEEEE----------e-cCCeEEEEEccCCCceeEEeecCCC-CCCCCCCcEEEEEEecCCCCEEEEEeC--
Q 011368          209 SISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSS--  274 (487)
Q Consensus       209 ~i~~s~~~~~l~s----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~--  274 (487)
                      .+..+|+++.+++          | +.-.|.+||..+-....+ +.+++. ... .......++++.++ +++++...  
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-I~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TP  116 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-IEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTP  116 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-EEETTS-B---BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-EecCCcchhe-ecccccceEEccCC-cEEEEEccCC
Confidence            3567899998876          3 345689999995443333 223321 111 11122345788888 77777643  


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecc
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~  354 (487)
                      .-.|.|.|+..++..    ..+..               ..+..+-=+++..+...|.||.+.-..+...++........
T Consensus       117 a~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~  177 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV  177 (342)
T ss_dssp             SEEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred             CCeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence            457999999987654    33333               12333333344456667888999988888666665222110


Q ss_pred             cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      -        ....+.++  ..-+++..+..++--+.+|.|+--|+....
T Consensus       178 F--------~~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  178 F--------DPDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             S--------STTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred             c--------CCCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCc
Confidence            0        01122232  345566555556668889999998887654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.021  Score=49.19  Aligned_cols=106  Identities=12%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             CCceeEEEeCCCC-CEEEEe-cCC-eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----
Q 011368          204 DFNINSISNNSDC-ETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~-~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----  275 (487)
                      ......|+++|.. .-++.+ .-| ...++|.......+.+...+.+.+.+|.      .|+|+| .+|+..-.|     
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG-~~LYATEndfd~~r  139 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDG-RLLYATENDFDPNR  139 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCC-cEEEeecCCCCCCC
Confidence            4455678888864 445556 544 4678899865555544433334444553      589999 887776543     


Q ss_pred             CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      |.|-|||.+.+-   +.+-.|..|             --.-..+.|.+||+.|+.+.
T Consensus       140 GViGvYd~r~~f---qrvgE~~t~-------------GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         140 GVIGVYDAREGF---QRVGEFSTH-------------GIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ceEEEEeccccc---ceecccccC-------------CcCcceeEEecCCcEEEEeC
Confidence            789999998542   223444443             34567899999999998754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.57  E-value=0.054  Score=48.73  Aligned_cols=231  Identities=13%  Similarity=0.072  Sum_probs=119.5

Q ss_pred             CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc
Q 011368          215 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  293 (487)
Q Consensus       215 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  293 (487)
                      .++.|+.| .+| +++++........++.         +...|..+...|+- +.+++-+ |+.+.++++..-.......
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccc
Confidence            57888888 887 9999994334333332         22339999999986 6665554 4999999998754321100


Q ss_pred             eeecccccccCccccccccccceeEEE---EcCCCCEEEEEeCCeEEEEeCCCC---C-ceeeeeecccccccccccccC
Q 011368          294 RILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLYN  366 (487)
Q Consensus       294 ~~~~~h~~~~~~~~~~~~~~~~v~~v~---~s~~~~~l~s~~d~~i~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~  366 (487)
                       .... .......... .....+...+   -...+..|+++....|.+|.....   . ...+.+.....+         
T Consensus        74 -~~~~-~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~---------  141 (275)
T PF00780_consen   74 -PLAF-PKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP---------  141 (275)
T ss_pred             -cccc-cccccccccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc---------
Confidence             0000 0000000000 0012334333   223345666666679998887642   2 345555555443         


Q ss_pred             CCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC---------ccccceEeeCCccccccccceee
Q 011368          367 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTR  437 (487)
Q Consensus       367 ~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~~  437 (487)
                             ..++|.  ++.|+.|..+ ...+.|+.++.... .+.....         ....+......++.+     |+.
T Consensus       142 -------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----Ll~  205 (275)
T PF00780_consen  142 -------SSIAFL--GNKICVGTSK-GFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF-----LLC  205 (275)
T ss_pred             -------EEEEEe--CCEEEEEeCC-ceEEEecCCCCceE-EeCccCCcchhhhcccCCCceEEEEeCCceE-----EEE
Confidence                   488888  5577777765 47788999764321 1111111         111122222112232     333


Q ss_pred             ecccceecCCCCCccc-cccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368          438 GLYRQAHENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  487 (487)
Q Consensus       438 g~~~~~~~w~~~~~~~-~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~  487 (487)
                      ...-+..+-..++... ..........++++  ..++|+.-..+.+-||++
T Consensus       206 ~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~  254 (275)
T PF00780_consen  206 YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL  254 (275)
T ss_pred             ecceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence            2211113333333222 23334445566666  357888888888888864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.002  Score=59.90  Aligned_cols=140  Identities=11%  Similarity=0.115  Sum_probs=91.7

Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE--------EEEEeCCeEEEE
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--------LLSRDYMNLKLW  339 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~--------l~s~~d~~i~iw  339 (487)
                      ++..+.....++-.|++.|+.+    ..|..|              ..|+-+.+.|+.+.        |+.-+++.|.-|
T Consensus       348 il~~~~~~~~l~klDIE~GKIV----eEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri  409 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIV----EEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI  409 (644)
T ss_pred             EeeCCCCcCcceeeecccceee----eEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence            3444555667888899999876    677763              34777778777542        222356999999


Q ss_pred             eCCCCCc-eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368          340 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       340 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      |.+..+. .+...+.|+....         .-  ..+.+-..+ .+|++||.+|.|++||. .+..             +
T Consensus       410 DpRv~~~~kl~~~q~kqy~~k---------~n--Fsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~-------------A  463 (644)
T KOG2395|consen  410 DPRVQGKNKLAVVQSKQYSTK---------NN--FSCFATTES-GYIVVGSLKGDIRLYDR-IGRR-------------A  463 (644)
T ss_pred             cccccCcceeeeeeccccccc---------cc--cceeeecCC-ceEEEeecCCcEEeehh-hhhh-------------h
Confidence            9986554 3334444443211         11  124444444 48999999999999997 4411             1


Q ss_pred             ceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368          419 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  484 (487)
Q Consensus       419 ~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i  484 (487)
                      -                                 ..+.++..+|.+|..+.||++|+..|...+.+
T Consensus       464 K---------------------------------TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  464 K---------------------------------TALPGLGDAIKHVDVTADGKWILATCKTYLLL  496 (644)
T ss_pred             h---------------------------------hcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence            1                                 12234556899999999999999998887665

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.51  E-value=0.0041  Score=61.15  Aligned_cols=71  Identities=18%  Similarity=0.325  Sum_probs=60.8

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .+++++|+|..-.|+.|-.-|.+.+|...+.+.                           .+....|.            
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---------------------------htv~~th~------------  101 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---------------------------HTVVETHP------------  101 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCcee---------------------------eeeccCCC------------
Confidence            357899999998999999999999999776543                           35556677            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~  145 (487)
                      .+|..+.|  +++|..++++..-|.+.+|...
T Consensus       102 a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  102 APIQGLDW--SHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCceeEEe--cCCCCeEEEcCCCceeEEEEee
Confidence            89999999  6899999999999999999876

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.0053  Score=52.66  Aligned_cols=87  Identities=13%  Similarity=0.086  Sum_probs=51.9

Q ss_pred             cCCCceeEEEeCCCCCEEEEe-cCCeE----EEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CC
Q 011368          202 AHDFNINSISNNSDCETFVSA-DDLRI----NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR  275 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i----~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d  275 (487)
                      -+.-.|+.++..+||+..+.| ..|.-    -+--....+..++.+++++.........|-+++.+... .+++..+ ..
T Consensus       223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~G  301 (366)
T COG3490         223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRG  301 (366)
T ss_pred             hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCC
Confidence            345568888888898888876 43321    11122224445555444433333444567788888655 4444444 55


Q ss_pred             CeEEEEEccCCccc
Q 011368          276 GFVRLVDMRQSALC  289 (487)
Q Consensus       276 g~i~iwd~~~~~~~  289 (487)
                      +...+||..++...
T Consensus       302 N~~vi~da~tG~vv  315 (366)
T COG3490         302 NRAVIWDAATGAVV  315 (366)
T ss_pred             CeEEEEEcCCCcEE
Confidence            67889999999754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.42  E-value=0.014  Score=42.89  Aligned_cols=103  Identities=14%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             eeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          116 INRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       116 I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      |++++++....  ...|++|+.|..||+|+-+.-  ...                                         
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~E-----------------------------------------   38 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAE-----------------------------------------   38 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEE-----------------------------------------
Confidence            67777764222  267999999999999975432  211                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe---cCCCCEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLL  269 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~l  269 (487)
                             ....+.|.+++-... ..++.+ .+|+|-+|+-.  .+.+++        +. ...+.++.+.   -+|...|
T Consensus        39 -------i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi--------KS-K~~~~~~~~~D~~gdG~~eL   99 (111)
T PF14783_consen   39 -------ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI--------KS-KNQVTSMAFYDINGDGVPEL   99 (111)
T ss_pred             -------EecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee--------cc-CCCeEEEEEEcCCCCCceEE
Confidence                   233556777777655 567788 99999999764  333332        11 2225555543   3454578


Q ss_pred             EEEeCCCeEEE
Q 011368          270 AYSSSRGFVRL  280 (487)
Q Consensus       270 ~~~~~dg~i~i  280 (487)
                      ++|-.+|.|-+
T Consensus       100 I~GwsnGkve~  110 (111)
T PF14783_consen  100 IVGWSNGKVEV  110 (111)
T ss_pred             EEEecCCeEEe
Confidence            99988887743

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0011  Score=62.91  Aligned_cols=95  Identities=19%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE-EEEEecCCCCEEEEEeCCCeEEE
Q 011368          203 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRL  280 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~i  280 (487)
                      -...+.-+.|+|.-.+||.+ .+|.|.+..++ -.+.+.        ++-++..++ +++|.|+| +.||+|-.||+|++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L   88 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRL   88 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEE
Confidence            34567889999999999999 99999999888 444432        333555555 99999999 99999999999999


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                      .|..++..+....  +..              ...|.++.|.+
T Consensus        89 ~Dve~~~~l~~~~--~s~--------------e~~is~~~w~~  115 (665)
T KOG4640|consen   89 HDVEKGGRLVSFL--FSV--------------ETDISKGIWDR  115 (665)
T ss_pred             EEccCCCceeccc--ccc--------------ccchheeeccc
Confidence            9999987653221  222              34678888863

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.35  E-value=0.08  Score=48.87  Aligned_cols=115  Identities=15%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      ...++|++++--  +..|+++.++.|.+|++.........-      .......+.++...  + +++++|..-..+.++
T Consensus        86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL  154 (321)
T ss_dssp             EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred             eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence            446778888766  345888877899999999555233221      11122356666655  4 689999888888887


Q ss_pred             EccCCcc-ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCC
Q 011368          282 DMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  342 (487)
Q Consensus       282 d~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~  342 (487)
                      ..+.... +    ..+..           .....+++++.+-++++.+++++. |.+.++...
T Consensus       155 ~~~~~~~~l----~~va~-----------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEENNKL----ILVAR-----------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTTE-E----EEEEE-----------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccCCEE----EEEEe-----------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            5554211 1    11111           001346888888867677777765 999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.29  E-value=0.17  Score=48.16  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=25.8

Q ss_pred             CceeEEEeCCCCCEEEEecCCeEEEEEcc
Q 011368          205 FNINSISNNSDCETFVSADDLRINLWNLE  233 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~  233 (487)
                      +.|.++.|+.+.++++...||.+++||+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            78999999988777777799999999997

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.28  E-value=0.00045  Score=40.10  Aligned_cols=31  Identities=26%  Similarity=0.557  Sum_probs=28.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~   60 (487)
                      .|...|++++|++++.++++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3677899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.25  E-value=0.14  Score=47.65  Aligned_cols=118  Identities=11%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEeCCCeEEEEEc-cCCccccccceeecccc
Q 011368          224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAA  300 (487)
Q Consensus       224 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~h~  300 (487)
                      ..++.+||+. ..+..+.+++.     .....+..|.|.  |+...-++.+--..+|..|-- +.++-..+  ++.+. .
T Consensus       221 G~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~i-p  291 (461)
T PF05694_consen  221 GHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDI-P  291 (461)
T ss_dssp             --EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE--
T ss_pred             cCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEEC-C
Confidence            4789999999 56677766543     112234455554  444122333333445554433 44432111  11111 0


Q ss_pred             cccCcccc-------ccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeee
Q 011368          301 ESHGSKSF-------FTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       301 ~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~  350 (487)
                      ..+.....       |..-..-|+.|..|.|.++|..+.  .|.|+.||+....++...
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence            00000011       111135689999999999999875  599999999865555443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.23  E-value=0.12  Score=45.02  Aligned_cols=176  Identities=9%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      .+-...+.++.|+|+.+.|++- ....- |-.+.+.+..+..+     .+.+-.+ ...+.+.-.| ++.++--.++.+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~Gdlirti-----PL~g~~D-pE~Ieyig~n-~fvi~dER~~~l~  153 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEGDLIRTI-----PLTGFSD-PETIEYIGGN-QFVIVDERDRALY  153 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCce-EEEEecCCceEEEe-----cccccCC-hhHeEEecCC-EEEEEehhcceEE
Confidence            4556679999999999999887 44443 33455567777765     2333322 3567777777 7777777788998


Q ss_pred             EEEccCCccccccce-eecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCce--eeeeeccc
Q 011368          280 LVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHE  355 (487)
Q Consensus       280 iwd~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~--~~~~~~~~  355 (487)
                      ++.+........... .+..        ....+-+.....++|.|..+.|..+-. +=+.||.+......  +.....+.
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L--------~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPL--------GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             EEEEcCCccEEeccceEEec--------cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence            887776532211101 1111        001111457889999998887777643 55555555421111  11111111


Q ss_pred             ccccccccccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeC
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~  400 (487)
                      ...    ++    .+.++.++.|.+. +..|+-+.+++.+.-.|..
T Consensus       226 ~~~----~~----f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         226 ADR----DL----FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ccc----ce----EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            110    00    1223457888874 5556666666777666665

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.22  E-value=0.026  Score=41.53  Aligned_cols=101  Identities=12%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             EEEEEE---ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          256 ITSAEF---HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       256 v~~v~~---~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      |+++++   .-+|.+.|++|+.|..||+|+-..  .+    ..+..              ...|..++-...+++.++-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~----~Ei~e--------------~~~v~~L~~~~~~~F~Y~l~   61 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IV----AEITE--------------TDKVTSLCSLGGGRFAYALA   61 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EE----EEEec--------------ccceEEEEEcCCCEEEEEec
Confidence            444444   445668999999999999997553  22    34444              46788888887766555546


Q ss_pred             CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC---CC-CEEEEEcCCCcEE
Q 011368          333 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DG-LHFATGSYSNLLR  395 (487)
Q Consensus       333 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~-~~l~sg~~dg~i~  395 (487)
                      +|+|-+|+-   ...+...+.....                +++++..   || ..|++|-.+|.|-
T Consensus        62 NGTVGvY~~---~~RlWRiKSK~~~----------------~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   62 NGTVGVYDR---SQRLWRIKSKNQV----------------TSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCEEEEEeC---cceeeeeccCCCe----------------EEEEEEcCCCCCceEEEEEecCCeEE
Confidence            699988875   2334444433332                2554433   33 3688888888774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.002  Score=61.17  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             cceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          314 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      ..+..+.|+|.-.++|.+. +|.|-++.+.  ...+.++..+...+.              ++++|.|||+.||.|-.||
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG   84 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG   84 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence            4688899999999999885 5989999886  566667765554331              3899999999999999999


Q ss_pred             cEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          393 LLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       393 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      +|++.|+.++......+-.-...+..+.|.
T Consensus        85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eEEEEEccCCCceeccccccccchheeecc
Confidence            999999999866544433444555555554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.05  E-value=0.37  Score=47.37  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          381 DGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       381 d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                      .+..|++++.||.|+.+|.++|+..
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCcee
Confidence            4568888999999999999999553

The alignment model contains an 8-bladed beta-propeller.

>smart00320 WD40 WD40 repeats

Probab=97.04  E-value=0.0021  Score=37.06  Aligned_cols=36  Identities=28%  Similarity=0.634  Sum_probs=29.9

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd  143 (487)
                      ...+..|.            ..|.+++|.  +++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~------------~~i~~~~~~--~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHT------------GPVTSVAFS--PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecC------------CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence            45566777            889999994  5678999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.01  E-value=0.14  Score=47.34  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=81.2

Q ss_pred             CeEEEEEccCC---CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCc-cccccceeecccc
Q 011368          225 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA  300 (487)
Q Consensus       225 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~h~  300 (487)
                      |.|.++++...   ...++.+.     -....++|++++-- .+  .|+++. .+.|.+|++...+ +..  ...+..  
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~-~~--~lv~~~-g~~l~v~~l~~~~~l~~--~~~~~~--  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSF-NG--RLVVAV-GNKLYVYDLDNSKTLLK--KAFYDS--  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEE-TT--EEEEEE-TTEEEEEEEETTSSEEE--EEEE-B--
T ss_pred             cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhh-CC--EEEEee-cCEEEEEEccCcccchh--hheecc--
Confidence            88999999853   12333221     12346778888866 44  444443 4789999999876 221  011111  


Q ss_pred             cccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368          301 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  379 (487)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  379 (487)
                                  ...+.++...  +.+++.|+- ..+.++..+.....+..+.......             +++++.+-
T Consensus       129 ------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l  181 (321)
T PF03178_consen  129 ------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL  181 (321)
T ss_dssp             ------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred             ------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence                        2345555554  558888874 7888776554344344444322222             23578887


Q ss_pred             CCCCEEEEEcCCCcEEEEEeCC
Q 011368          380 GDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       380 ~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +|++.++++..+|.+.++....
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-S
T ss_pred             cCCcEEEEEcCCCeEEEEEECC
Confidence            6667899999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.99  E-value=0.37  Score=46.35  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=75.2

Q ss_pred             eeEEEeCCCCCEEEEe----cC-CeEEEEEccCC---CceeEEeecCCCCCCCCCCcE-EEEEEecCCCCEEEEEeC---
Q 011368          207 INSISNNSDCETFVSA----DD-LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVI-TSAEFHPIYCNLLAYSSS---  274 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~----~d-~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v-~~v~~~p~~~~~l~~~~~---  274 (487)
                      ...+..++|+++|+..    .+ ..+.+.++...   ......+       ......+ ..+... .+ .+++....   
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l-------~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~  299 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL-------SPREDGVEYYVDHH-GD-RLYILTNDDAP  299 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE-------EESSSS-EEEEEEE-TT-EEEEEE-TT-T
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE-------eCCCCceEEEEEcc-CC-EEEEeeCCCCC
Confidence            5678889999998763    23 45778888743   2222222       1222233 333333 33 34444332   


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCcccccccccc--ceeEEEEcCCCCEEEEE--eC--CeEEEEeCCCCCcee
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR--DY--MNLKLWDIRMDSTPV  348 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~s~--~d--~~i~iwd~~~~~~~~  348 (487)
                      .+.|.-.++......... ..+-.             +..  .+..+...  +.+|+..  .+  ..|+++++.. +...
T Consensus       300 ~~~l~~~~l~~~~~~~~~-~~l~~-------------~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~-~~~~  362 (414)
T PF02897_consen  300 NGRLVAVDLADPSPAEWW-TVLIP-------------EDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDD-GKES  362 (414)
T ss_dssp             T-EEEEEETTSTSGGGEE-EEEE---------------SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT--TEEE
T ss_pred             CcEEEEecccccccccce-eEEcC-------------CCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCC-CcEE
Confidence            356666676664421000 11111             223  35555543  4555543  34  6789999872 4444


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEE--EEcC--CCcEEEEEeCCCCce
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA--TGSY--SNLLRIFSHGVGSAG  405 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~--sg~~--dg~i~iwd~~~~~~~  405 (487)
                      ..+......           .   +..+...+++..+.  ..|.  -++++.||+.+++..
T Consensus       363 ~~~~~p~~g-----------~---v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  363 REIPLPEAG-----------S---VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEESSSSS-----------E---EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             eeecCCcce-----------E---EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            444433321           0   12444444444332  2222  367888999888543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.38  Score=45.48  Aligned_cols=156  Identities=11%  Similarity=0.077  Sum_probs=101.3

Q ss_pred             ceeEEEeCCCCCEEEEe-c---CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE-eCCCeEEE
Q 011368          206 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  280 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i  280 (487)
                      ....++++|+++.+..+ .   ++++.+.|..+...... ..      .+- .+ ..++++|+| +.++.. ..++.|.+
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~------vG~-~P-~~~a~~p~g-~~vyv~~~~~~~v~v  186 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP------VGN-TP-TGVAVDPDG-NKVYVTNSDDNTVSV  186 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee------cCC-Cc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence            56789999999888887 4   57888888774443332 21      111 22 789999999 655444 47899999


Q ss_pred             EEccCCcccc-ccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC----CeEEEEeCCCCCceeee-eecc
Q 011368          281 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH  354 (487)
Q Consensus       281 wd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d----~~i~iwd~~~~~~~~~~-~~~~  354 (487)
                      .|........ ........              ...-..+.++|+|.++....+    +.+...|..+ +..... +...
T Consensus       187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~  251 (381)
T COG3391         187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG  251 (381)
T ss_pred             EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence            9977654320 00000111              234577899999997776532    4788888875 433332 2222


Q ss_pred             c-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368          355 E-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  402 (487)
Q Consensus       355 ~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~  402 (487)
                      . .+                ..+..+|+|+++.+... .+.+.+.|..+.
T Consensus       252 ~~~~----------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         252 SGAP----------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             cCCC----------------CceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            2 11                37899999999888744 488999998876

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.85  E-value=0.68  Score=47.29  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=62.1

Q ss_pred             CcceeeEEEEcCC-CCEEEEEcC----------CCcEEEEEeCCCCc-eeEEEeccCCccccceEeeCCcccccccccee
Q 011368          369 SIFDKFECSVSGD-GLHFATGSY----------SNLLRIFSHGVGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNLT  436 (487)
Q Consensus       369 ~~~~~~~~~~s~d-~~~l~sg~~----------dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  436 (487)
                      +...+.++.|..| +.++++|+.          .|.|.|+.+..++. ....-..-++.+.++..-   ++++     +|
T Consensus       773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f---ngkl-----lA  844 (1096)
T KOG1897|consen  773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF---NGKL-----LA  844 (1096)
T ss_pred             eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh---CCeE-----EE
Confidence            4444457778877 777877753          48899999887322 111111112333333222   4554     45


Q ss_pred             eecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEec
Q 011368          437 RGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       437 ~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s  478 (487)
                      +-+..-. .-|.....+.....+..++..+...-.|+.||+|.
T Consensus       845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD  887 (1096)
T KOG1897|consen  845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD  887 (1096)
T ss_pred             ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence            4444444 66766656666667778888888888888888887

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.82  E-value=0.19  Score=50.03  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=45.0

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEE---EEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          204 DFNINSISNNSDCETFVSADDLRINL---WNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~i---wd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      ...|..+.|||||..++.-.++.|++   -... .+. ..+.  .+..+. +....+.++.|.+++ . |+++..++.-.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~-~G~-~~l~--~~~~l~~~l~~~~~~l~W~~~~-~-L~V~~~~~~~~  520 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTE-DGQ-YALT--NPREVGPGLGDTAVSLDWRTGD-S-LVVGRSDPEHP  520 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCC-CCc-eeec--ccEEeecccCCccccceEecCC-E-EEEEecCCCCc
Confidence            45699999999999998875577777   3322 222 2221  111222 233346889999998 5 44655555444


Q ss_pred             EEEcc
Q 011368          280 LVDMR  284 (487)
Q Consensus       280 iwd~~  284 (487)
                      +|.+.
T Consensus       521 v~~v~  525 (591)
T PRK13616        521 VWYVN  525 (591)
T ss_pred             eEEEe
Confidence            55443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.76  E-value=0.0061  Score=37.22  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=28.4

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEee
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV   62 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~   62 (487)
                      ...|.+++|+|...+||.|..+|.|.|+.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999983

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.04  Score=51.69  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             eeEEEeCCCCC-------EEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          207 INSISNNSDCE-------TFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       207 v~~i~~s~~~~-------~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      |+-+.+.|+.+       .-+.| +|..|.-||.+-.+. .+.....+  .+.. ...-.|.+-..+|  +|++||.+|.
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k--qy~~-k~nFsc~aTT~sG--~IvvgS~~Gd  452 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK--QYST-KNNFSCFATTESG--YIVVGSLKGD  452 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc--cccc-ccccceeeecCCc--eEEEeecCCc
Confidence            55555555422       22447 899999999986554 22221111  1111 1234566666665  8999999999


Q ss_pred             EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368          278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  342 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~  342 (487)
                      ||+||- .+....   ..             +++...+|.-|..+.+|++|++..+..+.+-++.
T Consensus       453 IRLYdr-i~~~AK---TA-------------lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  453 IRLYDR-IGRRAK---TA-------------LPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             EEeehh-hhhhhh---hc-------------ccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            999997 332110   12             3334578999999999999998877788887764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.63  E-value=0.48  Score=42.54  Aligned_cols=159  Identities=16%  Similarity=0.166  Sum_probs=81.1

Q ss_pred             CCCEEEEecCCeEEEEEccCCCcee-EEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc
Q 011368          215 DCETFVSADDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  293 (487)
Q Consensus       215 ~~~~l~s~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  293 (487)
                      ....|+++...+|.+|......... ..+    .++ .....+.+++|.+   +.++.|..++ ..+.|+.++...    
T Consensus       104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~----ke~-~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~----  170 (275)
T PF00780_consen  104 GSRRLCVAVKKKILIYEWNDPRNSFSKLL----KEI-SLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPS----  170 (275)
T ss_pred             cceEEEEEECCEEEEEEEECCccccccee----EEE-EcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCce----
Confidence            4455666666699999887532211 110    011 1236788999984   5677777554 788899876532    


Q ss_pred             eeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee--eeecccccccccccccCCCCcc
Q 011368          294 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIF  371 (487)
Q Consensus       294 ~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  371 (487)
                      ..+.. ...............++..+.. +++++|++-+ ..-.+.|..  +.+.+  .+.....+              
T Consensus       171 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~-~~g~fv~~~--G~~~r~~~i~W~~~p--------------  231 (275)
T PF00780_consen  171 ELLDP-SDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD-NIGVFVNKN--GEPSRKSTIQWSSAP--------------  231 (275)
T ss_pred             EEeCc-cCCcchhhhcccCCCceEEEEe-CCceEEEEec-ceEEEEcCC--CCcCcccEEEcCCch--------------
Confidence            22211 0000000000011123333333 3456776544 333344443  33322  33333322              


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          372 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       372 ~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                        .++++.  ..||++.+.+ .|.||++.++ ...+++..
T Consensus       232 --~~~~~~--~pyli~~~~~-~iEV~~~~~~-~lvQ~i~~  265 (275)
T PF00780_consen  232 --QSVAYS--SPYLIAFSSN-SIEVRSLETG-ELVQTIPL  265 (275)
T ss_pred             --hEEEEE--CCEEEEECCC-EEEEEECcCC-cEEEEEEC
Confidence              255653  4588776664 5999999998 44555543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.54  E-value=0.49  Score=41.45  Aligned_cols=184  Identities=11%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.++.|  +|+.+.|++......-.++=-.+|+.+....                                       
T Consensus        86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiP---------------------------------------  124 (316)
T COG3204          86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIP---------------------------------------  124 (316)
T ss_pred             ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEec---------------------------------------
Confidence            56999999  5777788888777777777666676655421                                       


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEee--cCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                            +.+ -.....|.+..++++.++- .++.+.+..+...........  ++.......+.....++|+|.. ..|.
T Consensus       125 ------L~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~  196 (316)
T COG3204         125 ------LTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLF  196 (316)
T ss_pred             ------ccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEE
Confidence                  122 3334567777778888887 999999998885543332211  1112222235677899999998 8888


Q ss_pred             EEeCCCeEEEEEccCCccccccceeeccccc-ccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEEEeCCCCCce
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~iwd~~~~~~~  347 (487)
                      .+-+-.-+.||......      ..+..|.. .+....  .-.-..|.++.|++....|++ +. ++.+.-.|..  +.+
T Consensus       197 ~aKEr~P~~I~~~~~~~------~~l~~~~~~~~~~~~--~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~  266 (316)
T COG3204         197 VAKERNPIGIFEVTQSP------SSLSVHASLDPTADR--DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEV  266 (316)
T ss_pred             EEEccCCcEEEEEecCC------cccccccccCccccc--ceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCe
Confidence            88877777887766443      22222110 000000  001235778888875554444 43 3777777775  555


Q ss_pred             eeeeecccc
Q 011368          348 VATFKIHEH  356 (487)
Q Consensus       348 ~~~~~~~~~  356 (487)
                      +..+..+.+
T Consensus       267 ~~~lsL~~g  275 (316)
T COG3204         267 IELLSLTKG  275 (316)
T ss_pred             eeeEEeccC
Confidence            665554443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.51  E-value=0.65  Score=46.43  Aligned_cols=125  Identities=11%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             eeEEEeCCCCCEEEEe-cC-CeEEEEEccCCCceeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEEEeCCCeEEE---
Q 011368          207 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---  280 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i---  280 (487)
                      ...-.|+|+|+.|++. +. ..+++.+.....+.. .+........ .....|..+.|+|+| ..++... ++.|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~-~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA-RTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEE-EEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence            7788899998888776 32 233444333222221 1111100111 234579999999999 7777765 466666   


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST  346 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~  346 (487)
                      -....+.......+.+.            .+....+..+.|..++.+++...++.-.+|.+.-++.
T Consensus       476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence            33233321100001111            1112346789999999866544444344555544343

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.8  Score=43.34  Aligned_cols=209  Identities=10%  Similarity=0.066  Sum_probs=127.8

Q ss_pred             EEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           35 VSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        35 V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      -..+++++.++.+ ++...++.|.+.|..+.+..                          .....+              
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------------------~~~~vG--------------  115 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------------------GSIPVG--------------  115 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------------------eEeeec--------------
Confidence            3467888888744 44445688999996555431                          111111              


Q ss_pred             cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      .....+++  +++++.+..+..   ++++.+.|-.++......                                     
T Consensus       116 ~~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~-------------------------------------  156 (381)
T COG3391         116 LGPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATI-------------------------------------  156 (381)
T ss_pred             cCCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEE-------------------------------------
Confidence            23466788  577766666543   678888887777655431                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                               ..+. .+ ..++++|+|+.++.+  .++.|.+.|.... ...+  .. ......-......+.++|+| ..
T Consensus       157 ---------~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~--~~-~~~~~~~~~~P~~i~v~~~g-~~  220 (381)
T COG3391         157 ---------PVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVR--GS-VGSLVGVGTGPAGIAVDPDG-NR  220 (381)
T ss_pred             ---------ecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceec--cc-cccccccCCCCceEEECCCC-CE
Confidence                     1222 23 789999999987776  6999999997632 2221  00 00011222334778999999 65


Q ss_pred             EEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCC
Q 011368          269 LAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM  343 (487)
Q Consensus       269 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~  343 (487)
                      +.+....   +.+...|..++....   .....            +-. ....+..+|+|.++.+.. . +.+.+-|..+
T Consensus       221 ~yV~~~~~~~~~v~~id~~~~~v~~---~~~~~------------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         221 VYVANDGSGSNNVLKIDTATGNVTA---TDLPV------------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             EEEEeccCCCceEEEEeCCCceEEE---ecccc------------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            5554443   589999988875431   00111            001 346688999999988874 3 8899999876


Q ss_pred             CCceeeeeeccc
Q 011368          344 DSTPVATFKIHE  355 (487)
Q Consensus       344 ~~~~~~~~~~~~  355 (487)
                       ......+....
T Consensus       285 -~~v~~~~~~~~  295 (381)
T COG3391         285 -DRVVKTGPTGN  295 (381)
T ss_pred             -Cceeeeecccc
Confidence             55555444333

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.47  E-value=0.61  Score=42.05  Aligned_cols=119  Identities=13%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             ccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368          201 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  280 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  280 (487)
                      .....+|..|.|.|++.+.+.+..+.|+.=+..........   ...........+..++|.+++ ...++|+ .|.+ +
T Consensus       183 r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~  256 (302)
T PF14870_consen  183 RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-L  256 (302)
T ss_dssp             --SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-E
T ss_pred             cCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-E
Confidence            34567899999999998888778899988772212222111   001122233458999999887 6666555 4433 4


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  339 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw  339 (487)
                      .....++...    ....          .......+..|.|.++.+-++.|.+|.|--|
T Consensus       257 ~S~DgGktW~----~~~~----------~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  257 VSTDGGKTWQ----KDRV----------GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EESSTTSS-E----E-GG----------GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             EeCCCCccce----ECcc----------ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            4555654331    1110          0011356889999877788888988887655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.38  E-value=0.014  Score=35.67  Aligned_cols=32  Identities=19%  Similarity=0.596  Sum_probs=27.7

Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD  146 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~  146 (487)
                      ...|..++|+  |..++||.+..+|.|.+++++.
T Consensus        11 ~~~v~~~~w~--P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWC--PTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEEC--CCCCEEEEEECCCeEEEEECCC
Confidence            3779999995  6778999999999999999943

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.029  Score=57.05  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=74.5

Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~  345 (487)
                      ..++.|+..|.+...|+...-..  ..+....              .++|++++|+.+|..++.| .+|.|.+||+.. +
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v--------------~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGP--LHQNERV--------------QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccch--hhcCCcc--------------CCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence            57889999999999888764210  0011111              4789999999999999998 569999999987 7


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      ++++.+..+..+..            ++..+.+..++..++++...|.  +|.+.
T Consensus       163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            88888877666432            2235666667777888877776  56654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.17  E-value=0.72  Score=39.53  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (487)
Q Consensus        44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~  123 (487)
                      ..+++.|+..+.+.--|..+++..                                        |......+|.+-+.. 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~----------------------------------------We~ilg~RiE~sa~v-   61 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI----------------------------------------WEAILGVRIECSAIV-   61 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE----------------------------------------eehhhCceeeeeeEE-
Confidence            467888888888888888777542                                        111112445554442 


Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                        -|++++.|+..|.+++.++.+|.......                                              ...
T Consensus        62 --vgdfVV~GCy~g~lYfl~~~tGs~~w~f~----------------------------------------------~~~   93 (354)
T KOG4649|consen   62 --VGDFVVLGCYSGGLYFLCVKTGSQIWNFV----------------------------------------------ILE   93 (354)
T ss_pred             --ECCEEEEEEccCcEEEEEecchhheeeee----------------------------------------------ehh
Confidence              26789999999999999999985433210                                              011


Q ss_pred             CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCcee
Q 011368          204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  239 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~  239 (487)
                      .-.+ .....+++..|..+ .|++.+..|.++.+...
T Consensus        94 ~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   94 TVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             hhcc-ceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            1111 22346789999999 99999999998555433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.08  E-value=1.1  Score=40.74  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             cceeEEEEcCCCCEEEEEeC--CeEEEEeCCC-C----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE
Q 011368          314 ASISDIKFANDGQHLLSRDY--MNLKLWDIRM-D----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  386 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  386 (487)
                      ..-+.++||||++.|..++.  +.|.-|++.. .    ++............+              =.++...+|.+.+
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P--------------DG~~vDadG~lw~  228 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP--------------DGMAVDADGNLWV  228 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC--------------CceEEeCCCCEEE
Confidence            34578999999998888753  8888887752 1    111111111111110              1688888998886


Q ss_pred             EEcCCC-cEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          387 TGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       387 sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                      ++..+| .|.+|+.. + .....+.-....+.+++|.-
T Consensus       229 ~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         229 AAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             ecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeC
Confidence            555554 89999987 5 44566666656666666664

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.92  E-value=2.4  Score=43.56  Aligned_cols=135  Identities=8%  Similarity=0.071  Sum_probs=78.6

Q ss_pred             cEEEEEEecCCCCEEEEEeC----------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          255 VITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                      .+.++.|..+...++++|..          .|.|.++.......+    +....+           .-.+.+.++..- +
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L----~~v~e~-----------~v~Gav~aL~~f-n  839 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL----ELVAET-----------VVKGAVYALVEF-N  839 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce----eeeeee-----------eeccceeehhhh-C
Confidence            45556687663278888753          477888877662211    111110           002455555432 5


Q ss_pred             CCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-
Q 011368          325 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-  403 (487)
Q Consensus       325 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-  403 (487)
                      |+++|+-. ..|++|++.. .+.++.-..+...+               ..+...-.|..|++|.--+++.+-..+..+ 
T Consensus       840 gkllA~In-~~vrLye~t~-~~eLr~e~~~~~~~---------------~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg  902 (1096)
T KOG1897|consen  840 GKLLAGIN-QSVRLYEWTT-ERELRIECNISNPI---------------IALDLQVKGDEIAVGDLMRSITLLQYKGDEG  902 (1096)
T ss_pred             CeEEEecC-cEEEEEEccc-cceehhhhcccCCe---------------EEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence            66666533 6899999976 54454444444432               367777789999999988888776666543 


Q ss_pred             -ceeEEEeccCCccccceEe
Q 011368          404 -AGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       404 -~~~~~~~~~~~~v~~~~~~  422 (487)
                       .....-..+..+..++.+.
T Consensus       903 ~f~evArD~~p~Wmtaveil  922 (1096)
T KOG1897|consen  903 NFEEVARDYNPNWMTAVEIL  922 (1096)
T ss_pred             ceEEeehhhCccceeeEEEe
Confidence             3333334455555555554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.87  E-value=1.9  Score=41.78  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             EEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC
Q 011368          209 SISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  286 (487)
Q Consensus       209 ~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~  286 (487)
                      .+.|+|....|+.-  .|-.| ++++......++. +     + ...+.|.|.+|.+||.+++++.+..=.-.+||-.++
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cccccCCCceEEEEecCceeE-eeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            46699988887774  44433 5566543333321 1     2 245679999999999444444455556788987665


Q ss_pred             c
Q 011368          287 A  287 (487)
Q Consensus       287 ~  287 (487)
                      .
T Consensus       189 t  189 (671)
T PF15390_consen  189 T  189 (671)
T ss_pred             h
Confidence            3

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.82  E-value=1.1  Score=38.55  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=48.1

Q ss_pred             CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEE
Q 011368           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (487)
Q Consensus        43 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~  122 (487)
                      -|++++.|++.|.+++.++.++.+.                           -.+..-             +.|.+-+-.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~---------------------------w~f~~~-------------~~vk~~a~~  101 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQI---------------------------WNFVIL-------------ETVKVRAQC  101 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhhe---------------------------eeeeeh-------------hhhccceEE
Confidence            4678899999999999999998642                           111111             223332222


Q ss_pred             ecCCCcEEEEEeCCCcEEEEEccccceeE
Q 011368          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKK  151 (487)
Q Consensus       123 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  151 (487)
                       .+++.++..++.|++....|..+.....
T Consensus       102 -d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen  102 -DFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             -cCCCceEEEecCCCcEEEecccccceEE
Confidence             5788999999999999999998766543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.71  E-value=0.36  Score=46.41  Aligned_cols=124  Identities=15%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             cCCCceeEEEeCCC----C-CEEEEecCCeEEEEEccCCCceeEEeecCC-CCC-CCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          202 AHDFNINSISNNSD----C-ETFVSADDLRINLWNLEISDQCFNIVDMKP-SNM-DDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       202 ~~~~~v~~i~~s~~----~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-~~~-~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                      +.-..|..+.|.|-    . .+||.-....|.+|.+.........+-+.+ ..+ +...--...+.|+|.. ..|++-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEec
Confidence            45566899999883    3 355555888999999873211100000000 000 0011112457799997 77777766


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR  342 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~  342 (487)
                      ...-.+++++......  ...++.              .+-|.|.+|.+||+.|+.+-  .=.-++||-.
T Consensus       133 ~dvSV~~sV~~d~srV--kaDi~~--------------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRV--KADIKT--------------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceE--EEeccC--------------CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            6555566666433210  012333              57899999999999888763  3556788854

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.62  E-value=1.7  Score=39.46  Aligned_cols=129  Identities=11%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             CceeEEEeCCCCCEEEEe-c---------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          205 FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                      ...+.+...|+|.+.++. .         ...=.+|.+...+...++       +..+-..-+.++|||++ +.|+.+..
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT  182 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADT  182 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeC
Confidence            456677888888877776 4         111144544422333332       12333445789999999 66666655


Q ss_pred             -CCeEEEEEccC--CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCceee
Q 011368          275 -RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA  349 (487)
Q Consensus       275 -dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~~~~  349 (487)
                       .+.|.-|++..  +..-......+            +....+..-.++...+|.+-+++. . +.|.+|+..  ++.+.
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~------------~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~  248 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVD------------FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLG  248 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEE------------ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEE
Confidence             57888887763  21111000111            112245667788888888776543 3 499999985  78888


Q ss_pred             eeeccc
Q 011368          350 TFKIHE  355 (487)
Q Consensus       350 ~~~~~~  355 (487)
                      .+..+.
T Consensus       249 ~i~lP~  254 (307)
T COG3386         249 EIKLPV  254 (307)
T ss_pred             EEECCC
Confidence            877764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.61  E-value=1.6  Score=41.90  Aligned_cols=61  Identities=13%  Similarity=0.027  Sum_probs=38.7

Q ss_pred             CCCceeEEEeCCCCCEEEEec-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          203 HDFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                      .-..-+.|+|.||+++|++-. .|.|++++..... ...+..++......-......|+++|+
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCC
Confidence            345578999999998888885 7999999765322 222211111111112567899999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.44  E-value=0.5  Score=41.74  Aligned_cols=139  Identities=12%  Similarity=0.113  Sum_probs=82.9

Q ss_pred             ceeEEEEcCCCCEEEEEe--C--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368          315 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  390 (487)
Q Consensus       315 ~v~~v~~s~~~~~l~s~~--d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~  390 (487)
                      .+.+.+++++++.++.-.  +  ..++++...  +.....+.+..-                 +...|++++...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l-----------------~~PS~d~~g~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSL-----------------TRPSWDPDGWVWTVDDG   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCcc-----------------ccccccCCCCEEEEEcC
Confidence            688999999999887644  3  566666543  333332333321                 47899999888877777


Q ss_pred             CCcEEEEE-eCCCCceeEEEeccCC--ccccceEeeCCccccccccceeeeccc--ceecC------CCCC---cc----
Q 011368          391 SNLLRIFS-HGVGSAGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYR--QAHEN------SSSG---HH----  452 (487)
Q Consensus       391 dg~i~iwd-~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~g~~~--~~~~w------~~~~---~~----  452 (487)
                      +...+++. ..++......+.....  .|..+.++|  +|..     ++.-..+  +.++|      ....   .+    
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp--DG~R-----vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~  158 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP--DGTR-----VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR  158 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccccCCceEEEEECC--CCcE-----EEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence            77777774 3444343444443322  788888888  5554     3333222  22555      1111   11    


Q ss_pred             ccccccCCCeEEEEEcCCCCEEEEecC
Q 011368          453 ELSYNLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       453 ~~~~~~~~~v~~~~~spd~~~la~~s~  479 (487)
                      .........+++++|.+++.+++.+..
T Consensus       159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  159 RVAPPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             EecccccCcceeeeecCCCEEEEEeCC
Confidence            111133468899999999998887663

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.43  E-value=0.25  Score=48.93  Aligned_cols=31  Identities=16%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~  144 (487)
                      +.|..+.|...++++.+++.+..+.|.++.-
T Consensus        73 ~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   73 DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            7899999999999999999999999999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.26  E-value=0.17  Score=51.94  Aligned_cols=75  Identities=11%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368          202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  280 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  280 (487)
                      .-.++|++++|+.+|+.++.| .+|.|.+||+. .++..+.++..    ......|-.+.+..++ ..++++...|.  +
T Consensus       128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e~----~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f  199 (1206)
T KOG2079|consen  128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITEH----GAPVTGVIFVGRTSQN-SKLLTSDTGGS--F  199 (1206)
T ss_pred             ccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeeec----CCccceEEEEEEeCCC-cEEEEccCCCc--e
Confidence            446889999999999999999 99999999999 44555544221    1112234445555666 67777777775  6


Q ss_pred             EEcc
Q 011368          281 VDMR  284 (487)
Q Consensus       281 wd~~  284 (487)
                      |.+.
T Consensus       200 ~~lv  203 (1206)
T KOG2079|consen  200 WKLV  203 (1206)
T ss_pred             EEEE
Confidence            6554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.18  E-value=1.3  Score=41.78  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=56.4

Q ss_pred             CCceeEEEeCCCCCEEEEe-cC------------CeEEEEEccCC-Cce--eEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          204 DFNINSISNNSDCETFVSA-DD------------LRINLWNLEIS-DQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d------------~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                      -.....|+|.++|+++++. .+            ..|.+++-..+ ++.  ..++       .........+++.+++  
T Consensus        13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-------a~~l~~p~Gi~~~~~G--   83 (367)
T TIGR02604        13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-------AEELSMVTGLAVAVGG--   83 (367)
T ss_pred             cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-------ecCCCCccceeEecCC--
Confidence            3456789999999988874 21            26766654322 221  1121       1122345788888886  


Q ss_pred             EEEEEeCCCeEEEEEccCCcccc-ccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                       |++++.....++.|........ .....+.. .. ..    ...+......++|.|||.+.++
T Consensus        84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~-~~-~~----~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        84 -VYVATPPDILFLRDKDGDDKADGEREVLLSG-FG-GQ----INNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEc-cC-CC----CCcccccccCceECCCCCEEEe
Confidence             4444444433444554322111 11111121 00 00    0001345788999999987665

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.11  E-value=3.3  Score=39.79  Aligned_cols=114  Identities=11%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             eeEEEeCCCCCEEEEe--cCC----eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC----
Q 011368          207 INSISNNSDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----  276 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----  276 (487)
                      +...+++|++++++.+  ..|    .++++|++++......+       ...  ....+.|.+++ +.|+....+.    
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------~~~--~~~~~~W~~d~-~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------ENP--KFSSVSWSDDG-KGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------EEE--ESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------ccc--ccceEEEeCCC-CEEEEEEeCccccc
Confidence            4467889999999886  333    59999999653322211       111  11239999998 6665554322    


Q ss_pred             -------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e---C-CeEEEEeCCC
Q 011368          277 -------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---Y-MNLKLWDIRM  343 (487)
Q Consensus       277 -------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~---d-~~i~iwd~~~  343 (487)
                             .|..|.+.+...-  -..+|+..           ........+..++|+++|+.. .   + ..+++.|+..
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~--d~lvfe~~-----------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSE--DELVFEEP-----------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG---EEEEC-T-----------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             ccCCCCcEEEEEECCCChHh--CeeEEeec-----------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                   3666776654321  11344430           001125678899999998853 2   3 4688888875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=0.56  Score=48.67  Aligned_cols=154  Identities=10%  Similarity=-0.007  Sum_probs=92.9

Q ss_pred             CCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeec--C-CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          204 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM--K-PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      .-.+..+...+|+...++.   .+-.|..||+++-......-..  + ............++.|+|.-+...++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            4456666667777666553   4557889998843221100000  0 00112223445788999987677888889999


Q ss_pred             EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccc
Q 011368          278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      |++..+......   ...+..              ....++++|+|.|+.++.|.. |++.-|...  ......+.....
T Consensus       180 l~V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~  240 (1405)
T KOG3630|consen  180 LRVKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV  240 (1405)
T ss_pred             hhhhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc
Confidence            998876653211   122222              457899999999999999975 999888764  233333333221


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  387 (487)
                      .           ..+.|.+++|-....++++
T Consensus       241 ~-----------e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  241 E-----------ENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             C-----------CCcceeEEEEecceeEEEE
Confidence            1           1223468888777666664

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.11  E-value=2.8  Score=38.83  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=21.9

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFE   60 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~   60 (487)
                      ..+.|+|.|||+++++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            4679999999987775 5699999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.10  E-value=4.7  Score=41.43  Aligned_cols=84  Identities=17%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCC----------Cc--eeEEeecCCCCC-CCCCCcEEEEEEecCC--CCE
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEIS----------DQ--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNL  268 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~v~~v~~~p~~--~~~  268 (487)
                      .-.|..+..+|+|++++......|.|..+...          ..  ..+.+.+...-+ ......|..+.|+|.+  ...
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            35689999999999998874455555554321          11  111221111111 2344678999999973  278


Q ss_pred             EEEEeCCCeEEEEEccCCc
Q 011368          269 LAYSSSRGFVRLVDMRQSA  287 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~  287 (487)
                      |++-..|+.+|+||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9999999999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.07  E-value=3.1  Score=42.00  Aligned_cols=76  Identities=9%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             CCCceeEEEeC--CCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC--CC---EEEEEeC
Q 011368          203 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS  274 (487)
Q Consensus       203 ~~~~v~~i~~s--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~---~l~~~~~  274 (487)
                      -...++++++.  ...++||++ ....|.+|-..........     ..-..+...|.+|+|-++.  +.   .+++++-
T Consensus       162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI  236 (717)
T PF08728_consen  162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI  236 (717)
T ss_pred             cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence            45578999998  788999999 7788888866532111110     0111355668899997653  12   7778888


Q ss_pred             CCeEEEEEc
Q 011368          275 RGFVRLVDM  283 (487)
Q Consensus       275 dg~i~iwd~  283 (487)
                      .|.+.+|++
T Consensus       237 ~G~v~~~~I  245 (717)
T PF08728_consen  237 SGEVWTFKI  245 (717)
T ss_pred             cCcEEEEEE
Confidence            999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.97  E-value=2.4  Score=37.45  Aligned_cols=70  Identities=11%  Similarity=0.057  Sum_probs=43.3

Q ss_pred             ceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCce-eEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368          206 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  276 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  276 (487)
                      .|..+.++|||..++.-    .++.|.+--+.....- ...+.............+..++|.+++ .+++.+...+
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~  187 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAG  187 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCCC
Confidence            89999999999998774    3677877765432221 111111111112334678999999998 6666655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.90  E-value=0.96  Score=46.21  Aligned_cols=97  Identities=10%  Similarity=0.046  Sum_probs=57.6

Q ss_pred             cceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccc-----ccccccccCCCCcceeeEEEEcCC---CCEE
Q 011368          314 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL-----RPKLCDLYNNDSIFDKFECSVSGD---GLHF  385 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~d---~~~l  385 (487)
                      -.|..|.++|+|.+|+..+...|.|-.+......-..+.+....     .+.-..++.......|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            46889999999999997665566666553211000111111000     000011222222234578999995   5899


Q ss_pred             EEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          386 ATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       386 ~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      +.-+.|+++|+||+.......+.+.
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeEEEE
Confidence            9999999999999987655444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.88  E-value=3.2  Score=38.41  Aligned_cols=30  Identities=13%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  148 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  148 (487)
                      ....|+|.  |+|.+++ +...|.|++++ ..+.
T Consensus         3 ~P~~~a~~--pdG~l~v-~e~~G~i~~~~-~~g~   32 (331)
T PF07995_consen    3 NPRSMAFL--PDGRLLV-AERSGRIWVVD-KDGS   32 (331)
T ss_dssp             SEEEEEEE--TTSCEEE-EETTTEEEEEE-TTTE
T ss_pred             CceEEEEe--CCCcEEE-EeCCceEEEEe-CCCc
Confidence            35789995  6777655 45699999999 4443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.85  E-value=0.17  Score=29.99  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             ceeEEEEcCCC---CEEEEEeC-CeEEEEeCCC
Q 011368          315 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM  343 (487)
Q Consensus       315 ~v~~v~~s~~~---~~l~s~~d-~~i~iwd~~~  343 (487)
                      .|.++.|||+.   .+|+.+.+ +.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            68999999754   48888877 9999999984

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.84  E-value=1.3  Score=44.09  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=71.1

Q ss_pred             eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEeCCCeEEEEEc
Q 011368          207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM  283 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~iwd~  283 (487)
                      ..-+.-+.-++..++- ....+.|||.+......+      ..+ ...+.|..+.|.  |++ +.+++.+....|.+|.-
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~------~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE------ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe------eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence            3444444445555555 677899999984442222      122 346779999986  778 88888889999999854


Q ss_pred             cCCc-----cccccceeecccccccCccccccccc-cceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368          284 RQSA-----LCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIR  342 (487)
Q Consensus       284 ~~~~-----~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~s~~d~~i~iwd~~  342 (487)
                      ....     .....++.+.           +..|+ .+|.+..|.++|.+++ |+.+.+.|+|-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~-----------i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKID-----------ISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEE-----------eecCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence            3211     0001111111           12222 5789999999996555 444788898754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.80  E-value=4.6  Score=39.80  Aligned_cols=26  Identities=12%  Similarity=-0.061  Sum_probs=21.6

Q ss_pred             cEEEEEeCCCcEEEEEccccceeEee
Q 011368          128 SMFILSTNDKTIKLWKVRDQKVKKIK  153 (487)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~  153 (487)
                      ..++.++.++.|.-+|.++++.+...
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeee
Confidence            57888889999999999999876553

The alignment model contains an 8-bladed beta-propeller.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.78  E-value=0.13  Score=30.41  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=27.2

Q ss_pred             CcEEEEEEecCCC--CEEEEEeCCCeEEEEEccCC
Q 011368          254 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQS  286 (487)
Q Consensus       254 ~~v~~v~~~p~~~--~~l~~~~~dg~i~iwd~~~~  286 (487)
                      +.+.++.|+|...  .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3589999998763  58888888899999999963

It contains a characteristic DLL sequence motif.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.67  E-value=2.8  Score=36.71  Aligned_cols=157  Identities=15%  Similarity=0.105  Sum_probs=85.9

Q ss_pred             CceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          205 FNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      .-...+.|..++.++-++   ....|+.+|+.++ +......++.      .-.-..++...+  .+....=.++...+|
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~------~~FgEGit~~~d--~l~qLTWk~~~~f~y  115 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPP------RYFGEGITILGD--KLYQLTWKEGTGFVY  115 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TT------T--EEEEEEETT--EEEEEESSSSEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCc------cccceeEEEECC--EEEEEEecCCeEEEE
Confidence            345577776677777664   4558999999954 4443332221      111233444433  455555568899999


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccc
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK  360 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~  360 (487)
                      |..+-+..    ..+.-              .+.=+.++  .|++.|+..+ ...|+++|..+ .+....+.......+ 
T Consensus       116 d~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~p-  173 (264)
T PF05096_consen  116 DPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRP-  173 (264)
T ss_dssp             ETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE-
T ss_pred             ccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEE-
Confidence            99876543    33333              22335555  4566665543 48999999876 666666665443221 


Q ss_pred             cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                               +...+.+.+- +|...|=.=....|...|..+|
T Consensus       174 ---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG  205 (264)
T PF05096_consen  174 ---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETG  205 (264)
T ss_dssp             ------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred             ---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence                     1122466665 5655554445557777788777

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.42  E-value=0.027  Score=56.20  Aligned_cols=128  Identities=10%  Similarity=0.041  Sum_probs=69.0

Q ss_pred             eeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE-----------EecCCCCEEEE
Q 011368          207 INSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-----------FHPIYCNLLAY  271 (487)
Q Consensus       207 v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-----------~~p~~~~~l~~  271 (487)
                      +.-+.|.|   +.-++..+ .++.|++..+++....+         +.+|...+..++           .+||| ..++.
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l---------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~  252 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSL---------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAW  252 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHHHHH---------HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEE
Confidence            34555554   66677777 88898887776433311         223544433332           68999 99999


Q ss_pred             EeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCcee
Q 011368          272 SSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV  348 (487)
Q Consensus       272 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~  348 (487)
                      +..||.++.|.+.- ++........++.|...+..-..+-.|...+..+-+   -.++++++|  ..+++|.-.. .+++
T Consensus       253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~---w~~~Itttd~nre~k~w~~a~-w~Cl  328 (1283)
T KOG1916|consen  253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGK---WVLRITTTDVNREEKFWAEAP-WQCL  328 (1283)
T ss_pred             eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccce---eEEEEecccCCcceeEeeccc-hhhh
Confidence            99999999887652 332223335555542222111111111111111111   134556665  6789998654 4444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.14  E-value=0.25  Score=41.38  Aligned_cols=19  Identities=11%  Similarity=0.340  Sum_probs=16.6

Q ss_pred             CcEEEEEeCCCcEEEEEcc
Q 011368          127 GSMFILSTNDKTIKLWKVR  145 (487)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~  145 (487)
                      +..++.|+.+|.|.+|+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n   88 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWN   88 (238)
T ss_pred             CceEEeecccceEEEecCC
Confidence            4578999999999999887

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.06  E-value=7.3  Score=39.09  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             cceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccc
Q 011368          314 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      +.+..+..||+.++|+--. .|.|.+-+... .+.+..+.....
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~~~~  259 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNCTDH  259 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCCCCC
Confidence            5788999999999999764 49999998876 666766664433

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.91  E-value=0.96  Score=47.06  Aligned_cols=104  Identities=10%  Similarity=-0.023  Sum_probs=67.6

Q ss_pred             CCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          204 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       204 ~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      .....++.|+|.-. ..+.+ .|+.|++..+.........        .......++++|+|.| +.++.|-..|++.-|
T Consensus       155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy  225 (1405)
T KOG3630|consen  155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQY  225 (1405)
T ss_pred             ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEe
Confidence            34456888988633 33445 8999988877633322211        1234568999999999 999999999999888


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      ...-...     +.+..   ++...      ...|.+|+|-....++++
T Consensus       226 ~P~leik-----~~ip~---Pp~~e------~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  226 EPSLEIK-----SEIPE---PPVEE------NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eccccee-----ecccC---CCcCC------CcceeEEEEecceeEEEE
Confidence            6543211     11111   11111      368999999988888875

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.87  E-value=5.3  Score=36.88  Aligned_cols=119  Identities=12%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             CCceeEEEeCC-CCCEEEEecCCe------EEEEEccCCC---ceeEEeecCCCCCCCCC--------CcEEEEEEecCC
Q 011368          204 DFNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFNIVDMKPSNMDDLT--------EVITSAEFHPIY  265 (487)
Q Consensus       204 ~~~v~~i~~s~-~~~~l~s~~d~~------i~iwd~~~~~---~~~~~~~~~~~~~~~~~--------~~v~~v~~~p~~  265 (487)
                      -+.+..+.+.+ ++.+++.++++.      +...++....   ..+....  ...+....        .-.-++++.++|
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD--MIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc--ceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            45678889985 555555567666      6666655311   1111111  01111111        134577887777


Q ss_pred             CCEEEEEeCC------CeEEEEEccCCccccccceeeccc-ccccCcc-ccccccccceeEEEEcCCCCEEEE
Q 011368          266 CNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDA-AESHGSK-SFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       266 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                       .++++.-.+      ..|..++.. ++..    ..+..- ...+... ..-...+..+.+|+++|+|+.|++
T Consensus        97 -~~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   97 -SFWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             -CEEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence             777776667      778888866 4432    222110 0000000 011123568999999999995554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.82  E-value=5  Score=40.59  Aligned_cols=122  Identities=17%  Similarity=0.143  Sum_probs=70.6

Q ss_pred             CceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCC-----------ceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCE
Q 011368          205 FNINSISNNS--DCETFVSA-DDLRINLWNLEISD-----------QCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNL  268 (487)
Q Consensus       205 ~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~  268 (487)
                      ..|+.|....  +...|+.| +||.|.+|.++.--           .......++|.-.......+++++++  ... .+
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eE
Confidence            3455555433  55677778 99999999764210           00000111222122234578999998  776 88


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-----C-EEEEEe-CCeEEEEeC
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRD-YMNLKLWDI  341 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-----~-~l~s~~-d~~i~iwd~  341 (487)
                      ||+++....|.||-............   .|           .|...|.+|.|-++.     . +|++++ .|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~---s~-----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVP---SH-----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEecccccccccc---cc-----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            89888888888886655211100000   10           134578889886543     2 444455 388888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=93.80  E-value=5.6  Score=36.88  Aligned_cols=119  Identities=8%  Similarity=-0.018  Sum_probs=69.6

Q ss_pred             cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      .-...++++.+.++++.++++..|.+.+=..+ .+...+....+   .......+..+.+.|++ ..+ .++.+|.+. .
T Consensus       212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~-~  284 (334)
T PRK13684        212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIW-AGGGNGTLL-V  284 (334)
T ss_pred             CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEE-EEcCCCeEE-E
Confidence            34567899999999998888877776532233 34333321000   00112357888999886 554 455667554 3


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  341 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~  341 (487)
                      ....++..    ......          .+-......+.|..+++.+++|..|.|-.|+-
T Consensus       285 S~d~G~tW----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        285 SKDGGKTW----EKDPVG----------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             eCCCCCCC----eECCcC----------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            44444322    111100          00123578888888888888888899888764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.46  E-value=4.3  Score=34.48  Aligned_cols=143  Identities=11%  Similarity=0.038  Sum_probs=80.6

Q ss_pred             CCceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          204 DFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                      ..+.++-..+|+|++++-. .|         |.++.|-..  .+.-.+        ...-..-..++|+.+...+.+.-+
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence            4566777789999996554 33         334444333  111111        011122356889988734444555


Q ss_pred             CCCeEEEEE--ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          274 SRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       274 ~dg~i~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      .+-.|.-||  +.++..... ...+......+..       ......++...+|.+.+++- .++|...|..+ ++.+.+
T Consensus       178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e  248 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE  248 (310)
T ss_pred             CceEEeeeecCCCcccccCc-ceeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence            677787787  666653321 1222221111100       11223455566787777764 49999999988 888888


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG  380 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  380 (487)
                      ++.....+               +++||--
T Consensus       249 iklPt~qi---------------tsccFgG  263 (310)
T KOG4499|consen  249 IKLPTPQI---------------TSCCFGG  263 (310)
T ss_pred             EEcCCCce---------------EEEEecC
Confidence            88775533               6888863

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.39  E-value=3.2  Score=38.97  Aligned_cols=36  Identities=8%  Similarity=-0.133  Sum_probs=22.4

Q ss_pred             CCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCcee
Q 011368          204 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF  239 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~  239 (487)
                      ..-|++|..|.|.++|..+  ..|.|+.||+.......
T Consensus       311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK  348 (461)
T ss_dssp             ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred             CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence            4568999999999999776  89999999998765543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.30  E-value=6.5  Score=37.07  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=13.9

Q ss_pred             cEEEEEEcCCCCEEEEE
Q 011368           34 IVSAIEFDKTGDYLAVG   50 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g   50 (487)
                      ....|+|.++|+++++-
T Consensus        15 ~P~~ia~d~~G~l~V~e   31 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAE   31 (367)
T ss_pred             CCceeeECCCCCEEEEe
Confidence            46689999999987764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.30  E-value=0.73  Score=39.56  Aligned_cols=79  Identities=9%  Similarity=0.073  Sum_probs=52.4

Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  340 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd  340 (487)
                      +...+ .++++.+.+|.+++||+.+++........... -.......  ......|..+.++.+|.-+++-++|..+.|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            44566 88999999999999999998754332111111 00000000  0235678999999999888887788889998


Q ss_pred             CCC
Q 011368          341 IRM  343 (487)
Q Consensus       341 ~~~  343 (487)
                      ...
T Consensus        94 ~~L   96 (219)
T PF07569_consen   94 PDL   96 (219)
T ss_pred             ccc
Confidence            764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.25  E-value=2.7  Score=39.97  Aligned_cols=140  Identities=11%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             CEEEE-EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC--------CEEEEEeCCeEE
Q 011368          267 NLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLK  337 (487)
Q Consensus       267 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~--------~~l~s~~d~~i~  337 (487)
                      ++|+. ++....+.-.|++.|+.+    ..|..|              ..+ -+.|.|..        +.|+.-++..|.
T Consensus       480 sli~~dg~~~~kLykmDIErGkvv----eeW~~~--------------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svF  540 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVV----EEWDLK--------------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVF  540 (776)
T ss_pred             ceEEecCCCcccceeeecccceee----eEeecC--------------Ccc-eeecCCchhHHhcCccceEEeecccceE
Confidence            44443 445567777788888766    667663              233 56777753        234444666666


Q ss_pred             EEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccc
Q 011368          338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  417 (487)
Q Consensus       338 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  417 (487)
                      -.|.+..+..+...........         --   ++......+.+||+||..|-|++||.-.. .             
T Consensus       541 rIDPR~~gNKi~v~esKdY~tK---------n~---Fss~~tTesGyIa~as~kGDirLyDRig~-r-------------  594 (776)
T COG5167         541 RIDPRARGNKIKVVESKDYKTK---------NK---FSSGMTTESGYIAAASRKGDIRLYDRIGK-R-------------  594 (776)
T ss_pred             EecccccCCceeeeeehhcccc---------cc---ccccccccCceEEEecCCCceeeehhhcc-h-------------
Confidence            6676654544433332221100         00   12222235569999999999999996532 1             


Q ss_pred             cceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368          418 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  484 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i  484 (487)
                      +-.                                 .+.++...|..+..+.+|++|.+.|.+.+.+
T Consensus       595 AKt---------------------------------alP~lG~aIk~idvta~Gk~ilaTCk~yllL  628 (776)
T COG5167         595 AKT---------------------------------ALPGLGDAIKHIDVTANGKHILATCKNYLLL  628 (776)
T ss_pred             hhh---------------------------------cCcccccceeeeEeecCCcEEEEeecceEEE
Confidence            111                                 1223344778888999999988888877655

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.22  E-value=0.22  Score=50.10  Aligned_cols=123  Identities=11%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             cceeEEEEEec-CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..+.-|.|+|. ++..++..+-.++++++.+++......                                         
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l-----------------------------------------  219 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSL-----------------------------------------  219 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHHHH-----------------------------------------
Confidence            44567778763 344556666688899988776543211                                         


Q ss_pred             cceeeeecccCCCceeEEE-----------eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-cEEEE
Q 011368          193 NMATKVYPHAHDFNINSIS-----------NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSA  259 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~-----------~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~v  259 (487)
                             +.+|...+..++           .+|||+.++.+ .||.++.|.+--.++...-.   .+..+.|.+ +-.|.
T Consensus       220 -------~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rc---lhewkphd~~p~vC~  289 (1283)
T KOG1916|consen  220 -------FRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRC---LHEWKPHDKHPRVCW  289 (1283)
T ss_pred             -------HHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhh---hhccCCCCCCCceee
Confidence                   133444443332           58999999999 99999999876444322111   123455652 22232


Q ss_pred             EEecCC------C--CEEEEEe-CCCeEEEEEccCCc
Q 011368          260 EFHPIY------C--NLLAYSS-SRGFVRLVDMRQSA  287 (487)
Q Consensus       260 ~~~p~~------~--~~l~~~~-~dg~i~iwd~~~~~  287 (487)
                      -++.+.      +  .++++++ .+..+++|....-+
T Consensus       290 lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  290 LCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ  326 (1283)
T ss_pred             eeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence            244221      0  2333433 35678888766543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.11  E-value=8.4  Score=36.82  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=63.4

Q ss_pred             EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecc
Q 011368          220 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  298 (487)
Q Consensus       220 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  298 (487)
                      +.| .+..|.-.|.+..+..+.....+.  ..+ .....|..-...  -++|+++..|-|++||.-..+..    ..   
T Consensus       531 lvGlS~~svFrIDPR~~gNKi~v~esKd--Y~t-Kn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----ta---  598 (776)
T COG5167         531 LVGLSDYSVFRIDPRARGNKIKVVESKD--YKT-KNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TA---  598 (776)
T ss_pred             EEeecccceEEecccccCCceeeeeehh--ccc-cccccccccccC--ceEEEecCCCceeeehhhcchhh----hc---
Confidence            345 777777778776665444332221  111 112233333344  49999999999999986543211    11   


Q ss_pred             cccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368          299 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  342 (487)
Q Consensus       299 h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~  342 (487)
                                +++....|..+..+.+|+++++.....+.+-|++
T Consensus       599 ----------lP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         599 ----------LPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             ----------CcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                      2223467899999999999988766788888875

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=92.94  E-value=16  Score=39.45  Aligned_cols=74  Identities=15%  Similarity=0.260  Sum_probs=39.3

Q ss_pred             eEEEEcCCCCEEEEEeC-CeE-EEEeCCCCCceeeeeeccccccc----ccccccC------CCC-cceeeEEEEcCCCC
Q 011368          317 SDIKFANDGQHLLSRDY-MNL-KLWDIRMDSTPVATFKIHEHLRP----KLCDLYN------NDS-IFDKFECSVSGDGL  383 (487)
Q Consensus       317 ~~v~~s~~~~~l~s~~d-~~i-~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~-~~~~~~~~~s~d~~  383 (487)
                      .+++++++|.+.++-+| ..| ++-.+.+ ...+..+.+......    .-|+.++      .+. .....++|.+|||.
T Consensus       596 r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~  674 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD  674 (1899)
T ss_pred             hceeecCCceEEEEeccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence            78999999987777655 222 3333444 335666655443211    1122111      111 11235788888888


Q ss_pred             EEEEEcCC
Q 011368          384 HFATGSYS  391 (487)
Q Consensus       384 ~l~sg~~d  391 (487)
                      .+++-..+
T Consensus       675 v~IAD~gN  682 (1899)
T KOG4659|consen  675 VIIADSGN  682 (1899)
T ss_pred             EEEecCCc
Confidence            76654443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.82  E-value=0.5  Score=39.70  Aligned_cols=65  Identities=11%  Similarity=0.103  Sum_probs=40.8

Q ss_pred             CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE-EecCCCCEEEEEeCCCeEEEEEccCCcc
Q 011368          216 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-FHPIYCNLLAYSSSRGFVRLVDMRQSAL  288 (487)
Q Consensus       216 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~~p~~~~~l~~~~~dg~i~iwd~~~~~~  288 (487)
                      +..+++| .+|.|++|...-.+.....       .......|.++. --.++ .+..++..+|.|+.|++.-.+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence            5677788 9999999988733332211       111122233322 22233 5888999999999999887653

>PHA02713 hypothetical protein; Provisional

Probab=92.68  E-value=6.1  Score=39.62  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=19.1

Q ss_pred             CCCEEEEEcCCC--cEEEEEeCCCCc
Q 011368          381 DGLHFATGSYSN--LLRIFSHGVGSA  404 (487)
Q Consensus       381 d~~~l~sg~~dg--~i~iwd~~~~~~  404 (487)
                      +|+..++||.||  .+..||..+.+-
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccc
Confidence            788888999888  777888877644

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.57  E-value=0.97  Score=38.79  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .++..+.    .++.++++.+.+|.+++||+..++...... ...+             ++..                .
T Consensus        13 s~~~~l~----~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~p-------------ll~~----------------~   58 (219)
T PF07569_consen   13 SPVSFLE----CNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAP-------------LLNS----------------S   58 (219)
T ss_pred             CceEEEE----eCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHH-------------Hhcc----------------c
Confidence            4455555    357889999999999999999876532210 0000             0000                0


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEcc
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE  233 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~  233 (487)
                      . .  .-......|..+..+.+|.-+++-.+|..+.|+.+
T Consensus        59 ~-~--~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   59 P-V--SDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             c-c--ccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            0 0  00145677888999988887776677889999887

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.39  E-value=13  Score=37.35  Aligned_cols=29  Identities=17%  Similarity=0.114  Sum_probs=25.5

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          374 FECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       374 ~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..+..||+.++|+--...|.|.+-+....
T Consensus       220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  220 VKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             EEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            48999999999999999999999888755

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.24  E-value=6.3  Score=33.23  Aligned_cols=49  Identities=14%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      ..|..+...+.|.+|++.+..  ......|..              -+.|..+.++..|+||++-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~T--------------v~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE--CPLLCTFST--------------VGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC--CceeEEEcc--------------hhheeEEEeccccceEEEE
Confidence            345444677789999998432  222355555              4789999999999999985

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.23  E-value=11  Score=36.20  Aligned_cols=33  Identities=9%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCC
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~   64 (487)
                      -+..+.|+|.|||++|++--..|.|++++..++
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            346789999999988877654699999875544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.16  E-value=11  Score=34.05  Aligned_cols=145  Identities=13%  Similarity=0.082  Sum_probs=72.3

Q ss_pred             EEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368          210 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       210 i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      +....++..++++..|.  ||.....++..+.+      ..+....+..+.-+++| .++++++....+.-||.-..   
T Consensus       109 i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~---  176 (302)
T PF14870_consen  109 ITALGDGSAELAGDRGA--IYRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQT---  176 (302)
T ss_dssp             EEEEETTEEEEEETT----EEEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S---
T ss_pred             EEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCc---
Confidence            33333444444444454  44445466655543      23344678888899999 88888877666777875542   


Q ss_pred             cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCC
Q 011368          290 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS  369 (487)
Q Consensus       290 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (487)
                           .+..|..         .-...|..|.|.|++.+.+.+..|.|++=+..   .....+..+..++.        ..
T Consensus       177 -----~w~~~~r---------~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~--------~~  231 (302)
T PF14870_consen  177 -----TWQPHNR---------NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIK--------TN  231 (302)
T ss_dssp             -----S-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTS--------S-
T ss_pred             -----cceEEcc---------CccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCcc--------cC
Confidence                 2333211         11467999999999988777766888887722   11222222111100        01


Q ss_pred             cceeeEEEEcCCCCEEEEEcCC
Q 011368          370 IFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       370 ~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      -+.+.+++|.+++...++|+..
T Consensus       232 ~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  232 GYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             -S-EEEEEESSSS-EEEEESTT
T ss_pred             ceeeEEEEecCCCCEEEEeCCc
Confidence            1123589999998887766654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.95  E-value=5  Score=38.34  Aligned_cols=126  Identities=21%  Similarity=0.167  Sum_probs=64.9

Q ss_pred             CeEEEEeCCCCCceeeeeeccccccccc------ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKL------CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      ..+..||-+..--.+..+++........      --.......+.|..+..++.|..++-.|.+|.+.++=.+.-+ ...
T Consensus        61 D~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s  139 (741)
T KOG4460|consen   61 DELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNS  139 (741)
T ss_pred             CEEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccc
Confidence            3788888764222333444322211100      012233345566788999999999999998866544322211 122


Q ss_pred             EEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCC---CEEE-EecCCeEE
Q 011368          408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT---NLIA-CANGNSLF  483 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~---~~la-~~s~~~~~  483 (487)
                      .++..+..|++..+.-.  .++      .+                 . ...-.+..++|||+.   .+|. -.+++-+.
T Consensus       140 ~~eDgk~~v~CRt~~i~--~~~------ft-----------------s-s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviR  193 (741)
T KOG4460|consen  140 EFEDGKSTVNCRTTPVA--ERF------FT-----------------S-STSLTLKQAAWHPSSILDPHLVLLTSDNVIR  193 (741)
T ss_pred             eecCCCceEEEEeeccc--cee------ec-----------------c-CCceeeeeccccCCccCCceEEEEecCcEEE
Confidence            33333333444444321  111      11                 1 112256788999986   4454 55566688


Q ss_pred             EEe
Q 011368          484 FHY  486 (487)
Q Consensus       484 i~~  486 (487)
                      +|+
T Consensus       194 iy~  196 (741)
T KOG4460|consen  194 IYS  196 (741)
T ss_pred             EEe
Confidence            886

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.32  E-value=17  Score=34.57  Aligned_cols=114  Identities=11%  Similarity=0.078  Sum_probs=68.2

Q ss_pred             cCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCce-----eEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368          202 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC-----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  276 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  276 (487)
                      .....+..+.+.+++..++++.+|.+..= .. .+..     +..+     ........+..+.|.+++ . ++.++..|
T Consensus       278 ~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~-~~a~G~~G  348 (398)
T PLN00033        278 ASARRIQNMGWRADGGLWLLTRGGGLYVS-KG-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-E-AWAAGGSG  348 (398)
T ss_pred             CCccceeeeeEcCCCCEEEEeCCceEEEe-cC-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-c-EEEEECCC
Confidence            34556889999999999988877776443 33 2221     1111     111122458889999886 5 55555667


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  339 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw  339 (487)
                      .+... ...++.       |+.- ..      -.+....++.+.|.++++.+++|.+|.|.-|
T Consensus       349 ~v~~s-~D~G~t-------W~~~-~~------~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        349 ILLRS-TDGGKS-------WKRD-KG------ADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             cEEEe-CCCCcc-------eeEc-cc------cCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            65554 344432       2210 00      0111346889999988999999988887655

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.21  E-value=15  Score=33.90  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             ceeEEEeCCCCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCC--------CCCCCCCcEEEEEEecCCCCEEE
Q 011368          206 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                      ..-+|++.+++.++++. .+      ..|..++..  +.....+.++..        .-...+....+|+++|+| +.|+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF  162 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence            45678887889888888 77      888888876  333333322211        112345678999999999 7566


Q ss_pred             EEeC-----CC--e-------EEEEEccCCc---cccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          271 YSSS-----RG--F-------VRLVDMRQSA---LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       271 ~~~~-----dg--~-------i~iwd~~~~~---~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      ++.+     |+  .       ++++......   ..    ..+.-..+.+...    .....+..+.+-+++++|+-
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~----~~~~y~ld~~~~~----~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPV----AEYAYPLDPPPTA----PGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccc----eEEEEeCCccccc----cCCCCceeEEEECCCcEEEE
Confidence            5543     22  1       4555443221   11    1111100000000    02467889999999998775

>PHA02713 hypothetical protein; Provisional

Probab=90.18  E-value=6  Score=39.67  Aligned_cols=65  Identities=5%  Similarity=0.078  Sum_probs=34.9

Q ss_pred             CCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC--eEEEEEccC
Q 011368          215 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ  285 (487)
Q Consensus       215 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~  285 (487)
                      +++..+.| .+      ..+..||.++.. .+..+    ..+.........+.+  ++ .+.++|+.++  .+..||..+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~-~W~~~----~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYN-GWELI----TTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCC-CeeEc----cccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence            45666665 43      246678887411 22221    122222222222222  45 8889999888  677788777


Q ss_pred             Cc
Q 011368          286 SA  287 (487)
Q Consensus       286 ~~  287 (487)
                      .+
T Consensus       535 ~~  536 (557)
T PHA02713        535 YE  536 (557)
T ss_pred             cc
Confidence            54

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.17  E-value=3.2  Score=38.82  Aligned_cols=167  Identities=11%  Similarity=-0.010  Sum_probs=89.5

Q ss_pred             ccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeE-EeecCCCCCCC-CCCcEE-EEEEecCCCCEEEEEeCCCe
Q 011368          201 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~-~v~~~p~~~~~l~~~~~dg~  277 (487)
                      ..-...|..+-..|||+.+..-...++.++++.+.....+ +.+..    ++ ....|+ .+..-..| .-+++++.||.
T Consensus       217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~  291 (733)
T COG4590         217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGL  291 (733)
T ss_pred             CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCc
Confidence            4455677788889999999887557888888874332211 11000    11 001111 11122334 77888899998


Q ss_pred             EEEE-EccCCc-cccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecc
Q 011368          278 VRLV-DMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       278 i~iw-d~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~  354 (487)
                      |.-| |.+.+. ...++++.++-.             ...+..+.--.+.+-+++-+ .|++.++.... .+++-.-...
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~-------------pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~  357 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLA-------------PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAY  357 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccC-------------cccceeeccccccceEEEEcCCCceeeeeccc-Ccceehhhhh
Confidence            8877 555432 112222333220             12232222222233333333 37777766543 3333222222


Q ss_pred             cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      +..                .-+++||++.++++-. .|.|+++.+++..
T Consensus       358 ~~~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         358 QAP----------------QLVAMSPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             cCc----------------ceeeeCcccchheeec-CCceEEEEecCCC
Confidence            222                2689999999988543 4789999998763

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.82  E-value=23  Score=35.32  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=21.8

Q ss_pred             cCCC--CEEEEEeCCCeEEEEEccCCccc
Q 011368          263 PIYC--NLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       263 p~~~--~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      .+|.  ..++.+..+|.+.+.|.++++.+
T Consensus       310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            4552  37888999999999999999864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.35  E-value=12  Score=35.20  Aligned_cols=131  Identities=11%  Similarity=0.020  Sum_probs=77.5

Q ss_pred             eeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC
Q 011368          207 INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  286 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~  286 (487)
                      -+.+-|...++.|++...|.+.-|-+...+..+.+     .--....++|.++.|++|. +.||+--.++.|.+++....
T Consensus        25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d   98 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD   98 (657)
T ss_pred             ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence            34455554444555447777777777644322211     0011234589999999999 99999999999999988543


Q ss_pred             ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccc
Q 011368          287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      +........-+.             -+..|....|+.+ .-+|--.+..+-+|......+.++..+.+...
T Consensus        99 ~~~l~~~~~ck~-------------k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~n  155 (657)
T KOG2377|consen   99 NSQLEYTQECKT-------------KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLN  155 (657)
T ss_pred             chhhHHHHHhcc-------------CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccC
Confidence            322111111111             1345888899866 45555555556677665545556666655543

>PRK13684 Ycf48-like protein; Provisional

Probab=88.70  E-value=20  Score=33.23  Aligned_cols=158  Identities=10%  Similarity=0.024  Sum_probs=86.9

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  283 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~  283 (487)
                      ...+.++.+.|++.+++++..|.+..- .+..+..+..+      .......++++.+.+++ ..++++ ..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence            456889999999888888877766532 22233333322      11234568899999988 666654 5576543233


Q ss_pred             cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccccccc
Q 011368          284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      ..+..       +... ..+..     .....+.++.+.+++..++++.+|.+.. .... ++.-..........     
T Consensus       243 d~G~s-------W~~~-~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~-G~tW~~~~~~~~~~-----  302 (334)
T PRK13684        243 DDLES-------WSKP-IIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDG-GKTWEKDPVGEEVP-----  302 (334)
T ss_pred             CCCCc-------cccc-cCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCCC-CCCCeECCcCCCCC-----
Confidence            44432       2210 00000     0023578899999988888887776653 3322 33322222111110     


Q ss_pred             ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          364 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                             ...+.+.|..+++.++ .+..|.|.-|+
T Consensus       303 -------~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        303 -------SNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             -------cceEEEEEeCCCceEE-ECCCceEEEec
Confidence                   0114677776666655 55667777665

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.64  E-value=11  Score=36.22  Aligned_cols=83  Identities=8%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             cEEEEEEecCCCCEEEEEeCCCeEEEEEccC-Cc---ccccc----ceeecccccccCccccccccccceeEEEEcCCC-
Q 011368          255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SA---LCDHS----ARILRDAAESHGSKSFFTEIIASISDIKFANDG-  325 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~---~~~~~----~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-  325 (487)
                      .|..+..++.| ..++..+.+|.+.++=.+. |+   .-+.+    .+++..     ..+-+...-.-.+..++|+|++ 
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-----~~~~ftss~~ltl~Qa~WHP~S~  178 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-----AERFFTSSTSLTLKQAAWHPSSI  178 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-----cceeeccCCceeeeeccccCCcc
Confidence            47788889999 8888888898665543111 11   00000    011111     1111111112356788999976 


Q ss_pred             ---CEEEEEeCCeEEEEeCCC
Q 011368          326 ---QHLLSRDYMNLKLWDIRM  343 (487)
Q Consensus       326 ---~~l~s~~d~~i~iwd~~~  343 (487)
                         .+++-.+|+.||+||+..
T Consensus       179 ~D~hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  179 LDPHLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             CCceEEEEecCcEEEEEecCC
Confidence               344556789999999975

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.34  E-value=10  Score=29.30  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=73.0

Q ss_pred             EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      ..-.|.....-|+++..-|+|.|.+.......                              ..+  .-..+..+.+...
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~------------------------------~~~--~~~~i~~LNin~~   49 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR------------------------------TGR--QDSDISFLNINQE   49 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccc------------------------------ccc--ccCceeEEECCCc
Confidence            34467777778999999999999986544321                              000  0012344444577


Q ss_pred             eeEEEEEe---cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          116 INRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       116 I~~v~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      |++|+--+   ..+.+.|+.|+. ..+..||+....-..                                         
T Consensus        50 italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~F-----------------------------------------   87 (136)
T PF14781_consen   50 ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLF-----------------------------------------   87 (136)
T ss_pred             eEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhh-----------------------------------------
Confidence            88886433   334556666654 579999998765322                                         


Q ss_pred             cceeeeecccCCCceeEEEeC---C-CCCEEEEecCCeEEEEEcc
Q 011368          193 NMATKVYPHAHDFNINSISNN---S-DCETFVSADDLRINLWNLE  233 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s---~-~~~~l~s~~d~~i~iwd~~  233 (487)
                             ...-.+.|+++.+-   . +..+++.|.+..|.-+|.+
T Consensus        88 -------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   88 -------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             -------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence                   13445667777662   2 4556666788888888877

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.34  E-value=22  Score=33.27  Aligned_cols=151  Identities=11%  Similarity=0.059  Sum_probs=80.5

Q ss_pred             CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE--ec-CCCCEEEEEeCCCeEEEEEcc---CCccccccceeecc
Q 011368          225 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HP-IYCNLLAYSSSRGFVRLVDMR---QSALCDHSARILRD  298 (487)
Q Consensus       225 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p-~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~  298 (487)
                      .+|++|.+......+..+......+..-...++.+++  +| +|..+.++...+|.+..|.+.   ++......++.|..
T Consensus       127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            5799998873323333221110111112234666665  34 352466667788988888775   33333344566666


Q ss_pred             cccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCce----eeeeecccccccccccccCCCCccee
Q 011368          299 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDK  373 (487)
Q Consensus       299 h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (487)
                                    ...+..|+......+|..+.. --|+-|+.+.....    +....+ ...            .-++
T Consensus       207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l------------~aDv  259 (381)
T PF02333_consen  207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGL------------VADV  259 (381)
T ss_dssp             --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB-------------S-E
T ss_pred             --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc-ccc------------ccCc
Confidence                          467899999988888988864 77777887632211    111111 111            1122


Q ss_pred             eEEEEc--CCC-CEEEEEc-CCCcEEEEEeCCC
Q 011368          374 FECSVS--GDG-LHFATGS-YSNLLRIFSHGVG  402 (487)
Q Consensus       374 ~~~~~s--~d~-~~l~sg~-~dg~i~iwd~~~~  402 (487)
                      -.+++-  +++ .||++.+ .+++..||+.+..
T Consensus       260 EGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  260 EGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             cceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            355553  344 3555444 5678999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=88.25  E-value=31  Score=34.79  Aligned_cols=152  Identities=11%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             EEEeCCCCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-----
Q 011368          209 SISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----  276 (487)
Q Consensus       209 ~i~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----  276 (487)
                      +++.. ++.+.++| .|      .++..||.....  +..+    ..+........ ++. -+| .+.++|+.||     
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~----a~M~~~R~~~~-v~~-l~g-~iYavGG~dg~~~l~  396 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPV----APMNTKRSDFG-VAV-LDG-KLYAVGGFDGEKSLN  396 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--eecc----CCccCccccce-eEE-ECC-EEEEEeccccccccc
Confidence            34443 35666776 66      456778877443  2211    12222222111 111 245 7888898886     


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C------CeEEEEeCCCCC-cee
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y------MNLKLWDIRMDS-TPV  348 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d------~~i~iwd~~~~~-~~~  348 (487)
                      .+..||..+.+.        ..  ..+     +.........+.  -+|+..++|+ +      .++..||..+.. ..+
T Consensus       397 svE~YDp~~~~W--------~~--va~-----m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  397 SVECYDPVTNKW--------TP--VAP-----MLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             cEEEecCCCCcc--------cc--cCC-----CCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            477777776542        11  000     000011222222  2466666653 2      568888887521 222


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCc-----EEEEEeCCCCc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-----LRIFSHGVGSA  404 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~-----i~iwd~~~~~~  404 (487)
                      ..+......                ..++.- ++...+.||.|+.     |..||..+.+.
T Consensus       460 ~~M~~~R~~----------------~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  460 APMNTRRSG----------------FGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             CCccccccc----------------ceEEEE-CCEEEEECCccCCCccceEEEEcCCCCce
Confidence            222222211                133332 6777788887763     67788776644

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.05  E-value=18  Score=31.83  Aligned_cols=195  Identities=14%  Similarity=0.095  Sum_probs=115.6

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      .+||..-+++...+.|--.|-.+++....                                               ..+.
T Consensus        70 apdG~VWft~qg~gaiGhLdP~tGev~~y-----------------------------------------------pLg~  102 (353)
T COG4257          70 APDGAVWFTAQGTGAIGHLDPATGEVETY-----------------------------------------------PLGS  102 (353)
T ss_pred             CCCCceEEecCccccceecCCCCCceEEE-----------------------------------------------ecCC
Confidence            67888888888888888888888876544                                               1344


Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--------
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------  275 (487)
                      ...-..|...|||..-++-....|.-.|-++.  .++.+.   ...+.-........|++.| .+-.++...        
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~---lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa  176 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFP---LPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPA  176 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcceeEEecCccc--ceEEee---cccccCCCcccceeeCCCc-cEEEeeccccceecCcc
Confidence            45556777888887766642224444454422  222221   1233344567788999999 887777532        


Q ss_pred             -CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeec
Q 011368          276 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       276 -g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~  353 (487)
                       +.|++|+.-.+                           ..-..|+..|||..-++. .++.|-..|..+ + .-..+..
T Consensus       177 ~~~i~vfpaPqG---------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~  227 (353)
T COG4257         177 RNVISVFPAPQG---------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQ  227 (353)
T ss_pred             cCceeeeccCCC---------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecC
Confidence             23444433322                           345778899999877765 335666666654 2 2222222


Q ss_pred             ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      .+....            +-+.+--+|.|+.-++-...+.+.-+|-.+..-....|.+.
T Consensus       228 P~~~~~------------gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs  274 (353)
T COG4257         228 PNALKA------------GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS  274 (353)
T ss_pred             CCcccc------------cccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC
Confidence            211000            00255666788888887778888888887664444444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.99  E-value=4.2  Score=33.44  Aligned_cols=31  Identities=29%  Similarity=0.241  Sum_probs=25.5

Q ss_pred             cEEEEEEecCC-----CCEEEEEeCCCeEEEEEccC
Q 011368          255 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ  285 (487)
Q Consensus       255 ~v~~v~~~p~~-----~~~l~~~~~dg~i~iwd~~~  285 (487)
                      .+.+++|+|.|     .-+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999964     24788889999999997664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.76  E-value=34  Score=37.07  Aligned_cols=175  Identities=14%  Similarity=0.140  Sum_probs=89.0

Q ss_pred             eEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE--------EecCCCCEEEEEeCCCeEE
Q 011368          208 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE--------FHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       208 ~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--------~~p~~~~~l~~~~~dg~i~  279 (487)
                      ..+-+-|.=+..-...|+.+.+|+.++++...        .+.+-...|..|.        |.|.= +++++....-.|.
T Consensus        82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~--------~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~  152 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELA--------EYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIV  152 (1311)
T ss_pred             eeeccchhhcceEEEeCCeEEEEEcCCCCccc--------cccchhhhheeeeeecCCCCcchhhh-heeEEecccceEE
Confidence            33444454344444478899999999644432        1233334444443        33333 3444444444555


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEE--eCCCC--Cceeeeeec--
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW--DIRMD--STPVATFKI--  353 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iw--d~~~~--~~~~~~~~~--  353 (487)
                      |+-+.-.+.... ...|..+       -...-....|.++....+|+.+++|.||.|+=.  ....+  ++.-..+..  
T Consensus       153 ilgV~~~~~~~~-~~~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~  224 (1311)
T KOG1900|consen  153 ILGVSFDEFTGE-LSIFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTK  224 (1311)
T ss_pred             EEEEEeccccCc-ccccccc-------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCch
Confidence            654433221100 0112110       000011357889998999999999988844422  22110  000000000  


Q ss_pred             --ccccccccccc--cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          354 --HEHLRPKLCDL--YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       354 --~~~~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                        -...++.+..+  .+.+.+   ..+.+......+.+-+..|+|.+|++...
T Consensus       225 s~ls~lvPs~~~~~~~~~dpI---~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  225 SVLSSLVPSLLSVPGSSKDPI---RQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hHHHHhhhhhhcCCCCCCCcc---eeeEeccccceeeeeccCceEEEEEccCC
Confidence              00111111111  123344   58888877888899999999999999873

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.65  E-value=21  Score=32.23  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=92.0

Q ss_pred             eeEEEeCCCCCEEEE--e-c----------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC----CEE
Q 011368          207 INSISNNSDCETFVS--A-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NLL  269 (487)
Q Consensus       207 v~~i~~s~~~~~l~s--~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~l  269 (487)
                      |..+...+++++-+.  | .          .-.|.+||+.+. +.++.+.++..... ..+.+..+.+.....    .+.
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~-~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTN-QLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTT-CEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCC-cEEEEEECChHHcc-cccccceEEEEccCCCCcceEE
Confidence            455556655655544  2 1          127889999954 46777666544444 456788888886321    122


Q ss_pred             -EEEeCCCeEEEEEccCCccccccceeecccccccCcc-ccc------cccccceeEEEEcC---CCCEEEEEeCCeEEE
Q 011368          270 -AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKL  338 (487)
Q Consensus       270 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-~~~------~~~~~~v~~v~~s~---~~~~l~s~~d~~i~i  338 (487)
                       ++=+..+.|.++|+.+++..    +.... ...+.+. ..+      ......+..++.+|   +|++|.-+.-..-++
T Consensus        81 YItD~~~~glIV~dl~~~~s~----Rv~~~-~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~l  155 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSW----RVLHN-SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKL  155 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEE----EEETC-GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEE
T ss_pred             EEeCCCcCcEEEEEccCCcEE----EEecC-CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcE
Confidence             33334568999999998765    44443 2222211 111      11123467777765   677777554333344


Q ss_pred             EeCCCC----Cc---------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          339 WDIRMD----ST---------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       339 wd~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      |.+.+.    ..         .+..+ +....          .+    ..++++++|...++--..+.|..|+..+
T Consensus       156 y~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~----------~s----~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  156 YRVPTSVLRDPSLSDAQALASQVQDL-GDKGS----------QS----DGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             EEEEHHHHCSTT--HHH-HHHT-EEE-EE-------------SE----CEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             EEEEHHHhhCccccccccccccceec-cccCC----------CC----ceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence            443320    00         01111 11000          01    2789999998888888999999999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.57  E-value=6.1  Score=42.27  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             CCCceeEEEeCCCCCEEEEecCCeEEEEEccC--C-----CceeEEee-------cC--CCCCC-CCCCcEEEEEEecCC
Q 011368          203 HDFNINSISNNSDCETFVSADDLRINLWNLEI--S-----DQCFNIVD-------MK--PSNMD-DLTEVITSAEFHPIY  265 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~--~-----~~~~~~~~-------~~--~~~~~-~~~~~v~~v~~~p~~  265 (487)
                      ....|+|+....+|+.+++|.||.|  |.+.-  .     .++-++--       +-  ...+. .+.++|..++....-
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDGNL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCCCE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            3667899998889999999966644  43321  1     11111100       00  01233 566789999999876


Q ss_pred             CCEEEEEeCCCeEEEEEccC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQ  285 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~  285 (487)
                       .++.+-++.|.|+.||+..
T Consensus       255 -~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 -NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -ceeeeeccCceEEEEEccC
Confidence             8999999999999999987

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.33  E-value=6.1  Score=32.52  Aligned_cols=31  Identities=13%  Similarity=0.088  Sum_probs=25.0

Q ss_pred             eeeEEEEcCCC------CEEEEEcCCCcEEEEEeCCC
Q 011368          372 DKFECSVSGDG------LHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       372 ~~~~~~~s~d~------~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .+..++|||-|      .+|++.+.+|.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            35799999943      47889999999999997643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=87.14  E-value=34  Score=34.10  Aligned_cols=63  Identities=11%  Similarity=0.130  Sum_probs=37.9

Q ss_pred             eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC---EEEEEcCCCcEEEEEeCCCCc
Q 011368          335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~---~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      +|.--|+++ ++....++...+-.   +++.   ......-+.+..+|+   .++.+..+|.+++.|..+|+.
T Consensus       272 s~vAld~~T-G~~~W~~Q~~~~D~---wD~d---~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       272 SIVARDPDT-GKIKWHYQTTPHDE---WDYD---GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             eEEEEcccc-CCEEEeeeCCCCCC---cccc---CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            566667776 77766666433211   1111   111001233334676   788999999999999999865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.07  E-value=28  Score=33.02  Aligned_cols=120  Identities=9%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ++|.++.|  ++|.+.+|.--.|++|.+++....+.+......                                     
T Consensus        67 G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~-------------------------------------  107 (657)
T KOG2377|consen   67 GEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE-------------------------------------  107 (657)
T ss_pred             CceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHH-------------------------------------
Confidence            88999999  688999999999999999998554432211000                                     


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                            .......|....|+.+ .-+|.-.+.-+-+|.+....+.++.       .+.|...|..-.|.++. ..++.++
T Consensus       108 ------ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnWy~yc~et-~v~LL~t  172 (657)
T KOG2377|consen  108 ------CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNWYMYCPET-AVILLST  172 (657)
T ss_pred             ------hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccEEEEcccc-ceEeeec
Confidence                  1233456888899855 4555555556777776644444432       46677788888898887 5444443


Q ss_pred             --CCCeEEEEEccCCc
Q 011368          274 --SRGFVRLVDMRQSA  287 (487)
Q Consensus       274 --~dg~i~iwd~~~~~  287 (487)
                        ..+.+.=+-++++.
T Consensus       173 ~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  173 TVLENVLNPFHFRAGT  188 (657)
T ss_pred             cccccccccEEEeece
Confidence              34455555555544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.78  E-value=13  Score=28.77  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCccc----cccceeecccccccCccccccccccceeEEEEcC-----CCCEEE
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALC----DHSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHLL  329 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~  329 (487)
                      -.|.... ..|++++..|+|.|++.......    ...++.+.-              ...|++++-.+     +...|+
T Consensus         4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~~~~~D~Ll   68 (136)
T PF14781_consen    4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKPDDGRDCLL   68 (136)
T ss_pred             EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCCCCCcCEEE
Confidence            3566666 67888889999999987754321    111223332              45677775433     356888


Q ss_pred             EEeCCeEEEEeCCC
Q 011368          330 SRDYMNLKLWDIRM  343 (487)
Q Consensus       330 s~~d~~i~iwd~~~  343 (487)
                      .|+...+..||+..
T Consensus        69 iGt~t~llaYDV~~   82 (136)
T PF14781_consen   69 IGTQTSLLAYDVEN   82 (136)
T ss_pred             EeccceEEEEEccc
Confidence            89889999999975

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.71  E-value=4.4  Score=23.65  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             CCCCEEEEEe--CCeEEEEeCCCCCceeeeeeccccc
Q 011368          323 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       323 ~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      |++++|+++.  +++|.++|..+ ...+..+.....+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P   36 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP   36 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence            5778777654  49999999976 7777777664443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=86.71  E-value=38  Score=34.17  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcEEEEEeCC------CcEEEEEccccceeE
Q 011368          116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKK  151 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~  151 (487)
                      -.+++.   -++...++|+.|      .++..||...++...
T Consensus       325 ~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  325 RVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             cccEEE---ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            344554   356788888888      356677777666443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.93  E-value=0.11  Score=48.53  Aligned_cols=131  Identities=15%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e-C
Q 011368          256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-Y  333 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-d  333 (487)
                      .-...|-|.+ .-++.++.+..+..||-......     ....              .+....++|..++..++.- . .
T Consensus        37 pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~l-----e~n~--------------tg~aldm~wDkegdvlavlAek~   96 (615)
T KOG2247|consen   37 PIIHRWRPEG-HNLAVACANTIVIYYDKAGQVIL-----ELNP--------------TGKALDMAWDKEGDVLAVLAEKT   96 (615)
T ss_pred             cceeeEecCC-CceehhhhhhHHHhhhhhcceec-----ccCC--------------chhHhhhhhccccchhhhhhhcC
Confidence            3456688888 66888888888999986653221     1111              2456778888888877653 3 3


Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      +.+.+||+.+.....-.+.+....                .-+.|++.+..++.|...|.+.|++..+... ......|.
T Consensus        97 ~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgtsR~-iiv~Gkh~  159 (615)
T KOG2247|consen   97 GPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRR-IIVMGKHQ  159 (615)
T ss_pred             CCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccchhh-hhhhcccc
Confidence            999999997632222222222211                1378999999999999999999999876522 23333366


Q ss_pred             CccccceEee
Q 011368          414 NENRKPILQA  423 (487)
Q Consensus       414 ~~v~~~~~~~  423 (487)
                      ..+.+.++.+
T Consensus       160 RRgtq~av~l  169 (615)
T KOG2247|consen  160 RRGTQIAVTL  169 (615)
T ss_pred             cceeEEEecc
Confidence            6666666655

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.78  E-value=49  Score=34.61  Aligned_cols=22  Identities=5%  Similarity=0.116  Sum_probs=19.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCCce
Q 011368          384 HFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       384 ~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                      .++.++.+|.+++.|.++|+.+
T Consensus       461 ~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       461 ALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             EEEEECCCCEEEEEECCCCCEE
Confidence            7899999999999999999654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.44  E-value=22  Score=30.40  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEc--cCCC--ceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNL--EISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  278 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~--~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  278 (487)
                      ..-+.++|+.+.+.+..-  .+-+|.-||.  .++.  +...+++++...-.++.. .-.++...+| ++.++.-..++|
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG-~L~Va~~ng~~V  235 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEG-NLYVATFNGGTV  235 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCC-cEEEEEecCcEE
Confidence            344678998888877765  6778877884  3222  111233322211111211 1334456678 888888888999


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                      ...|..+++.+    ..+..             ....|++++|-
T Consensus       236 ~~~dp~tGK~L----~eikl-------------Pt~qitsccFg  262 (310)
T KOG4499|consen  236 QKVDPTTGKIL----LEIKL-------------PTPQITSCCFG  262 (310)
T ss_pred             EEECCCCCcEE----EEEEc-------------CCCceEEEEec
Confidence            99999999866    44443             14579999996

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.26  E-value=5.4  Score=37.41  Aligned_cols=106  Identities=11%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             CCCEEEEe-cCCeEEEE-EccCCCc-eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc
Q 011368          215 DCETFVSA-DDLRINLW-NLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  291 (487)
Q Consensus       215 ~~~~l~s~-~d~~i~iw-d~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~  291 (487)
                      .|.-+... .||-|.-| |++..+. .+..+    +.++-....+..+.=..+. +-+++-+..|++.++...+.+.+  
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~----R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~l--  351 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI----RNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLL--  351 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceee----eccccCcccceeecccccc-ceEEEEcCCCceeeeecccCcce--
Confidence            45556666 78887766 5554332 11111    0111111222222211222 55677777777777755443321  


Q ss_pred             cceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 011368          292 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  343 (487)
Q Consensus       292 ~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~  343 (487)
                         .++.             --..+.-+++||++.++++-..|.++++.+++
T Consensus       352 ---L~~~-------------~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N  387 (733)
T COG4590         352 ---LFER-------------AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN  387 (733)
T ss_pred             ---ehhh-------------hhcCcceeeeCcccchheeecCCceEEEEecC
Confidence               1111             02356678999999999988779999999875

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=85.25  E-value=53  Score=34.50  Aligned_cols=82  Identities=6%  Similarity=-0.017  Sum_probs=47.7

Q ss_pred             ccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCC----CcceeeEEEEcCCCCEEEE
Q 011368          313 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND----SIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       313 ~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~d~~~l~s  387 (487)
                      ...|.++....-+.+++.. +||+|.++|-.+ .+.+...............+...+    ++.....++|||.+..++.
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~  337 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ  337 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence            3567777777767777766 689999999876 433333310001000000111101    1101235899999999999


Q ss_pred             EcCCCcEE
Q 011368          388 GSYSNLLR  395 (487)
Q Consensus       388 g~~dg~i~  395 (487)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            99999866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.57  E-value=3.7  Score=23.62  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=19.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cC--CcEEEE
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RG--GRVILF   59 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~d--g~i~iw   59 (487)
                      ...-.+.+|||||++|+-.+ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44577899999998887665 44  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.02  E-value=41  Score=32.20  Aligned_cols=59  Identities=12%  Similarity=0.231  Sum_probs=38.1

Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~  342 (487)
                      ..+|.+-+.||.+.+|+-+.-...    +.+..              .--...+.|.+..+.+++++ +..+.-|...
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~----~~lp~--------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFS----RFLPD--------------FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEE----EEcCC--------------CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            378899999999999987763311    22222              11123467777777777765 4788888753

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.50  E-value=4.3  Score=23.36  Aligned_cols=19  Identities=21%  Similarity=0.286  Sum_probs=14.5

Q ss_pred             CCeEEEEEcCCCCEEEEec
Q 011368          460 SKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       460 ~~v~~~~~spd~~~la~~s  478 (487)
                      ..-...+|||||+.|+.++
T Consensus         9 ~~~~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEE
T ss_pred             ccccCEEEecCCCEEEEEe
Confidence            3556889999999999776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.46  E-value=14  Score=35.06  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             CcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecc
Q 011368          254 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  298 (487)
Q Consensus       254 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  298 (487)
                      ..+.++..+|.+ .+.|+...=|.|.++|+.++..+    +.|++
T Consensus       308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv----rmWKG  347 (415)
T PF14655_consen  308 REGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV----RMWKG  347 (415)
T ss_pred             ceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh----hhhcc
Confidence            457889999998 88888777799999999998765    66766

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=82.29  E-value=30  Score=29.35  Aligned_cols=128  Identities=15%  Similarity=0.189  Sum_probs=69.3

Q ss_pred             eEEEEcCCCCEEEEEeCCeEEEEeCCC-CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC---C
Q 011368          317 SDIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---N  392 (487)
Q Consensus       317 ~~v~~s~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d---g  392 (487)
                      ..++-++.+.++++.+.+.|.+|++.. ...++..+..-..                |..+.++..|.||+|-=.+   .
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~----------------V~~l~y~~~GDYlvTlE~k~~~~   84 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR----------------VLQLVYSEAGDYLVTLEEKNKRS   84 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh----------------eeEEEeccccceEEEEEeecCCc
Confidence            344444433344444558999999973 2455666654432                2589999999999976432   2


Q ss_pred             ---cEEEE---EeCC-C-CceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCC-CccccccccCCCeE
Q 011368          393 ---LLRIF---SHGV-G-SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS-GHHELSYNLSSKLL  463 (487)
Q Consensus       393 ---~i~iw---d~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~-~~~~~~~~~~~~v~  463 (487)
                         .+|+|   +... . ......+-+|.-                      .+...    .... ++...-.....+..
T Consensus        85 ~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v----------------------~~~~~----~~~~~qleiiElPl~~~p~  138 (215)
T PF14761_consen   85 PVDFVRAYFNWRSQKEENSPVRVRIAGHRV----------------------TPSFN----ESSKDQLEIIELPLSEPPL  138 (215)
T ss_pred             cceEEEEEEEhhhhcccCCcEEEEEccccc----------------------ccCCC----CccccceEEEEecCCCCCC
Confidence               45553   2221 1 111111112210                      00000    0000 01111223456778


Q ss_pred             EEEEcCCCCEEEEecCCeEEEEe
Q 011368          464 HLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       464 ~~~~spd~~~la~~s~~~~~i~~  486 (487)
                      .++-.|-.--|++|+++.+.+|.
T Consensus       139 ciaCC~~tG~LlVg~~~~l~lf~  161 (215)
T PF14761_consen  139 CIACCPVTGNLLVGCGNKLVLFT  161 (215)
T ss_pred             EEEecCCCCCEEEEcCCEEEEEE
Confidence            99999988888899999999986

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.30  E-value=32  Score=28.99  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=48.1

Q ss_pred             CCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeee---
Q 011368          125 PNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVY---  199 (487)
Q Consensus       125 ~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  199 (487)
                      .+|.++.+.+  ....|++||+.+++........ .            ..++.-+...-........|........-   
T Consensus        54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~------------~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t  120 (262)
T COG3823          54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-P------------DTVFGEGITKLGDYFYQLTWKEGVAFKYDADT  120 (262)
T ss_pred             eCCEEEEeccccccceeEEEeccCceEEEEeecC-C------------ccccccceeeccceEEEEEeccceeEEEChHH
Confidence            3566677765  3457999999998877654433 1            23333344444445555556543332210   


Q ss_pred             ---cccC--CCceeEEEeCCCCCEEEEe-cCCeEEEEEcc
Q 011368          200 ---PHAH--DFNINSISNNSDCETFVSA-DDLRINLWNLE  233 (487)
Q Consensus       200 ---~~~~--~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~  233 (487)
                         +..+  .+.=+.+  ..|+..|+.+ ...+++.-|.+
T Consensus       121 ~~~lg~~~y~GeGWgL--t~d~~~LimsdGsatL~frdP~  158 (262)
T COG3823         121 LEELGRFSYEGEGWGL--TSDDKNLIMSDGSATLQFRDPK  158 (262)
T ss_pred             hhhhcccccCCcceee--ecCCcceEeeCCceEEEecCHH
Confidence               0111  1222233  3345556665 55666666655

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.66  E-value=73  Score=32.77  Aligned_cols=71  Identities=13%  Similarity=-0.012  Sum_probs=42.4

Q ss_pred             EEEEEecCCCCEEEEEeCCC-----eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          257 TSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      ..++|-|+| ..+++-..||     .|+.+....-+-     -.|..          -.+....+..++|+-....++.+
T Consensus       250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrH-----Gef~l----------r~~~dEk~~~~~wn~~s~vlav~  313 (1243)
T COG5290         250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRH-----GEFDL----------RVGCDEKAFLENWNLLSTVLAVA  313 (1243)
T ss_pred             hccccccCC-ceeeeeccCCCCCcceEEEEccCCccc-----CCccc----------cCCchhhhhhhhhhHHHHHHHHh
Confidence            458899999 8999877554     355554322110     00000          01113456677887766667666


Q ss_pred             eCCeEEEEeCCC
Q 011368          332 DYMNLKLWDIRM  343 (487)
Q Consensus       332 ~d~~i~iwd~~~  343 (487)
                      ..+.+++|-...
T Consensus       314 ~~n~~~lwttkN  325 (1243)
T COG5290         314 EGNLLKLWTTKN  325 (1243)
T ss_pred             hcceEEEEEccc
Confidence            668999998754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=80.65  E-value=40  Score=29.75  Aligned_cols=198  Identities=6%  Similarity=0.005  Sum_probs=99.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      .-...+.|.  .+|.++-+.+.-|  .|+.+|+.+++.......+.                                  
T Consensus        45 aFTQGL~~~--~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~----------------------------------   88 (264)
T PF05096_consen   45 AFTQGLEFL--DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP----------------------------------   88 (264)
T ss_dssp             -EEEEEEEE--ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----------------------------------
T ss_pred             ccCccEEec--CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----------------------------------
Confidence            345667773  4677777777555  78899999988665432211                                  


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                                  ..--..++.. +++...-. .++...+||.++- +....+     .+.   ..=+.++  .++ ..|+
T Consensus        89 ------------~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-~~~~~~-----~y~---~EGWGLt--~dg-~~Li  143 (264)
T PF05096_consen   89 ------------RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-KKIGTF-----PYP---GEGWGLT--SDG-KRLI  143 (264)
T ss_dssp             ------------T--EEEEEEE-TTEEEEEESSSSEEEEEETTTT-EEEEEE-----E-S---SS--EEE--ECS-SCEE
T ss_pred             ------------cccceeEEEE-CCEEEEEEecCCeEEEEccccc-eEEEEE-----ecC---CcceEEE--cCC-CEEE
Confidence                        1111223332 33455556 8899999999853 333332     122   2335566  456 5677


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~  349 (487)
                      .+.....|..+|..+-+..    +.+... ...       ..-..++.+.|- +|...|-. ....|...|..+ +..+.
T Consensus       144 ~SDGS~~L~~~dP~~f~~~----~~i~V~-~~g-------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~  209 (264)
T PF05096_consen  144 MSDGSSRLYFLDPETFKEV----RTIQVT-DNG-------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVG  209 (264)
T ss_dssp             EE-SSSEEEEE-TTT-SEE----EEEE-E-ETT-------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEE
T ss_pred             EECCccceEEECCcccceE----EEEEEE-ECC-------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEE
Confidence            7666778999998876543    222220 000       002346666765 45444333 236777788876 77666


Q ss_pred             eeeccccccccc---ccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368          350 TFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGS  389 (487)
Q Consensus       350 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~d~~~l~sg~  389 (487)
                      .+....-.....   ......+..   +.+++.|....|...+
T Consensus       210 ~iDls~L~~~~~~~~~~~~~~dVL---NGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  210 WIDLSGLRPEVGRDKSRQPDDDVL---NGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEE-HHHHHHHTSTTST--TTS-E---EEEEEETTTTEEEEEE
T ss_pred             EEEhhHhhhcccccccccccCCee---EeEeEeCCCCEEEEEe
Confidence            554322110000   000111222   5999998665544433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.47  E-value=0.31  Score=45.64  Aligned_cols=131  Identities=9%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      .+++.-++.++.+..+..||-.......                                                 ..-
T Consensus        43 ~~e~~nlavaca~tiv~~YD~agq~~le-------------------------------------------------~n~   73 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAGQVILE-------------------------------------------------LNP   73 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhcceecc-------------------------------------------------cCC
Confidence            4666678888889999999876554332                                                 223


Q ss_pred             CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368          204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRL  280 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  280 (487)
                      ++....++|..++..++. + ..+.+.+||+.+... .++      .+.+ +....  +.|++.+ ..++.+...|.+.|
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL------E~gg~~s~sl--l~wsKg~-~el~ig~~~gn~vi  143 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL------ESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVI  143 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH------hccCcchHHH--HhhccCC-ccccccccccceEE
Confidence            455677888888877766 4 889999999984322 110      1111 22222  6788887 88888888999999


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      ++..+.+..    -...             .|...+.++++.+.+..+..
T Consensus       144 ynhgtsR~i----iv~G-------------kh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  144 YNHGTSRRI----IVMG-------------KHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             Eeccchhhh----hhhc-------------ccccceeEEEecccceeeec
Confidence            998876532    1111             24678899999887755443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	487
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-103

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/482 (42%), Positives = 296/482 (61%), Gaps = 59/482 (12%)
Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKV--RDQKVK--KIKEMD-HFPFVSSENTL----LAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++ +   +KE D  +   ++  TL        + M E +P   
Sbjct: 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP--- 168
Query: 183 AHGYHLEWTENMATKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIV 242
                         +++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIV
Sbjct: 169 -------------RRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV 215
Query: 243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 302
           D+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E 
Sbjct: 216 DIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PED 274
Query: 303 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 362
             ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC
Sbjct: 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLC 334
Query: 363 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 422
            LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP   
Sbjct: 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRTV 391
Query: 423 AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 482
             PR   +S         R+  E S       S + + K+LH AWHP  N+IA A  N+L
Sbjct: 392 LKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNNL 439
Query: 483 FF 484
           + 
Sbjct: 440 YI 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	487
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.23
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.93
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.89
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.87
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.85
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.77
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.76
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.73
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.64
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.64
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.63
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.61
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.55
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.45
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.42
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.39
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.3
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.26
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.19
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.14
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.12
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.96
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.95
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.91
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.87
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.82
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.76
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.57
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.53
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.45
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.3
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.01
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.77
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.65
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.54
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.16
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.97
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.26
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.57
3ott_A	758	Two-component system sensor histidine kinase; beta	94.31
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.06
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.45
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.38
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.33
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.96
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.68
3ott_A	758	Two-component system sensor histidine kinase; beta	89.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	85.12
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.3
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.64
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.15
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.07
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.17

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.3e-49  Score=381.12  Aligned_cols=432  Identities=45%  Similarity=0.808  Sum_probs=321.7

Q ss_pred             cchhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCC
Q 011368           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (487)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (487)
                      .+..|++.|.|++.  .+.+.|.+.|++++|+|+|++||+|+.||.|+||++.+++..                ......
T Consensus         8 ~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~----------------~~~~~~   69 (447)
T 3dw8_B            8 NDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI----------------QSHSRG   69 (447)
T ss_dssp             CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCCCC
T ss_pred             cceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC----------------Cccccc
Confidence            45789999999963  566889999999999999999999999999999999877531                111233


Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCC--cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (487)
                      +++....+.+|.++|+++.++.+++.|.+++|+  |++  .+|++++.|++|++||+..+....... ..         .
T Consensus        70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~---------~  137 (447)
T 3dw8_B           70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--PQKNAAQFLLSTNDKTIKLWKISERDKRPEGY-NL---------K  137 (447)
T ss_dssp             CEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--CCCSSSEEEEEECSSCEEEEEEEEEEEEEECC-SC---------C
T ss_pred             ceeEecccccccccccccccccccCceEEEEEc--CCCCcceEEEeCCCCeEEEEecccccCCccee-cc---------c
Confidence            566788999999999999999999999999995  555  799999999999999998765432110 00         0


Q ss_pred             ccccccccccCCCCc---ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeec
Q 011368          168 LAEKNFMNEHNPPSF---AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM  244 (487)
Q Consensus       168 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~  244 (487)
                      ...+...........   ............+.+.+..+|...|.+++|+|++++|++|.|+.|++||++.......++..
T Consensus       138 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~  217 (447)
T 3dw8_B          138 EEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDI  217 (447)
T ss_dssp             --------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEEC
T ss_pred             CccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeec
Confidence            000000000000000   00000011122334455578999999999999999999999999999999966677777666


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                      ++..+.+|...|.+++|+|+++.+|++++.||.|++||+++++........+..| ..+.....+.+|...|.+++|+|+
T Consensus       218 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~  296 (447)
T 3dw8_B          218 KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSISDVKFSHS  296 (447)
T ss_dssp             CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECTT
T ss_pred             ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC-CCccccccccccCceEEEEEECCC
Confidence            6667889999999999999976899999999999999999987644445777774 223334445667779999999999


Q ss_pred             CCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          325 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       325 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      |++|++++++.|++||++..+.++..+..|......++..+..+++++++.++|+|++++|++|+.||.|++||+.+++.
T Consensus       297 g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          297 GRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             SSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             CCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            99999987799999999866788899999987766666666677777667899999999999999999999999998743


Q ss_pred             eeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEE
Q 011368          405 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  484 (487)
Q Consensus       405 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i  484 (487)
                        ..+.++..+.......+.  ..      +..++....     ........++...|.+++|||++++||+++.+++|+
T Consensus       377 --~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~  441 (447)
T 3dw8_B          377 --ITLEASRENNKPRTVLKP--RK------VCASGKRKK-----DEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYI  441 (447)
T ss_dssp             --EEEECCSTTCCTTCBCCC--CC------EECSSCCCT-----TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEE
T ss_pred             --eeeeecccccccccccCC--cc------ccccCCccc-----ccccccccccCCceeEEEECCCCCEEEEEecceeee
Confidence              477778776654444432  11      233322211     112223456788999999999999999999999999


Q ss_pred             EeC
Q 011368          485 HYA  487 (487)
Q Consensus       485 ~~~  487 (487)
                      |++
T Consensus       442 ~~~  444 (447)
T 3dw8_B          442 FQD  444 (447)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-45  Score=367.89  Aligned_cols=401  Identities=13%  Similarity=0.121  Sum_probs=288.8

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.                         .....+.+|.      
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------------------------~~~~~~~~~~------  103 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------------------------ILKTTIPVFS------  103 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-------------------------CEEEEEECSS------
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-------------------------eeeEeecccC------
Confidence            447999999999999999999999999999999875532                         1345678888      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCC----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                            ++|.+++|  +|++++|++++.+    +.|++||.  ++..... ......+.++.|.+.....++++..+...
T Consensus       104 ------~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v  172 (611)
T 1nr0_A          104 ------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTV  172 (611)
T ss_dssp             ------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             ------CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeC--CCCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence                  89999999  6899999998865    46888874  3322221 23445678888877655555555555443


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                      .+...  ...+.... +.+|...|++++|+|++++|++| .|++|++||+.++ .....+........+|...|.+++|+
T Consensus       173 ~lwd~--~~~~~~~~-l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~s  248 (611)
T 1nr0_A          173 AIFEG--PPFKFKST-FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWS  248 (611)
T ss_dssp             EEEET--TTBEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             EEEEC--CCCeEeee-eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEEC
Confidence            33221  12233344 48999999999999999999999 9999999999844 44433211111223799999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc------------------------------ccCcccccccc
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE------------------------------SHGSKSFFTEI  312 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~------------------------------~~~~~~~~~~~  312 (487)
                      |++ ++|++++.|+.|++||+++++..    ..+..+..                              .......+.+|
T Consensus       249 pdg-~~l~s~s~D~~v~lWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh  323 (611)
T 1nr0_A          249 PDG-TKIASASADKTIKIWNVATLKVE----KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH  323 (611)
T ss_dssp             TTS-SEEEEEETTSEEEEEETTTTEEE----EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             CCC-CEEEEEeCCCeEEEEeCCCCcee----eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence            999 99999999999999999987643    22221000                              00011235689


Q ss_pred             ccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee-ecccccccc-------------------ccccc------
Q 011368          313 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPK-------------------LCDLY------  365 (487)
Q Consensus       313 ~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~-------------------~~~~~------  365 (487)
                      ...|.+++|+|+|++|++++ |+.|++||+.+ +.....+ ..|...+..                   +++..      
T Consensus       324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~  402 (611)
T 1nr0_A          324 NKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS  402 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccc
Confidence            99999999999999999986 59999999986 4433322 112111000                   00000      


Q ss_pred             -----------------CCC------------------------CcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          366 -----------------NND------------------------SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       366 -----------------~~~------------------------~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                                       ..+                        ....+.+++|+|||++|++|+.|+.|++||+.++..
T Consensus       403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~  482 (611)
T 1nr0_A          403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV  482 (611)
T ss_dssp             TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred             cceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce
Confidence                             000                        011246899999999999999999999999987643


Q ss_pred             eeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC---Ccccc-cc-ccCCCeEEEEEcCCCCEEEEec
Q 011368          405 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHEL-SY-NLSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       405 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~---~~~~~-~~-~~~~~v~~~~~spd~~~la~~s  478 (487)
                      ......+|...|.+++|+|  ++++     |++++.|+. ++|+..   +.... .. .|...|.+++|+|||++||+|+
T Consensus       483 ~~~~~~~h~~~v~~v~fsp--dg~~-----las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs  555 (611)
T 1nr0_A          483 SEVKTIVHPAEITSVAFSN--NGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS  555 (611)
T ss_dssp             EEEEEEECSSCEEEEEECT--TSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeccCCCCceEEEEECC--CCCE-----EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE
Confidence            3223378999999999998  7788     999999999 999543   22222 23 3999999999999999999999


Q ss_pred             CCe-EEEEeC
Q 011368          479 GNS-LFFHYA  487 (487)
Q Consensus       479 ~~~-~~i~~~  487 (487)
                      .|+ ++||+.
T Consensus       556 ~D~~v~lW~~  565 (611)
T 1nr0_A          556 LDNSVIVWNM  565 (611)
T ss_dssp             TTSCEEEEET
T ss_pred             CCCcEEEEEC
Confidence            665 999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-44  Score=359.75  Aligned_cols=382  Identities=11%  Similarity=0.118  Sum_probs=281.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      +.+.+.+++|+|+|++||+++ ++.|+||++.+++.                           ...+.+|.         
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~---------------------------~~~~~~h~---------   59 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------------TEIYTEHS---------   59 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------------CEEECCCS---------
T ss_pred             ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc---------------------------CeEecCCC---------
Confidence            467788999999999999987 57999999876654                           37789999         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         ..|++++|  +|+|++|++|+.|++|+|||+.+++.... ........+.++.|.+. +..+++.............
T Consensus        60 ---~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           60 ---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEE
T ss_pred             ---CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC-CCEEEEEECCCCceeEEEE
Confidence               88999999  68999999999999999999975543222 22234556888888765 4444444443333445566


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                      |+.......+ .+|...|++++|+|++. .|++| .|++|++||.. ..++..       .+.+|...|.+++|+|++ +
T Consensus       134 wd~~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~-------~l~~H~~~V~~v~fspdg-~  203 (611)
T 1nr0_A          134 FDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKS-------TFGEHTKFVHSVRYNPDG-S  203 (611)
T ss_dssp             TTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEE-------EECCCSSCEEEEEECTTS-S
T ss_pred             eeCCCCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEee-------eeccccCceEEEEECCCC-C
Confidence            7776666554 89999999999999987 58888 99999999987 344433       357899999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +|++++.|+.|++||+.+++..    ..+..      ......+|...|.+++|+|+|++|++++ |++|++||+.+ ++
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~----~~~~~------~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~  272 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LK  272 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TE
T ss_pred             EEEEEECCCcEEEEECCCCcEe----eeecc------ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-Cc
Confidence            9999999999999999887643    33321      0001125789999999999999999986 69999999986 66


Q ss_pred             eeeeeeccccccc---------------------ccc---------cc-cCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368          347 PVATFKIHEHLRP---------------------KLC---------DL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLR  395 (487)
Q Consensus       347 ~~~~~~~~~~~~~---------------------~~~---------~~-~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~  395 (487)
                      .+..+..+.....                     .++         .+ .+..   .|++++|+|||++|++++.|+.|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~---~v~~l~~spdg~~l~s~s~D~~v~  349 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK---AITALSSSADGKTLFSADAEGHIN  349 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC---CEEEEEEeCCCCEEEEEeCCCcEE
Confidence            6655543211000                     000         00 1122   246999999999999999999999


Q ss_pred             EEEeCCCCceeEEEeccC--------------------------------------------------------------
Q 011368          396 IFSHGVGSAGGITVEAGK--------------------------------------------------------------  413 (487)
Q Consensus       396 iwd~~~~~~~~~~~~~~~--------------------------------------------------------------  413 (487)
                      +||+.++........+|.                                                              
T Consensus       350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~  429 (611)
T 1nr0_A          350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA  429 (611)
T ss_dssp             EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred             EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence            999987632111001121                                                              


Q ss_pred             -------------------CccccceEeeCCccccccccceeeecccce-ecCCCCCcc---ccccccCCCeEEEEEcCC
Q 011368          414 -------------------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH---ELSYNLSSKLLHLAWHPT  470 (487)
Q Consensus       414 -------------------~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~---~~~~~~~~~v~~~~~spd  470 (487)
                                         ..+.+++++|  ++++     +++|+.|+. ++|+.....   ....+|...|++++|+||
T Consensus       430 ~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg~~-----lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd  502 (611)
T 1nr0_A          430 CYKHIAIYSHGKLTEVPISYNSSCVALSN--DKQF-----VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN  502 (611)
T ss_dssp             ESSEEEEEETTEEEEEECSSCEEEEEECT--TSCE-----EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred             eCceEEEEeCCceeeeecCCCceEEEEeC--CCCE-----EEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCC
Confidence                               2234455555  5666     999999999 999543221   122578999999999999


Q ss_pred             CCEEEEecCC-eEEEEe
Q 011368          471 TNLIACANGN-SLFFHY  486 (487)
Q Consensus       471 ~~~la~~s~~-~~~i~~  486 (487)
                      |++||+++.| .+++|+
T Consensus       503 g~~las~s~d~~v~~w~  519 (611)
T 1nr0_A          503 GAFLVATDQSRKVIPYS  519 (611)
T ss_dssp             SSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEcCCCCEEEEE
Confidence            9999999955 488886

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-43  Score=326.39  Aligned_cols=284  Identities=15%  Similarity=0.247  Sum_probs=237.8

Q ss_pred             cccccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368           28 ELQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (487)
                      ...|.+.|++++|+|+    +++|++|+.|++|+||++.+++.                         .....+.+|.  
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~--   80 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ--   80 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS--
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC--
Confidence            3469999999999985    57999999999999999986632                         2345789999  


Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                                ..|.+++|  ++++.++++++.|++|++||+.+++....                               
T Consensus        81 ----------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~-------------------------------  117 (321)
T 3ow8_A           81 ----------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKS-------------------------------  117 (321)
T ss_dssp             ----------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------
T ss_pred             ----------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEE-------------------------------
Confidence                      89999999  57889999999999999999998875543                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                      +..|...+.+++|+|++++|+++ .|+.|++|+++.+.....        +..|...|.+++|+
T Consensus       118 ----------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--------~~~~~~~v~~~~~s  173 (321)
T 3ow8_A          118 ----------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--------LDTRGKFILSIAYS  173 (321)
T ss_dssp             ----------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--------EECSSSCEEEEEEC
T ss_pred             ----------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--------ecCCCceEEEEEEC
Confidence                            25677889999999999999999 999999999996554332        35677889999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~  341 (487)
                      |++ ++|++++.||.|++||+++++..    ..+.+             |...|.+++|+|++++|++++ |+.|++||+
T Consensus       174 pdg-~~lasg~~dg~i~iwd~~~~~~~----~~~~~-------------h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          174 PDG-KYLASGAIDGIINIFDIATGKLL----HTLEG-------------HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred             CCC-CEEEEEcCCCeEEEEECCCCcEE----EEEcc-------------cCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence            999 99999999999999999988654    55555             478899999999999999986 599999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  421 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  421 (487)
                      +. ...+..+.+|...+               ++++|+|++++|++|+.|++|++||+.+++ ....+.           
T Consensus       236 ~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~-----------  287 (321)
T 3ow8_A          236 QH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVHTFF-----------  287 (321)
T ss_dssp             TT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEEC-----------
T ss_pred             CC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEEEEc-----------
Confidence            87 78888888888754               699999999999999999999999998762 233332           


Q ss_pred             eeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          422 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       422 ~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                         +|...|.+++|+|++++|++++.|+ +.||.
T Consensus       288 -----------------------------------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          288 -----------------------------------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             -----------------------------------CCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             -----------------------------------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence                                               3445788999999999999888665 88886

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-43  Score=323.58  Aligned_cols=284  Identities=19%  Similarity=0.212  Sum_probs=235.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|++++|++|+.||+|+|||+.+++.                           +..+.+|.       
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------------~~~~~~~~-------   55 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------------VRSIQVTE-------   55 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------------eEEeeccC-------
Confidence            35889999999999999999999999999999887653                           57788888       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           .+|.+++|+  +++++|++|+.|++|++||+.+++....                                    
T Consensus        56 -----~~v~~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~------------------------------------   92 (304)
T 2ynn_A           56 -----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVD------------------------------------   92 (304)
T ss_dssp             -----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred             -----CcEEEEEEe--CCCCEEEEECCCCEEEEEECCCCcEEEE------------------------------------
Confidence                 889999995  6889999999999999999998875543                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +.+|...|++++|+|++++|++| .|++|++||++.+.....       .+.+|...|.+++|+|.++.
T Consensus        93 -----------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-------~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           93 -----------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-------TFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             -----------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-------EECCCCSCEEEEEECTTCTT
T ss_pred             -----------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-------hhcccCCcEEEEEECCCCCC
Confidence                       37899999999999999999999 999999999986544433       35789999999999995338


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC--CCCEEEEEe-CCeEEEEeCCCC
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                      +|++++.|+.|++||++++...    ..+..            +|...+..+.|+|  ++.+|++++ |+.|++||+++ 
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-  217 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-  217 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-
T ss_pred             EEEEEeCCCeEEEEECCCCCcc----ceecc------------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-
Confidence            9999999999999999876533    22222            2356789999986  778999986 59999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      ++++..+.+|...+               ..++|+|++++|++|+.||.|++||+.+++ ....+..|            
T Consensus       218 ~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~------------  269 (304)
T 2ynn_A          218 KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVG------------  269 (304)
T ss_dssp             TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCS------------
T ss_pred             CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeeccCC------------
Confidence            88999999998754               689999999999999999999999998873 23333333            


Q ss_pred             CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCC--EEEEecCCeEEEEe
Q 011368          425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN--LIACANGNSLFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~--~la~~s~~~~~i~~  486 (487)
                                                        ...+.+++|+|++.  ++|+|++|++.+|+
T Consensus       270 ----------------------------------~~~~~~~~~~~~~~~~~~asg~~~g~~~~~  299 (304)
T 2ynn_A          270 ----------------------------------LERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (304)
T ss_dssp             ----------------------------------SSSEEEEEECTTCGGGCEEEEETTEEEEEE
T ss_pred             ----------------------------------CccEEEEEECCCCCceEEEEecCCceEEEE
Confidence                                              23667788888774  57888888887775

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-43  Score=338.22  Aligned_cols=282  Identities=18%  Similarity=0.261  Sum_probs=240.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.++|++++|+|++++|++|+.||+|+|||+.+++.                           ...+.+|.      
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------------~~~l~~h~------  150 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHT------  150 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCS------
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEeccC------
Confidence            456999999999999999999999999999999988765                           37789999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            +.|.+++|  ++++++|++|+.|++|++||+.+++....                                   
T Consensus       151 ------~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~-----------------------------------  187 (410)
T 1vyh_C          151 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT-----------------------------------  187 (410)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC-----------------------------------
T ss_pred             ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEE-----------------------------------
Confidence                  89999999  57899999999999999999988765433                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +.+|...|.+++|+|++++|++| .|++|++||++++ .++..       +.+|...|.++.|+|++ 
T Consensus       188 ------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~-------~~~h~~~v~~~~~~~~g-  246 (410)
T 1vyh_C          188 ------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKT-------FTGHREWVRMVRPNQDG-  246 (410)
T ss_dssp             ------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEE-------EECCSSCEEEEEECTTS-
T ss_pred             ------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEE-------EeCCCccEEEEEECCCC-
Confidence                        37899999999999999999999 9999999999954 44433       46899999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--------------------CC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------------------GQ  326 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--------------------~~  326 (487)
                      .+|++++.|+.|++||+++++..    ..+..             |...|.+++|+|+                    |.
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  309 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECK----AELRE-------------HRHVVECISWAPESSYSSISEATGSETKKSGKPGP  309 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred             CEEEEEcCCCeEEEEECCCCcee----eEecC-------------CCceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence            99999999999999999987643    44444             4788999999996                    67


Q ss_pred             EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          327 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       327 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                      +|++|+ |+.|++||+++ +.++..+.+|...+               ++++|+|+|++|++|+.||.|++||+.+++ .
T Consensus       310 ~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~  372 (410)
T 1vyh_C          310 FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTLRVWDYKNKR-C  372 (410)
T ss_dssp             EEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEEEEECCTTSC-C
T ss_pred             EEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCc-e
Confidence            899886 59999999997 88899999888754               699999999999999999999999998763 2


Q ss_pred             eEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEE
Q 011368          406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFF  484 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i  484 (487)
                      ...+.                                              .|...|++++|+|++++||+|+.|+ +.+
T Consensus       373 ~~~~~----------------------------------------------~h~~~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          373 MKTLN----------------------------------------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             CEEEE----------------------------------------------CCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             EEEEc----------------------------------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            33333                                              3444778888888888888888554 788


Q ss_pred             Ee
Q 011368          485 HY  486 (487)
Q Consensus       485 ~~  486 (487)
                      |.
T Consensus       407 W~  408 (410)
T 1vyh_C          407 WE  408 (410)
T ss_dssp             EC
T ss_pred             Ee
Confidence            85

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.8e-42  Score=342.27  Aligned_cols=355  Identities=19%  Similarity=0.255  Sum_probs=287.0

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|.+++|+|++++|++++.|+.|++|+....                            .+..+.+|.       
T Consensus       218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~~~-------  262 (577)
T 2ymu_A          218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------  262 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----------------------------EEEEECCCS-------
T ss_pred             ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------------------EEEEEecCC-------
Confidence            458889999999999999999999999999995322                            357788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++..|++++.|+.|++|+.........  ......+.++.+.+ ++..++.+..+..    ..
T Consensus       263 -----~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~t~~~d~~----i~  328 (577)
T 2ymu_A          263 -----SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSP-DGQTIASASDDKT----VK  328 (577)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECT-TSSEEEEEETTSC----EE
T ss_pred             -----CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcEEEEE--ecCCCCeEEEEECC-CCCEEEEEeCCCe----EE
Confidence                 88999999  68899999999999999999765433322  23345566777654 4444444443332    23


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                      .|+........+.+|...|.+++|+|++++|+++ .|+.|++||.. + ..+.       .+.+|...|.+++|+|++ +
T Consensus       329 ~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~-------~~~~~~~~v~~~~~s~dg-~  398 (577)
T 2ymu_A          329 LWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQ-------TLTGHSSSVRGVAFSPDG-Q  398 (577)
T ss_dssp             EEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEE-------EEECCSSCEEEEEECTTS-S
T ss_pred             EEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEE-------EecCCCCCeEEEEECCCC-C
Confidence            3554333333347899999999999999999999 99999999965 3 3333       246789999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +|++++.|+.|++||... +..    ..+..             |...|.+++|+|++++|++++ |+.|++||..  ++
T Consensus       399 ~l~~~~~d~~v~~~~~~~-~~~----~~~~~-------------~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~  458 (577)
T 2ymu_A          399 TIASASDDKTVKLWNRNG-QLL----QTLTG-------------HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQ  458 (577)
T ss_dssp             CEEEEETTSEEEEECTTC-CEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SC
T ss_pred             EEEEEeCCCEEEEEeCCC-CEE----EEecC-------------CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CC
Confidence            999999999999999643 322    44444             578999999999999999986 5999999974  67


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+..+.+|...+               ++++|+||+++|++++.|+.|++||.. + .....+.+|...|++++|+|  +
T Consensus       459 ~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~--d  519 (577)
T 2ymu_A          459 LLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSP--D  519 (577)
T ss_dssp             EEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECT--T
T ss_pred             EEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEEEEEEcC--C
Confidence            788888887754               699999999999999999999999964 4 56788999999999999998  7


Q ss_pred             cccccccceeeecccce-ecCCC-CCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          427 ARRSSLSNLTRGLYRQA-HENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-~~w~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      +++     |++++.|+. ++|+. ++.+..+.+|...|++++|+||+++|++++.|+ +++|+
T Consensus       520 g~~-----l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          520 GQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSC-----EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCE-----EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            777     999999999 99954 455666779999999999999999999998665 99995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.1e-43  Score=324.51  Aligned_cols=261  Identities=13%  Similarity=0.131  Sum_probs=197.4

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|.+++|+|||++|++++ |+++++||.......       ...         ..+..........|       
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~-------~~~---------~~~~~~~~~~~~~~-------   81 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK-------DPC---------AAPNEGFCSAGVQT-------   81 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES-------SGG---------GTTCGGGCSEEEEE-------
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec-------ccc---------ccCCcceeeeeecc-------
Confidence            445778899999999999999887 778899874321100       000         00000001111122       


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                           +..|.+++|+  ++ ..|++|+.||+|+|||+.+++......                                 
T Consensus        82 -----~~~v~~~~~s--~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~---------------------------------  120 (344)
T 4gqb_B           82 -----EAGVADLTWV--GE-RGILVASDSGAVELWELDENETLIVSK---------------------------------  120 (344)
T ss_dssp             -----SSCEEEEEEE--TT-TEEEEEETTSEEEEEEECTTSSCEEEE---------------------------------
T ss_pred             -----CCCEEEEEEe--CC-CeEEEEECCCEEEEEeccCCCceeEee---------------------------------
Confidence                 3789999995  55 478899999999999999876543211                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ....+|...|++++|+|++++|++| .|++|++||+++ +.++.       .+.+|...|.+++|+|++.
T Consensus       121 ----------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~-------~~~~h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          121 ----------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLS-------SYRAHAAQVTCVAASPHKD  182 (344)
T ss_dssp             ----------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE-------EECCCSSCEEEEEECSSCT
T ss_pred             ----------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE-------EEcCcCCceEEEEecCCCC
Confidence                      1136899999999999999999999 999999999994 44443       3578999999999999985


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-CCeEEEEeCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d~~i~iwd~~~~  344 (487)
                      .+|++++.|+.|++||+++++..    ..+..           ..|...+.+++|+|+ +++|++|+ |+.|++||+++ 
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-  246 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-  246 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             Cceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-
Confidence            68999999999999999988654    33332           123457899999985 56778876 59999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++++..+.+|...+               ++++|+|++ ++|++|+.|++|+|||+.++
T Consensus       247 ~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          247 TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             --CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            88899999998755               699999998 57999999999999999876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.6e-42  Score=341.90  Aligned_cols=360  Identities=18%  Similarity=0.252  Sum_probs=283.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|++.|+|++|||||++||+|+.|++|+|||. +++                           .+.++.+|.      
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~---------------------------~~~~l~gh~------   57 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ---------------------------LLQTLTGHS------   57 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC---------------------------EEEEEECCS------
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC---------------------------EEEEEeCCC------
Confidence            4469999999999999999999999999999995 332                           357899999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++++|++++.|++|++||+.......+.  .....+.++.|.+. +..++.+..+.......
T Consensus        58 ------~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~~~~~~~--~~~~~v~~~~~s~d-~~~l~~~~~d~~~~~~~  126 (577)
T 2ymu_A           58 ------SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPD-GQTIASASDDKTVKLWN  126 (577)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCEEEEEE--CCCCCEEEEEECCC-CCEEEEEcCCCceeecc
Confidence                  89999999  689999999999999999997544333222  23455677777654 44444433322211111


Q ss_pred             e-------------------------------------eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEE
Q 011368          188 L-------------------------------------EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  229 (487)
Q Consensus       188 ~-------------------------------------~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~i  229 (487)
                      .                                     .|............|...|.++.++|++++|+++ .|+.|++
T Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~  206 (577)
T 2ymu_A          127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  206 (577)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             cccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEE
Confidence            0                                     0121222222336788899999999999999999 9999999


Q ss_pred             EEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccc
Q 011368          230 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  309 (487)
Q Consensus       230 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  309 (487)
                      ||..  +....       .+.+|...|.+++|+|++ .+|++++.|+.|++||.... ..    ..+.+           
T Consensus       207 w~~~--~~~~~-------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~i~~w~~~~~-~~----~~~~~-----------  260 (577)
T 2ymu_A          207 WNRN--GQLLQ-------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LL----QTLTG-----------  260 (577)
T ss_dssp             ECTT--SCEEE-------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSC-EE----EEECC-----------
T ss_pred             EeCC--CcEEE-------EEecCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCC-EE----EEEec-----------
Confidence            9975  33333       246788999999999999 99999999999999996542 22    44444           


Q ss_pred             cccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE
Q 011368          310 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  388 (487)
Q Consensus       310 ~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg  388 (487)
                        |...|.+++|+|++++|++++ ++.|++||..  ++.+..+.+|...+               ++++|+|++++|+++
T Consensus       261 --~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~t~  321 (577)
T 2ymu_A          261 --HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDGQTIASA  321 (577)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCSSCE---------------EEEEECTTSSEEEEE
T ss_pred             --CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCe---------------EEEEECCCCCEEEEE
Confidence              578999999999999999986 5999999974  67778888887654               699999999999999


Q ss_pred             cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCC-CCCccccccccCCCeEEEE
Q 011368          389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLA  466 (487)
Q Consensus       389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~-~~~~~~~~~~~~~~v~~~~  466 (487)
                      +.|+.|++||+...  ....+.+|...+.+++++|  +++.     +++|+.++. ++|+ .++.......|...|.+++
T Consensus       322 ~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~--~g~~-----l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~  392 (577)
T 2ymu_A          322 SDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA  392 (577)
T ss_dssp             ETTSCEEEEETTSC--EEEEECCCSSCEEEEEECT--TSSE-----EEEEETTSEEEEEETTCCEEEEEECCSSCEEEEE
T ss_pred             eCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECC--CCCE-----EEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEE
Confidence            99999999998644  4677889999999999998  6777     999999999 9994 3455566678999999999


Q ss_pred             EcCCCCEEEEecCCe-EEEEe
Q 011368          467 WHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       467 ~spd~~~la~~s~~~-~~i~~  486 (487)
                      |+||+++||+++.|+ +++|+
T Consensus       393 ~s~dg~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          393 FSPDGQTIASASDDKTVKLWN  413 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCEEEEEe
Confidence            999999999998665 88886

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.8e-42  Score=317.94  Aligned_cols=287  Identities=14%  Similarity=0.186  Sum_probs=232.1

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|++++|+|++++|++|+.||+|+|||..+++.                           ...+..|.      
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~------   97 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS------   97 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCC------
Confidence            346899999999999999999999999999999876653                           46677888      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++.+|++++.|+.|++|++.++.....                                   
T Consensus        98 ------~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~-----------------------------------  134 (340)
T 1got_B           98 ------SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVR-----------------------------------  134 (340)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCE-----------------------------------
T ss_pred             ------ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcce-----------------------------------
Confidence                  88999999  57899999999999999999976531100                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                             .... +.+|...|.++.|++++. ++++ .|+.|++||++++ ....       .+.+|...|.+++|+|++ 
T Consensus       135 -------~~~~-~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-~~~~-------~~~~h~~~v~~~~~~~~~-  196 (340)
T 1got_B          135 -------VSRE-LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-QQTT-------TFTGHTGDVMSLSLAPDT-  196 (340)
T ss_dssp             -------EEEE-EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-EEEE-------EECCCSSCEEEEEECTTS-
T ss_pred             -------eEEE-ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-cEEE-------EEcCCCCceEEEEECCCC-
Confidence                   1111 368999999999998875 6666 9999999999854 3433       356899999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.|+.|++||++++...    ..+..             |...|.+++|+|++++|++|+ |+.|++||++. .
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~----~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~  258 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCR----QTFTG-------------HESDINAICFFPNGNAFATGSDDATCRLFDLRA-D  258 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-T
T ss_pred             CEEEEEeCCCcEEEEECCCCeeE----EEEcC-------------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-C
Confidence            99999999999999999987644    45555             478999999999999999986 59999999986 6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      ..+..+..+...             ..+++++|+|+|++|++|+.||.|++||+.+++. ...+.               
T Consensus       259 ~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~~~---------------  309 (340)
T 1got_B          259 QELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLA---------------  309 (340)
T ss_dssp             EEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEE---------------
T ss_pred             cEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-eeEee---------------
Confidence            666555432211             1236999999999999999999999999987632 22232               


Q ss_pred             ccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          426 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                     +|...|.+++|+||+.+||+|+.|+ ++||+
T Consensus       310 -------------------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          310 -------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -------------------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                                           4555788999999999999988665 88885

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-42  Score=325.10  Aligned_cols=255  Identities=15%  Similarity=0.214  Sum_probs=195.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEec------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (487)
                      ...|...|++++|||||++||+|+.      |+.|++|+..++..                       .........+|.
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------------~~~~~~~~~~~~   94 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------------NESLCTAGVQTE   94 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------------------------CGGGCSEEEECS
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-----------------------ceeEecccCCCC
Confidence            4569999999999999999999997      67889998766643                       122233345566


Q ss_pred             cccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                                  ..|.+++|+  |++ .+++++.|++|++||+.+++......                           
T Consensus        95 ------------~~V~~~~~s--~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~---------------------------  132 (357)
T 4g56_B           95 ------------AGVTDVAWV--SEK-GILVASDSGAVELWEILEKESLLVNK---------------------------  132 (357)
T ss_dssp             ------------SCEEEEEEE--TTT-EEEEEETTSCEEEC--------CCCC---------------------------
T ss_pred             ------------CCEEEEEEc--CCC-CEEEEECCCEEEEeeccccceeEEEe---------------------------
Confidence                        889999995  565 46678899999999998876432210                           


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                      ....+|...|++++|+|++++|++| .|+.|++||+++ +....       .+.+|...|++++
T Consensus       133 ----------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-~~~~~-------~~~~h~~~v~~v~  188 (357)
T 4g56_B          133 ----------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-KAVLK-------SYNAHSSEVNCVA  188 (357)
T ss_dssp             ----------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-TEEEE-------EECCCSSCEEEEE
T ss_pred             ----------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE-------EEcCCCCCEEEEE
Confidence                            0125899999999999999999999 999999999994 44443       3578999999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKL  338 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~i  338 (487)
                      |+|++..++++++.||.|++||+++++..    ..+..           ..|...+.+++|+|++ .+|++|+ |+.|++
T Consensus       189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          189 ACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             ECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccceEEEeecccceeE
Confidence            99998568999999999999999987643    22222           2245789999999985 5777775 599999


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCC
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ||+++ ++++..+.+|...+               ++++|+|++ ++|++|+.|++|+|||++++
T Consensus       254 wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          254 VNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             EESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             EECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            99997 78888888888754               699999987 57999999999999999876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.5e-41  Score=309.20  Aligned_cols=294  Identities=14%  Similarity=0.219  Sum_probs=235.6

Q ss_pred             cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|.+.|++++|+|++ ++|++|+.|++|++|++.+....                      ....+..+++|.     
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~-----   65 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS-----   65 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS-----
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc-----
Confidence            34699999999999965 89999999999999998754321                      223467889999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|  ++++.+|++++.|++|++||+.+++....                                  
T Consensus        66 -------~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~----------------------------------  102 (319)
T 3frx_A           66 -------HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQR----------------------------------  102 (319)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred             -------ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEE----------------------------------
Confidence                   89999999  68999999999999999999998875443                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   +.+|...|.+++|+|++++|++| .|++|++||++ +. +..       .+.+|...|.++.|+|.+
T Consensus       103 -------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~-~~~-------~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A          103 -------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ-CLA-------TLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             -------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC-EEE-------EECCCSSCEEEEEECCC-
T ss_pred             -------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-eEE-------EEeccCCcEEEEEEccCC
Confidence                         37899999999999999999999 99999999997 33 332       346899999999999853


Q ss_pred             -----CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368          266 -----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  339 (487)
Q Consensus       266 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw  339 (487)
                           ...|++++.|+.|++||+++.+..    ..+.+             |...|.+++|+|+|++|++++ |+.|++|
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~-------------h~~~v~~~~~sp~g~~l~s~~~dg~i~iw  223 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIE----ADFIG-------------HNSNINTLTASPDGTLIASAGKDGEIMLW  223 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEE----EEECC-------------CCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhh----eeecC-------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                 148999999999999999886543    44444             578999999999999999986 6999999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP  419 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  419 (487)
                      |+.+ ++.+..+..+..                +.+++|+|++.+|++++.+ .+++|++..+.. ...+..+.      
T Consensus       224 d~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~-~~~~~~~~------  278 (319)
T 3frx_A          224 NLAA-KKAMYTLSAQDE----------------VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL-VDDLRPEF------  278 (319)
T ss_dssp             ETTT-TEEEEEEECCSC----------------EEEEEECSSSSEEEEEETT-EEEEEEETTEEE-EEEECCCC------
T ss_pred             ECCC-CcEEEEecCCCc----------------EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee-eeccCccc------
Confidence            9987 777877776543                2599999999999988765 599999986521 22221110      


Q ss_pred             eEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                                                      ......+...|.+++|+|||++|++|+.|+ ++||++
T Consensus       279 --------------------------------~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          279 --------------------------------AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             --------------------------------TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             --------------------------------cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence                                            011123455788999999999999999665 899973

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-41  Score=314.82  Aligned_cols=290  Identities=14%  Similarity=0.198  Sum_probs=233.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|+|++|+|++++||+|+.||+|+|||..+++.                           ...+..|.      
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~------  106 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPC------  106 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCC------
Confidence            456999999999999999999999999999999876643                           35666777      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++.+|++++.|+.+++|++........                                   
T Consensus       107 ------~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~-----------------------------------  143 (354)
T 2pbi_B          107 ------TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENM-----------------------------------  143 (354)
T ss_dssp             ------SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCS-----------------------------------
T ss_pred             ------CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccc-----------------------------------
Confidence                  78999999  68899999999999999999865421100                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--C
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--I  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~  264 (487)
                           ...... +.+|...|.+++|+|+++.|+++ .|++|++||++++ ....       .+.+|...|.+++|+|  +
T Consensus       144 -----~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~-------~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          144 -----AAKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQ-------SFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             -----GGGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEE-------EEECCSSCEEEEEECCCSS
T ss_pred             -----ccccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEE-------EEcCCCCCeEEEEEEeCCC
Confidence                 001111 36899999999999999999999 9999999999954 4443       2468999999999987  4


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      + .+|++++.||.|++||+++++..    ..+..             |...|.+++|+|++.+|++++ |+.|++||++.
T Consensus       210 g-~~l~sgs~Dg~v~~wd~~~~~~~----~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          210 G-NTFVSGGCDKKAMVWDMRSGQCV----QAFET-------------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             C-CEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             C-CEEEEEeCCCeEEEEECCCCcEE----EEecC-------------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            5 89999999999999999987654    55555             478999999999999999986 59999999986


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       ...+..+..+...             ..+.+++|+|++++|++|+.|+.|++||+.+++. ...+              
T Consensus       272 -~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l--------------  322 (354)
T 2pbi_B          272 -DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSIL--------------  322 (354)
T ss_dssp             -TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEE--------------
T ss_pred             -CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEE--------------
Confidence             6666555433221             1236899999999999999999999999987732 2222              


Q ss_pred             CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                      .+|...|.+++|+||+++||+|+.|+ ++||+
T Consensus       323 --------------------------------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          323 --------------------------------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --------------------------------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             --------------------------------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                                            24556888999999999999999665 88884

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-41  Score=311.55  Aligned_cols=300  Identities=18%  Similarity=0.309  Sum_probs=228.4

Q ss_pred             cccC-cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        30 ~h~~-~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .|.+ .|++++|+|+|++||+|+.|++|+||++.++...                        .......+|.       
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~-------   61 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ-------   61 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence            4766 8999999999999999999999999999876421                        0122346888       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++++|++++.|+++++|++..+.....                                    
T Consensus        62 -----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~------------------------------------   98 (345)
T 3fm0_A           62 -----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECV------------------------------------   98 (345)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEE------------------------------------
T ss_pred             -----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEE------------------------------------
Confidence                 89999999  67899999999999999999987643221                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                              .. +.+|...|.+++|+|++++|++| .|++|++||++.......+     ..+.+|...|.+++|+|++ .
T Consensus        99 --------~~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~~p~~-~  163 (345)
T 3fm0_A           99 --------TT-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV-----SVLNSHTQDVKHVVWHPSQ-E  163 (345)
T ss_dssp             --------EE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE-----EEECCCCSCEEEEEECSSS-S
T ss_pred             --------EE-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE-----EEecCcCCCeEEEEECCCC-C
Confidence                    11 37899999999999999999999 9999999999854332111     1356899999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +|++++.|+.|++||.+.+...  ....+.             +|...|.+++|+|+|++|++++ |+.|++||....+.
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~--~~~~~~-------------~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWV--CCATLE-------------GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN  228 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEE--EEEEEC-------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred             EEEEEeCCCcEEEEEecCCCEE--EEEEec-------------CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence            9999999999999999876421  012333             4688999999999999999986 59999999753221


Q ss_pred             --------------eeeeeec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          347 --------------PVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       347 --------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                                    ++..+.+ |..            .   |++++|+|++..|++++.|+.|++|+...+....     
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~h~~------------~---v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-----  288 (345)
T 3fm0_A          229 EQGVACSGSDPSWKCICTLSGFHSR------------T---IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-----  288 (345)
T ss_dssp             TTCCCCC---CEEEEEEEECSSCSS------------C---EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-----
T ss_pred             CccceeeccCCccceeEEecCCCCC------------c---EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-----
Confidence                          1112222 222            2   3699999999999999999999999997652210     


Q ss_pred             cCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCC-EEEEecCCe-EEEEe
Q 011368          412 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN-LIACANGNS-LFFHY  486 (487)
Q Consensus       412 ~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~s~~~-~~i~~  486 (487)
                            ...+..                           ......+|...|++++|+|++. +||+|+.|+ +++|+
T Consensus       289 ------~~~~~~---------------------------~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~  332 (345)
T 3fm0_A          289 ------QPTFSL---------------------------TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK  332 (345)
T ss_dssp             ------SCCEEE---------------------------EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             ------eeeEEE---------------------------EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence                  000000                           0011236778999999999984 899988665 88986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.5e-40  Score=300.42  Aligned_cols=286  Identities=22%  Similarity=0.386  Sum_probs=233.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|++++|++|+.||.|++|+..+++.                           ...+.+|.       
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------------~~~~~~h~-------   65 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------------EKTISGHK-------   65 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS-------
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------------chhhccCC-------
Confidence            45899999999999999999999999999999876643                           56788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++++|++++.|+.|++||+.+++....                                    
T Consensus        66 -----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------------------------------------  102 (312)
T 4ery_A           66 -----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKT------------------------------------  102 (312)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred             -----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEE------------------------------------
Confidence                 88999999  57899999999999999999998765443                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +.+|...|.+++|+|++++|++| .|+.|++||+++.. ....       +..|...|.+++|+|++ .
T Consensus       103 -----------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~-------~~~~~~~v~~~~~~~~~-~  162 (312)
T 4ery_A          103 -----------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKT-------LPAHSDPVSAVHFNRDG-S  162 (312)
T ss_dssp             -----------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEE-------ECCCSSCEEEEEECTTS-S
T ss_pred             -----------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEE-------ecCCCCcEEEEEEcCCC-C
Confidence                       36899999999999999999999 99999999998543 4332       46788999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +|++++.||.|++||+++++..    ..+..            .+...+..++|+|++++|++++ |+.|++||+++ ++
T Consensus       163 ~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~  225 (312)
T 4ery_A          163 LIVSSSYDGLCRIWDTASGQCL----KTLID------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GK  225 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE----EEECC------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TE
T ss_pred             EEEEEeCCCcEEEEECCCCcee----eEEec------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-Cc
Confidence            9999999999999999987643    22222            1346799999999999999986 59999999987 78


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+..+.+|.....         ++   ......+++.+|++|+.||.|++||+.+++ ....+.                
T Consensus       226 ~~~~~~~~~~~~~---------~~---~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~----------------  276 (312)
T 4ery_A          226 CLKTYTGHKNEKY---------CI---FANFSVTGGKWIVSGSEDNLVYIWNLQTKE-IVQKLQ----------------  276 (312)
T ss_dssp             EEEEECSSCCSSS---------CC---CEEEECSSSCEEEECCTTSCEEEEETTTCC-EEEEEC----------------
T ss_pred             EEEEEEecCCceE---------EE---EEEEEeCCCcEEEEECCCCEEEEEECCCch-hhhhhh----------------
Confidence            8888887765431         11   123334688999999999999999998763 233333                


Q ss_pred             cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec---CCeEEEEeC
Q 011368          427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHYA  487 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s---~~~~~i~~~  487 (487)
                                                    +|...|..++|+|++++||+++   +..+.+|..
T Consensus       277 ------------------------------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          277 ------------------------------GHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             ------------------------------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             ------------------------------ccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence                                          3445788899999999999886   445888863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.9e-39  Score=299.53  Aligned_cols=301  Identities=17%  Similarity=0.231  Sum_probs=229.5

Q ss_pred             ccccCcEEEEEE-----cC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCc
Q 011368           29 LQDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (487)
Q Consensus        29 ~~h~~~V~~~~~-----s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (487)
                      .+|.+.|++++|     ++ ++++|++|+.|++|+|||+.+.+..                    .........+.+|. 
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~-   76 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN-   76 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS-
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC-
Confidence            358999999999     77 8999999999999999999765421                    00123467789999 


Q ss_pred             ccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       103 ~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                                 ..|.+++|  ++++.++++++.|++|++||+.+++....                              
T Consensus        77 -----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~------------------------------  113 (343)
T 2xzm_R           77 -----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKR------------------------------  113 (343)
T ss_dssp             -----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEE------------------------------
T ss_pred             -----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEE------------------------------
Confidence                       89999999  57899999999999999999998865443                              


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                       +.+|...|.+++|+|++++|+++ .|+.|++||+. .......     ....+|...|.+++|
T Consensus       114 -----------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R          114 -----------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AEKENHSDWVSCVRY  170 (343)
T ss_dssp             -----------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CTTTSCSSCEEEEEE
T ss_pred             -----------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ecccCCCceeeeeee
Confidence                             37899999999999999999999 99999999998 3322221     234578899999999


Q ss_pred             ecCCC---------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          262 HPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       262 ~p~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      +|++.         .+|++++.|+.|++||... ...    ..+..             |...|.+++|+|+|++|++|+
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~~~~~-------------h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----YTFKA-------------HESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----EEEcC-------------ccccceEEEECCCCCEEEEEc
Confidence            99752         5899999999999999432 211    34444             578999999999999999986


Q ss_pred             -CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee-EEEe
Q 011368          333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVE  410 (487)
Q Consensus       333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~  410 (487)
                       |+.|++||+.....+...+... ..               +.+++|+|++++++++ .|+.|++|++.+++... ..+.
T Consensus       233 ~dg~v~iwd~~~~~~~~~~~~~~-~~---------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~  295 (343)
T 2xzm_R          233 KDKKLLIWDILNLTYPQREFDAG-ST---------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE  295 (343)
T ss_dssp             TTCEEEEEESSCCSSCSEEEECS-SC---------------EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC
T ss_pred             CCCeEEEEECCCCcccceeecCC-Cc---------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee
Confidence             6999999995434444444322 21               2699999999887655 57789999998764321 0111


Q ss_pred             ccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      .+          +  ..                       ......+|...|.+++|+|+|++||+|+.|+ +++|+
T Consensus       296 ~~----------~--~~-----------------------~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          296 AE----------P--IT-----------------------KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             CC----------S--GG-----------------------GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             cC----------c--ch-----------------------hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence            00          0  00                       1112235677899999999999999999665 88886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-40  Score=314.38  Aligned_cols=282  Identities=20%  Similarity=0.341  Sum_probs=213.2

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc-----
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-----  103 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----  103 (487)
                      +.|...|+|++|+|+|++||+|+ ++.++||++.+++.                           ...+.+|...     
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---------------------------~~~l~~~~~~~~~~~  112 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---------------------------VARLSDDSAANKDPE  112 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---------------------------EEEECC---------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---------------------------EEEecCccccccccc
Confidence            35999999999999999999987 68999999987754                           2233332200     


Q ss_pred             -cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          104 -FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       104 -~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                       +........+..|.+++|  +|++++|++++.|++|++||+.+++....                              
T Consensus       113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------  160 (393)
T 1erj_A          113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMI------------------------------  160 (393)
T ss_dssp             --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE------------------------------
T ss_pred             cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEE------------------------------
Confidence             000000011145999999  68999999999999999999998765443                              


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                       +.+|...|.+++|+|++++|+++ .|++|++||++++ .+...+        .+...+.+++|
T Consensus       161 -----------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~--------~~~~~v~~~~~  214 (393)
T 1erj_A          161 -----------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTL--------SIEDGVTTVAV  214 (393)
T ss_dssp             -----------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEE--------ECSSCEEEEEE
T ss_pred             -----------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-eeEEEE--------EcCCCcEEEEE
Confidence                             37899999999999999999999 9999999999854 333322        24567999999


Q ss_pred             ec-CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368          262 HP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  339 (487)
Q Consensus       262 ~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw  339 (487)
                      +| ++ .+|++++.|+.|++||++++...    ..+..      ......+|...|.+++|+|+|++|++|+ |+.|++|
T Consensus       215 ~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          215 SPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             CSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            99 77 99999999999999999987644    22221      0111245788999999999999999986 6999999


Q ss_pred             eCCCC-----------CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368          340 DIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       340 d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~  408 (487)
                      |++..           +.+...+.+|...+               ++++|+|++++|++|+.|+.|++||+.+++ ....
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~-~~~~  347 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLM  347 (393)
T ss_dssp             EC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEE
Confidence            99752           12334455565533               699999999999999999999999999874 4677


Q ss_pred             EeccCCccccceEee
Q 011368          409 VEAGKNENRKPILQA  423 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~  423 (487)
                      +.+|...|.++++.+
T Consensus       348 l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          348 LQGHRNSVISVAVAN  362 (393)
T ss_dssp             EECCSSCEEEEEECS
T ss_pred             ECCCCCCEEEEEecC
Confidence            788888777777765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-41  Score=323.65  Aligned_cols=338  Identities=11%  Similarity=0.172  Sum_probs=262.8

Q ss_pred             ccccCcEEEEEEcCCCC-EEEEE----------ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee
Q 011368           29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~-~l~~g----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (487)
                      +.+...|.+++|+|+++ +|++|          +.|+.|+||++.+++..                        +....+
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~~   64 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIASL   64 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCCC
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEEE
Confidence            34566899999999997 99999          88999999999876421                        011112


Q ss_pred             cCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccccc
Q 011368           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (487)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                       .|.            ..|.+++|  ++++.+|++++.|+.|++||+.......                          
T Consensus        65 -~~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~--------------------------  103 (416)
T 2pm9_A           65 -QVD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAI--------------------------  103 (416)
T ss_dssp             -CCS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCC--------------------------
T ss_pred             -ecC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccc--------------------------
Confidence             355            88999999  5789999999999999999998721000                          


Q ss_pred             CCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCC------ceeEEeecCCCCC
Q 011368          178 NPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD------QCFNIVDMKPSNM  249 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~------~~~~~~~~~~~~~  249 (487)
                                      .... .+.+|...|.+++|+|+ +++|+++ .|+.|++||+.+..      ....     ...+
T Consensus       104 ----------------~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~  161 (416)
T 2pm9_A          104 ----------------NSMA-RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT-----PGQS  161 (416)
T ss_dssp             ----------------CEEE-ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC-----CCCS
T ss_pred             ----------------cchh-hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc-----cccc
Confidence                            0011 13789999999999998 8999999 99999999998654      2221     1234


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL  328 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l  328 (487)
                      ..|...|.+++|+|++..+|++++.|+.|++||+++++..    ..+..|.       ...+|...|.+++|+|++ .++
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l  230 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTS-------PNSGIKQQLSVVEWHPKNSTRV  230 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCC-------CSSCCCCCEEEEEECSSCTTEE
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEeccc-------cccccCCceEEEEECCCCCCEE
Confidence            6788999999999994389999999999999999987654    4444321       012346789999999997 578


Q ss_pred             EEEeC-C---eEEEEeCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC
Q 011368          329 LSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       329 ~s~~d-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +++++ +   .|++||+++...++..+. +|...+               ++++|+| ++++|++++.||.|++||+.++
T Consensus       231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             EEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            87764 6   999999987446777777 776644               6999999 9999999999999999999987


Q ss_pred             CceeEEEeccCCccccceEeeCCcc-ccccccceeeecccce-ecCCCCCccc--cc-----------------------
Q 011368          403 SAGGITVEAGKNENRKPILQAAPRA-RRSSLSNLTRGLYRQA-HENSSSGHHE--LS-----------------------  455 (487)
Q Consensus       403 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~g~~~~~-~~w~~~~~~~--~~-----------------------  455 (487)
                       .....+.+|...+..++|+|  ++ .+     +++++.|+. ++|+......  ..                       
T Consensus       296 -~~~~~~~~~~~~v~~~~~s~--~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (416)
T 2pm9_A          296 -EQLSQFPARGNWCFKTKFAP--EAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREES  367 (416)
T ss_dssp             -CEEEEEECSSSCCCCEEECT--TCTTE-----EEECCSSSEEEEEESCCCCCSSCC----------------------C
T ss_pred             -ccceeecCCCCceEEEEECC--CCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccc
Confidence             55788999999999999998  44 56     899999999 9994432211  10                       


Q ss_pred             ------------cccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          456 ------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       456 ------------~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                                  ..+..++..++|+|||++||+++.|+ ++||++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          368 KEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             CSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             ccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                        01567788999999999999999665 888864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-40  Score=311.92  Aligned_cols=304  Identities=15%  Similarity=0.191  Sum_probs=240.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|.+.|++++|+|++++|++|+.||+|+|||..+++.                           ...+.+|.      
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---------------------------~~~~~~h~------  108 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---------------------------THAIKLHC------  108 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---------------------------EEEEECCC------
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------------ceEEecCC------
Confidence            446999999999999999999999999999999876653                           57788898      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++++|++++.|+.+++|++........                                   
T Consensus       109 ------~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~-----------------------------------  145 (380)
T 3iz6_a          109 ------PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG-----------------------------------  145 (380)
T ss_dssp             ------TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC-----------------------------------
T ss_pred             ------CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC-----------------------------------
Confidence                  88999999  68999999999999999999975431100                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-C
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-I  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~  264 (487)
                           .......+.+|.+.|.++.|.|+ +..|++| .|++|++||+.++ .....+..  ....+|...|.+++|+| +
T Consensus       146 -----~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~--~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          146 -----NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-QRISIFGS--EFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             -----SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC-CEEEEECC--CSSSSCCSCEEEEEECSSS
T ss_pred             -----CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC-cEEEEeec--ccCCCCccCeEEEEeecCC
Confidence                 00011114799999999999996 4568888 9999999999954 44443311  12357889999999987 5


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      + .+|++|+.|+.|++||++.....   ...+.+             |...|.+++|+|++++|++|+ |++|++||+++
T Consensus       218 ~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          218 A-NMFISGSCDTTVRLWDLRITSRA---VRTYHG-------------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             C-CEEEEEETTSCEEEEETTTTCCC---CEEECC-------------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             C-CEEEEEECCCeEEEEECCCCCcc---eEEECC-------------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence            5 99999999999999999854211   244555             578999999999999999986 59999999997


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEE----eccCCccccc
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV----EAGKNENRKP  419 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~  419 (487)
                       +..+..+..+.....        .....+++++|+|+|++|++|+.||.|++||+.+++. ...+    .+|...|.++
T Consensus       281 -~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          281 -GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             -TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEE
T ss_pred             -CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEE
Confidence             777777765432110        0011135999999999999999999999999988743 4444    6899999999


Q ss_pred             eEeeCCccccccccceeeecccce-ecCCCC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      +++|  ++..     |++|+.|+. ++|...
T Consensus       351 ~~s~--dg~~-----l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          351 GLSS--DGSA-----LCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             EECS--SSSE-----EEEECTTSCEEEEECC
T ss_pred             EECC--CCCE-----EEEeeCCCCEEEEecC
Confidence            9998  6777     999999999 999543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.9e-40  Score=314.07  Aligned_cols=329  Identities=12%  Similarity=0.129  Sum_probs=254.3

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      +.+++++|+|++++|++|+.||.|++||+.+++..                           ..+..|.           
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~~-----------   98 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRAD-----------   98 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSCC-----------
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecCC-----------
Confidence            34568999999999999999999999998876542                           2233332           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                         +..+.+. ++++++|++++.|+.|++||+.+++....                                        
T Consensus        99 ---~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------  134 (420)
T 3vl1_A           99 ---YTAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQREI----------------------------------------  134 (420)
T ss_dssp             ---EEEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEEE----------------------------------------
T ss_pred             ---ceEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceeee----------------------------------------
Confidence               4444433 58899999999999999999987765443                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             +.+|...|++++|+|++++|+++ .|+.|++||+.+... ..       .+.+|...|.+++|+|++ .+|++
T Consensus       135 -------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~-------~~~~h~~~v~~~~~~~~~-~~l~s  198 (420)
T 3vl1_A          135 -------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PR-------TLIGHRATVTDIAIIDRG-RNVLS  198 (420)
T ss_dssp             -------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CE-------EEECCSSCEEEEEEETTT-TEEEE
T ss_pred             -------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ce-------EEcCCCCcEEEEEEcCCC-CEEEE
Confidence                   36899999999999999999999 999999999985543 32       246899999999999999 99999


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCcc-----------ccccccccceeEEEEcCCCCEEEEEe-CCeEEEE
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  339 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----------~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iw  339 (487)
                      ++.|+.|++||+++++..    ..+..|.......           .....+...+.+++|+|++++|++++ ||.|++|
T Consensus       199 ~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          199 ASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             EETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             EcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence            999999999999988754    4554421111110           01122346677778899999999986 5999999


Q ss_pred             eCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCCCceeEEEec-cCCcc
Q 011368          340 DIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEA-GKNEN  416 (487)
Q Consensus       340 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v  416 (487)
                      |+++ +..+..+. .|...+               ++++|+|+++ +|++|+.||.|++||+.+++.....+.. |..++
T Consensus       275 d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v  338 (420)
T 3vl1_A          275 NVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI  338 (420)
T ss_dssp             ETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE
T ss_pred             ECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc
Confidence            9987 55555543 344433               6999999999 9999999999999999998666677776 66667


Q ss_pred             ccceEeeCCccccccccceeeecccce-ecCCCCC-----------ccccccccCCCeEEEEEcCCCC----EEEEecCC
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHPTTN----LIACANGN  480 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~-----------~~~~~~~~~~~v~~~~~spd~~----~la~~s~~  480 (487)
                      ..+.+ +  ++.+     |++++.|+. ++|+...           .......+...|.+++|+|+++    ++++|+.+
T Consensus       339 ~~~~~-~--~~~~-----l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          339 NNVYF-A--AGAL-----FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             EEEEE-E--TTEE-----EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             eEEEe-C--CCCE-----EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence            77754 4  4556     999999999 9994322           1223457788999999999999    77788888


Q ss_pred             eEEEEeC
Q 011368          481 SLFFHYA  487 (487)
Q Consensus       481 ~~~i~~~  487 (487)
                      .+.+|+.
T Consensus       411 ~~~~~~~  417 (420)
T 3vl1_A          411 FCALYNL  417 (420)
T ss_dssp             EEEEEES
T ss_pred             eEEEEec
Confidence            8889974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-39  Score=299.98  Aligned_cols=298  Identities=15%  Similarity=0.202  Sum_probs=217.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cC-CCccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDY  106 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~  106 (487)
                      ..|.++|++++|+|+  +||+|+.|++|+||++.++.                         .+....+ .+ |.     
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-------------------------~~~~~~~~~~~h~-----   58 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-------------------------FTLIDVLDETAHK-----   58 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-------------------------CEEEEEECTTCCC-----
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-------------------------eEEEEEEecCCcc-----
Confidence            358999999999987  99999999999999987652                         1223444 34 87     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|  +|++.+|++++.|++|++||+.........                                 
T Consensus        59 -------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~---------------------------------   96 (330)
T 2hes_X           59 -------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFE---------------------------------   96 (330)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------CC---------------------------------
T ss_pred             -------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcccc---------------------------------
Confidence                   88999999  578999999999999999998643210000                                 


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                            ...... +.+|...|.+++|+|++++|++| .|++|++||++..+...+.+    ..+.+|...|.+++|+|++
T Consensus        97 ------~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~----~~~~~h~~~v~~v~~~p~~  165 (330)
T 2hes_X           97 ------MDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----SVLQEHSQDVKHVIWHPSE  165 (330)
T ss_dssp             ------CEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE----EEECCCSSCEEEEEECSSS
T ss_pred             ------ceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE----EEeccCCCceEEEEECCCC
Confidence                  001111 37899999999999999999999 99999999995333222111    1357899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--CCEEEEEe-CCeEEEEeCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD-YMNLKLWDIR  342 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~-d~~i~iwd~~  342 (487)
                       .+|++++.|+.|++||.+++..  .....+.+             |...|.+++|+|+  +.+|++++ |++|++||++
T Consensus       166 -~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          166 -ALLASSSYDDTVRIWKDYDDDW--ECVAVLNG-------------HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             -SEEEEEETTSCEEEEEEETTEE--EEEEEECC-------------CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             -CEEEEEcCCCeEEEEECCCCCe--eEEEEccC-------------CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence             9999999999999999886521  11134444             5889999999998  67888886 6999999986


Q ss_pred             CCC-------ceeeeeec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce--eEEEecc
Q 011368          343 MDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAG  412 (487)
Q Consensus       343 ~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~  412 (487)
                      ...       .....+.. |...               |++++|++++ +|++++.||.|+||+..+++..  ...+.+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQ---------------VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSC---------------EEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             CCCccccceeEEeeecccccccc---------------eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            421       22233332 4432               2699999765 8999999999999999877422  2334678


Q ss_pred             CC-ccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          413 KN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       413 ~~-~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      .. .+..++++|..++.+     |++|+.|+. ++|+.
T Consensus       294 ~~~~v~~v~~~~~~~~~~-----las~s~Dg~v~~W~~  326 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTI-----LATGGDDGIVNFWSL  326 (330)
T ss_dssp             TTSCEEEEEEC-----CC-----EEEEETTSEEEEEEC
T ss_pred             ccceEEEEEEecCCCceE-----EEEecCCCcEEEEEe
Confidence            77 899999998655667     999999999 99954

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-39  Score=312.52  Aligned_cols=330  Identities=14%  Similarity=0.160  Sum_probs=257.9

Q ss_pred             ccccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEe----eCCcCCCCcccchhhhhccccccccCCCcceeEeeecC--
Q 011368           27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--   99 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   99 (487)
                      ....|.+.|++++|+|+++ +||+|+.||.|++|++    .+++..       -.+          .+.......+.+  
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~  102 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------WKL----------TIIAELRHPFALSA  102 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------EEE----------EEEEEEECCCCCC-
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------ccc----------cccccccccccccc
Confidence            4455678999999999999 9999999999999999    666520       000          000111111222  


Q ss_pred             ----CCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccccc
Q 011368          100 ----HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (487)
Q Consensus       100 ----h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                          |.            +.|.+++|  +|++++|++++.|+.|++||. +++....                       
T Consensus       103 ~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~~~~~-----------------------  144 (425)
T 1r5m_A          103 SSGKTT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGALLNV-----------------------  144 (425)
T ss_dssp             -----C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEE-----------------------
T ss_pred             cccCCC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCCeeee-----------------------
Confidence                45            78999999  578999999999999999994 3333222                       


Q ss_pred             ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368          176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  254 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  254 (487)
                                              +..|...|.+++|+|++++|+++ .|+.|++||+.+. .....+       ..+..
T Consensus       145 ------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-------~~~~~  192 (425)
T 1r5m_A          145 ------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-TVMQHF-------ELKET  192 (425)
T ss_dssp             ------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-EEEEEE-------CCC--
T ss_pred             ------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEEEe-------ecccc
Confidence                                    36899999999999999999999 9999999999844 444332       22333


Q ss_pred             c---------------EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEE
Q 011368          255 V---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  319 (487)
Q Consensus       255 ~---------------v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v  319 (487)
                      .               +.++.|+|++  .+++++.+|.|++||+++++..    ..+..             |...|.++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~~-------------~~~~i~~~  253 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLIG-------------HHGPISVL  253 (425)
T ss_dssp             -------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEECC-------------CSSCEEEE
T ss_pred             CccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeecc-------------CCCceEEE
Confidence            3               8899999985  6899999999999999987544    44444             46889999


Q ss_pred             EEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          320 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       320 ~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      +|+|++++|++++ ++.|++||++. ++.+..+..|...+               .+++|+|++ +|++++.||.|++||
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~d~~i~i~d  316 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGDD-KVISCSMDGSVRLWS  316 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETTT-EEEEEETTSEEEEEE
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCCC-EEEEEeCCCcEEEEE
Confidence            9999999999986 59999999987 77788887776644               699999999 999999999999999


Q ss_pred             eCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC--C--------------------ccccc
Q 011368          399 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G--------------------HHELS  455 (487)
Q Consensus       399 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~--~--------------------~~~~~  455 (487)
                      +.++ .....+..|..++..+.++|  ++.+     +++++.++. .+|+..  .                    .....
T Consensus       317 ~~~~-~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (425)
T 1r5m_A          317 LKQN-TLLALSIVDGVPIFAGRISQ--DGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY  388 (425)
T ss_dssp             TTTT-EEEEEEECTTCCEEEEEECT--TSSE-----EEEEETTSCEEEEECHHHHC--------------CEECCEEEEE
T ss_pred             CCCC-cEeEecccCCccEEEEEEcC--CCCE-----EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh
Confidence            9887 55778889999999999998  5666     999999998 999443  2                    34455


Q ss_pred             cccCC--CeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          456 YNLSS--KLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       456 ~~~~~--~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                      ..|..  .|.+++|+|++++||+++.|+ +++|+.
T Consensus       389 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          389 QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             cCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence            56765  999999999999999988665 999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-38  Score=318.38  Aligned_cols=387  Identities=12%  Similarity=0.120  Sum_probs=291.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|+|++|++++ ++.|+||++.++..                       ..+....+.+|.       
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~-------   63 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG-------   63 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence            35788999999999999999998 78999999987611                       112357889998       


Q ss_pred             ccccccc-eeEEEEEecC--CCcEEEEEeCCCcEEEEEcccc------ceeEeee-cCCCCceeeeeccccccccccccC
Q 011368          109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKE-MDHFPFVSSENTLLAEKNFMNEHN  178 (487)
Q Consensus       109 ~~~~~~~-I~~v~~~~~~--~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                           .. |.+++|  +|  ++++|++++.|+.|++||+.++      ....... ......+.++.+.+ ++..++.+.
T Consensus        64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  135 (615)
T 1pgu_A           64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVG  135 (615)
T ss_dssp             -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEec
Confidence                 88 999999  57  8999999999999999999755      2222222 22455677777765 445555554


Q ss_pred             CCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC--
Q 011368          179 PPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE--  254 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--  254 (487)
                      ...........|+.......+ .+|...|.+++|+|+++ .++++ .|+.|++||+.+ ......       +.+|..  
T Consensus       136 ~~~~~~~~v~~~d~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~-------~~~~~~~~  206 (615)
T 1pgu_A          136 EGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSAS-------DRTHHKQG  206 (615)
T ss_dssp             CCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEE-------ECSSSCTT
T ss_pred             cCCCCccEEEEEECCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeee-------ecccCCCC
Confidence            444444556667766666665 89999999999999998 78888 999999999984 444432       467888  


Q ss_pred             -cEEEEEEecC-CCCEEEEEeCCCeEEEEEccCCccccccceee-cccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          255 -VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       255 -~v~~v~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                       .|.+++|+|+ + .+|++++.||.|++||+++++..    ..+ ..          ...|...|.+++|+ ++++|+++
T Consensus       207 ~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v~~~~~~-~~~~l~~~  270 (615)
T 1pgu_A          207 SFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGIFALSWL-DSQKFATV  270 (615)
T ss_dssp             CCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCEEEEEES-SSSEEEEE
T ss_pred             ceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCceEEEEEc-CCCEEEEE
Confidence             8999999999 8 99999999999999999987654    344 20          01357889999999 99999988


Q ss_pred             e-CCeEEEEeCCCCCceeeeeecc---------------------------------------------ccccc------
Q 011368          332 D-YMNLKLWDIRMDSTPVATFKIH---------------------------------------------EHLRP------  359 (487)
Q Consensus       332 ~-d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~~------  359 (487)
                      + |+.|++||+++ ++.+..+..+                                             ...+.      
T Consensus       271 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  349 (615)
T 1pgu_A          271 GADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP  349 (615)
T ss_dssp             ETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred             cCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence            6 59999999875 4443333322                                             00000      


Q ss_pred             ----------------------------------------------ccccc-----------------------------
Q 011368          360 ----------------------------------------------KLCDL-----------------------------  364 (487)
Q Consensus       360 ----------------------------------------------~~~~~-----------------------------  364 (487)
                                                                    .++++                             
T Consensus       350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  429 (615)
T 1pgu_A          350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL  429 (615)
T ss_dssp             TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred             cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence                                                          00000                             


Q ss_pred             -----------------------------------------------------cCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          365 -----------------------------------------------------YNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       365 -----------------------------------------------------~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                                                                           .-......+++++|+|++++|++|+.|
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  509 (615)
T 1pgu_A          430 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM  509 (615)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence                                                                 000011135789999999999999999


Q ss_pred             CcEEEEEeCCCCceeEEEec-cCCccccceEeeCC--------ccccccccceeeecccce-ecCCCC---Ccccccccc
Q 011368          392 NLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNL  458 (487)
Q Consensus       392 g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~l~~g~~~~~-~~w~~~---~~~~~~~~~  458 (487)
                      |.|++||+.+++ ....+.+ |...+.+++|+|..        ++++     |++|+.|+. ++|+..   .......+|
T Consensus       510 g~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-----l~~~~~dg~i~iw~~~~~~~~~~~~~~h  583 (615)
T 1pgu_A          510 GKILLYDLQSRE-VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIYSVKRPMKIIKALNAH  583 (615)
T ss_dssp             SCEEEEETTTTE-EEECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred             CeEEEeeCCCCc-ceeEeecCCCCceeEEEEcCccccccccccCCCE-----EEEEcCCCcEEEEECCCCceechhhhcC
Confidence            999999999884 4566776 99999999999832        5666     999999999 999443   445566789


Q ss_pred             CCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          459 SSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       459 ~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                      ...|.+++|+||++ |++++.|+ +++|+.
T Consensus       584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          584 KDGVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             TTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             ccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            99999999999999 99888665 999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-38  Score=346.67  Aligned_cols=372  Identities=14%  Similarity=0.199  Sum_probs=276.1

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|++++|+|+|++||+|+.||+|+|||+.+++.                           +..+.+|.      
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~---------------------------~~~~~~h~------  657 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---------------------------LLDIKAHE------  657 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS------
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEeccCC------
Confidence            346999999999999999999999999999999987754                           57788998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc-ccccccccCCCCcceee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  186 (487)
                            ..|.+++|  +|++++|++++.|++|++||+.+++...... .....+.++.+.+. +..+++.+..+...   
T Consensus       658 ------~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v---  725 (1249)
T 3sfz_A          658 ------DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFL---  725 (1249)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCE---
T ss_pred             ------CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeE---
Confidence                  89999999  6889999999999999999999987766544 34556777777764 33444444443332   


Q ss_pred             eeeee--ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCC-----------------
Q 011368          187 HLEWT--ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-----------------  246 (487)
Q Consensus       187 ~~~~~--~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-----------------  246 (487)
                       ..|+  ...+...+ .+|...|++++|+|++++++++ .|+.|++||+.+.. ....+....                 
T Consensus       726 -~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~  802 (1249)
T 3sfz_A          726 -KLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVK  802 (1249)
T ss_dssp             -EEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE-EEEEEECCCCC--------CCCCCBC
T ss_pred             -EEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc-ccceecccccccccCCccccccceEE
Confidence             2243  33444444 7899999999999999999999 99999999998543 222211100                 


Q ss_pred             -------------------------------CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee
Q 011368          247 -------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  295 (487)
Q Consensus       247 -------------------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  295 (487)
                                                     ....+|...|.+++|+|++ .++++++.||.|++||+.++...    ..
T Consensus       803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~----~~  877 (1249)
T 3sfz_A          803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKV----AD  877 (1249)
T ss_dssp             CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEE----EE
T ss_pred             EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCcee----ee
Confidence                                           0012677889999999999 99999999999999999987643    44


Q ss_pred             ecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC-------------------------------
Q 011368          296 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM-------------------------------  343 (487)
Q Consensus       296 ~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~-------------------------------  343 (487)
                      +.+             |...|.+++|+|+|++|++++ |+.|++||+..                               
T Consensus       878 ~~~-------------h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  944 (1249)
T 3sfz_A          878 CRG-------------HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR  944 (1249)
T ss_dssp             ECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred             cCC-------------CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence            444             356667777777776666654 46666666431                               


Q ss_pred             -----------------------------------------------CCceeeeeecccccccccccccCCCCcceeeEE
Q 011368          344 -----------------------------------------------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  376 (487)
Q Consensus       344 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (487)
                                                                     .+..+..+.+|...               |+++
T Consensus       945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~---------------v~~l 1009 (1249)
T 3sfz_A          945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA---------------VRHI 1009 (1249)
T ss_dssp             SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC---------------CCCE
T ss_pred             ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc---------------eEEE
Confidence                                                           02222222223222               2578


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEeCCCC---------------------------------------ceeEEEeccCCccc
Q 011368          377 SVSGDGLHFATGSYSNLLRIFSHGVGS---------------------------------------AGGITVEAGKNENR  417 (487)
Q Consensus       377 ~~s~d~~~l~sg~~dg~i~iwd~~~~~---------------------------------------~~~~~~~~~~~~v~  417 (487)
                      +|+|+|++|++++.||.|++||+.+++                                       .....+.+|...+.
T Consensus      1010 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 1089 (1249)
T 3sfz_A         1010 QFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089 (1249)
T ss_dssp             EECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCC
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEE
Confidence            888888888888888877777766532                                       22445667888899


Q ss_pred             cceEeeCCccccccccceeeecccce-ecCCC--CCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          418 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                      +++++|  ++..     +++++.|+. ++|+.  +.......+|...|.+++|+||+++||+++.|+ +++|+.
T Consensus      1090 ~~~~s~--d~~~-----l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A         1090 SCAISS--DATK-----FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp             CEEECS--SSSS-----CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred             EEEECC--CCCE-----EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            999988  6666     999999999 99943  455666778999999999999999999999765 899973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-39  Score=306.66  Aligned_cols=301  Identities=15%  Similarity=0.160  Sum_probs=241.5

Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                      ......++++|.            +.|.+++|  +|++++|++|+.|++|++||+.+++....                 
T Consensus        55 ~~~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-----------------  103 (380)
T 3iz6_a           55 DLVCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTHA-----------------  103 (380)
T ss_dssp             CCEEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEEE-----------------
T ss_pred             eeEEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccceE-----------------
Confidence            345678899999            99999999  57899999999999999999988765443                 


Q ss_pred             ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368          170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  248 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~  248 (487)
                                                    +..|...|.+++|+|++++|++| .|+.|++|++.......... .....
T Consensus       104 ------------------------------~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~-~~~~~  152 (380)
T 3iz6_a          104 ------------------------------IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM-PVSRV  152 (380)
T ss_dssp             ------------------------------EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS-TTCCB
T ss_pred             ------------------------------EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc-cceee
Confidence                                          36889999999999999999999 99999999997432110000 00134


Q ss_pred             CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCE
Q 011368          249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQH  327 (487)
Q Consensus       249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~  327 (487)
                      +.+|...|.++.|.|++...|++++.|+.|++||+++++..    ..+..        ....+|...|.++.|++ ++.+
T Consensus       153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCccCeEEEEeecCCCCE
Confidence            67899999999999986478999999999999999988654    33321        01235688999999987 7889


Q ss_pred             EEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          328 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       328 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      |++|+ |+.|++||++.....+..+.+|...+               ++++|+|++++|++|+.||+|++||+.++.. .
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-~  284 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-L  284 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSSCEEEEETTTTEE-E
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCCeEEEEECCCCcE-E
Confidence            99986 69999999986567888898888755               5999999999999999999999999998743 4


Q ss_pred             EEEeccC-------CccccceEeeCCccccccccceeeecccce-ecCCC--CCccccc----cccCCCeEEEEEcCCCC
Q 011368          407 ITVEAGK-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS----YNLSSKLLHLAWHPTTN  472 (487)
Q Consensus       407 ~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~----~~~~~~v~~~~~spd~~  472 (487)
                      ..+..+.       ..+..++|+|  ++.+     +++|+.|+. ++|+.  ++.....    .+|...|.+++|+|||+
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  357 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSI--SGRL-----LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS  357 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECS--SSSE-----EEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred             EEecccccccccccCceEEEEECC--CCCE-----EEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence            4554432       2478889988  6777     999999999 99954  3333322    57899999999999999


Q ss_pred             EEEEecCCe-EEEEeC
Q 011368          473 LIACANGNS-LFFHYA  487 (487)
Q Consensus       473 ~la~~s~~~-~~i~~~  487 (487)
                      +||+|+.|+ ++||+.
T Consensus       358 ~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          358 ALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             EEEEECTTSCEEEEEC
T ss_pred             EEEEeeCCCCEEEEec
Confidence            999999665 999973

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-40  Score=319.84  Aligned_cols=341  Identities=12%  Similarity=0.035  Sum_probs=236.6

Q ss_pred             CccccccCcEEEEEEcCCC---------CEEEEE-------------------ecCCcEEEEEeeCCcCCCCcccchhhh
Q 011368           26 DEELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNTPNQHISRSEL   77 (487)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~---------~~l~~g-------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~   77 (487)
                      +..+.+.+.|.+|+|+|++         ++||+|                   +.|++|+||++.+++..          
T Consensus       127 ~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~----------  196 (524)
T 2j04_B          127 GFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH----------  196 (524)
T ss_dssp             EEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC----------
T ss_pred             eEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC----------
Confidence            3345567889999999986         677764                   46789999999877531          


Q ss_pred             hccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec----CCCcEEEEEeCCCcEEEEEccccceeEee
Q 011368           78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIK  153 (487)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  153 (487)
                                   ......+.+|.            +.|.+++|+|.    +++.+|++++.|++|++||+..+......
T Consensus       197 -------------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          197 -------------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             -------------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             -------------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence                         11223456676            88999999764    34679999999999999999866421000


Q ss_pred             ecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEc
Q 011368          154 EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  232 (487)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~  232 (487)
                      ...                                   ...+... +.+|...|++++|++++ .|++| .||+|++||+
T Consensus       252 ~~~-----------------------------------~~~p~~~-l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~  294 (524)
T 2j04_B          252 FKM-----------------------------------CEKPSLT-LSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDL  294 (524)
T ss_dssp             EEC-----------------------------------CCSCSEE-ECCTTTCEEEEEESSSS-EEEEEETTSEEEEEET
T ss_pred             cee-----------------------------------ecCceEE-EEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEEC
Confidence            000                                   0011112 37899999999999864 78998 9999999999


Q ss_pred             cCCCceeEEeecCCCCCCCCCCcEEEE--EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccc
Q 011368          233 EISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  310 (487)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  310 (487)
                      +++.....       .+.+|...|.+|  .|+|++..+|++++.|++|+|||+++++..    ..+.+|..         
T Consensus       295 ~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~~~~~---------  354 (524)
T 2j04_B          295 TDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTVSRFR---------  354 (524)
T ss_dssp             TBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEEEECS---------
T ss_pred             CCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cccccccc---------
Confidence            86543322       246899999999  467764378999999999999999987644    44444310         


Q ss_pred             ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368          311 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  389 (487)
Q Consensus       311 ~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~  389 (487)
                        ...|.+++|+|+++.+++++ |++|++||++. +.++..+.+|...+               ++++|||+|++|++|+
T Consensus       355 --~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          355 --GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             --CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EEEECCSSCCBCEEEE
T ss_pred             --cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EEEEeCCCCCeEEEEE
Confidence              12478999999999999875 59999999987 77777888888755               6999999999999999


Q ss_pred             CCCcEEEEEeCCCCceeEEEec-----cCCccccceEeeCCccccccccceeeecccceecC--C-CCCccccccccCCC
Q 011368          390 YSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S-SSGHHELSYNLSSK  461 (487)
Q Consensus       390 ~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w--~-~~~~~~~~~~~~~~  461 (487)
                      .||+|++||+..+  ....++.     +...+..++++|  ++..     + .. .+...+|  + .+.....+.+|...
T Consensus       417 ~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----~-~~-~~~~~~~~~~~~g~~~~~l~gh~~~  485 (524)
T 2j04_B          417 ADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSI--KDDK-----Y-RI-DSSYEVYPLTVNDVSKAKIDAHGIN  485 (524)
T ss_dssp             TTTEEECCBSCSS--TTTCC------CCCCEEEECBCCS--SSCE-----E-EE-CCCCCCCC-------------CCCS
T ss_pred             CCCEEEEEechHh--hccccccCccceeeeEEEEeccCC--CCCe-----E-Ec-cCCceecccccCCcceeeecCCCce
Confidence            9999999998754  1111111     112456777777  3332     2 22 2222344  3 34556677899999


Q ss_pred             eEEEEEcCCCC---EEEEecCCe-EEEEeC
Q 011368          462 LLHLAWHPTTN---LIACANGNS-LFFHYA  487 (487)
Q Consensus       462 v~~~~~spd~~---~la~~s~~~-~~i~~~  487 (487)
                      |.+|+|||+++   +||+|+.++ ++||..
T Consensus       486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             CCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             EEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence            99999999965   899999765 889863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=293.23  Aligned_cols=249  Identities=18%  Similarity=0.221  Sum_probs=200.6

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+|++ .|++|+.||+|+|||+.+++..                       ......+.+|.       
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~-------  127 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD-------  127 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence            3456789999999985 6889999999999999988652                       22334566898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           +.|.+|+|  +|++++|++|+.|++|++||+.+++....                                    
T Consensus       128 -----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~~~~------------------------------------  164 (344)
T 4gqb_B          128 -----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVVLSS------------------------------------  164 (344)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE------------------------------------
T ss_pred             -----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEE------------------------------------
Confidence                 89999999  68999999999999999999998876544                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                 +.+|...|++++|+|++. +|++| .|++|++||++++.. ...+     ....+...+.+++|+|++.
T Consensus       165 -----------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~-----~~~~~~~~~~~~~~~p~~~  227 (344)
T 4gqb_B          165 -----------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQI-----GCSAPGYLPTSLAWHPQQS  227 (344)
T ss_dssp             -----------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEEC-----C----CCCEEEEEECSSCT
T ss_pred             -----------EcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeee-----ecceeeccceeeeecCCCC
Confidence                       378999999999999875 67888 999999999995543 3321     2345666799999999765


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~~  344 (487)
                      .+|++|+.||.|++||+++++.+    ..+.+             |...|++++|+|++ ++|++|+ |++|+|||+++ 
T Consensus       228 ~~l~sg~~dg~v~~wd~~~~~~~----~~~~~-------------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-  289 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKSTSCV----LSSAV-------------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-  289 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC--CC----EEEEC-------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-
T ss_pred             cceEEeccCCcEEEEECCCCcEE----EEEcC-------------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-
Confidence            88999999999999999988754    55666             47899999999998 5788886 69999999986 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++ +..+.+|...+               ++++|+|+++ +|++|+.||+|++|++.+.
T Consensus       290 ~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          290 SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            54 44567887754               6999999886 5679999999999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-38  Score=328.79  Aligned_cols=324  Identities=16%  Similarity=0.168  Sum_probs=265.0

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|++++||+|+.||.|+|||+.+++.                           ...+.+|.       
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------------------------~~~~~~~~-------   55 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---------------------------VRSIQVTE-------   55 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------------EEEEecCC-------
Confidence            35889999999999999999999999999999877653                           57788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|+  |++++|++++.|+.|++||+.+++....                                    
T Consensus        56 -----~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~------------------------------------   92 (814)
T 3mkq_A           56 -----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVD------------------------------------   92 (814)
T ss_dssp             -----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred             -----CcEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEE------------------------------------
Confidence                 899999995  6899999999999999999998875543                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~  266 (487)
                                 +.+|...|++++|+|++++|+++ .|+.|++||+..+......       +.+|...|.+++|+| ++ 
T Consensus        93 -----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~-  153 (814)
T 3mkq_A           93 -----------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMCVAFNPKDP-  153 (814)
T ss_dssp             -----------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCSSCEEEEEEETTEE-
T ss_pred             -----------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCCCcEEEEEEEcCCC-
Confidence                       36799999999999999999999 9999999999865444433       467889999999999 77 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC--CCCEEEEEe-CCeEEEEeCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      ..|++++.||.|++||++++...    ..+..|            +...+..++|+|  ++.+|++++ ++.|++||+.+
T Consensus       154 ~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          154 STFASGCLDRTVKVWSLGQSTPN----FTLTTG------------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             EEEEEEETTSEEEEEETTCSSCS----EEEECC------------CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCCcce----eEEecC------------CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            89999999999999999876543    333331            246899999999  999999986 59999999987


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       +..+..+..|...+               ++++|+|++++|++++.||.|++||+.++ .....+..|...+..++++|
T Consensus       218 -~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          218 -KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             -TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECT
T ss_pred             -CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEcc
Confidence             78888888887654               69999999999999999999999999987 55788889999999999998


Q ss_pred             CCccccccccceeeecccceecCCCCCcc---------------------------------------------cccccc
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHH---------------------------------------------ELSYNL  458 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~---------------------------------------------~~~~~~  458 (487)
                      .....+     +++|..++..+|......                                             .....+
T Consensus       281 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (814)
T 3mkq_A          281 TGRKNY-----IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV  355 (814)
T ss_dssp             TCGGGE-----EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred             CCCceE-----EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence            533223     555554444555221100                                             001223


Q ss_pred             CCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          459 SSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       459 ~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                      ...+..++|+|+|++|++++++.+++|.
T Consensus       356 ~~~~~~~~~spdg~~la~~~~~~~~i~~  383 (814)
T 3mkq_A          356 DVFPQSLAHSPNGRFVTVVGDGEYVIYT  383 (814)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred             ccCCceeEECCCCCEEEEecCCEEEEEE
Confidence            4467899999999999999988899986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-37  Score=288.53  Aligned_cols=297  Identities=14%  Similarity=0.166  Sum_probs=235.8

Q ss_pred             cccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      +.+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+..                      .......+.+|.     
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~-----   86 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS-----   86 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-----
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-----
Confidence            3469999999999997 689999999999999999876542                      344567889999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|  ++++++|++++.|+.|++|+.........                                  
T Consensus        87 -------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~----------------------------------  123 (340)
T 4aow_A           87 -------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRR----------------------------------  123 (340)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred             -------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeee----------------------------------
Confidence                   89999999  68999999999999999999987765443                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   ...+...+..+.++++++.|+++ .|+.+++||+..... ...      ...+|...+.+++|++++
T Consensus       124 -------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-~~~------~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          124 -------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTV------QDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             -------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEE------CSSSCSSCEEEEEECSCS
T ss_pred             -------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-EEE------EeccccCcccceEEccCC
Confidence                         25667778899999999999999 999999999984332 221      356889999999998765


Q ss_pred             C-CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          266 C-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       266 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      . .++++++.|+.|++||+++++..    ..+.+             |...|.+++|+|++++|++|+ |+.|++||+++
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~----~~~~~-------------h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLK----TNHIG-------------HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEEcCCCEEEEEECCCCcee----eEecC-------------CCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            2 46789999999999999987654    45555             478999999999999999986 69999999987


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       .+++..+..+...                ..++|+|++.+ ++++.|+.|++||++++. ....+..+.          
T Consensus       247 -~~~~~~~~~~~~v----------------~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~-~~~~~~~~~----------  297 (340)
T 4aow_A          247 -GKHLYTLDGGDII----------------NALCFSPNRYW-LCAATGPSIKIWDLEGKI-IVDELKQEV----------  297 (340)
T ss_dssp             -TEEEEEEECSSCE----------------EEEEECSSSSE-EEEEETTEEEEEETTTTE-EEEEECCC-----------
T ss_pred             -CceeeeecCCceE----------------EeeecCCCCce-eeccCCCEEEEEECCCCe-EEEeccccc----------
Confidence             7778777765532                58999998765 556679999999998762 222222110          


Q ss_pred             CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                                                 .......|...|++++|+||+++||+|+.|+ ++||++
T Consensus       298 ---------------------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          298 ---------------------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             ---------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ---------------------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence                                       1112235677999999999999999999665 999973

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.1e-39  Score=307.68  Aligned_cols=297  Identities=15%  Similarity=0.156  Sum_probs=219.8

Q ss_pred             ccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..|...|+||+|+| ++++||+|+.||.|+|||+.+++..                         ....+.+|.      
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~------  164 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG------  164 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS------
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC------
Confidence            34778899999999 5679999999999999999876532                         345577898      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            +.|++|+|+| .++.+|++++.|++|++||+.++.......                                 
T Consensus       165 ------~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------------------------------  204 (435)
T 4e54_B          165 ------GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFAS---------------------------------  204 (435)
T ss_dssp             ------CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEEC---------------------------------
T ss_pred             ------CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEec---------------------------------
Confidence                  8999999954 367899999999999999998765433211                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  ...+...+.+++|+|++++|++| .|+.|++||++ +.. +       ..+.+|...|.+++|+|++.
T Consensus       205 ------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~-~-------~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          205 ------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKE-L-------WNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             ------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCB-C-------CCSBCCSSCEEEEEECTTCS
T ss_pred             ------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cce-e-------EEEecccceEEeeeecCCCc
Confidence                        13445568899999999999999 99999999997 332 1       35778999999999999985


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.|+.|++||+++.+..    ..+..          ..+|...|.+++|+|+|++|++++ |+.|++||+.+ +
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~----~~~~~----------~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~  328 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGK----ASFLY----------SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-W  328 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSS----SCCSB----------CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-S
T ss_pred             eEEEEecCcceeeEEeccccccc----ceEEE----------eeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-C
Confidence            68999999999999999886532    11111          234688999999999999999986 69999999987 6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc------------CCCcEEEEEeCCCCceeEEEeccC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      .....+..|.......      ..   .....|+|++.++++++            .++.|++||..+++.......+  
T Consensus       329 ~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--  397 (435)
T 4e54_B          329 DCPLGLIPHPHRHFQH------LT---PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--  397 (435)
T ss_dssp             SSEEEECCCCCCCCSS------SC---CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--
T ss_pred             ccceEEeccccccccc------ce---eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--
Confidence            6666665554321100      00   12455666665555543            3457999998887432211112  


Q ss_pred             CccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEE-EEcCCCCEEEEecCCeEEEEeC
Q 011368          414 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANGNSLFFHYA  487 (487)
Q Consensus       414 ~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~-~~spd~~~la~~s~~~~~i~~~  487 (487)
                                                                  |...|.++ +|||||++||+|+++.++||+.
T Consensus       398 --------------------------------------------~~~~v~s~~~fspdg~~lasg~d~~i~iW~~  428 (435)
T 4e54_B          398 --------------------------------------------ESSGISSLNEFNPMGDTLASAMGYHILIWSQ  428 (435)
T ss_dssp             --------------------------------------------SCCCCCCEEEECTTSSCEEEECSSEEEECCC
T ss_pred             --------------------------------------------CCCcEEEEEEECCCCCEEEEEcCCcEEEEEC
Confidence                                                        22345555 6899999999888888888863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-38  Score=294.29  Aligned_cols=322  Identities=13%  Similarity=0.114  Sum_probs=256.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |.++|.+++|+|||++++++..++.+.+|.....                           .......+|.         
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~h~---------   51 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH---------------------------ARQINTLNHG---------   51 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE---------------------------EEEEEEECCS---------
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCc---------------------------cccceeccCC---------
Confidence            4678999999999999998887776666543221                           1123334687         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         +.|.+++|  ++++++|++++ |+.|++||+.++......                                     
T Consensus        52 ---~~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~-------------------------------------   88 (337)
T 1gxr_A           52 ---EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPV-------------------------------------   88 (337)
T ss_dssp             ---SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCS-------------------------------------
T ss_pred             ---CceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceeee-------------------------------------
Confidence               89999999  57899999998 999999999876532110                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                           ......+|...|.+++|+|++++|+++ .|+.|++||++.......      ..+..|...|.+++|+|++ ++|
T Consensus        89 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------~~~~~~~~~i~~~~~~~~~-~~l  156 (337)
T 1gxr_A           89 -----SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK------AELTSSAPACYALAISPDS-KVC  156 (337)
T ss_dssp             -----EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE------EEEECSSSCEEEEEECTTS-SEE
T ss_pred             -----ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee------eecccCCCceEEEEECCCC-CEE
Confidence                 000013789999999999999999999 999999999985542221      1346788899999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      ++++.||.|++||+++++..    ..+..             |...+.+++|+|++++|++++ |+.|++||+++ ++.+
T Consensus       157 ~~~~~dg~v~~~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~  218 (337)
T 1gxr_A          157 FSCCSDGNIAVWDLHNQTLV----RQFQG-------------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQL  218 (337)
T ss_dssp             EEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEE
T ss_pred             EEEeCCCcEEEEeCCCCcee----eeeec-------------ccCceEEEEECCCCCEEEEEecCCcEEEEECCC-CceE
Confidence            99999999999999987644    44544             477899999999999999986 59999999987 6666


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  428 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  428 (487)
                      ..+... ..               +.+++|+|++++|++++.|+.|++||+.+++  ...+..|..++..+.++|  +++
T Consensus       219 ~~~~~~-~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~  278 (337)
T 1gxr_A          219 QQHDFT-SQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAY--CGK  278 (337)
T ss_dssp             EEEECS-SC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECT--TSS
T ss_pred             eeecCC-Cc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECC--CCC
Confidence            665432 22               2589999999999999999999999998774  457889999999999998  666


Q ss_pred             cccccceeeecccce-ecCCCCC-ccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          429 RSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       429 ~~~~~~l~~g~~~~~-~~w~~~~-~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                      .     +++++.++. ++|+... .......+...|.+++|+|++++|++++.|+ +++|+
T Consensus       279 ~-----l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          279 W-----FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             E-----EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             E-----EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            6     899999999 9995432 2223456889999999999999999988665 99996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.5e-38  Score=319.22  Aligned_cols=309  Identities=14%  Similarity=0.181  Sum_probs=235.8

Q ss_pred             cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|.+.|++++|+|++ ++|++|+.|++|+||++.+....                      .......+.+|.     
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~-----  430 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS-----  430 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-----
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-----
Confidence            45799999999999875 79999999999999998765431                      223456788999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|  ++++++|++|+.|++|++||+.++.....                                  
T Consensus       431 -------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~----------------------------------  467 (694)
T 3dm0_A          431 -------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRR----------------------------------  467 (694)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred             -------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeE----------------------------------
Confidence                   89999999  68899999999999999999998765433                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   +.+|...|.+++|+|++++|++| .|++|++||+. ......+    .....+|...|.+++|+|++
T Consensus       468 -------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~----~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          468 -------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTI----SEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             -------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE----CSSTTSCSSCEEEEEECSCS
T ss_pred             -------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceee----ccCCCCCCCcEEEEEEeCCC
Confidence                         37899999999999999999999 99999999987 3333322    12346788999999999985


Q ss_pred             -CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          266 -CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       266 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                       ...|++++.|+.|++||+++++..    ..+.+             |...|.+++|+|++++|++|+ |+.|++||+++
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~----~~~~~-------------h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLR----STLAG-------------HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEE----EEEcC-------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence             247999999999999999987643    44555             578999999999999999986 69999999987


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       ++.+..+..+..                +.+++|+|++.+|++++ ++.|+|||+.++ .....+..+...........
T Consensus       593 -~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          593 -GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             -TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECCCCC---------
T ss_pred             -CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcccccccccccccc
Confidence             777766654432                25899999998887765 456999999987 33444443322110000000


Q ss_pred             CCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          424 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       424 ~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                         +                        ......+.-.+++++|||||++|++|+.|+ ++||+.
T Consensus       654 ---~------------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          654 ---G------------------------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             ----------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ---c------------------------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence               0                        000011222578999999999999999665 889974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-38  Score=326.55  Aligned_cols=385  Identities=11%  Similarity=0.097  Sum_probs=264.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+| |++|++++.|++|+|||+.+++.                           +..+. |.       
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---------------------------~~~~~-~~-------   98 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---------------------------LTTVF-VP-------   98 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---------------------------EEEEE-CS-------
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---------------------------EEEEc-CC-------
Confidence            35778999999999 88999999999999999987653                           34443 54       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeee----------cCCCCceeeeeccccccccccccC
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE----------MDHFPFVSSENTLLAEKNFMNEHN  178 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                           +.|++++|  +|++++|++|+.||+|++||+.+++......          ......+.++.|.+.+...++.+.
T Consensus        99 -----~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           99 -----GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             -----SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             -----CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence                 77999999  6889999999999999999999877542211          223456788888886655555554


Q ss_pred             CCCcceeeeeeeec--cceeeeec-----------------ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce
Q 011368          179 PPSFAHGYHLEWTE--NMATKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  238 (487)
Q Consensus       179 ~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~  238 (487)
                      .+..    . .|+.  ..+.+.+.                 ..|...|++++|+|+|++|+++ .|+.|++||++++ ++
T Consensus       172 ~dg~----v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g-~~  245 (902)
T 2oaj_A          172 EYVT----L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG-HM  245 (902)
T ss_dssp             SSCE----E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC-CE
T ss_pred             CCCc----E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cE
Confidence            4432    2 4443  23333331                 2245789999999999999999 9999999999854 44


Q ss_pred             eEEeecCCCCCC-----------CCCCcEEEEEEec----CCCCEEEEEeCC-----CeEEEEEccC-------------
Q 011368          239 FNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAYSSSR-----GFVRLVDMRQ-------------  285 (487)
Q Consensus       239 ~~~~~~~~~~~~-----------~~~~~v~~v~~~p----~~~~~l~~~~~d-----g~i~iwd~~~-------------  285 (487)
                      +....+......           .|...|.+++|++    ++..++++|+.+     ..+.+|++..             
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            332111000000           2355789999964    332466666554     2677777320             


Q ss_pred             --------Cccc-----------------------------------cccceeecccccc--------------------
Q 011368          286 --------SALC-----------------------------------DHSARILRDAAES--------------------  302 (487)
Q Consensus       286 --------~~~~-----------------------------------~~~~~~~~~h~~~--------------------  302 (487)
                              .+..                                   ...++.+......                    
T Consensus       326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~  405 (902)
T 2oaj_A          326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT  405 (902)
T ss_dssp             HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred             hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence                    0000                                   0001111100000                    


Q ss_pred             -------------------cCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee--eeee--------
Q 011368          303 -------------------HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV--ATFK--------  352 (487)
Q Consensus       303 -------------------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~--~~~~--------  352 (487)
                                         ......+.+|...+..++|+|++++|++|+ |++|++||+.. +...  ..+.        
T Consensus       406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~  484 (902)
T 2oaj_A          406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLN  484 (902)
T ss_dssp             EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTT
T ss_pred             EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcC
Confidence                               000112345555666677789999999986 69999999986 3321  1111        


Q ss_pred             -cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC----------------------------
Q 011368          353 -IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS----------------------------  403 (487)
Q Consensus       353 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~----------------------------  403 (487)
                       +|..               .|++++|+|||++||+|+.||+|+||++.+++                            
T Consensus       485 ~~h~~---------------~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (902)
T 2oaj_A          485 KAKEL---------------AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV  549 (902)
T ss_dssp             CSSSC---------------CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred             CCCCC---------------ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence             2333               23699999999999999999999999998763                            


Q ss_pred             ----------------ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc-------ccc-cc
Q 011368          404 ----------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE-------LSY-NL  458 (487)
Q Consensus       404 ----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~-------~~~-~~  458 (487)
                                      .....+.+|.++|++++|+|  ++ +     |++|+.|+. ++|+......       ... +|
T Consensus       550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp--dG-~-----lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh  621 (902)
T 2oaj_A          550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN--IG-F-----VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ  621 (902)
T ss_dssp             EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB--TS-E-----EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred             cccccccCCCCCCCccceeEEEEcCCCcEEEEEecC--Cc-E-----EEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence                            12567889999999999998  66 7     999999999 9996543221       233 78


Q ss_pred             CCCeEEEEEc-----CCC---CEEEEecCCe-EEEEe
Q 011368          459 SSKLLHLAWH-----PTT---NLIACANGNS-LFFHY  486 (487)
Q Consensus       459 ~~~v~~~~~s-----pd~---~~la~~s~~~-~~i~~  486 (487)
                      ...|++|+|+     |||   .+|++|+.|+ +++|.
T Consensus       622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            8999999999     886   7999999665 99996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-38  Score=288.93  Aligned_cols=297  Identities=13%  Similarity=0.138  Sum_probs=220.8

Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                      ..+.+..+++|.            +.|.+++|+  ++  +|++++.|++|++||+..+.....                 
T Consensus         3 ~~~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~-----------------   49 (330)
T 2hes_X            3 SINLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLI-----------------   49 (330)
T ss_dssp             CCEEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEE-----------------
T ss_pred             ccccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEE-----------------
Confidence            345678899999            999999995  44  999999999999999987532211                 


Q ss_pred             ccccccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc---eeEEeec
Q 011368          170 EKNFMNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ---CFNIVDM  244 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~---~~~~~~~  244 (487)
                                                 ..+ ..+|...|++++|+|++++|++| .|++|++||+.....   ....   
T Consensus        50 ---------------------------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~---   99 (330)
T 2hes_X           50 ---------------------------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL---   99 (330)
T ss_dssp             ---------------------------EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEE---
T ss_pred             ---------------------------EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccccee---
Confidence                                       011 13499999999999999999999 999999999863211   0111   


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          245 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                       ...+.+|...|.+++|+|++ ++|++++.|+.|++||++...........+..             |...|.+++|+|+
T Consensus       100 -~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------h~~~v~~v~~~p~  164 (330)
T 2hes_X          100 -LAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQE-------------HSQDVKHVIWHPS  164 (330)
T ss_dssp             -EEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECC-------------CSSCEEEEEECSS
T ss_pred             -EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-------------CCCceEEEEECCC
Confidence             02357899999999999999 99999999999999999543211111233444             5789999999999


Q ss_pred             CCEEEEEe-CCeEEEEeCCCC-CceeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEEcCCCcEEEEEeC
Q 011368          325 GQHLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       325 ~~~l~s~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg~~dg~i~iwd~~  400 (487)
                      +.+|++++ |+.|++||.... ..++..+.+|...+               ++++|+|+  +.+|++|+.|++|++||+.
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV---------------WSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE---------------EEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE---------------EEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            99999986 699999998752 15677888888754               69999998  7789999999999999997


Q ss_pred             CCC-------ceeEEEec-cCCccccceEeeCCccccccccceeeecccce-ecCCCCCc----cc-cccccCC-CeEEE
Q 011368          401 VGS-------AGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HE-LSYNLSS-KLLHL  465 (487)
Q Consensus       401 ~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~----~~-~~~~~~~-~v~~~  465 (487)
                      ++.       .....+.. |...|.++++++  ++ .     +++++.|+. ++|+....    .. ....|.. .|..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~-~-----l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v  301 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NG-L-----IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV  301 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECT--TS-C-----EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcC--CC-E-----EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence            642       12334444 899999999985  23 4     899999999 99954321    11 2246776 89999


Q ss_pred             EEcC--CCCEEEEecCCe-EEEEeC
Q 011368          466 AWHP--TTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       466 ~~sp--d~~~la~~s~~~-~~i~~~  487 (487)
                      +|+|  ++++||+|+.|+ ++||+.
T Consensus       302 ~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          302 KWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             EEC-----CCEEEEETTSEEEEEEC
T ss_pred             EEecCCCceEEEEecCCCcEEEEEe
Confidence            9999  789999999665 899974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-38  Score=327.50  Aligned_cols=395  Identities=14%  Similarity=0.061  Sum_probs=257.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .+|.+.|++++|+|++++||+|+.||+|+||+..+.+.                           ... ..|.       
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~~-~~~~-------   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VIK-LEDR-------   58 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EEE-CSSC-------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EEE-cCCC-------
Confidence            45889999999999999999999999999999765432                           222 2355       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|+  + +++|++++.|++|++||+.+++......  ....+.++.+.+. +..++++..+....    
T Consensus        59 -----~~V~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~-g~~l~sgs~dg~V~----  123 (902)
T 2oaj_A           59 -----SAIKEMRFV--K-GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDAS-LDWMLIGLQNGSMI----  123 (902)
T ss_dssp             -----CCEEEEEEE--T-TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTT-CSEEEEEETTSCEE----
T ss_pred             -----CCEEEEEEc--C-CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCC-CCEEEEEcCCCcEE----
Confidence                 789999996  5 6799999999999999999887665543  3456777777654 44444444443332    


Q ss_pred             eeeccceee------------eecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCC--------
Q 011368          189 EWTENMATK------------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP--------  246 (487)
Q Consensus       189 ~~~~~~~~~------------~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~--------  246 (487)
                      .|+......            ..+.+|.+.|++++|+|+ +..+++| .|+.| +||+++ +.....+....        
T Consensus       124 lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~  201 (902)
T 2oaj_A          124 VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGD  201 (902)
T ss_dssp             EEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCST
T ss_pred             EEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcc
Confidence            233222110            123679999999999996 5788888 99999 999994 44444432110        


Q ss_pred             ---CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc-cceeecccccccCccccccccccceeEEEEc
Q 011368          247 ---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       247 ---~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                         .....|...|.+++|+|+| .+|++++.||.|++||+++++.+.. .......|............|...|.+++|+
T Consensus       202 ~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~  280 (902)
T 2oaj_A          202 FSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWM  280 (902)
T ss_dssp             TCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEE
T ss_pred             cccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEE
Confidence               0123456789999999999 9999999999999999998764321 0000111110000000000123456666663


Q ss_pred             ----CCC-CEEEEEe-C-----CeEEEEe---------------------------------------------------
Q 011368          323 ----NDG-QHLLSRD-Y-----MNLKLWD---------------------------------------------------  340 (487)
Q Consensus       323 ----~~~-~~l~s~~-d-----~~i~iwd---------------------------------------------------  340 (487)
                          |++ .+|++|+ +     ..+++|+                                                   
T Consensus       281 ~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g  360 (902)
T 2oaj_A          281 CENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG  360 (902)
T ss_dssp             ECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH
T ss_pred             ecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC
Confidence                332 3344442 1     1455555                                                   


Q ss_pred             --------------------CCCCCceeee-------eeccccccccc---------------------ccccCCCCcce
Q 011368          341 --------------------IRMDSTPVAT-------FKIHEHLRPKL---------------------CDLYNNDSIFD  372 (487)
Q Consensus       341 --------------------~~~~~~~~~~-------~~~~~~~~~~~---------------------~~~~~~~~~~~  372 (487)
                                          +.+ +.....       +..|...+..+                     ..+.  +....
T Consensus       361 ~~d~~~l~~~s~dg~l~~~~~~~-g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~--G~~~~  437 (902)
T 2oaj_A          361 CHNPGLILLILGNGEIETMLYPS-GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK--GGVRT  437 (902)
T ss_dssp             TBSCSEEEEEETTSCEEEEETTT-CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC--CSBCC
T ss_pred             CCCceeEEEEcCCCcEEEEECCC-CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc--CCcCC
Confidence                                321 111000       00000000000                     0000  00111


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce---eEEE--e-----ccCCccccceEeeCCccccccccceeeecccc
Q 011368          373 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITV--E-----AGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  442 (487)
Q Consensus       373 ~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~---~~~~--~-----~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~  442 (487)
                      +.+++|+|++++|++|+.|++|++||+.++...   ....  .     +|...|.+++|+|  +++.     |++|+.|+
T Consensus       438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp--dg~~-----LAsgs~Dg  510 (902)
T 2oaj_A          438 KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA--ETLE-----LAVSIETG  510 (902)
T ss_dssp             CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET--TTTE-----EEEEETTS
T ss_pred             CCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC--CCCe-----EEEEecCc
Confidence            235677899999999999999999999987421   1121  1     7899999999999  7777     99999999


Q ss_pred             e-ecCCCCCc-----------------------------------------------cccccccCCCeEEEEEcCCCCEE
Q 011368          443 A-HENSSSGH-----------------------------------------------HELSYNLSSKLLHLAWHPTTNLI  474 (487)
Q Consensus       443 ~-~~w~~~~~-----------------------------------------------~~~~~~~~~~v~~~~~spd~~~l  474 (487)
                      . ++|+....                                               ...+.+|.+.|++++||||| +|
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l  589 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV  589 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence            9 99943211                                               23345689999999999999 99


Q ss_pred             EEecCCe-EEEEeC
Q 011368          475 ACANGNS-LFFHYA  487 (487)
Q Consensus       475 a~~s~~~-~~i~~~  487 (487)
                      |+|+.|+ ++||.+
T Consensus       590 Asgs~D~tv~lwd~  603 (902)
T 2oaj_A          590 GIAYAAGSLMLIDR  603 (902)
T ss_dssp             EEEETTSEEEEEET
T ss_pred             EEEeCCCcEEEEEC
Confidence            9999776 899973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.2e-38  Score=288.73  Aligned_cols=242  Identities=18%  Similarity=0.274  Sum_probs=211.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|.+++|++++.++++|+.|++|++||+.+++.                           +..+..|.       
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~---------------------------~~~~~~~~-------  122 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ---------------------------IKSIDAGP-------  122 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCT-------
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE---------------------------EEEEeCCC-------
Confidence            46899999999999999999999999999999887654                           46677777       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..+.+++|  +|++++|++++.|+.|++|++..++....                                    
T Consensus       123 -----~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~------------------------------------  159 (321)
T 3ow8_A          123 -----VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS------------------------------------  159 (321)
T ss_dssp             -----TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE------------------------------------
T ss_pred             -----ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE------------------------------------
Confidence                 77899999  68999999999999999999998765433                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +..|...|.+++|+|++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ .
T Consensus       160 -----------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~l~~spd~-~  219 (321)
T 3ow8_A          160 -----------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLH-------TLEGHAMPIRSLTFSPDS-Q  219 (321)
T ss_dssp             -----------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE-------EECCCSSCCCEEEECTTS-C
T ss_pred             -----------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEE-------EEcccCCceeEEEEcCCC-C
Confidence                       25678889999999999999999 999999999984 44443       356899999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +|++++.|+.|++||+++++..    ..+.+             |...|.+++|+|++++|++++ |+.|++||+++ ++
T Consensus       220 ~l~s~s~dg~i~iwd~~~~~~~----~~~~~-------------h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~-~~  281 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDVQHANLA----GTLSG-------------HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-RT  281 (321)
T ss_dssp             EEEEECTTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TE
T ss_pred             EEEEEcCCCeEEEEECCCccee----EEEcC-------------CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CE
Confidence            9999999999999999987643    45555             578999999999999999986 59999999987 88


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      ++..+..|...+               ++++|+|++++|++++.||.|+|||..
T Consensus       282 ~~~~~~~h~~~v---------------~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          282 CVHTFFDHQDQV---------------WGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEEcCCCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            899998887754               699999999999999999999999963

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-37  Score=284.39  Aligned_cols=258  Identities=15%  Similarity=0.219  Sum_probs=201.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|+|++||+|+.|++|+||++.+..                         .+.+.++.+|.       
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~-------   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE-------   53 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCS-------
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEcccc-------
Confidence            3589999999999999999999999999999987542                         12357889999       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           +.|.+++|++..++.+|++++.|++|++||+.+++....                                    
T Consensus        54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------   92 (297)
T 2pm7_B           54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------   92 (297)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred             -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence                 999999996433488999999999999999987642211                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                              .. +.+|...|.+++|+|+  +.+|+++ .|+.|++||++.......      ..+.+|...|.+++|+|++
T Consensus        93 --------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           93 --------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------IIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             --------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------EEEECCSSCEEEEEECCCC
T ss_pred             --------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------eeeecccCccceEeecCCc
Confidence                    01 2679999999999997  8899999 999999999985432211      1246899999999999972


Q ss_pred             ------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEE
Q 011368          266 ------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLS  330 (487)
Q Consensus       266 ------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s  330 (487)
                                  ..+|++++.|+.|++||++++.........+.             +|...|.+++|+|++   .+|++
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-------------~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------------GHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-------------CCSSCEEEEEECCCCSSSEEEEE
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-------------CCCCceEEEEECCCCCCceEEEE
Confidence                        16999999999999999987652211123334             468899999999985   78998


Q ss_pred             Ee-CCeEEEEeCCCCCce--eeee--ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          331 RD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       331 ~~-d~~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++ |++|++||++.....  ...+  ..|...               +++++|+|+|++|++++.||.|+||+....
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            86 699999999752211  1222  223322               269999999999999999999999998743

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-38  Score=298.49  Aligned_cols=243  Identities=21%  Similarity=0.336  Sum_probs=211.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|++++|+|++++|++|+.|++|+|||+.+++.                           +..+.+|.      
T Consensus       146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~---------------------------~~~~~~h~------  192 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC---------------------------IRTMHGHD------  192 (410)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---------------------------EECCCCCS------
T ss_pred             EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------------eEEEcCCC------
Confidence            345899999999999999999999999999999876543                           57788998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++.+|++++.|++|++||+.++.....                                   
T Consensus       193 ------~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-----------------------------------  229 (410)
T 1vyh_C          193 ------HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKT-----------------------------------  229 (410)
T ss_dssp             ------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEE-----------------------------------
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------
Confidence                  88999999  57899999999999999999998875443                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC--
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--  264 (487)
                                  +.+|...|.++.++|++++|++| .|+.|++||+.+.. +..       .+.+|...|.+++|+|+  
T Consensus       230 ------------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~-------~~~~h~~~v~~~~~~~~~~  289 (410)
T 1vyh_C          230 ------------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKA-------ELREHRHVVECISWAPESS  289 (410)
T ss_dssp             ------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEE-------EECCCSSCEEEEEECCSCG
T ss_pred             ------------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eee-------EecCCCceEEEEEEcCccc
Confidence                        37899999999999999999999 99999999998543 333       24689999999999996  


Q ss_pred             ------------------CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368          265 ------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  326 (487)
Q Consensus       265 ------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~  326 (487)
                                        + .+|++|+.|+.|++||++++...    ..+.+             |...|.+++|+|+|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~~----~~~~~-------------h~~~v~~v~~~~~g~  351 (410)
T 1vyh_C          290 YSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCL----MTLVG-------------HDNWVRGVLFHSGGK  351 (410)
T ss_dssp             GGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEE----EEEEC-------------CSSCEEEEEECSSSS
T ss_pred             ccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCceE----EEEEC-------------CCCcEEEEEEcCCCC
Confidence                              4 68999999999999999988654    55555             478999999999999


Q ss_pred             EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          327 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       327 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +|++|+ |+.|++||+.+ ++++..+.+|...+               ++++|+|++.+|++|+.||+|++|+++
T Consensus       352 ~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          352 FILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEEeCCCeEEEEECCC-CceEEEEcCCCCcE---------------EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999986 59999999986 88888999888755               699999999999999999999999863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.5e-37  Score=287.59  Aligned_cols=329  Identities=13%  Similarity=0.129  Sum_probs=238.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |.++|++++|+|++++|++|+.|+.|++||+.+++                         .+....+.+|.         
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~---------   52 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN---------   52 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence            78899999999999999999999999999998763                         22467788898         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ..|.+++|+  +++++|++++.|+.|++||+.+++.....                                     
T Consensus        53 ---~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------------------   90 (372)
T 1k8k_C           53 ---GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTL-------------------------------------   90 (372)
T ss_dssp             ---SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEE-------------------------------------
T ss_pred             ---CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeE-------------------------------------
Confidence               899999995  68999999999999999999887643321                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                              .+..|...|.+++|+|++++|+++ .|+.|++||++.........    ....+|...|.+++|+|++ .+|
T Consensus        91 --------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~-~~l  157 (372)
T 1k8k_C           91 --------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTVLSLDWHPNS-VLL  157 (372)
T ss_dssp             --------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCEEEEEECTTS-SEE
T ss_pred             --------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----eeecccCCCeeEEEEcCCC-CEE
Confidence                    126788999999999999999999 99999999999654321111    1135688999999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeeccc-ccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      ++++.||.|++||++............... .........+.+|...|.+++|+|++++|++++ |+.|++||+++ +++
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~  236 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMA  236 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-TTE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-Cce
Confidence            999999999999976432110000000000 000011112345688999999999999999986 59999999987 788


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC--CCce-eEEEeccCCccccceEeeC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSAG-GITVEAGKNENRKPILQAA  424 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~--~~~~-~~~~~~~~~~v~~~~~~~~  424 (487)
                      +..+..|...+               .+++|+|++++|++| .|+.|++|++.+  +... ...+..+...         
T Consensus       237 ~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~---------  291 (372)
T 1k8k_C          237 VATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS---------  291 (372)
T ss_dssp             EEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------------
T ss_pred             eEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc---------
Confidence            88888887644               699999999988887 899999999987  4211 1111111100         


Q ss_pred             Cccccccccceeeecccce-ecC---CCC-Ccc------ccc-cccCCCeEEEEEc-CCC---CEEEEecCCe-EEEEe
Q 011368          425 PRARRSSLSNLTRGLYRQA-HEN---SSS-GHH------ELS-YNLSSKLLHLAWH-PTT---NLIACANGNS-LFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~-~~w---~~~-~~~------~~~-~~~~~~v~~~~~s-pd~---~~la~~s~~~-~~i~~  486 (487)
                                  ....... .+|   ... ...      ... .+|...|++++|+ ++|   ++|++++.|+ +++|+
T Consensus       292 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          292 ------------SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             -----------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ------------hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence                        0000111 222   111 111      222 3899999999977 666   9999999665 88996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=285.12  Aligned_cols=289  Identities=13%  Similarity=0.149  Sum_probs=229.0

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ....|.+.|++++|+|++++|++|+.||.|+|||+.+++.                           ...+.+|.     
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~h~-----   74 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------------LGTLDGHT-----   74 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------------EEEECCCS-----
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------------hhhhhhcC-----
Confidence            3566999999999999999999999999999999877654                           57788998     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|  ++++++|++++.|+.|++||+.+++....                                  
T Consensus        75 -------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------  111 (369)
T 3zwl_B           75 -------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVAT----------------------------------  111 (369)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE----------------------------------
T ss_pred             -------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------------------------
Confidence                   89999999  57899999999999999999998875543                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC-----CeEEEEEccCCCceeEEeec---CCCCCCCCCC--c
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDM---KPSNMDDLTE--V  255 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~--~  255 (487)
                                    ..+...|.+++|+|++++++++ .+     +.|++||+............   ....+..|..  .
T Consensus       112 --------------~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          112 --------------WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             --------------EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             --------------eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence                          2377889999999999999998 88     99999999865432211111   0112334555  8


Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368          256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      +.+++|+|++ .+|++++.||.|++||+++ ....    ..+..             |...|.+++|+|++++|++++ |
T Consensus       178 ~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          178 ATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DSIDL-------------HEKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             EEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EEEec-------------CCCceeEEEECCCCCEEEEecCC
Confidence            9999999999 9999999999999999998 3322    44444             468899999999999999986 5


Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC--------------cEEEEEe
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--------------LLRIFSH  399 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg--------------~i~iwd~  399 (487)
                      +.|++||+++ +..+..+..... +               ..++|+|+++++++++.++              .+++||+
T Consensus       240 ~~i~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          240 TNSFLVDVST-LQVLKKYETDCP-L---------------NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             SEEEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             ceEEEEECCC-CceeeeecCCCC-c---------------eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence            9999999987 777777763332 2               5899999999999999998              6777776


Q ss_pred             CCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368          400 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       400 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~  479 (487)
                      .+++. ...+                                              ..|...|.+++|+|++++|++++.
T Consensus       303 ~~~~~-~~~~----------------------------------------------~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          303 IFEEE-IGRV----------------------------------------------QGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             TTCCE-EEEE----------------------------------------------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCcc-hhhe----------------------------------------------ecccCcEEEEEECCCCCEEEEEcC
Confidence            65522 2222                                              234557788888888888888875


Q ss_pred             Ce-EEEEe
Q 011368          480 NS-LFFHY  486 (487)
Q Consensus       480 ~~-~~i~~  486 (487)
                      |+ +++|+
T Consensus       336 dg~v~iw~  343 (369)
T 3zwl_B          336 DGFIRLHH  343 (369)
T ss_dssp             TSEEEEEE
T ss_pred             CCeEEEEE
Confidence            54 77775

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.8e-37  Score=285.61  Aligned_cols=244  Identities=23%  Similarity=0.372  Sum_probs=207.9

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|.+++|+|++++|++|+.|+.|++|++.+.+.                       ..+....+.+|.        
T Consensus        95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~h~--------  143 (340)
T 1got_B           95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT--------  143 (340)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-----------------------SCEEEEEEECCS--------
T ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-----------------------cceeEEEecCCC--------
Confidence            4788899999999999999999999999999876542                       334567788998        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          +.|.+++|+  +++ .+++++.|++|++||+.+++....                                     
T Consensus       144 ----~~v~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~~~~~~-------------------------------------  179 (340)
T 1got_B          144 ----GYLSCCRFL--DDN-QIVTSSGDTTCALWDIETGQQTTT-------------------------------------  179 (340)
T ss_dssp             ----SCEEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred             ----ccEEEEEEC--CCC-cEEEEECCCcEEEEECCCCcEEEE-------------------------------------
Confidence                889999995  344 589999999999999998875443                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +.+|...|.+++|+|+++++++| .|+.|++||+++. .+..       .+.+|...|.+++|+|++ .+
T Consensus       180 ----------~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~-------~~~~h~~~v~~v~~~p~~-~~  240 (340)
T 1got_B          180 ----------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQ-------TFTGHESDINAICFFPNG-NA  240 (340)
T ss_dssp             ----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEE-------EECCCSSCEEEEEECTTS-SE
T ss_pred             ----------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEE-------EEcCCcCCEEEEEEcCCC-CE
Confidence                      37899999999999999999999 9999999999854 3433       357899999999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      |++++.||.|++||+++++..    ..+..           ..+...|.+++|+|+|++|++|+ |+.|++||+.+ ...
T Consensus       241 l~s~s~d~~v~iwd~~~~~~~----~~~~~-----------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~  304 (340)
T 1got_B          241 FATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK-ADR  304 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCE
T ss_pred             EEEEcCCCcEEEEECCCCcEE----EEEcc-----------CCcccceEEEEECCCCCEEEEECCCCeEEEEEccc-CcE
Confidence            999999999999999987643    33322           12235799999999999999986 59999999987 788


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      +..+.+|...+               ++++|+|+|++|++|+.||.|+|||
T Consensus       305 ~~~~~~h~~~v---------------~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          305 AGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeEeecCCCcE---------------EEEEEcCCCCEEEEEcCCccEEecC
Confidence            88899998765               6999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-36  Score=287.16  Aligned_cols=301  Identities=16%  Similarity=0.173  Sum_probs=227.2

Q ss_pred             cccccCcEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|.+.|++++|+|++ ++|++|+.||.|+|||+.+++..                         ....+.+|.     
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~-----  118 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG-----  118 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT-----
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC-----
Confidence            34688999999999999 99999999999999999876541                         222334687     


Q ss_pred             ccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                             ..|.+++|+  | ++.+|++++.|+.|++||+.+........                               
T Consensus       119 -------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------------------  158 (383)
T 3ei3_B          119 -------DAITGMKFN--QFNTNQLFVSSIRGATTLRDFSGSVIQVFAK-------------------------------  158 (383)
T ss_dssp             -------CBEEEEEEE--TTEEEEEEEEETTTEEEEEETTSCEEEEEEC-------------------------------
T ss_pred             -------CceeEEEeC--CCCCCEEEEEeCCCEEEEEECCCCceEEEec-------------------------------
Confidence                   899999995  5 67899999999999999998644332210                               


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                    ...|...|.+++|+|++++|+++ .|+.|++||++ +. ...       .+.+|...|.+++|+|+
T Consensus       159 --------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~-------~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          159 --------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIF-------KEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             --------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEE-------EEECSSSCEEEEEECSS
T ss_pred             --------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEE-------EeccCCCcEEEEEECCC
Confidence                          14566889999999999999999 99999999995 33 333       24678999999999999


Q ss_pred             CCC-EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeEEEEeC
Q 011368          265 YCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       265 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i~iwd~  341 (487)
                      + . +|++++.|+.|++||+++.+........+              +|...|.+++|+| ++++|++++ |+.|++||+
T Consensus       216 ~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          216 C-DWLMATSSVDATVKLWDLRNIKDKNSYIAEM--------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             C-TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred             C-CCEEEEEeCCCEEEEEeCCCCCcccceEEEe--------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence            9 6 99999999999999999843221111222              2478999999999 999999986 599999999


Q ss_pred             CCCCceeeeeecccccccc-----cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          342 RMDSTPVATFKIHEHLRPK-----LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      ++ ......+..|......     ...+....   .+..++|+|++++  +|+.||.|++||+.+++. ...+.+|.   
T Consensus       281 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-~~~l~~~~---  350 (383)
T 3ei3_B          281 YD-WSKPDQIIIHPHRQFQHLTPIKATWHPMY---DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL-VHQLRDPN---  350 (383)
T ss_dssp             TB-TTSCSEEEECCBCCCTTSCCCCCEECSSS---SEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-EEEECBTT---
T ss_pred             CC-CccccccccccccccccccceEEeccCCC---CceEEEecCCccc--ccCCCCeEEEEecCCCce-eeeecCCC---
Confidence            87 6666666655432110     00000011   1236788888887  888999999999988743 33333221   


Q ss_pred             ccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368          417 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  487 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~  487 (487)
                                                               +...+..++|+|++++||+++++.++||+.
T Consensus       351 -----------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          351 -----------------------------------------AAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             -----------------------------------------BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             -----------------------------------------CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence                                                     223556779999999999999778999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-36  Score=280.13  Aligned_cols=250  Identities=18%  Similarity=0.243  Sum_probs=204.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+|++++|++|+.|++|+|||+.+++.                           ...+.+|.       
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~---------------------------~~~~~~h~-------  107 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET---------------------------YQRFVGHK-------  107 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe---------------------------eEEEccCC-------
Confidence            46899999999999999999999999999999987754                           57788998       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  ++++.+|++++.|++|++||+.......                                     
T Consensus       108 -----~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~~~~-------------------------------------  143 (319)
T 3frx_A          108 -----SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQCLAT-------------------------------------  143 (319)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCEEEE-------------------------------------
T ss_pred             -----CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEE-------------------------------------
Confidence                 89999999  5789999999999999999997543322                                     


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC------CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                 +.+|...|.+++|.|+      +..|+++ .|+.|++||++.. ....       .+.+|...|.+++|
T Consensus       144 -----------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~-------~~~~h~~~v~~~~~  204 (319)
T 3frx_A          144 -----------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEA-------DFIGHNSNINTLTA  204 (319)
T ss_dssp             -----------ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEE-------EECCCCSCEEEEEE
T ss_pred             -----------EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhhe-------eecCCCCcEEEEEE
Confidence                       2689999999999985      4488998 9999999999843 3332       35689999999999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368          262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  341 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~  341 (487)
                      +|++ .+|++++.||.|++||+++++..    ..+..              ...|.+++|+|++.+|+++.++.+++|++
T Consensus       205 sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~la~~~~~~i~v~~~  265 (319)
T 3frx_A          205 SPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRYWLAAATATGIKVFSL  265 (319)
T ss_dssp             CTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred             cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence            9999 99999999999999999987654    44444              35799999999999999998888999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .. ...+..+..+......    .   ....+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       266 ~~-~~~~~~~~~~~~~~~~----~---~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          266 DP-QYLVDDLRPEFAGYSK----A---AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TT-EEEEEEECCCCTTCCG----G---GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             Cc-CeeeeccCcccccccc----C---cCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            75 5555555432211000    0   0012358999999999999999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.2e-37  Score=287.60  Aligned_cols=252  Identities=18%  Similarity=0.242  Sum_probs=196.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|++++|+|++++| +++.||+|+|||+.+++..                       ........+|.      
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------  139 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------  139 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS------
T ss_pred             cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC------
Confidence            35688899999999998655 5678999999999877542                       11123455787      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++++|++++.|++|++||+.+++....                                   
T Consensus       140 ------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~~~-----------------------------------  176 (357)
T 4g56_B          140 ------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVLKS-----------------------------------  176 (357)
T ss_dssp             ------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEEEE-----------------------------------
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------
Confidence                  89999999  67899999999999999999998875543                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  +.+|...|++++|+|++. +++++ .|+.|++||++++.....      .....+...+.+++|+|++
T Consensus       177 ------------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------~~~~~~~~~v~~v~~sp~~  238 (357)
T 4g56_B          177 ------------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR------IDFCASDTIPTSVTWHPEK  238 (357)
T ss_dssp             ------------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB------CCCTTCCSCEEEEEECTTS
T ss_pred             ------------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee------eeeccccccccchhhhhcc
Confidence                        378999999999999875 67787 999999999985543221      2345677889999999986


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~  343 (487)
                      ..+|++|+.|+.|++||+++++..    +.+..             |...|++++|+|++ ++|++|+ |++|+|||+++
T Consensus       239 ~~~la~g~~d~~i~~wd~~~~~~~----~~~~~-------------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          239 DDTFACGDETGNVSLVNIKNPDSA----QTSAV-------------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             TTEEEEEESSSCEEEEESSCGGGC----EEECC-------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             cceEEEeecccceeEEECCCCcEe----EEEec-------------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            578999999999999999987654    55555             47899999999987 5788876 69999999986


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                       ++.+..+ +|...+               ++++|+| |+++|++|+.||+|++|++.+...
T Consensus       302 -~~~~~~~-~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          302 -SEVFRDL-SHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             -CEEEEEC-CCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             -CcEeEEC-CCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence             6665544 676644               6999998 899999999999999999976533

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-37  Score=284.44  Aligned_cols=258  Identities=15%  Similarity=0.204  Sum_probs=199.6

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|+|++||+|+.|++|+|||+.+++.                         ..+..+.+|.       
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~-------   57 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE-------   57 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence            35899999999999999999999999999999987632                         2357789999       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           +.|.+++|+|..++.+|++++.|++|++||+.+++....                                    
T Consensus        58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------   96 (316)
T 3bg1_A           58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------------------------------   96 (316)
T ss_dssp             -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE------------------------------------
T ss_pred             -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE------------------------------------
Confidence                 899999996423578999999999999999987642221                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                              .. +.+|...|++++|+|+  +.+|++| .|+.|++||++..... ..    ...+.+|...|.+++|+|+.
T Consensus        97 --------~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-~~----~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           97 --------HE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-EV----KKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             --------EE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-EE----CCBTTSSSSCBCCCEECCCC
T ss_pred             --------EE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-ce----eeeeccccCCcceEEEcccc
Confidence                    11 3689999999999997  7899999 9999999999854322 11    12457889999999999972


Q ss_pred             ----------------CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----
Q 011368          266 ----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----  325 (487)
Q Consensus       266 ----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----  325 (487)
                                      ..+|++++.|+.|++||++..... .....+             .+|...|.+++|+|++    
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~l-------------~~h~~~V~~v~~sp~~~~~~  228 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQKL-------------EAHSDWVRDVAWAPSIGLPT  228 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEECC-------------BCCSSCEEEEECCCCSSCSC
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeeec-------------ccCCCceEEEEecCCCCCCC
Confidence                            168999999999999999754211 011233             3468899999999986    


Q ss_pred             CEEEEEe-CCeEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          326 QHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       326 ~~l~s~~-d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      .+|++++ |++|++|++....   .....+..|...+               ++++|+|++++|++++.|+.|+||+...
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            7899886 6999999987521   1223344454432               6999999999999999999999999874


Q ss_pred             C
Q 011368          402 G  402 (487)
Q Consensus       402 ~  402 (487)
                      .
T Consensus       294 ~  294 (316)
T 3bg1_A          294 D  294 (316)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.3e-37  Score=331.88  Aligned_cols=368  Identities=15%  Similarity=0.201  Sum_probs=278.5

Q ss_pred             ccccCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        29 ~~h~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..|...|.+++|+|  ++.++++|+.||.|++||+.+++.                           ...+.+|.     
T Consensus       696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---------------------------~~~~~~h~-----  743 (1249)
T 3sfz_A          696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---------------------------RNTMFGHT-----  743 (1249)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---------------------------EEEECCCS-----
T ss_pred             cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---------------------------hheecCCC-----
Confidence            35889999999999  556899999999999999887754                           57788998     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCC------------CCceeeeecccccccc-
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH------------FPFVSSENTLLAEKNF-  173 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-  173 (487)
                             +.|.+++|  +|++.+|++++.|+.|++||+.+++.........            ...+.++.+.+....+ 
T Consensus       744 -------~~v~~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          744 -------NSVNHCRF--SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             -------SCEEEEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             -------CCEEEEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence                   89999999  5789999999999999999998876544322110            1122233332222111 


Q ss_pred             ----------------------------------------ccccCCCCcceeeeeeeecc--ceeeeecccCCCceeEEE
Q 011368          174 ----------------------------------------MNEHNPPSFAHGYHLEWTEN--MATKVYPHAHDFNINSIS  211 (487)
Q Consensus       174 ----------------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~  211 (487)
                                                              ++.+.....    ...|+..  ..... +.+|...|.+++
T Consensus       815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~----v~vwd~~~~~~~~~-~~~h~~~v~~v~  889 (1249)
T 3sfz_A          815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC----VELWNIDSRLKVAD-CRGHLSWVHGVM  889 (1249)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC----EEEEETTTTEEEEE-ECCCSSCEEEEE
T ss_pred             EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe----EEEEEcCCCceeee-cCCCccceEEEE
Confidence                                                    111111111    1124432  23333 378999999999


Q ss_pred             eCCCCCEEEEe-cCCeEEEEEccCCC------------------------------------------------------
Q 011368          212 NNSDCETFVSA-DDLRINLWNLEISD------------------------------------------------------  236 (487)
Q Consensus       212 ~s~~~~~l~s~-~d~~i~iwd~~~~~------------------------------------------------------  236 (487)
                      |+|+++.|+++ .|+.|++|++....                                                      
T Consensus       890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  969 (1249)
T 3sfz_A          890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL  969 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence            99999999999 99999999965210                                                      


Q ss_pred             -------------ceeEEeecCC----CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccc
Q 011368          237 -------------QCFNIVDMKP----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  299 (487)
Q Consensus       237 -------------~~~~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h  299 (487)
                                   ..+.+++...    ..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++..     ...  
T Consensus       970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~~-- 1041 (1249)
T 3sfz_A          970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV-----FLQ-- 1041 (1249)
T ss_dssp             CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE-----CCB--
T ss_pred             cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE-----EEe--
Confidence                         0011111111    1345788899999999999 99999999999999999987643     122  


Q ss_pred             ccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368          300 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  379 (487)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  379 (487)
                                 .|...|.++.|+|++.+++.+.|+.|++||+.+ ++.+..+.+|...+               ++++|+
T Consensus      1042 -----------~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~s 1094 (1249)
T 3sfz_A         1042 -----------AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQGTV---------------LSCAIS 1094 (1249)
T ss_dssp             -----------CCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSSCC---------------CCEEEC
T ss_pred             -----------cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCCcE---------------EEEEEC
Confidence                       347899999999988766556679999999987 88888888888754               589999


Q ss_pred             CCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC--CCccccc-
Q 011368          380 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS-  455 (487)
Q Consensus       380 ~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~-  455 (487)
                      |++++|++++.||.|++||+.+++ ....+.+|...+.+++|+|  ++++     +++|+.|+. ++|+.  ++..... 
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~-~~~~l~~h~~~v~~~~~s~--dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSL--DGIL-----LATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSS-CSBCCCCCSSCEEEEEECS--SSSE-----EEEEETTSCCCEEESSSSCCCCCCC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcc-eeeeeccCCCcEEEEEECC--CCCE-----EEEEeCCCEEEEEECCCCceEEEec
Confidence            999999999999999999999874 5778889999999999998  6777     999999999 99943  3333332 


Q ss_pred             --------cccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          456 --------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       456 --------~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                              ..|...|++++|+||+++|++++ +.+++|+
T Consensus      1167 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A         1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp             CCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred             cccccccccccCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence                    46888999999999999999887 6799996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7e-36  Score=280.90  Aligned_cols=304  Identities=13%  Similarity=0.187  Sum_probs=225.8

Q ss_pred             cccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec--CCCcc
Q 011368           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPE  103 (487)
Q Consensus        30 ~h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~  103 (487)
                      .|.++|++++|+|+    ...+++++.++.|++|++.+++..                        +.+..+.  .|.  
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------------------~~~~~~~~~~~~--   69 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------------------RLLQSYVDADAD--   69 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------------------EEEEEEECSCTT--
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------------------EeeeeccccCCC--
Confidence            48999999999984    456666777789999999876531                        1111111  244  


Q ss_pred             cccccccccccceeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                                ..|.+++|+|..+  +.+|++++.|+.|++||+.+++....                             
T Consensus        70 ----------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-----------------------------  110 (366)
T 3k26_A           70 ----------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-----------------------------  110 (366)
T ss_dssp             ----------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-----------------------------
T ss_pred             ----------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-----------------------------
Confidence                      7899999976433  67999999999999999998765543                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                                        +.+|...|.+++|+| ++++|+++ .|+.|++||++++ .....+    ..+.+|...|.++
T Consensus       111 ------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~----~~~~~~~~~v~~~  167 (366)
T 3k26_A          111 ------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF----GGVEGHRDEVLSA  167 (366)
T ss_dssp             ------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEEEE----CSTTSCSSCEEEE
T ss_pred             ------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEEEe----cccccccCceeEE
Confidence                              368999999999999 89999999 9999999999854 444332    2236799999999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccc----cc-----------ccCccccccccccceeEEEEcCC
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA----AE-----------SHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h----~~-----------~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                      +|+|++ .+|++++.||.|++||+++++..    ..+..+    ..           ..........|...|.+++|+  
T Consensus       168 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          168 DYDLLG-EKIMSCGMDHSLKLWRINSKRMM----NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEESCSHHHH----HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             EECCCC-CEEEEecCCCCEEEEECCCCccc----cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            999999 99999999999999999987543    111110    00           000011123478999999999  


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCCc-------------eeeeeecccccccccccccCCCCcceeeEEEEcCC--CCEEEEE
Q 011368          325 GQHLLSRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATG  388 (487)
Q Consensus       325 ~~~l~s~~-d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~sg  388 (487)
                      +++|++++ |+.|++||+++...             .+..+..|...+               ++++|+|+  +++|++|
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~~l~~~  305 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDFWQKMLALG  305 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECTTSSEEEEE
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCCCCcEEEEE
Confidence            67888885 69999999986322             244455554433               58899999  9999999


Q ss_pred             cCCCcEEEEEeCCCCcee---EEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEE
Q 011368          389 SYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL  465 (487)
Q Consensus       389 ~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~  465 (487)
                      +.||.|++||+.+++...   ..+.+                                            ..+...|.++
T Consensus       306 ~~dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~v~~~  341 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDPHKAKCTTLTH--------------------------------------------HKCGAAIRQT  341 (366)
T ss_dssp             CTTSCEEEEECCSSSGGGCEEEEECC--------------------------------------------TTCCSCEEEE
T ss_pred             ecCCcEEEEECCCCCCccccceEEcc--------------------------------------------cccCCceEEE
Confidence            999999999998874311   01111                                            1225689999


Q ss_pred             EEcCCCCEEEEecCC-eEEEEeC
Q 011368          466 AWHPTTNLIACANGN-SLFFHYA  487 (487)
Q Consensus       466 ~~spd~~~la~~s~~-~~~i~~~  487 (487)
                      +|+|++++|++++.| .+++|+.
T Consensus       342 ~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          342 SFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC
T ss_pred             EeCCCCCeEEEEeCCCEEEEEEe
Confidence            999999999999866 4899974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.8e-36  Score=284.87  Aligned_cols=317  Identities=10%  Similarity=0.102  Sum_probs=232.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|  ++|++|+.||.|+||++.+++..                     ...+....+.+|.       
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~-------   62 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK-------   62 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT-------
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC-------
Confidence            35899999999999  79999999999999999877521                     1233457778898       


Q ss_pred             ccccccceeEEEEEec--CCC---cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          109 SLEIEEKINRVRWCAA--PNG---SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~--~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                           ..|.+++|+|.  .++   .+|++++.|+.|++||+.+++....                               
T Consensus        63 -----~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------------------------  106 (397)
T 1sq9_A           63 -----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK-------------------------------  106 (397)
T ss_dssp             -----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC-------------------------------
T ss_pred             -----CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc-------------------------------
Confidence                 89999999642  127   8999999999999999988763000                               


Q ss_pred             eeeeeeeeccceeeeecccC-----CCceeEEEeC----CCCCE-EEEe-cCCeEEEEEccC------CCcee----EEe
Q 011368          184 HGYHLEWTENMATKVYPHAH-----DFNINSISNN----SDCET-FVSA-DDLRINLWNLEI------SDQCF----NIV  242 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~s----~~~~~-l~s~-~d~~i~iwd~~~------~~~~~----~~~  242 (487)
                                ..... +..|     ...|.+++|+    |+++. |+++ .|+.|++||+..      .....    ..+
T Consensus       107 ----------~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (397)
T 1sq9_A          107 ----------VIFEK-LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL  175 (397)
T ss_dssp             ----------EEEEE-ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred             ----------cccee-ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence                      00001 2556     5899999999    99999 9999 999999999985      33221    011


Q ss_pred             ecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc---ccceeEE
Q 011368          243 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI---IASISDI  319 (487)
Q Consensus       243 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---~~~v~~v  319 (487)
                      .........|...|.+++|+|++  +|++++.||.|++||+++++..    ..+..          ..+|   ...|.++
T Consensus       176 ~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~----~~~~~----------~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          176 QGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES----------QHSMINNSNSIRSV  239 (397)
T ss_dssp             EEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC----------CC---CCCCCEEEE
T ss_pred             eeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee----EEEec----------cccccccCCccceE
Confidence            00000114578889999999997  9999999999999999987643    33333          0124   6789999


Q ss_pred             EEcCCCCEEEEE-eC---CeEEEEeCCCCCceeeeeec-------------ccccccccccccCCCCcceeeEEEEcCCC
Q 011368          320 KFANDGQHLLSR-DY---MNLKLWDIRMDSTPVATFKI-------------HEHLRPKLCDLYNNDSIFDKFECSVSGDG  382 (487)
Q Consensus       320 ~~s~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  382 (487)
                      +|+|++++|+++ .|   +.|++||+++ ++.+..+..             |...+               ++++|+|++
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~  303 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV---------------MSLSFNDSG  303 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE---------------EEEEECSSS
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE---------------EEEEECCCC
Confidence            999999999987 46   8999999987 788888877             55543               699999999


Q ss_pred             CEEEEEcCCCcEEEEEeCCCCceeEEEe------ccCCccccceEeeCCccccccccceeeecccceecCCCCCcccccc
Q 011368          383 LHFATGSYSNLLRIFSHGVGSAGGITVE------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY  456 (487)
Q Consensus       383 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~  456 (487)
                      ++|++++.||.|++||+.++ .....+.      +|...        ...+                       ......
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~--------~~~g-----------------------~~~~~~  351 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEED--------ILAV-----------------------DEHGDS  351 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGG--------CCCB-----------------------CTTSCB
T ss_pred             CEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhh--------hhcc-----------------------cccccc
Confidence            99999999999999999887 3455555      33110        0000                       000112


Q ss_pred             ccCCCeEEEEEcCCC----------CEEEEecCC-eEEEEe
Q 011368          457 NLSSKLLHLAWHPTT----------NLIACANGN-SLFFHY  486 (487)
Q Consensus       457 ~~~~~v~~~~~spd~----------~~la~~s~~-~~~i~~  486 (487)
                      .|...|.+++|+|++          ++|++++.| .+++|+
T Consensus       352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            357799999999998          789988855 588986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-35  Score=286.38  Aligned_cols=307  Identities=13%  Similarity=0.210  Sum_probs=249.6

Q ss_pred             cccccCcE-EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V-~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|.+.| +|++  ++|++|++|+.||.|++||+.+++.                           ...+.+|.     
T Consensus       114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~---------------------------~~~~~~h~-----  159 (445)
T 2ovr_B          114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHT-----  159 (445)
T ss_dssp             EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCS-----
T ss_pred             ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcE---------------------------EEEEcCCC-----
Confidence            44687764 5554  5689999999999999999887654                           57788998     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|.+++|+    +.++++++.|++|++||+.+++....                                  
T Consensus       160 -------~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~----------------------------------  194 (445)
T 2ovr_B          160 -------GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT----------------------------------  194 (445)
T ss_dssp             -------SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred             -------CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE----------------------------------
Confidence                   899999994    56999999999999999998865543                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   +.+|...|.+++|+  ++.+++| .|+.|++||+.++. ....       +.+|...|.+++|  ++
T Consensus       195 -------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~-------~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          195 -------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHV-------LMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             -------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEE-------EECCSSCEEEEEE--CS
T ss_pred             -------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEE-------EcCCcccEEEEEE--CC
Confidence                         37899999999995  5788898 99999999999544 4332       4678999999999  56


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       .++++++.||.|++||+++++..    ..+..             |...|.++.|  ++.++++++ |+.|++||+++ 
T Consensus       250 -~~l~~~~~dg~i~iwd~~~~~~~----~~~~~-------------~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-  308 (445)
T 2ovr_B          250 -RRVVSGAYDFMVKVWDPETETCL----HTLQG-------------HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-  308 (445)
T ss_dssp             -SCEEEEETTSCEEEEEGGGTEEE----EEECC-------------CSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-
T ss_pred             -CEEEEEcCCCEEEEEECCCCcEe----EEecC-------------CCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-
Confidence             88999999999999999987654    45555             4778999999  788999886 69999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec---cCCccccceE
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GKNENRKPIL  421 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~  421 (487)
                      ++.+..+..|...+               .++.+  ++++|++|+.||.|++||+.++ .....+..   |..++.++.+
T Consensus       309 ~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          309 GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEE
T ss_pred             CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCCCCEEEEEE
Confidence            88888888887643               34444  6779999999999999999887 44667776   7888888888


Q ss_pred             eeCCccccccccceeeecccce-ecCCC--CCccccc-----cccCCCeEEEEEcCCCCEEEEecCCe-----EEEEe
Q 011368          422 QAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS-----LFFHY  486 (487)
Q Consensus       422 ~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~-----~~~~~~v~~~~~spd~~~la~~s~~~-----~~i~~  486 (487)
                      .+    .+     +++|+.|+. ++|+.  ++.....     ..+...|.+++|+|++.+||+|+.|+     +++|+
T Consensus       371 ~~----~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          371 NK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             CS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             CC----CE-----EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            53    44     899999999 99943  4444433     36788999999999999999999777     77875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-36  Score=285.24  Aligned_cols=258  Identities=16%  Similarity=0.248  Sum_probs=203.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..|++++|+|+|++||+|+.|+.|+|||+.+++.                           ...+.+|.           
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~~h~-----------  165 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI---------------------------VMILQGHE-----------  165 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-----------
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------------EEEEccCC-----------
Confidence            3599999999999999999999999999876643                           57789998           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       ..|.+++|  +|++.+|++++.|++|++||+.+++....                                        
T Consensus       166 -~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~----------------------------------------  202 (393)
T 1erj_A          166 -QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLT----------------------------------------  202 (393)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------------
T ss_pred             -CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEE----------------------------------------
Confidence             88999999  57899999999999999999998765433                                        


Q ss_pred             cceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                              ..+...+.+++|+| ++++|++| .|+.|++||++++ .....+........+|...|.+++|+|++ .+|+
T Consensus       203 --------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~  272 (393)
T 1erj_A          203 --------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVV  272 (393)
T ss_dssp             --------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTS-SEEE
T ss_pred             --------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCC-CEEE
Confidence                    24566799999999 89999999 9999999999854 44443322222346799999999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      +++.|+.|++||+++.....    .... .........+.+|...|.+++|+|++++|++|+ |+.|++||+++ ++++.
T Consensus       273 s~s~d~~v~~wd~~~~~~~~----~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~  346 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLL  346 (393)
T ss_dssp             EEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEE
T ss_pred             EEeCCCEEEEEECCCCCCcc----cccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEE
Confidence            99999999999998754221    0000 000111123456788999999999999999986 59999999987 88889


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcC------CCCEEEEEcCCCcEEEEEeCCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .+.+|...+               .+++|++      ++++|++|+.||+|+||++...
T Consensus       347 ~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          347 MLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999998754               5888876      6889999999999999998743

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-35  Score=275.10  Aligned_cols=285  Identities=13%  Similarity=0.162  Sum_probs=230.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|++++|+|++++|++++ ||.|++|++.+++..                      .........+|.      
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~------   97 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD------   97 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT------
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce----------------------eeeecccccCCC------
Confidence            456899999999999999999998 999999999876532                      111112223666      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++++|++++.|+.|++||+.+++.....                                  
T Consensus        98 ------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----------------------------------  135 (337)
T 1gxr_A           98 ------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKA----------------------------------  135 (337)
T ss_dssp             ------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEE----------------------------------
T ss_pred             ------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceee----------------------------------
Confidence                  88999999  578999999999999999999887532211                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                 .+..|...|.+++|+|++++++++ .|+.|++||+++. .....       +..|...|.+++|+|++ 
T Consensus       136 -----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~-------~~~~~~~i~~~~~~~~~-  195 (337)
T 1gxr_A          136 -----------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQ-------FQGHTDGASCIDISNDG-  195 (337)
T ss_dssp             -----------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE-------ECCCSSCEEEEEECTTS-
T ss_pred             -----------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeee-------eecccCceEEEEECCCC-
Confidence                       136788999999999999999999 9999999999844 34332       46788999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.||.|++||+++++..    ..+..              ...+.+++|+|++++|++++ ++.|++||++. .
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~-~  256 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREGRQL----QQHDF--------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-P  256 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-S
T ss_pred             CEEEEEecCCcEEEEECCCCceE----eeecC--------------CCceEEEEECCCCCEEEEEcCCCcEEEEECCC-C
Confidence            99999999999999999987643    33322              56899999999999999986 59999999986 4


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      . ...+..|...+               .+++|+|++++|++++.||.|++||+.+++..  ....|...+..+.++|  
T Consensus       257 ~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~--  316 (337)
T 1gxr_A          257 D-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISV--  316 (337)
T ss_dssp             C-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECT--
T ss_pred             C-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECC--
Confidence            3 34555565543               69999999999999999999999999987543  4456888899999998  


Q ss_pred             ccccccccceeeecccce-ecCC
Q 011368          426 RARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      +++.     +++++.|+. ++|+
T Consensus       317 ~~~~-----l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          317 DDKY-----IVTGSGDKKATVYE  334 (337)
T ss_dssp             TSCE-----EEEEETTSCEEEEE
T ss_pred             CCCE-----EEEecCCCeEEEEE
Confidence            5666     899999998 8884

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=279.33  Aligned_cols=269  Identities=16%  Similarity=0.198  Sum_probs=202.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|+|++||+|+.|++|+||+..++.                         .+....+.+|.       
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~-------  105 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------------------------FECVTTLEGHE-------  105 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------------EEEEEEECCCS-------
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------------eEEEEEccCCC-------
Confidence            3589999999999999999999999999999987652                         34567889999       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++++|++++.|++|++||+..+.....                                    
T Consensus       106 -----~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------------------------------------  142 (345)
T 3fm0_A          106 -----NEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYEC------------------------------------  142 (345)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEE------------------------------------
T ss_pred             -----CCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEE------------------------------------
Confidence                 89999999  57899999999999999999987542211                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                             ... +.+|...|.+++|+|++++|+++ .|+.|++||.+.... ...     ..+.+|...|.+++|+|++ +
T Consensus       143 -------~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-~~~-----~~~~~h~~~v~~l~~sp~g-~  207 (345)
T 3fm0_A          143 -------VSV-LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-VCC-----ATLEGHESTVWSLAFDPSG-Q  207 (345)
T ss_dssp             -------EEE-ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE-EEE-----EEECCCSSCEEEEEECTTS-S
T ss_pred             -------EEE-ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE-EEE-----EEecCCCCceEEEEECCCC-C
Confidence                   111 37899999999999999999999 999999999984432 111     2357899999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCcccccc-ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      +|++++.|+.|++||.......... ..... .........+. .|...|.+++|+|++..|++++ |+.|++|+.....
T Consensus       208 ~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          208 RLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            9999999999999997543211000 00000 00000001112 2678999999999999999875 6999999986521


Q ss_pred             c---eee-----eeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCc
Q 011368          346 T---PVA-----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       346 ~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      .   +..     ...+|...+               ++++|+|++ .+||+|+.||+|++|++.+++.
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             CcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            1   111     123454433               699999987 5999999999999999988744

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.2e-36  Score=272.42  Aligned_cols=246  Identities=15%  Similarity=0.169  Sum_probs=204.7

Q ss_pred             eEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      ...++.+|.            +.|.+++|  +|++.+|++++.|++|++||+.++.....                    
T Consensus         5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~--------------------   50 (304)
T 2ynn_A            5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRS--------------------   50 (304)
T ss_dssp             CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred             eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence            457788998            89999999  57899999999999999999998765443                    


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                                                 +..|...|.+++|+|++++|++| .|++|++||+.++.. ..       .+.+
T Consensus        51 ---------------------------~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~-------~~~~   95 (304)
T 2ynn_A           51 ---------------------------IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-VV-------DFEA   95 (304)
T ss_dssp             ---------------------------EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-EE-------EEEC
T ss_pred             ---------------------------eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-EE-------EEeC
Confidence                                       36788999999999999999999 999999999995543 32       3568


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEE
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS  330 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s  330 (487)
                      |...|.+++|+|++ .+|++++.|+.|++||++++..+   ...+.+             |...|.+++|+| ++.+|++
T Consensus        96 h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~~~~-------------h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           96 HPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQTFEG-------------HEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEEECC-------------CCSCEEEEEECTTCTTEEEE
T ss_pred             CCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhhhcc-------------cCCcEEEEEECCCCCCEEEE
Confidence            99999999999999 99999999999999999876422   134444             578999999999 6788998


Q ss_pred             Ee-CCeEEEEeCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEcC--CCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          331 RD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       331 ~~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      |+ |+.|++||++. ..+...+. .+...+               ..++|+|  ++++|++|+.|+.|++||++++ ...
T Consensus       159 gs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~  221 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCV  221 (304)
T ss_dssp             EETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEE
T ss_pred             EeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccc
Confidence            86 69999999986 44444443 333322               4778876  7889999999999999999987 568


Q ss_pred             EEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          407 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       407 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      ..+.+|...+..++|+|  ++..     |++|+.|+. ++|+.
T Consensus       222 ~~~~~h~~~v~~~~~~p--~~~~-----l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          222 ATLEGHMSNVSFAVFHP--TLPI-----IISGSEDGTLKIWNS  257 (304)
T ss_dssp             EEEECCSSCEEEEEECS--SSSE-----EEEEETTSCEEEEET
T ss_pred             eeeCCCCCCEEEEEECC--CCCE-----EEEEcCCCeEEEEEC
Confidence            88999999999999998  5556     899999999 99954

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-37  Score=292.57  Aligned_cols=261  Identities=12%  Similarity=0.139  Sum_probs=193.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |.++|++++|+|++++||+|+.|+.|+||++.++.                         .+....+.+|.         
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~---------   55 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD---------   55 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence            45689999999999999999999999999998762                         12356788898         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         ..|.+++|  +|++++|++++.|++|++||+.+++ ....                                     
T Consensus        56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-------------------------------------   93 (377)
T 3dwl_C           56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQT-------------------------------------   93 (377)
T ss_dssp             ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCE-------------------------------------
T ss_pred             ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeee-------------------------------------
Confidence               89999999  5789999999999999999998876 1111                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc--eeEEeecCCCCCCC-CCCcEEEEEEecCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD-LTEVITSAEFHPIY  265 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~-~~~~v~~v~~~p~~  265 (487)
                             . .+.+|...|.+++|+|++++|+++ .|+.|++||++....  ...       .+.+ |...|.+++|+|++
T Consensus        94 -------~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~  158 (377)
T 3dwl_C           94 -------L-VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK-------HLKRPLRSTILSLDWHPNN  158 (377)
T ss_dssp             -------E-ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE-------EECSSCCSCEEEEEECTTS
T ss_pred             -------e-EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee-------EeecccCCCeEEEEEcCCC
Confidence                   0 136899999999999999999999 999999999985442  222       2345 89999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccc-cCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                       ++|++++.|+.|++||++.............+.... ......+ +|...|.+++|+|++++|++++ |+.|++||+++
T Consensus       159 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          159 -VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             -SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             -CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence             999999999999999997543211100000000000 0011112 6788999999999999999986 59999999987


Q ss_pred             CCce----eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          344 DSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       344 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                       +..    +..+..|...+               ++++|+|++++|++|+.|+.+ +|+...
T Consensus       237 -~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          237 -PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             -TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             -CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence             555    67777777654               699999999999999877655 776654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-36  Score=288.11  Aligned_cols=345  Identities=13%  Similarity=0.140  Sum_probs=236.1

Q ss_pred             ccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..|.+.|++++|+| ++++||+|+.||+|+|||+.+.+..                     ...+....+ +|.      
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~------  111 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS------  111 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS------
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC------
Confidence            45789999999999 9999999999999999998762210                     001111222 366      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcc---ccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                            ..|.+++|  ++++.+|++++.|++|++||+.   .++........                            
T Consensus       112 ------~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------------------------  155 (437)
T 3gre_A          112 ------STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE----------------------------  155 (437)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----------------------------
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----------------------------
Confidence                  88999999  5789999999999999999995   44433321100                            


Q ss_pred             eeeeeeeccceeeee-ccc--CCCceeEEE--eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC--CCCcE
Q 011368          185 GYHLEWTENMATKVY-PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVI  256 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~-~~~--~~~~v~~i~--~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v  256 (487)
                                ..+.+ +..  +...+.++.  +++++++|+++ .|+.|++||+++.. ....       +.+  |...|
T Consensus       156 ----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~-------~~~~~h~~~v  217 (437)
T 3gre_A          156 ----------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQI-------IENSPRHGAV  217 (437)
T ss_dssp             ----------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEE-------EECCGGGCCE
T ss_pred             ----------eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEE-------EccCCCCCce
Confidence                      11111 122  677788888  67899999999 99999999999544 4433       233  78899


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc----CCCCEEEEEe
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----NDGQHLLSRD  332 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~s~~  332 (487)
                      ++++|+|++ .+|++++.||.|++||+++++..    ..+..            .|...|.+++|+    |++.+|++++
T Consensus       218 ~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~s~~~~~l~s~~  280 (437)
T 3gre_A          218 SSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPITHVEVCQFYGKNSVIVVGGS  280 (437)
T ss_dssp             EEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred             EEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCceEEEEeccccCCCccEEEEEc
Confidence            999999999 99999999999999999987654    44431            235689999665    5677999986


Q ss_pred             -CCeEEEEeCCCCCceeeeeeccccccccccc-----------ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                       |+.|++||+++ ++.+..+..|...+....-           +........|++++|+ ++++|++|+.||.|++||+.
T Consensus       281 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          281 SKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             TTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred             CCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence             59999999987 8888888877644331110           0000112234689999 78999999999999999999


Q ss_pred             CCCceeEEEeccCCccccceEeeC-CccccccccceeeecccceecC-CCCCccccccccCCCeEEEEEcCC--CCEEEE
Q 011368          401 VGSAGGITVEAGKNENRKPILQAA-PRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPT--TNLIAC  476 (487)
Q Consensus       401 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~l~~g~~~~~~~w-~~~~~~~~~~~~~~~v~~~~~spd--~~~la~  476 (487)
                      ++ .....+.+|............ ....+     +...      ++ ...........|...|++++|+++  +.+|++
T Consensus       359 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s  426 (437)
T 3gre_A          359 EL-SSSKAVISPSRFSDVFIPTQVTANLTM-----LLRK------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA  426 (437)
T ss_dssp             CG-GGCEEEECC--CCCEEEEEEEETTEEE-----EEEE------CC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred             Cc-ccceEEecccccCceEEEEEeecceEE-----EEEe------cccccccccCcccccccceeeEeeeccCCceEEEE
Confidence            88 446677776543222221110 01111     1111      01 011122233468999999999998  779999


Q ss_pred             ecCCe-EEEEe
Q 011368          477 ANGNS-LFFHY  486 (487)
Q Consensus       477 ~s~~~-~~i~~  486 (487)
                      |+.|+ ++||+
T Consensus       427 ~~~dG~I~iw~  437 (437)
T 3gre_A          427 CDNSGLIGIFQ  437 (437)
T ss_dssp             EETTSCEEEEC
T ss_pred             EcCCceEEEeC
Confidence            99766 88885

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=282.08  Aligned_cols=304  Identities=12%  Similarity=0.168  Sum_probs=222.2

Q ss_pred             cccCcEEEEEEcCCCCEE-EEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l-~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      .|.+.|++++|+|+++.+ ++|+.   ||.|+||++.+++..                          .....+|.    
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~----   65 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKA----   65 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEES----
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeeccc----
Confidence            488999999999999655 56665   899999999877531                          12222566    


Q ss_pred             cccccccccceeEEEEEecCC---CcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                              ..|.+++|+  ++   +.+|++++.|+.|++||+.+++ ....                             
T Consensus        66 --------~~v~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------  106 (357)
T 3i2n_A           66 --------KPIKCGTFG--ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS-----------------------------  106 (357)
T ss_dssp             --------SCEEEEECT--TCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-----------------------------
T ss_pred             --------CcEEEEEEc--CCCCCCceEEEecCCCeEEEEeCCCCCccEEE-----------------------------
Confidence                    889999994  55   6899999999999999998775 3222                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEE------eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  254 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  254 (487)
                                        +.+|...|.+++      |+|++++|+++ .|+.|++||++........+...   ...+..
T Consensus       107 ------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~  165 (357)
T 3i2n_A          107 ------------------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV---QGENKR  165 (357)
T ss_dssp             ------------------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC---TTSCCC
T ss_pred             ------------------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc---CCCCCC
Confidence                              378999999995      57899999999 99999999999665444433110   111234


Q ss_pred             cEEEEE----EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC---CCCE
Q 011368          255 VITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN---DGQH  327 (487)
Q Consensus       255 ~v~~v~----~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~---~~~~  327 (487)
                      .+.+++    |+|++ .+|++++.||.|++||+++++..    . ...             |...|.+++|+|   ++.+
T Consensus       166 ~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~-~~~-------------~~~~v~~~~~~~~~~~~~~  226 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W-ETN-------------IKNGVCSLEFDRKDISMNK  226 (357)
T ss_dssp             CEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E-EEE-------------CSSCEEEEEESCSSSSCCE
T ss_pred             ceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e-ecC-------------CCCceEEEEcCCCCCCCCE
Confidence            788998    67898 99999999999999999987642    1 122             367899999999   8999


Q ss_pred             EEEEe-CCeEEEEeCCCCCceeeeee-----cccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeC
Q 011368          328 LLSRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG  400 (487)
Q Consensus       328 l~s~~-d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~  400 (487)
                      |++++ ++.|++||+++ +..+..+.     .|...+               ++++|+|+++ +|++|+.||.|++||+.
T Consensus       227 l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          227 LVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            99886 59999999986 55544443     565543               6999999998 89999999999999998


Q ss_pred             CCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEE-EecC
Q 011368          401 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA-CANG  479 (487)
Q Consensus       401 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la-~~s~  479 (487)
                      ++.... ....              ++..     ....   +.     .........|...|.+++|+|++++|+ +++.
T Consensus       291 ~~~~~~-~~~~--------------~g~~-----~~~~---~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          291 YPIQRS-KKDS--------------EGIE-----MGVA---GS-----VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             CCSCC---CCT--------------TSCC-----CCCC---CE-----EEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred             CCcccc-cccC--------------CCCc-----cccc---cc-----cceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence            764321 1000              0000     0000   00     012234456788999999999999998 6775


Q ss_pred             C-eEEEEe
Q 011368          480 N-SLFFHY  486 (487)
Q Consensus       480 ~-~~~i~~  486 (487)
                      | .+++|+
T Consensus       343 d~~i~iw~  350 (357)
T 3i2n_A          343 DQTVRVLI  350 (357)
T ss_dssp             TSEEEEEE
T ss_pred             CCcEEEEE
Confidence            4 599996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=280.99  Aligned_cols=259  Identities=16%  Similarity=0.225  Sum_probs=206.9

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|++++|+|++++||+|+.||.|+||++...                         ..+....+.+|.      
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~------   55 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------   55 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCS------
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------cceeeeEecCCC------
Confidence            3468999999999999999999999999999999744                         234567888998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|++..++.+|++++.|+.|++||+.+++.....                                  
T Consensus        56 ------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------------------------------   95 (379)
T 3jrp_A           56 ------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA----------------------------------   95 (379)
T ss_dssp             ------SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE----------------------------------
T ss_pred             ------CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee----------------------------------
Confidence                  8999999964334899999999999999999987632221                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-  263 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-  263 (487)
                                 .+..|...|.+++|+|+  +++|+++ .|+.|++||+.........      .+.+|...|.+++|+| 
T Consensus        96 -----------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           96 -----------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             -----------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCEEEEEECCC
T ss_pred             -----------eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecCCCCceEEEEEcCc
Confidence                       13678999999999999  9999999 9999999999865332221      2467889999999999 


Q ss_pred             ------------CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEE
Q 011368          264 ------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHL  328 (487)
Q Consensus       264 ------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l  328 (487)
                                  ++ .+|++++.||.|++||++++.........+.             +|...|.+++|+|+   +++|
T Consensus       159 ~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          159 TIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------------GHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             C----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEEC-------------CCSSCEEEEEECCCCSSSEEE
T ss_pred             cccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEe-------------cccCcEeEEEECCCCCCCCeE
Confidence                        57 9999999999999999987653322223333             45789999999999   8999


Q ss_pred             EEEe-CCeEEEEeCCCCCce--eeeee--cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          329 LSRD-YMNLKLWDIRMDSTP--VATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       329 ~s~~-d~~i~iwd~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ++++ |+.|++||++.....  ...+.  .+...               +++++|+|++++|++++.||.|++|++..+.
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            9886 699999999863211  11121  23332               2699999999999999999999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.7e-35  Score=285.33  Aligned_cols=316  Identities=12%  Similarity=0.206  Sum_probs=244.3

Q ss_pred             cccccCc-EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~-V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|.+. +.|++|  ++++|++|+.||+|++||+.+++.                           ...+.+|.     
T Consensus       117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~---------------------------~~~~~~h~-----  162 (464)
T 3v7d_B          117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------------LLQLSGHD-----  162 (464)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-----
T ss_pred             EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEeCCC-----
Confidence            3457776 467666  567999999999999999876653                           57888999     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|.+++|  ++++ +|++|+.|++|++||+.+++....                                  
T Consensus       163 -------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~----------------------------------  198 (464)
T 3v7d_B          163 -------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCTHV----------------------------------  198 (464)
T ss_dssp             -------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred             -------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEEEE----------------------------------
Confidence                   99999999  4555 899999999999999998875543                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeC--CCCCEEEEe-cCCeEEEEEccCCCceeEEeecC---------------CCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMK---------------PSN  248 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------------~~~  248 (487)
                                   +.+|...|.+++|+  ++++++++| .|+.|++||+.............               ...
T Consensus       199 -------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          199 -------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             -------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             -------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence                         37899999999998  578899999 99999999998544321100000               013


Q ss_pred             CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                      +.+|...+.++  ++++ .++++++.||.|++||+++++..    ..+.+             |...|.+++|+|+++++
T Consensus       266 ~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l  325 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILSG-------------HTDRIYSTIYDHERKRC  325 (464)
T ss_dssp             ECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEEETTTTEE
T ss_pred             ccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC-------------CCCCEEEEEEcCCCCEE
Confidence            46788888877  5677 89999999999999999987654    45554             47899999999999999


Q ss_pred             EEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          329 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       329 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      ++|+ |+.|++||+++ ++++..+.+|...+               .+++|+  +++|++|+.||.|++||+.++... .
T Consensus       326 ~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~-~  386 (464)
T 3v7d_B          326 ISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWDANDYSRK-F  386 (464)
T ss_dssp             EEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE-E
T ss_pred             EEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcEEEEECCCCcee-e
Confidence            9986 59999999987 88999999888754               578887  579999999999999999987432 2


Q ss_pred             EEeccCCccccceEeeCCccccccccceeeecccce-ecCC--CCCcccc-ccccCCCeEEEEEcCCCCEEEEecCCeEE
Q 011368          408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHEL-SYNLSSKLLHLAWHPTTNLIACANGNSLF  483 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~--~~~~~~~-~~~~~~~v~~~~~spd~~~la~~s~~~~~  483 (487)
                      .. .+...+..+.+++  ++.+     +++|+ ++. ++|+  .++.+.. ...+...|.+++|+ +..+++++++++..
T Consensus       387 ~~-~~~~~~~~~~~~~--~~~~-----l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~  456 (464)
T 3v7d_B          387 SY-HHTNLSAITTFYV--SDNI-----LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS  456 (464)
T ss_dssp             EE-ECTTCCCEEEEEE--CSSE-----EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             ee-cCCCCccEEEEEe--CCCE-----EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence            22 3566677778887  5566     78887 777 9994  4444443 56788999999997 33444455555543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-36  Score=287.09  Aligned_cols=310  Identities=14%  Similarity=0.181  Sum_probs=240.0

Q ss_pred             CCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ....+.|...|++++|+|++++|++|+.||.|++|++.+...                       ..+....+.+|.   
T Consensus        60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~~~h~---  113 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------AINSMARFSNHS---  113 (416)
T ss_dssp             CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------CCCEEEECCCSS---
T ss_pred             EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------cccchhhccCCc---
Confidence            344567899999999999999999999999999999876321                       122467788898   


Q ss_pred             ccccccccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                               ..|.+++|+  |+ +.+|++++.|+.|++||+.+++........                           
T Consensus       114 ---------~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---------------------------  155 (416)
T 2pm9_A          114 ---------SSVKTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP---------------------------  155 (416)
T ss_dssp             ---------SCCCEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC---------------------------
T ss_pred             ---------cceEEEEEc--CCCCCEEEEEcCCCeEEEEECCCCccccccccc---------------------------
Confidence                     899999994  65 789999999999999999877511000000                           


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                ... .....|...|.+++|+|+ +.+|+++ .|+.|++||+++. .....+... ....+|...|.+++|
T Consensus       156 ----------~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~-~~~~~~~~~v~~~~~  222 (416)
T 2pm9_A          156 ----------LTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYT-SPNSGIKQQLSVVEW  222 (416)
T ss_dssp             ----------BCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCC-CCSSCCCCCEEEEEE
T ss_pred             ----------ccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEecc-ccccccCCceEEEEE
Confidence                      000 012578999999999998 7899999 9999999999954 444333111 112334788999999


Q ss_pred             ecCCCCEEEEEeCCC---eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeE
Q 011368          262 HPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNL  336 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i  336 (487)
                      +|++..++++++.|+   .|++||++++...   ...+.            .+|...|.+++|+| ++++|++++ |+.|
T Consensus       223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~------------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v  287 (416)
T 2pm9_A          223 HPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN------------QGHQKGILSLDWCHQDEHLLLSSGRDNTV  287 (416)
T ss_dssp             CSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC------------SCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred             CCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee------------cCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence            999757999999998   9999999986322   13333            03578999999999 899999986 6999


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCC-CEEEEEcCCCcEEEEEeCCCCceeEE-------
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT-------  408 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~sg~~dg~i~iwd~~~~~~~~~~-------  408 (487)
                      ++||+++ ++++..+..|...+               ++++|+|++ .+|++++.||.|++|++.++......       
T Consensus       288 ~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~  351 (416)
T 2pm9_A          288 LLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ  351 (416)
T ss_dssp             EEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------
T ss_pred             EEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc
Confidence            9999997 88888998887754               589999999 89999999999999999876432211       


Q ss_pred             ---------------------------EeccCCccccceEeeCCccccccccceeeecccce-ecCCCC
Q 011368          409 ---------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       409 ---------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                                                 ...|..++..++|+|  ++++     +++|+.|+. ++|+..
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~-----la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF--GGKL-----VQITPDGKGVSITNPK  413 (416)
T ss_dssp             ---------------CCSCCCSSCCCCCSTTCCCSCCCEEET--TTEE-----ECBCTTSSCBCCBCCC
T ss_pred             cCCcccccccccccccccccccccccCCccccCCccceEEee--CCeE-----EEEeCCCCeEEEEEec
Confidence                                       111667788899998  7888     999999999 999653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-35  Score=276.22  Aligned_cols=256  Identities=14%  Similarity=0.181  Sum_probs=198.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|++++|+|++.+|++|+.|++|+|||+.+++.                           +..+.+|.      
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~------  118 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQ------  118 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------------EEEEECCC------
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCC------
Confidence            346899999999999999999999999999999887653                           57788998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  +|++.+|++++.|++|++||+.........                                  
T Consensus       119 ------~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------------------------  156 (343)
T 2xzm_R          119 ------SEVYSVAF--SPDNRQILSAGAEREIKLWNILGECKFSSA----------------------------------  156 (343)
T ss_dssp             ------SCEEEEEE--CSSTTEEEEEETTSCEEEEESSSCEEEECC----------------------------------
T ss_pred             ------CcEEEEEE--CCCCCEEEEEcCCCEEEEEeccCCceeeee----------------------------------
Confidence                  89999999  578999999999999999999743322110                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCC----------CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~----------~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  256 (487)
                                 ...+|...|.+++|+|++          .+|+++ .|+.|++||..  .....       .+.+|...|
T Consensus       157 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~-------~~~~h~~~v  216 (343)
T 2xzm_R          157 -----------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRY-------TFKAHESNV  216 (343)
T ss_dssp             -----------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEE-------EEECCSSCE
T ss_pred             -----------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeE-------EEcCccccc
Confidence                       014788899999999986          789998 99999999954  33322       346899999


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeE
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  336 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i  336 (487)
                      .+++|+|++ ++|++++.||.|++||++.....   ...+..              ...|.+++|+|++.+++++.|+.|
T Consensus       217 ~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~--------------~~~v~~v~~sp~~~~la~~~d~~v  278 (343)
T 2xzm_R          217 NHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA--------------GSTINQIAFNPKLQWVAVGTDQGV  278 (343)
T ss_dssp             EEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC--------------SSCEEEEEECSSSCEEEEEESSCE
T ss_pred             eEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC--------------CCcEEEEEECCCCCEEEEECCCCE
Confidence            999999999 99999999999999999543321   122222              356999999999999998889999


Q ss_pred             EEEeCCCCCceee--eeecccccccccccc-cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          337 KLWDIRMDSTPVA--TFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       337 ~iwd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ++||+.+ .....  .+..+..  ...... .+..   .+++++|+|+|++|++|+.||.|++|+++++
T Consensus       279 ~iw~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          279 KIFNLMT-QSKAPVCTIEAEPI--TKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEEESSS-CCSCSEEECCCCSG--GGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEEEeCC-CCCCceEEeecCcc--hhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            9999976 44332  3321110  000000 0111   2369999999999999999999999999765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-35  Score=276.52  Aligned_cols=247  Identities=21%  Similarity=0.346  Sum_probs=206.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|.+++|+|+|++|++|+.|+.+++|++......                     ........+.+|.        
T Consensus       104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------~~~~~~~~~~~h~--------  154 (354)
T 2pbi_B          104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------NMAAKKKSVAMHT--------  154 (354)
T ss_dssp             CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC---------------------CSGGGCEEEEECS--------
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc---------------------cccccceeeeccC--------
Confidence            36778999999999999999999999999998654321                     0112245567788        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..|.+++|  ++++..|++++.|++|++||+.+++....                                     
T Consensus       155 ----~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~~-------------------------------------  191 (354)
T 2pbi_B          155 ----NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQS-------------------------------------  191 (354)
T ss_dssp             ----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEE-------------------------------------
T ss_pred             ----CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEEE-------------------------------------
Confidence                88999999  57888999999999999999998875543                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                +.+|...|.+++|+|  ++++|++| .|+.|++||++++ .+...       +.+|...|.+++|+|++ 
T Consensus       192 ----------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~-------~~~h~~~v~~v~~~p~~-  252 (354)
T 2pbi_B          192 ----------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQA-------FETHESDVNSVRYYPSG-  252 (354)
T ss_dssp             ----------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEE-------ECCCSSCEEEEEECTTS-
T ss_pred             ----------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEE-------ecCCCCCeEEEEEeCCC-
Confidence                      378999999999987  57899999 9999999999954 44433       46899999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.|+.|++||++.++..    ..+..+           .+...+.+++|+|+|++|++|+ |+.|++||+.+ +
T Consensus       253 ~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~-----------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~  316 (354)
T 2pbi_B          253 DAFASGSDDATCRLYDLRADREV----AIYSKE-----------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK-G  316 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEE----EEECCT-----------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT-C
T ss_pred             CEEEEEeCCCeEEEEECCCCcEE----EEEcCC-----------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCC-C
Confidence            99999999999999999987533    333321           1234689999999999999986 59999999987 7


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      ..+..+.+|...+               ++++|+|||++|++|+.||.|+||+
T Consensus       317 ~~~~~l~~h~~~v---------------~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 SRVSILFGHENRV---------------STLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ceEEEEECCCCcE---------------EEEEECCCCCEEEEEcCCCCEEecC
Confidence            8888888888755               6999999999999999999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.3e-35  Score=276.60  Aligned_cols=310  Identities=10%  Similarity=0.044  Sum_probs=214.2

Q ss_pred             CcEEEEEEcCCCCEEEEEecC-------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      -||+|++|+|||++||+|+.+       +.|++|+++.....     ....+            .......+.+|+    
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~------------~~~~~~~l~~~~----   73 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQF------------HILSEFALEDND----   73 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHE------------EEEEEEECCTTS----
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeee------------eeeeEEEccCCC----
Confidence            479999999999999999753       35999999876532     01111            011123466777    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEE-----------eCCCcEEEEEccccceeEe--eecCCCCceeeeeccccccc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVKKI--KEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~-----------~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  172 (487)
                              ..|.++++.    +..++++           +.|+.+++|++........  .....               
T Consensus        74 --------~~v~s~~~~----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~---------------  126 (365)
T 4h5i_A           74 --------DSPTAIDAS----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF---------------  126 (365)
T ss_dssp             --------CCCCEEEEE----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS---------------
T ss_pred             --------CceEEEEeC----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece---------------
Confidence                    778888873    4456654           4577889998875432111  00000               


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEE--e-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                               .....+...+.+++|+|||+++++  + .|++|++||+++.. ....+       
T Consensus       127 -------------------------~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~~-------  173 (365)
T 4h5i_A          127 -------------------------DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFEI-------  173 (365)
T ss_dssp             -------------------------SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEEE-------
T ss_pred             -------------------------eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEEe-------
Confidence                                     001345667899999999999864  4 68999999999544 33321       


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                       .|...|.+++|+|+| +++++++.++ +++|+..++.....  ...             .+|...|.+++|+|++++++
T Consensus       174 -~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~~~--~~~-------------~~~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          174 -ETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCIAR--KTD-------------FDKNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             -ECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEEEE--ECC-------------CCTTEEEEEEEEEETTEEEE
T ss_pred             -CCCCceEEEEEccCC-ceEEecccee-EEEEEeccCcceee--eec-------------CCCCCCEEEEEEcCCCCEEE
Confidence             366789999999999 9999988655 66666666543210  111             23567899999999999999


Q ss_pred             EEe-CC----eEEEEeCCCCCce---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          330 SRD-YM----NLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       330 s~~-d~----~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +++ ++    .+++|++......   ...+..|...+               ++++|||||++||+|+.|++|+|||+.+
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE---------------EEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             EEecCCcceeEEeecccccceecceeeeeecCCCCCe---------------EeEEECCCCCceEEEcCCCEEEEEECCC
Confidence            875 43    6888988752211   23445555533               6999999999999999999999999999


Q ss_pred             CCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeE
Q 011368          402 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLL  463 (487)
Q Consensus       402 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~  463 (487)
                      ++.....+++|..+|++++|+|  ++++     |++|+.|+. ++|+.............++.
T Consensus       301 ~~~~~~~~~gH~~~V~~v~fSp--dg~~-----laS~S~D~tvrvw~ip~~~~~~~s~~~~l~  356 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTISP--DSTY-----VASVSAANTIHIIKLPLNYANYTSMKQKIS  356 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEECT--TSCE-----EEEEETTSEEEEEECCTTTTC---------
T ss_pred             CcEEEEecCcccCCEEEEEECC--CCCE-----EEEEeCCCeEEEEEcCCCCcCccCccccce
Confidence            8554445689999999999999  7888     999999999 99966544443333333333

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-36  Score=283.25  Aligned_cols=296  Identities=8%  Similarity=0.020  Sum_probs=217.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...|.+++|+|||+++|+++.|++|+  |...++                              .+++|.          
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~----------   52 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS----------   52 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence            46799999999999999999999999  644442                              347888          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        ..|.+++|+  |+|       .++.+.+|+.......                                         
T Consensus        53 --~~v~~V~Fs--Pdg-------~~~~~~~~~~~~~~~~-----------------------------------------   80 (588)
T 2j04_A           53 --KNLFHVKEF--PLE-------FENKLDFELAQQNGLL-----------------------------------------   80 (588)
T ss_dssp             --GGTEEEEEE--CCC-------CCCTTTTSCCCSSCSS-----------------------------------------
T ss_pred             --ccEEEEEEC--CCC-------CcceEEEEeCCCceEe-----------------------------------------
Confidence              889999995  676       5666666554332211                                         


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC-----cEEEEEEecCC
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-----VITSAEFHPIY  265 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~  265 (487)
                              ...|...|.+++|+|+|+.||++ .||.|++||.+.   ++..       +. |..     .+.+++|+|+|
T Consensus        81 --------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~-------l~-~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A           81 --------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTN-------LD-SKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             --------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEE-------CC-CSSCSTTTCEEEEEECSSS
T ss_pred             --------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeee-------cc-CCCccccccEEEEEEcCCC
Confidence                    12568889999999999999999 999999999652   3332       23 443     59999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccc---cceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  342 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~  342 (487)
                       ++|++|+.||+|+|||+.++.....   .+..+..|         ..+|..+|.+++|+||| +++++.|+.|++||+.
T Consensus       142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~  210 (588)
T 2j04_A          142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------DAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------CTTCCCCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred             -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------cccccccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence             9999999999999999998753110   12444332         24567899999999999 5555668999999997


Q ss_pred             CCCce---eeeee-cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368          343 MDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       343 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      . +..   ...++ +|...+               .+++|+  |+.||+++ +++|++||+.+++.... ..+|...+..
T Consensus       211 ~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~~gh~~~V~~  270 (588)
T 2j04_A          211 A-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-KTGSLENFHI  270 (588)
T ss_dssp             S-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-ECSCCSCCCE
T ss_pred             C-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-EcCCCceEEE
Confidence            6 442   24453 555433               589999  68999887 69999999987743233 3389999999


Q ss_pred             ceE--eeCCccccccccceeeecccce------------------------ecCCCCCccccccccCCCeEEEEEcCCCC
Q 011368          419 PIL--QAAPRARRSSLSNLTRGLYRQA------------------------HENSSSGHHELSYNLSSKLLHLAWHPTTN  472 (487)
Q Consensus       419 ~~~--~~~~~~~~~~~~~l~~g~~~~~------------------------~~w~~~~~~~~~~~~~~~v~~~~~spd~~  472 (487)
                      +++  +|  ++..     ++++..++.                        ++|+..............|.+++|||||+
T Consensus       271 va~~~s~--d~~~-----La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~  343 (588)
T 2j04_A          271 IPLNHEK--ESTI-----LLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY  343 (588)
T ss_dssp             EEETTCS--SCEE-----EEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred             EEeeeCC--CCCE-----EEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence            999  66  5555     666665544                        44533222222333355699999999999


Q ss_pred             EEEEec
Q 011368          473 LIACAN  478 (487)
Q Consensus       473 ~la~~s  478 (487)
                      .+|+++
T Consensus       344 ~lA~~~  349 (588)
T 2j04_A          344 SIAIVY  349 (588)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-34  Score=262.72  Aligned_cols=258  Identities=15%  Similarity=0.115  Sum_probs=203.6

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++| |++++|++|+.||.|++||+.+++.                           ...+..|.       
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------------~~~~~~~~-------   59 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------------GTVVYTGQ-------   59 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------------EEEEEECS-------
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------------EEEeecCC-------
Confidence            358999999999 9999999999999999999976643                           46677787       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++.+|++++.|+.|++|++.......                                     
T Consensus        60 -----~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~-------------------------------------   95 (313)
T 3odt_A           60 -----GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGED-------------------------------------   95 (313)
T ss_dssp             -----SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTSC-------------------------------------
T ss_pred             -----ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCCC-------------------------------------
Confidence                 88999999  4789999999999999999997643111                                     


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~  266 (487)
                            .... +.+|...|.+++|  ++++++++ .|+.|++||.   .....       .+..|...+.++.|.| ++ 
T Consensus        96 ------~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~-------~~~~~~~~v~~~~~~~~~~-  155 (313)
T 3odt_A           96 ------PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVY-------NLQAHNASVWDAKVVSFSE-  155 (313)
T ss_dssp             ------C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEE-------EEECCSSCEEEEEEEETTT-
T ss_pred             ------cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEE-------ecccCCCceeEEEEccCCC-
Confidence                  1111 3789999999999  57899998 9999999992   22322       2457889999999998 76 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~  345 (487)
                      ..+++++.||.|++||....  .    ..+..            .|...+.+++|+|++. ++++ .++.|++||+++ +
T Consensus       156 ~~l~~~~~d~~i~i~d~~~~--~----~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~  215 (313)
T 3odt_A          156 NKFLTASADKTIKLWQNDKV--I----KTFSG------------IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-G  215 (313)
T ss_dssp             TEEEEEETTSCEEEEETTEE--E----EEECS------------SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-C
T ss_pred             CEEEEEECCCCEEEEecCce--E----EEEec------------cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-h
Confidence            99999999999999994332  1    33333            1467899999999998 6665 569999999987 8


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      +++..+..|...+               ++++|+|++ .|++++.||.|++||+.+++ ....+..|..++..+.++
T Consensus       216 ~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~  275 (313)
T 3odt_A          216 DVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCM  275 (313)
T ss_dssp             CEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEEC
T ss_pred             hhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEc
Confidence            8888898887754               699999999 58899999999999998873 344445554444333333

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=277.98  Aligned_cols=293  Identities=15%  Similarity=0.169  Sum_probs=231.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |.+.|++++|+|++++|++|+.||.|++|+ .+++                           ....+.+|.         
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~---------------------------~~~~~~~~~---------  149 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA---------------------------LLNVLNFHR---------  149 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC---------------------------EEEEECCCC---------
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC---------------------------eeeeccCCC---------
Confidence            677999999999999999999999999999 3222                           357788898         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ..|.+++|  ++++.+|++++.|+.|++||+.+++.............                             
T Consensus       150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------------------  195 (425)
T 1r5m_A          150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS-----------------------------  195 (425)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------------------------------
T ss_pred             ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc-----------------------------
Confidence               89999999  57899999999999999999988876554221110000                             


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                         .............+.+++|+|++. ++++ .++.|++||+.... ...       .+..|...|.+++|+|++ .+|
T Consensus       196 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~-~~l  262 (425)
T 1r5m_A          196 ---SINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKT-PTG-------KLIGHHGPISVLEFNDTN-KLL  262 (425)
T ss_dssp             -------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSS-CSE-------EECCCSSCEEEEEEETTT-TEE
T ss_pred             ---ceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCc-eee-------eeccCCCceEEEEECCCC-CEE
Confidence               000000122333489999998865 6666 99999999999543 332       245788999999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      ++++.|+.|++||+++++..    ..+..             |...|.+++|+|++ ++++++ ++.|++||+++ +..+
T Consensus       263 ~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~  323 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNSQ----NCFYG-------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLL  323 (425)
T ss_dssp             EEEETTSCEEEECSSSBSCS----EEECC-------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEE
T ss_pred             EEEcCCCEEEEEECCCCccc----eEecC-------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEe
Confidence            99999999999999987644    44444             46789999999999 777775 69999999987 7888


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-------------------ceeEEE
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-------------------AGGITV  409 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-------------------~~~~~~  409 (487)
                      ..+..|...+               .+++|+|++++|++++.||.|++||+.++.                   .....+
T Consensus       324 ~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (425)
T 1r5m_A          324 ALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY  388 (425)
T ss_dssp             EEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE
T ss_pred             EecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh
Confidence            8888777644               699999999999999999999999998774                   157888


Q ss_pred             eccCC--ccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          410 EAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       410 ~~~~~--~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      ..|..  .+..+.|+|  ++++     |++++.|+. ++|+.
T Consensus       389 ~~~~~~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          389 QSSQDNDYIFDLSWNC--AGNK-----ISVAYSLQEGSVVAI  423 (425)
T ss_dssp             CCTTCCCCEEEEEECT--TSSE-----EEEEESSSCCEEEEC
T ss_pred             cCcccCCceEEEEccC--CCce-----EEEEecCceEEEEee
Confidence            89977  999999998  5666     899999998 88854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-34  Score=274.59  Aligned_cols=254  Identities=13%  Similarity=0.165  Sum_probs=197.2

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecC-CCcccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE  113 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~  113 (487)
                      +.+++|++  ..+++++.||.|++|++.+++.                           ...+.. |.            
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~------------  134 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDES------------  134 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTT------------
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCC------------
Confidence            44566665  4577888999999999987754                           233333 66            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.+++|  ++++.+|++++.||.|++||+.+++....                                         
T Consensus       135 ~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------------------  171 (401)
T 4aez_A          135 TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRT-----------------------------------------  171 (401)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------------------------
T ss_pred             CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEE-----------------------------------------
Confidence            88999999  57899999999999999999988765443                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|...|.+++|  +++.|+++ .|+.|++||++........       +.+|...|.+++|+|++ .+|+++
T Consensus       172 ------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~s~  235 (401)
T 4aez_A          172 ------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGLAWRSDG-LQLASG  235 (401)
T ss_dssp             ------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTS-SEEEEE
T ss_pred             ------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEEEEcCCC-CEEEEE
Confidence                  3689999999999  46799999 9999999999855554433       46799999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe---CCeEEEEeCCCCCcee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~---d~~i~iwd~~~~~~~~  348 (487)
                      +.|+.|++||+++++..    ..+..             |...|.+++|+|++. ++++++   |+.|++||+.+ +.++
T Consensus       236 ~~d~~v~iwd~~~~~~~----~~~~~-------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~  297 (401)
T 4aez_A          236 GNDNVVQIWDARSSIPK----FTKTN-------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARV  297 (401)
T ss_dssp             ETTSCEEEEETTCSSEE----EEECC-------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEE
T ss_pred             eCCCeEEEccCCCCCcc----EEecC-------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEE
Confidence            99999999999987543    44444             478999999999775 555554   69999999987 7777


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE--EcCCCcEEEEEeCCCCce-eEEEeccCCccccceEe
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQ  422 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s--g~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~  422 (487)
                      ..+..+..                +.+++|+|++++|++  |+.||.|++|++.+++.. ...+.+|...+..++++
T Consensus       298 ~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          298 NTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             EEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred             EEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence            77764432                269999999999998  558999999999876332 22334444433333333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.9e-34  Score=266.84  Aligned_cols=272  Identities=13%  Similarity=0.139  Sum_probs=207.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|++++||+|+.||.|+|||+.++..                       ..+....+.+|.       
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~-------   57 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD-------   57 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence            46899999999999999999999999999999987643                       345567788998       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|+|..++.+|++++.|+.|++||+..++......                                  
T Consensus        58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~----------------------------------   98 (351)
T 3f3f_A           58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR----------------------------------   98 (351)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC----------------------------------
T ss_pred             -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc----------------------------------
Confidence                 89999999643268999999999999999998764211000                                  


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeE-----EeecCCCCCCCCCCcEEEEE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFN-----IVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~v~~v~  260 (487)
                         ....... +..|...|.+++|+|+  +++|+++ .|+.|++||+++......     ...........|...+.+++
T Consensus        99 ---~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (351)
T 3f3f_A           99 ---RWNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS  174 (351)
T ss_dssp             ---SEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE
T ss_pred             ---Ccceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE
Confidence               0001111 3689999999999999  9999999 999999999985542111     00111112236778899999


Q ss_pred             EecC---CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC----CEEEEEe-
Q 011368          261 FHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----QHLLSRD-  332 (487)
Q Consensus       261 ~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~s~~-  332 (487)
                      |+|+   + .++++++.++.+.+|+...+...  ....+             .+|...|.+++|+|++    ++|++++ 
T Consensus       175 ~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          175 WCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAKL-------------PGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             ECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEEC-------------CCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             eccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeeec-------------CCCCcceeEEEECCCCCCcceEEEEEcC
Confidence            9997   6 99999999999988887765421  11233             3457899999999998    7888886 


Q ss_pred             CCeEEEEeCCCCC---------------------------------------------ceeeeeecccccccccccccCC
Q 011368          333 YMNLKLWDIRMDS---------------------------------------------TPVATFKIHEHLRPKLCDLYNN  367 (487)
Q Consensus       333 d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  367 (487)
                      |+.|++||++...                                             ..+..+.+|...+         
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------  309 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV---------  309 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE---------
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE---------
Confidence            5999999997521                                             3344444554433         


Q ss_pred             CCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          368 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       368 ~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                            ++++|+|++++|++|+.||.|++|++.+++.
T Consensus       310 ------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          310 ------WSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             ------EEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ------EEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence                  6999999999999999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=272.72  Aligned_cols=346  Identities=16%  Similarity=0.206  Sum_probs=230.2

Q ss_pred             ccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeE-----eeecCCCc
Q 011368           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-----TEFQSHEP  102 (487)
Q Consensus        29 ~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~  102 (487)
                      ..|.+.|++++|+| ++++|++|+.||.|+|||+.+++...       .+            .....     ....+|. 
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~------------~~~~~~~~~~~~~~~~~-   99 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-------YY------------TCKAVCSIGRDHPDVHR-   99 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-------CE------------EECEEEEECTTCTTCCS-
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-------eE------------eccccccccccccccCC-
Confidence            34899999999999 99999999999999999998876530       00            00000     0113466 


Q ss_pred             ccccccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          103 EFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       103 ~~~~~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                                 ..|.+++|+  + ++.+|++++.|+.|++||+.+++....                             
T Consensus       100 -----------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------------------------  137 (408)
T 4a11_B          100 -----------YSVETVQWY--PHDTGMFTSSSFDKTLKVWDTNTLQTADV-----------------------------  137 (408)
T ss_dssp             -----------SCEEEEEEC--TTCTTCEEEEETTSEEEEEETTTTEEEEE-----------------------------
T ss_pred             -----------CcEEEEEEc--cCCCcEEEEEeCCCeEEEeeCCCCcccee-----------------------------
Confidence                       899999995  5 677999999999999999998875543                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  257 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  257 (487)
                                         ..+...+.++.++|   ++.+++++ .|+.|++||++++. ...       .+.+|...|.
T Consensus       138 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~-------~~~~~~~~v~  190 (408)
T 4a11_B          138 -------------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSH-------ILQGHRQEIL  190 (408)
T ss_dssp             -------------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCE-------EECCCCSCEE
T ss_pred             -------------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eee-------eecCCCCcEE
Confidence                               34677789999988   45589998 99999999998544 333       2467899999


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc--ccCccccccccccceeEEEEcCCCCEEEEEe-CC
Q 011368          258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  334 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~  334 (487)
                      +++|+|++..+|++++.||.|++||++.+....   ..+..+..  .........+|...|.+++|+|++++|++++ |+
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence            999999993369999999999999999875321   33332211  1122233467889999999999999999986 59


Q ss_pred             eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      .|++||+.+ +.....+..+......       ...   ........+..+++++.|+.|++||+.++ .....+.+|..
T Consensus       268 ~i~vwd~~~-~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~  335 (408)
T 4a11_B          268 RMRLWNSSN-GENTLVNYGKVCNNSK-------KGL---KFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYK  335 (408)
T ss_dssp             CEEEEETTT-CCBCCCCCCCCCCCCS-------SCC---CCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSS
T ss_pred             eEEEEECCC-Cccceecccccccccc-------ccc---eeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCC
Confidence            999999987 5544443332211100       000   11222234556777788999999999987 55788999999


Q ss_pred             ccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCE--EEEecCCeEEEEe
Q 011368          415 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL--IACANGNSLFFHY  486 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~--la~~s~~~~~i~~  486 (487)
                      .|.+++++|  ++.+     |++|+.|+. ++|+....... ......-....+.|....  ...+.++.+.+|+
T Consensus       336 ~v~~~~~s~--~~~~-----l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          336 TVDCCVFQS--NFQE-----LYSGSRDCNILAWVPSLYEPV-PDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             CEEEEEEET--TTTE-----EEEEETTSCEEEEEECC--------------------------------------
T ss_pred             eEEEEEEcC--CCCE-----EEEECCCCeEEEEeCCCCCcc-CCCCceEeccccccccceeecccCccCceeecC
Confidence            999999998  6677     999999999 99944322111 111111122334443332  2233355688886

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.9e-34  Score=260.06  Aligned_cols=253  Identities=16%  Similarity=0.188  Sum_probs=194.9

Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ..+.+|.            +.|.+++|  +++|++|++|+.|++|++||+..+...                        
T Consensus         3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~------------------------   44 (297)
T 2pm7_B            3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHK------------------------   44 (297)
T ss_dssp             EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBC------------------------
T ss_pred             eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcE------------------------
Confidence            4577888            89999999  689999999999999999999754211                        


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCc-eeEEeecCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMD  250 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  250 (487)
                                          .... +.+|...|++++|+++  +++|++| .|++|++||++++.. ...       .+.
T Consensus        45 --------------------~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~-------~~~   96 (297)
T 2pm7_B           45 --------------------LIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA-------VHA   96 (297)
T ss_dssp             --------------------CCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE-------EEC
T ss_pred             --------------------EEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE-------Eee
Confidence                                1111 3799999999999864  8999999 999999999985431 221       246


Q ss_pred             CCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC----
Q 011368          251 DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----  324 (487)
Q Consensus       251 ~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~----  324 (487)
                      +|...|.+++|+|+  + .+|++++.|+.|++||++++....  ...+.             +|...|.+++|+|+    
T Consensus        97 ~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~-------------~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           97 VHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PIIID-------------AHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEEEE-------------CCSSCEEEEEECCCC---
T ss_pred             cCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eeeee-------------cccCccceEeecCCcccc
Confidence            78999999999997  7 899999999999999998753210  12333             45789999999997    


Q ss_pred             ---------CCEEEEEe-CCeEEEEeCCCCCc---eeeeeecccccccccccccCCCCcceeeEEEEcCCC---CEEEEE
Q 011368          325 ---------GQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATG  388 (487)
Q Consensus       325 ---------~~~l~s~~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~sg  388 (487)
                               +++|++|+ |+.|++||++....   ....+.+|...+               ++++|+|++   ++|++|
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V---------------~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEE
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce---------------EEEEECCCCCCceEEEEE
Confidence                     56899886 69999999986222   456777887754               699999984   899999


Q ss_pred             cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEc
Q 011368          389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH  468 (487)
Q Consensus       389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~s  468 (487)
                      +.|++|+|||+.+.......                                          .......|...|.+++|+
T Consensus       226 s~D~~v~iWd~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s  263 (297)
T 2pm7_B          226 SQDRTCIIWTQDNEQGPWKK------------------------------------------TLLKEEKFPDVLWRASWS  263 (297)
T ss_dssp             ETTSCEEEEEESSTTSCCEE------------------------------------------EESSSSCCSSCEEEEEEC
T ss_pred             ECCCcEEEEEeCCCCCccce------------------------------------------eeeecccCCCcEEEEEEC
Confidence            99999999999864211000                                          000012345688999999


Q ss_pred             CCCCEEEEecCCe-EEEEe
Q 011368          469 PTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       469 pd~~~la~~s~~~-~~i~~  486 (487)
                      |++++||+++.|+ +.||.
T Consensus       264 ~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          264 LSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             SSSCCEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEcCCCcEEEEE
Confidence            9999999988665 88886

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.4e-34  Score=267.90  Aligned_cols=285  Identities=9%  Similarity=0.007  Sum_probs=226.2

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|.+.|++++|+|++++|++|+.||.|+||++.+++.                        ......+.+|.        
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~--------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK--------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence            5889999999999999999999999999999987752                        11234455787        


Q ss_pred             cccccceeEEEEEecCCCc-EEEEEeCCCcEEEEEc-cccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                          ..|.+++|+  +++. +|++++.|+.|++||+ .+++...                                    
T Consensus        57 ----~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~------------------------------------   94 (342)
T 1yfq_A           57 ----HPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQA------------------------------------   94 (342)
T ss_dssp             ----SCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEE------------------------------------
T ss_pred             ----CceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCceEe------------------------------------
Confidence                889999995  5789 9999999999999999 8776432                                    


Q ss_pred             eeeeccceeeeeccc--CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCC--------CceeEEeecCCCCCCCCCCcE
Q 011368          188 LEWTENMATKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~v  256 (487)
                                  +.+  |...|.+++|+| ++.|+++ .|+.|++||++..        ....       ..+. |...|
T Consensus        95 ------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~-~~~~v  153 (342)
T 1yfq_A           95 ------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-------NNTK-VKNKI  153 (342)
T ss_dssp             ------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-------SSSS-SCCCE
T ss_pred             ------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-------eEEe-eCCce
Confidence                        256  999999999999 9999999 9999999999841        2111       2333 88899


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-C
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y  333 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d  333 (487)
                      .+++|+|++   +++++.|+.|++||+++ +....  .....             .|...+.+++|+| +++++++++ +
T Consensus       154 ~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~--~~~~~-------------~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          154 FTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG--TIEES-------------GLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             EEEEECSSE---EEEEESTTEEEEEESSCCTTCCC--EEEEC-------------SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             EEEEecCCc---EEEEeCCCeEEEEECCccccccc--eeeec-------------CCCCceeEEEECCCCCCEEEEEecC
Confidence            999999874   99999999999999988 54211  01111             2467899999999 999999986 5


Q ss_pred             CeEEEEeCCCC-----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEE
Q 011368          334 MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       334 ~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~  408 (487)
                      |.|++|+++..     ......+..|.....      ..+....+++++|+|++++|++|+.||.|++||+.++ .....
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~  288 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKN  288 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEE
T ss_pred             CcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhh
Confidence            99999999874     277778877754110      0001112369999999999999999999999999987 45777


Q ss_pred             Eecc-CCccccceEeeCCccccccccceeeecccce
Q 011368          409 VEAG-KNENRKPILQAAPRARRSSLSNLTRGLYRQA  443 (487)
Q Consensus       409 ~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~  443 (487)
                      +.+| ..++..++  |  ++.+     |++|+.|+.
T Consensus       289 ~~~~h~~~v~~~~--~--~~~~-----l~s~s~Dg~  315 (342)
T 1yfq_A          289 FAKFNEDSVVKIA--C--SDNI-----LCLATSDDT  315 (342)
T ss_dssp             CCCCSSSEEEEEE--E--CSSE-----EEEEEECTH
T ss_pred             hhcccCCCceEec--C--CCCe-----EEEEecCCc
Confidence            8888 99999888  4  6777     999999886

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-33  Score=270.03  Aligned_cols=281  Identities=13%  Similarity=0.176  Sum_probs=229.9

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .++.|+||++ ++||+|. |++|+|||..+++..                         ....+.+|.            
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------  147 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------  147 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            4678999975 5788775 899999999888642                         223445666            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|++|+|  +|+|++|++|+.|++|++||+.+++....                                         
T Consensus       148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~-----------------------------------------  184 (420)
T 4gga_A          148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN-----------------------------------------  184 (420)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE-----------------------------------------
Confidence            88999999  68999999999999999999998876544                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|...+.+++++  +..+++| .|+.+++||..........       +.+|...+..+.|+|++ .+++++
T Consensus       185 ------~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~~~g-~~l~s~  248 (420)
T 4gga_A          185 ------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDG-RHLASG  248 (420)
T ss_dssp             ------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTS-SEEEEE
T ss_pred             ------EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeecCCC-Ceeeee
Confidence                  37899999998875  6899999 9999999999866555443       56899999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEE--e-CCeEEEEeCCCCCcee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~--~-d~~i~iwd~~~~~~~~  348 (487)
                      +.|+.+++||...++..........             .|...|.+++|+|++. +++++  + |+.|++||+.+ +.++
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~-------------~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~  314 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFT-------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL  314 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEEC-------------CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEE
T ss_pred             eccccceEEeeccccccceeeeeec-------------ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccc
Confidence            9999999999988764332233333             3578999999999765 44443  2 69999999997 8888


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      ..+..+...                .++.|+|+++.+++++  .|+.|+|||+.++ ..+.++.+|.+.|.+++|+|  +
T Consensus       315 ~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~sp--d  375 (420)
T 4gga_A          315 SAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSP--D  375 (420)
T ss_dssp             EEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECT--T
T ss_pred             eeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcC--C
Confidence            887766543                4899999999988765  7899999999988 55789999999999999998  7


Q ss_pred             cccccccceeeecccce-ecCCCCC
Q 011368          427 ARRSSLSNLTRGLYRQA-HENSSSG  450 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-~~w~~~~  450 (487)
                      +.+     |++|+.|+. ++|+..+
T Consensus       376 g~~-----l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          376 GAT-----VASAAADETLRLWRCFE  395 (420)
T ss_dssp             SSC-----EEEEETTTEEEEECCSC
T ss_pred             CCE-----EEEEecCCeEEEEECCC
Confidence            777     999999999 9996643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-33  Score=258.52  Aligned_cols=246  Identities=13%  Similarity=0.254  Sum_probs=203.6

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|.+++|+|++++|++|+.||.|++||+.+++.                           +..+.+|.       
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---------------------------~~~~~~~~-------  107 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------------------------LKTLKGHS-------  107 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS-------
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE---------------------------EEEEcCCC-------
Confidence            45888999999999999999999999999999886653                           57788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++.+|++++.|+.|++||+.+++....                                    
T Consensus       108 -----~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------------  144 (312)
T 4ery_A          108 -----NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKT------------------------------------  144 (312)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEEEE------------------------------------
T ss_pred             -----CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEEEE------------------------------------
Confidence                 88999999  57899999999999999999998765433                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +..|...|.+++|+|++++|+++ .|+.|++||+++.. ....+      ...+...+.+++|+|++ .
T Consensus       145 -----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~------~~~~~~~~~~~~~~~~~-~  205 (312)
T 4ery_A          145 -----------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTL------IDDDNPPVSFVKFSPNG-K  205 (312)
T ss_dssp             -----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEE------CCSSCCCEEEEEECTTS-S
T ss_pred             -----------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEE------eccCCCceEEEEECCCC-C
Confidence                       36789999999999999999999 99999999999544 33322      24566789999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +|++++.|+.|++||+++++..    ..+..|...          ...+......+++.+|++|+ |+.|++||+.+ ++
T Consensus       206 ~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~  270 (312)
T 4ery_A          206 YILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KE  270 (312)
T ss_dssp             EEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCTTSCEEEEETTT-CC
T ss_pred             EEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCC-ch
Confidence            9999999999999999988654    555553110          11223333446788999986 59999999987 88


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG  400 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~  400 (487)
                      .+..+.+|...+               .+++|+|++++|++++  .|+.|++|+..
T Consensus       271 ~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          271 IVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence            889999888754               6999999999999987  69999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-33  Score=268.20  Aligned_cols=285  Identities=15%  Similarity=0.202  Sum_probs=219.1

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..+....|+|++++|++|+.||.|++||+.+++.                           ...+.+|.           
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~h~-----------  139 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ---------------------------REIDQAHV-----------  139 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE---------------------------EEETTSSS-----------
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce---------------------------eeeccccc-----------
Confidence            4566668899999999999999999999876643                           46677898           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       ..|.+++|  +|++++|++++.|+.|++||+.+++....                                        
T Consensus       140 -~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----------------------------------------  176 (420)
T 3vl1_A          140 -SEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPRT----------------------------------------  176 (420)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCEE----------------------------------------
T ss_pred             -CccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCceE----------------------------------------
Confidence             89999999  57899999999999999999998764433                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE------------
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA------------  259 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v------------  259 (487)
                             +.+|...|.+++|+|++++|+++ .|+.|++||++++ .....+..    ...+...+.++            
T Consensus       177 -------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~  244 (420)
T 3vl1_A          177 -------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNR----KENPHDGVNSIALFVGTDRQLHE  244 (420)
T ss_dssp             -------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECB----TTBTTCCEEEEEEEECCCSSCGG
T ss_pred             -------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeec----CCCCCCCccEEEEecCCcceeee
Confidence                   36899999999999999999999 9999999999944 44444321    12344444444            


Q ss_pred             ---------EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEE
Q 011368          260 ---------EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL  329 (487)
Q Consensus       260 ---------~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~  329 (487)
                               +|+|++ .+|++++.||.|++||+++++..    ..+..            .|...|.+++|+|++. +|+
T Consensus       245 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~l~  307 (420)
T 3vl1_A          245 ISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLPS------------KFTCSCNSLTVDGNNANYIY  307 (420)
T ss_dssp             GCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEECC------------TTSSCEEEEEECSSCTTEEE
T ss_pred             cccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEccc------------ccCCCceeEEEeCCCCCEEE
Confidence                     456888 89999999999999999987643    22221            3467899999999999 888


Q ss_pred             EEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc----
Q 011368          330 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----  404 (487)
Q Consensus       330 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~----  404 (487)
                      +|+ ||.|++||+++...++..+..|....              +..+ +.+++++|++++.||.|++|++.....    
T Consensus       308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~  372 (420)
T 3vl1_A          308 AGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSIKLDIISDPESERPA  372 (420)
T ss_dssp             EEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCE
T ss_pred             EEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccc
Confidence            886 59999999997555677777643321              1355 556888999999999999999987422    


Q ss_pred             ----eeEEEeccCCccccceEeeCCc--cccccccceeeecccce-ecCCC
Q 011368          405 ----GGITVEAGKNENRKPILQAAPR--ARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       405 ----~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                          ....+..|...+..++|+|...  +.+     +++| .++. .+|+.
T Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-----~a~g-~~g~~~~~~~  417 (420)
T 3vl1_A          373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEV-----LEVG-KNNFCALYNL  417 (420)
T ss_dssp             ECTTSCEEECCSSCCCCEEEEECCSSSSCEE-----EEEE-TTTEEEEEES
T ss_pred             eeccCccEEccCCcceEEEEEccCCCCcceE-----EEEc-CCceEEEEec
Confidence                2445678899999999999422  123     4555 4455 77744

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-33  Score=292.05  Aligned_cols=365  Identities=13%  Similarity=0.131  Sum_probs=271.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|..+|++++|+|++++|++|+.||.|+|||+.+++.                           ...+.+|.        
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------------------~~~~~~~~--------   97 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK---------------------------VVDFEAHP--------   97 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS--------
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEecCC--------
Confidence            4889999999999999999999999999999887754                           57788898        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          +.|.+++|  +|++.+|++++.|+.|++||+.++.............+.++.+.+.++..++.+..+...    ..
T Consensus        98 ----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v----~v  167 (814)
T 3mkq_A           98 ----DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV----KV  167 (814)
T ss_dssp             ----SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE----EE
T ss_pred             ----CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE----EE
Confidence                89999999  578999999999999999999887433333334556688888887566666655544432    23


Q ss_pred             eec--cceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          190 WTE--NMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       190 ~~~--~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                      |+.  ......+...+...+.+++|+|  ++++|+++ .|+.|++||+.++ .....       +.+|...|.+++|+|+
T Consensus       168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~-------~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT-------LEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEE-------EECCSSCEEEEEECSS
T ss_pred             EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEE-------EcCCCCCEEEEEEcCC
Confidence            432  3333344345568999999999  99999999 9999999999844 44432       4678899999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC--EEEEEeCCeEEEEeCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIR  342 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~d~~i~iwd~~  342 (487)
                      + .+|++++.||.|++||+.+++..    ..+..             |...+.+++|+|++.  +++++.++.+.+|++.
T Consensus       240 ~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          240 L-PIIISGSEDGTLKIWNSSTYKVE----KTLNV-------------GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCSEE----EEECC-------------SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred             C-CEEEEEeCCCeEEEEECCCCcEE----EEeec-------------CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence            9 99999999999999999987644    44444             357899999999987  5777888899999986


Q ss_pred             CCCceeeeeecccccccc-----------------cccccC-----------CCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368          343 MDSTPVATFKIHEHLRPK-----------------LCDLYN-----------NDSIFDKFECSVSGDGLHFATGSYSNLL  394 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~s~d~~~l~sg~~dg~i  394 (487)
                      . ..+...+......+..                 ......           ......+.+++|+|+|++|++++ |+.+
T Consensus       302 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~  379 (814)
T 3mkq_A          302 N-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEY  379 (814)
T ss_dssp             C-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEE
T ss_pred             C-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEE
Confidence            5 3322222111000000                 000000           00111236999999999999988 8999


Q ss_pred             EEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCC--
Q 011368          395 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTT--  471 (487)
Q Consensus       395 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~--  471 (487)
                      .+|++.....      .+.+.+..++|+|  +++.     ++++..++. ++|+      ...++...|..++|+||+  
T Consensus       380 ~i~~~~~~~~------~~~~~i~~~~~sp--dg~~-----la~~~~~g~v~l~~------~~~~~~~~v~~~~~s~dg~~  440 (814)
T 3mkq_A          380 VIYTALAWRN------KAFGKCQDFVWGP--DSNS-----YALIDETGQIKYYK------NFKEVTSWSVPMHSAIDRLF  440 (814)
T ss_dssp             EEEETTTTEE------EEEEECSEEEECT--TSSC-----EEEECTTCCEEEEE------TTEECTTCCCCCSSCCCEEE
T ss_pred             EEEECccccc------cCCCceEEEEEeC--CCCe-----EEEEeCCCcEEEEE------CCCCccceEEcCCcCcccee
Confidence            9999864422      2345677889987  6777     899999998 9994      234566788899999998  


Q ss_pred             -CEEEEec-CCeEEEEe
Q 011368          472 -NLIACAN-GNSLFFHY  486 (487)
Q Consensus       472 -~~la~~s-~~~~~i~~  486 (487)
                       ..|++++ ++.+++|+
T Consensus       441 ~~~l~~~~~d~~v~~~d  457 (814)
T 3mkq_A          441 SGALLGVKSDGFVYFFD  457 (814)
T ss_dssp             CSSSEEEEETTEEEEEC
T ss_pred             cceEEEEecCCEEEEEE
Confidence             4666555 66799986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=297.71  Aligned_cols=258  Identities=15%  Similarity=0.203  Sum_probs=205.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .+|.+.|++++|+|++++|++|+.||.|+||++.++                         ..+....+.+|.       
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------------~~~~~~~l~~h~-------   53 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE-------   53 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-------------------------EEEEEEEECCCS-------
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-------------------------CCccceeccCCc-------
Confidence            468999999999999999999999999999998754                         234567889998       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           +.|.+++|+|..++.+|++|+.||.|++||+.+++.....                                   
T Consensus        54 -----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~-----------------------------------   93 (753)
T 3jro_A           54 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA-----------------------------------   93 (753)
T ss_dssp             -----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE-----------------------------------
T ss_pred             -----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc-----------------------------------
Confidence                 9999999964444899999999999999999987532221                                   


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--  263 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--  263 (487)
                                .+.+|...|.+++|+|+  ++.+++| .|+.|++||++.......      ..+.+|...|.+++|+|  
T Consensus        94 ----------~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~------~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           94 ----------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------IIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             ----------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC------EEEECCSSCEEEEEECCCC
T ss_pred             ----------cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce------eEeecCCCceEEEEecCcc
Confidence                      13689999999999999  9999999 999999999986533221      12467889999999999  


Q ss_pred             -----------CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC---CCEEE
Q 011368          264 -----------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLL  329 (487)
Q Consensus       264 -----------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~  329 (487)
                                 ++ .++++++.||.|++||++++.........+.             +|...|.+++|+|+   +++|+
T Consensus       158 ~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-------------~h~~~V~~l~~sp~~~~~~~l~  223 (753)
T 3jro_A          158 IEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------------GHSDWVRDVAWSPTVLLRSYLA  223 (753)
T ss_dssp             ---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEEC-------------CCSSCEEEEEECCCCSSSEEEE
T ss_pred             cccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeec-------------CCCCcEEEEEeccCCCCCCEEE
Confidence                       46 8999999999999999998753222223333             45889999999999   89999


Q ss_pred             EEe-CCeEEEEeCCCCCc----eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          330 SRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       330 s~~-d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      +++ ||.|++||++....    .......|...+               ++++|+|+|++|++|+.||.|++|++.++.
T Consensus       224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            986 69999999986321    122222233322               589999999999999999999999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.2e-34  Score=289.05  Aligned_cols=260  Identities=19%  Similarity=0.297  Sum_probs=205.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|++++|+|++++|++|+.||+|+|||+.+++.                           ...+.+|.      
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~---------------------------~~~~~~h~------  472 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS---------------------------TRRFVGHT------  472 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS------
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc---------------------------eeEEeCCC------
Confidence            456999999999999999999999999999999877653                           57788998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  ++++.+|++++.|++|++||...........                                 
T Consensus       473 ------~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---------------------------------  511 (694)
T 3dm0_A          473 ------KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISE---------------------------------  511 (694)
T ss_dssp             ------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECS---------------------------------
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeecc---------------------------------
Confidence                  89999999  5789999999999999999986543322210                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                 ...+|...|.+++|+|++  ..|+++ .|++|++||++.. ....       .+.+|...|++++|+|+
T Consensus       512 -----------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~-------~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          512 -----------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRS-------TLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             -----------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEE-------EECCCSSCEEEEEECTT
T ss_pred             -----------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEE-------EEcCCCCCEEEEEEeCC
Confidence                       025789999999999986  578888 9999999999844 3433       35789999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD  344 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~  344 (487)
                      + .+|++++.||.|++||+++++.+    ..+..              ...|.+++|+|++.+|+++.++.|++||+++ 
T Consensus       573 g-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~-  632 (694)
T 3dm0_A          573 G-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAATEHGIKIWDLES-  632 (694)
T ss_dssp             S-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEEETTEEEEEETTT-
T ss_pred             C-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEEcCCCEEEEECCC-
Confidence            9 99999999999999999988644    33333              3579999999999999999888899999987 


Q ss_pred             Cceeeeeecccccccccc----cccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          345 STPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +..+..+..+........    ..........+++++|+|||++|++|+.||.|+||++.
T Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            777776654332110000    00001112234689999999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=262.30  Aligned_cols=290  Identities=14%  Similarity=0.141  Sum_probs=211.7

Q ss_pred             ccccCcEEEEEEcCC---CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..|.+.|++++|+|+   |++|++|+.||.|+|||+.+...                         .....+.+|.    
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~----   86 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT----   86 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS----
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc----
Confidence            458999999999999   69999999999999999986322                         1236678888    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                              ..|.+++|  ++++++|++++.|+.|++||+.+++....                                 
T Consensus        87 --------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------------------------------  123 (368)
T 3mmy_A           87 --------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI---------------------------------  123 (368)
T ss_dssp             --------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------
T ss_pred             --------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee---------------------------------
Confidence                    89999999  57899999999999999999998875543                                 


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEe--CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                     ..|...|.+++|  +|++++|+++ .|+.|++||+++.. ....+       ..+ ..+.++.+.
T Consensus       124 ---------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~-------~~~-~~~~~~~~~  179 (368)
T 3mmy_A          124 ---------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVL-------QLP-ERCYCADVI  179 (368)
T ss_dssp             ---------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEE-------ECS-SCEEEEEEE
T ss_pred             ---------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEE-------ecC-CCceEEEec
Confidence                           578999999999  9999999999 99999999999544 33332       222 356666666


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE----EEEEe-CCeEE
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH----LLSRD-YMNLK  337 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~----l~s~~-d~~i~  337 (487)
                      +   ..+++++.++.+++|+++......   .....            .+...+..+.+.++...    +++++ ++.|+
T Consensus       180 ~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~  241 (368)
T 3mmy_A          180 Y---PMAVVATAERGLIVYQLENQPSEF---RRIES------------PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA  241 (368)
T ss_dssp             T---TEEEEEEGGGCEEEEECSSSCEEE---EECCC------------SCSSCEEEEEEEECTTSCEEEEEEEETTSEEE
T ss_pred             C---CeeEEEeCCCcEEEEEeccccchh---hhccc------------cccCCCceEEEcccCCCCCCeEEEecCCCcEE
Confidence            4   578889999999999998764321   11111            11234556666555443    77775 69999


Q ss_pred             EEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368          338 LWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       338 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      +||++...  ..+..+..|...........   ....+++++|+|++++|++|+.||.|++||+.++ .....+..|..+
T Consensus       242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~  317 (368)
T 3mmy_A          242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQ---DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQP  317 (368)
T ss_dssp             EEESSCSCHHHHSEEEECSEEC----CCCE---EECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSC
T ss_pred             EEecCCCCccccceeeeeeecccccccccc---cccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCCC
Confidence            99998622  45667777664210000000   0012369999999999999999999999999987 446666677776


Q ss_pred             cccceEeeCCccccccccceeeecccce
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGLYRQA  443 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~  443 (487)
                      +..++|+|  ++++     |++++.|+.
T Consensus       318 v~~~~~s~--~g~~-----l~~~s~d~~  338 (368)
T 3mmy_A          318 ISACCFNH--NGNI-----FAYASSYDW  338 (368)
T ss_dssp             EEEEEECT--TSSC-----EEEEECCCS
T ss_pred             ceEEEECC--CCCe-----EEEEecccc
Confidence            66666666  4555     666665543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=253.36  Aligned_cols=280  Identities=13%  Similarity=0.181  Sum_probs=221.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      ..++|+||+++ +||+| .|++|+|||+.+++..                         ....+.+|.            
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------   67 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------------------QLLQMEQPG------------   67 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            35789999886 77776 5999999999888642                         122345666            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.+++|  ++++++|++|+.|++|++||+.+++....                                         
T Consensus        68 ~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~-----------------------------------------  104 (318)
T 4ggc_A           68 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN-----------------------------------------  104 (318)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred             CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEE-----------------------------------------
Confidence            88999999  68899999999999999999999876544                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|...+.++.+  ++..++++ .++.+++|+..........       +.+|...+.++.+++++ .+|+++
T Consensus       105 ------~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~l~s~  168 (318)
T 4ggc_A          105 ------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDG-RHLASG  168 (318)
T ss_dssp             ------EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTS-SEEEEE
T ss_pred             ------ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEEEEEcCCC-CEEEEE
Confidence                  2678888877655  56799999 9999999999866555443       46889999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE---EEe-CCeEEEEeCCCCCcee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~---s~~-d~~i~iwd~~~~~~~~  348 (487)
                      +.|+.|++||+++++..........             .+...|..+.++|++..++   +++ ++.|++||... ....
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~  234 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFT-------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL  234 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEEC-------------CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEE
T ss_pred             ecCcceeEEECCCCcccccceeeec-------------ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-cccc
Confidence            9999999999998764322222222             3467899999999876544   233 49999999986 5544


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .....+...                ..+.|+|+++.+++++  .|+.|+|||+.++ ....++.+|.++|++++|+|  +
T Consensus       235 ~~~~~~~~v----------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~sp--d  295 (318)
T 4ggc_A          235 SAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSP--D  295 (318)
T ss_dssp             EEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECT--T
T ss_pred             ccccceeee----------------eeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcC--C
Confidence            444433321                5899999999887654  7999999999988 55789999999999999998  6


Q ss_pred             cccccccceeeecccce-ecCCCC
Q 011368          427 ARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      +++     |++|+.|+. ++|+..
T Consensus       296 g~~-----l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          296 GAT-----VASAAADETLRLWRCF  314 (318)
T ss_dssp             SSC-----EEEEETTTEEEEECCS
T ss_pred             CCE-----EEEEecCCeEEEEECC
Confidence            777     999999999 999664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-33  Score=265.42  Aligned_cols=250  Identities=15%  Similarity=0.242  Sum_probs=199.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |...|++++|+|++++|++|+.||.|++||+.+++.                           ...+.+|.         
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~---------  176 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---------------------------LRTMAGHQ---------  176 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS---------
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE---------------------------EEEecCCC---------
Confidence            788999999999999999999999999999877654                           57788898         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         ..|.+++|.    +.+|++++.|+.|++||+.... ....                                     
T Consensus       177 ---~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------  212 (401)
T 4aez_A          177 ---ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGT-------------------------------------  212 (401)
T ss_dssp             ---SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEE-------------------------------------
T ss_pred             ---CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeE-------------------------------------
Confidence               899999993    4699999999999999998433 2221                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +.+|...|.+++|+|++++|++| .|+.|++||+++.. ...       .+..|...|.+++|+|++..+
T Consensus       213 ----------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~-------~~~~~~~~v~~~~~~p~~~~l  274 (401)
T 4aez_A          213 ----------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKF-------TKTNHNAAVKAVAWCPWQSNL  274 (401)
T ss_dssp             ----------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEE-------EECCCSSCCCEEEECTTSTTE
T ss_pred             ----------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccE-------EecCCcceEEEEEECCCCCCE
Confidence                      36899999999999999999999 99999999999543 332       246788999999999987577


Q ss_pred             EEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE---eCCeEEEEeCCC
Q 011368          269 LAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DYMNLKLWDIRM  343 (487)
Q Consensus       269 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~---~d~~i~iwd~~~  343 (487)
                      +++++  .|+.|++||+++++..    ..+..              ...|.+++|+|++++++++   .++.|++||+.+
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            77765  7999999999987654    44443              4689999999999999984   269999999986


Q ss_pred             CCceeee--eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          344 DSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       344 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                       +.....  +.+|...+               ++++|+|++++|++++.||.|++|++.+++.....+..+
T Consensus       337 -~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  391 (401)
T 4aez_A          337 -SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPIT  391 (401)
T ss_dssp             -TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC-----------
T ss_pred             -ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccccccc
Confidence             444433  55666544               599999999999999999999999999886544433333

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.9e-33  Score=265.94  Aligned_cols=247  Identities=19%  Similarity=0.278  Sum_probs=206.6

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|+||+|+|+|++||+|+.||.|+|||+.+++.                           +..+.+|.       
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~---------------------------~~~~~~h~-------  189 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---------------------------LRNMTSHS-------  189 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-------
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE---------------------------EEEEeCCC-------
Confidence            35788899999999999999999999999999987654                           57889998       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|.    +.+|++++.|+.+++||.........                                    
T Consensus       190 -----~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~------------------------------------  224 (420)
T 4gga_A          190 -----ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVA------------------------------------  224 (420)
T ss_dssp             -----SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEE------------------------------------
T ss_pred             -----CceEEEeeC----CCEEEEEeCCCceeEeeecccceeeE------------------------------------
Confidence                 889998883    57999999999999999876542211                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                .+.+|...+..+.++|++++++++ .|+.+++|+...+......    ......|...|.+++|+|.+..
T Consensus       225 ----------~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~~V~~~~~~p~~~~  290 (420)
T 4gga_A          225 ----------TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKAVAWCPWQSN  290 (420)
T ss_dssp             ----------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSSCEEEEEECTTCTT
T ss_pred             ----------EecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCCceeeeeeCCCccc
Confidence                      137899999999999999999999 9999999999855432111    1134678899999999998867


Q ss_pred             EEEEE--eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---CCeEEEEeCC
Q 011368          268 LLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIR  342 (487)
Q Consensus       268 ~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---d~~i~iwd~~  342 (487)
                      +++++  +.|+.|++||+++++..    ..+..              ...+.++.|+|+++.+++++   |+.|+|||+.
T Consensus       291 ~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          291 VLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             EEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             EEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            77765  46999999999998754    44444              36789999999999988753   5999999999


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      + ++++..+.+|...+               ++++|+|||++|++|+.|++|+|||+.+.
T Consensus       353 ~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          353 T-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             T-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             C-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            7 88999999998765               69999999999999999999999999865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-32  Score=264.69  Aligned_cols=272  Identities=12%  Similarity=0.194  Sum_probs=225.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|+|++|  ++++|++|+.||.|++||..+++.                           ...+.+|.        
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------------~~~~~~h~--------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------------KRILTGHT--------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------------EEEECCCS--------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------------EEEEcCCC--------
Confidence            35677999887  789999999999999999887654                           57788998        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          +.|.+++|    ++.+|++|+.||+|++||+.+++....                                     
T Consensus       174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~-------------------------------------  208 (435)
T 1p22_A          174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT-------------------------------------  208 (435)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-------------------------------------
T ss_pred             ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-------------------------------------
Confidence                88999998    578999999999999999998875543                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                +.+|...|.+++|++  ..+++| .|+.|++||+.+.......     ..+.+|...|.+++|  ++ .+
T Consensus       209 ----------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~v~~~~~--~~-~~  268 (435)
T 1p22_A          209 ----------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNVVDF--DD-KY  268 (435)
T ss_dssp             ----------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEEEEE--ET-TE
T ss_pred             ----------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEecCCCCcEEEEEe--CC-CE
Confidence                      368999999999974  588888 9999999999855432211     135689999999999  55 89


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      +++++.||.|++||+++++..    ..+..             |...|.++.++  +.++++|+ |+.|++||+++ +.+
T Consensus       269 l~s~~~dg~i~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~-~~~  328 (435)
T 1p22_A          269 IVSASGDRTIKVWNTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GAC  328 (435)
T ss_dssp             EEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCE
T ss_pred             EEEEeCCCeEEEEECCcCcEE----EEEcC-------------CCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC-CCE
Confidence            999999999999999987654    55555             47789999984  67888876 69999999997 888


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc--------eeEEEeccCCccccc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GGITVEAGKNENRKP  419 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~  419 (487)
                      +..+.+|...+               .+++|  ++++|++|+.||.|++||+.++..        ....+.+|..+|.++
T Consensus       329 ~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          329 LRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             EEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             EEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence            89998888754               57777  789999999999999999986541        578889999999999


Q ss_pred             eEeeCCccccccccceeeecccce-ecCCCC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      ++    ++..     +++|+.|+. ++|+..
T Consensus       392 ~~----~~~~-----l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          392 QF----DEFQ-----IVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EE----CSSC-----EEECCSSSEEEEEC--
T ss_pred             Ee----CCCE-----EEEEeCCCEEEEEECC
Confidence            98    3455     899999999 999654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.3e-33  Score=261.14  Aligned_cols=255  Identities=12%  Similarity=0.106  Sum_probs=191.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEE-----------ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec
Q 011368           30 QDVDIVSAIEFDKTGDYLAVG-----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ   98 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g-----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (487)
                      .|.+.|.+++++  ++.+++|           +.|+.+++|++.+.+.                       ..+......
T Consensus        71 ~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-----------------------~~~~~~~~~  125 (365)
T 4h5i_A           71 DNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVND-----------------------QLEFLTSVD  125 (365)
T ss_dssp             TTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-----------------------EEEEEEEEC
T ss_pred             CCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCc-----------------------eEEEeeeec
Confidence            467778888765  4566665           4577899999887643                       111222221


Q ss_pred             CCCcccccccccccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccc
Q 011368           99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (487)
Q Consensus        99 ~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (487)
                      ...       ....+..+.+++|  +|||+++++++  .|++|+|||+.+++....                        
T Consensus       126 ~~~-------~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~~------------------------  172 (365)
T 4h5i_A          126 FDA-------STNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKFE------------------------  172 (365)
T ss_dssp             SSC-------CCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEEE------------------------
T ss_pred             eee-------cCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEEE------------------------
Confidence            111       0111266889999  68999987654  789999999998876543                        


Q ss_pred             cCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368          177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  256 (487)
                                              ..|...|++++|+|||++++++.++.+.+|+..++......      ....|...|
T Consensus       173 ------------------------~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~------~~~~~~~~v  222 (365)
T 4h5i_A          173 ------------------------IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARK------TDFDKNWSL  222 (365)
T ss_dssp             ------------------------EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEE------CCCCTTEEE
T ss_pred             ------------------------eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeee------ecCCCCCCE
Confidence                                    35778899999999999999995556677777645543332      346788899


Q ss_pred             EEEEEecCCCCEEEEEeCCC----eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          257 TSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      .+++|+|++ ..+++++.|+    .+++|++............+             .+|...|++++|+|||++||+|+
T Consensus       223 ~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          223 SKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV-------------TNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE-------------ESSCSCEEEEEECTTSCEEEEEE
T ss_pred             EEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeee-------------cCCCCCeEeEEECCCCCceEEEc
Confidence            999999999 9999998877    68889988764321111223             34578999999999999999986


Q ss_pred             -CCeEEEEeCCCCCceeeee-ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          333 -YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       333 -d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                       |++|+|||+++ ++++..+ .+|...+               ++++|||||++||+||.|++|+||++...
T Consensus       289 ~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 NDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             59999999997 7887764 7888765               69999999999999999999999999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.2e-32  Score=251.82  Aligned_cols=254  Identities=19%  Similarity=0.270  Sum_probs=199.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+|+|++|++|+.|+.|++|+......                           ......+.       
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~---------------------------~~~~~~~~-------  128 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---------------------------TRRFVGHT-------  128 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce---------------------------eeeecCCC-------
Confidence            45889999999999999999999999999999776543                           34445555       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..+..+.+  .+++.+|++++.|+.+++||+........                                    
T Consensus       129 -----~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~~~------------------------------------  165 (340)
T 4aow_A          129 -----KDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKYTV------------------------------------  165 (340)
T ss_dssp             -----SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEE------------------------------------
T ss_pred             -----CceeEEEE--eecCccceeecCCCeEEEEEeCCCceEEE------------------------------------
Confidence                 66778888  57889999999999999999876543322                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                ...+|...+.+++|++++  .+++++ .|+.|++||++.. ....       .+.+|...|++++|+|++
T Consensus       166 ----------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~-------~~~~h~~~v~~~~~s~~~  227 (340)
T 4aow_A          166 ----------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKT-------NHIGHTGYLNTVTVSPDG  227 (340)
T ss_dssp             ----------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEE-------EECCCSSCEEEEEECTTS
T ss_pred             ----------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceee-------EecCCCCcEEEEEECCCC
Confidence                      136889999999998764  567788 9999999999944 4433       346899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS  345 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~  345 (487)
                       ++|++++.||.|++||+++.+.+    ..+..              ...+.++.|+|++.+++++.|+.|++||++. .
T Consensus       228 -~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~-~  287 (340)
T 4aow_A          228 -SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAATGPSIKIWDLEG-K  287 (340)
T ss_dssp             -SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEEETTEEEEEETTT-T
T ss_pred             -CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeeccCCCEEEEEECCC-C
Confidence             99999999999999999987654    44544              3679999999999888888899999999986 6


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ..+..+..+......   ..+..   .|++++|+|||++|++|+.||.|+|||+++|.
T Consensus       288 ~~~~~~~~~~~~~~~---~~h~~---~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          288 IIVDELKQEVISTSS---KAEPP---QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECCC----------CCCC---CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eEEEeccccceeeec---cCCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            666555432211000   00111   23699999999999999999999999999883

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-33  Score=258.62  Aligned_cols=250  Identities=15%  Similarity=0.115  Sum_probs=185.9

Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ..+.+|.            +.|.+++|  ++++++|++|+.|++|++||+.++.....                      
T Consensus         7 ~~~~~H~------------~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~----------------------   50 (316)
T 3bg1_A            7 TVDTSHE------------DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILI----------------------   50 (316)
T ss_dssp             -------------------CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEE----------------------
T ss_pred             eeccccc------------CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEE----------------------
Confidence            3466888            99999999  57899999999999999999987643211                      


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCC-ceeEEeecCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMD  250 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~  250 (487)
                                            .. +.+|...|++++|+|  ++++|++| .|++|++||++++. ....       .+.
T Consensus        51 ----------------------~~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------~~~  100 (316)
T 3bg1_A           51 ----------------------AD-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------EHA  100 (316)
T ss_dssp             ----------------------EE-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE-------EEC
T ss_pred             ----------------------EE-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE-------Ecc
Confidence                                  11 378999999999986  48999999 99999999998543 1221       356


Q ss_pred             CCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC----
Q 011368          251 DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----  324 (487)
Q Consensus       251 ~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~----  324 (487)
                      +|...|.+++|+|+  + .+|++++.|+.|++||++.+.... ....             +.+|...|.+++|+|+    
T Consensus       101 ~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-~~~~-------------~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A          101 GHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-VKKI-------------NNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             CCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-ECCB-------------TTSSSSCBCCCEECCCCCC-
T ss_pred             CCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-eeee-------------eccccCCcceEEEccccCCc
Confidence            89999999999998  6 899999999999999998753110 0022             2345788999999997    


Q ss_pred             -------------CCEEEEEe-CCeEEEEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCC----CE
Q 011368          325 -------------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LH  384 (487)
Q Consensus       325 -------------~~~l~s~~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~----~~  384 (487)
                                   +++|++|+ |+.|++||++...  .++..+.+|...+               ++++|+|++    ++
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTST  230 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCce
Confidence                         46888876 6999999997522  3566778887754               699999986    89


Q ss_pred             EEEEcCCCcEEEEEeCCCC---ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCC
Q 011368          385 FATGSYSNLLRIFSHGVGS---AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       385 l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      |++|+.|++|+||++.+..   .....+..|...+..++|+|  ++..     |++++.|+. ++|+
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----las~~~D~~v~lw~  290 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TANI-----LAVSGGDNKVTLWK  290 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TTCC-----EEEEESSSCEEEEE
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CCCE-----EEEEcCCCeEEEEE
Confidence            9999999999999998631   12334556666666666666  4455     666666666 6663

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.3e-32  Score=264.49  Aligned_cols=294  Identities=15%  Similarity=0.185  Sum_probs=222.9

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|.+.|++++|+|++ +|++|+.||+|++||+.+++.                           ...+.+|.        
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~---------------------------~~~~~~h~--------  203 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC---------------------------THVFEGHN--------  203 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS--------
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE---------------------------EEEECCCC--------
Confidence            589999999999988 999999999999999887653                           57788998        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..|.+++|++.+++.++++++.|++|++||+.++..............  . +..+..                  
T Consensus       204 ----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~-~~~~~~------------------  258 (464)
T 3v7d_B          204 ----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--V-FHTPEE------------------  258 (464)
T ss_dssp             ----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE--E-ESCGGG------------------
T ss_pred             ----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce--E-eeccCC------------------
Confidence                899999998878889999999999999999987754432111110000  0 000000                  


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                        ...... .+.+|...|.++  ++++++++++ .|+.|++||+.+ ......       +.+|...|.+++|+|++ .+
T Consensus       259 --~~~~~~-~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~-~~  324 (464)
T 3v7d_B          259 --NPYFVG-VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYI-------LSGHTDRIYSTIYDHER-KR  324 (464)
T ss_dssp             --CTTEEE-EECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT-TEEEEE-------ECCCSSCEEEEEEETTT-TE
T ss_pred             --CeEEEE-EccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC-CcEEEE-------ecCCCCCEEEEEEcCCC-CE
Confidence              000111 237888888887  5678999999 999999999984 444432       46789999999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      +++++.||.|++||+++++..    ..+..             |...|.++.|+  +.+|++++ ||.|++||+.+ ...
T Consensus       325 l~sg~~dg~i~vwd~~~~~~~----~~~~~-------------h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~  384 (464)
T 3v7d_B          325 CISASMDTTIRIWDLENGELM----YTLQG-------------HTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSR  384 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCE
T ss_pred             EEEEeCCCcEEEEECCCCcEE----EEEeC-------------CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cce
Confidence            999999999999999988754    55555             47899999998  47888875 69999999986 444


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  427 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  427 (487)
                      ..... +....               ..++|+|++++|++|+ ||.|++||+.+++.....+..|...+.+++++   +.
T Consensus       385 ~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~---~~  444 (464)
T 3v7d_B          385 KFSYH-HTNLS---------------AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK---GK  444 (464)
T ss_dssp             EEEEE-CTTCC---------------CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE---TT
T ss_pred             eeeec-CCCCc---------------cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec---CC
Confidence            44443 22211               3789999999999998 89999999999865544577889999999996   33


Q ss_pred             ccccccceeeecccce
Q 011368          428 RRSSLSNLTRGLYRQA  443 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~  443 (487)
                      .+     +++++.++.
T Consensus       445 ~l-----~~~~~~~g~  455 (464)
T 3v7d_B          445 TL-----VAAVEKDGQ  455 (464)
T ss_dssp             EE-----EEEEEETTE
T ss_pred             EE-----EEEEEeCCe
Confidence            33     566666665

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-33  Score=264.69  Aligned_cols=263  Identities=14%  Similarity=0.183  Sum_probs=202.7

Q ss_pred             ccCcEEEEEEcCC----CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        31 h~~~V~~~~~s~~----~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++.                           +..+.+|.     
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---------------------------~~~~~~~~-----  115 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC---------------------------IKHYVGHG-----  115 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE---------------------------EEEEESCC-----
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE---------------------------eeeecCCC-----
Confidence            6678999999999    67999999999999999886653                           57788898     


Q ss_pred             ccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                             ..|.+++|+  | ++.+|++++.|+.|++||+.+++......                               
T Consensus       116 -------~~i~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------  155 (366)
T 3k26_A          116 -------NAINELKFH--PRDPNLLLSVSKDHALRLWNIQTDTLVAIFG-------------------------------  155 (366)
T ss_dssp             -------SCEEEEEEC--SSCTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred             -------CcEEEEEEC--CCCCCEEEEEeCCCeEEEEEeecCeEEEEec-------------------------------
Confidence                   899999994  6 78999999999999999999876554310                               


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeec--------------------
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--------------------  244 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--------------------  244 (487)
                                   .+.+|...|.+++|+|++++|+++ .|+.|++||+++... ...+..                    
T Consensus       156 -------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (366)
T 3k26_A          156 -------------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM-MNAIKESYDYNPNKTNRPFISQKIHF  221 (366)
T ss_dssp             -------------STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH-HHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred             -------------ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc-ccccceeEEecCCCCcccccceeecc
Confidence                         015789999999999999999999 999999999984322 110000                    


Q ss_pred             -CCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          245 -KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       245 -~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                       .......|...|.+++|+  + .+|++++.|+.|++||++++....   ..+..+.........+..|...|.+++|+|
T Consensus       222 ~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  295 (366)
T 3k26_A          222 PDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTILGRFDYSQCDIWYMRFSM  295 (366)
T ss_dssp             CSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred             CccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchheeccccccCCcEEEEEEcC
Confidence             001223488999999999  5 799999999999999998865321   111111111122233556788999999999


Q ss_pred             C--CCEEEEEe-CCeEEEEeCCCCCce----eeeeecc--cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368          324 D--GQHLLSRD-YMNLKLWDIRMDSTP----VATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  394 (487)
Q Consensus       324 ~--~~~l~s~~-d~~i~iwd~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i  394 (487)
                      +  +++|++++ ||.|++||+.. +.+    ...+..|  ...               |++++|+|++++|++++.||.|
T Consensus       296 ~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~s~~~dg~i  359 (366)
T 3k26_A          296 DFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAA---------------IRQTSFSRDSSILIAVCDDASI  359 (366)
T ss_dssp             CTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSC---------------EEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCc---------------eEEEEeCCCCCeEEEEeCCCEE
Confidence            9  99999986 59999999986 443    3356666  232               2699999999999999999999


Q ss_pred             EEEEeCC
Q 011368          395 RIFSHGV  401 (487)
Q Consensus       395 ~iwd~~~  401 (487)
                      ++||+.+
T Consensus       360 ~iwd~~~  366 (366)
T 3k26_A          360 WRWDRLR  366 (366)
T ss_dssp             EEEEC--
T ss_pred             EEEEecC
Confidence            9999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=260.68  Aligned_cols=312  Identities=15%  Similarity=0.211  Sum_probs=220.2

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      ...+.+|.            +.|.+++|  +| ++++|++++.||.|++||+.++............             
T Consensus        36 ~~~~~~h~------------~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------------   88 (408)
T 4a11_B           36 RDVERIHG------------GGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC-------------   88 (408)
T ss_dssp             EEECCCCS------------SCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE-------------
T ss_pred             eeeeeccC------------CcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc-------------
Confidence            46778898            99999999  57 8999999999999999999887543321100000             


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                           ........+|...|.+++|+| ++++|+++ .|+.|++||+.+ ......+        
T Consensus        89 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~--------  138 (408)
T 4a11_B           89 ---------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVF--------  138 (408)
T ss_dssp             ---------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEE--------
T ss_pred             ---------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceec--------
Confidence                                 000000246999999999999 78899998 999999999994 4444332        


Q ss_pred             CCCCcEEEEEEecCCC--CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-
Q 011368          251 DLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-  327 (487)
Q Consensus       251 ~~~~~v~~v~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-  327 (487)
                      .+...+.++.|+|.++  .++++++.|+.|++||+++++..    ..+..             |...|.+++|+|++++ 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l  201 (408)
T 4a11_B          139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HILQG-------------HRQEILAVSWSPRYDYI  201 (408)
T ss_dssp             ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EEECC-------------CCSCEEEEEECSSCTTE
T ss_pred             cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----eeecC-------------CCCcEEEEEECCCCCcE
Confidence            3567789999998541  49999999999999999987644    45555             4789999999999984 


Q ss_pred             EEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          328 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       328 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      +++++ |+.|++||++.....+..+..+..................+++++|+|++++|++++.||.|++||+.+++...
T Consensus       202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (408)
T 4a11_B          202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL  281 (408)
T ss_dssp             EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred             EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence            77775 59999999987554666654333211110000000111124699999999999999999999999999875432


Q ss_pred             EEEecc--CCcccc--ceEeeCCccccccccceeeecccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368          407 ITVEAG--KNENRK--PILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       407 ~~~~~~--~~~v~~--~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~  479 (487)
                       .+..+  ......  ...... ....     ++.++.++. .+|  ..++......+|...|.+++|+|++++|++++.
T Consensus       282 -~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  354 (408)
T 4a11_B          282 -VNYGKVCNNSKKGLKFTVSCG-CSSE-----FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR  354 (408)
T ss_dssp             -CCCCCCCCCCSSCCCCEECCS-SSSC-----EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             -eccccccccccccceeEEecC-CCce-----EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence             22111  111111  222221 1122     666777777 999  445556666789999999999999999999996


Q ss_pred             Ce-EEEEe
Q 011368          480 NS-LFFHY  486 (487)
Q Consensus       480 ~~-~~i~~  486 (487)
                      |+ +++|+
T Consensus       355 dg~i~iw~  362 (408)
T 4a11_B          355 DCNILAWV  362 (408)
T ss_dssp             TSCEEEEE
T ss_pred             CCeEEEEe
Confidence            65 99996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-32  Score=258.92  Aligned_cols=253  Identities=12%  Similarity=0.141  Sum_probs=201.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|++++|+|++++|++|+.||.|++||+.+++.                         .....+..|.        
T Consensus        50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~--------   96 (372)
T 1k8k_C           50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN--------   96 (372)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS--------
T ss_pred             CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------eeeEEeecCC--------
Confidence            5889999999999999999999999999999987742                         1234456677        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..|.+++|  ++++.+|++++.|+.|++||+..+.....                                     
T Consensus        97 ----~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-------------------------------------  133 (372)
T 1k8k_C           97 ----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWV-------------------------------------  133 (372)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEE-------------------------------------
T ss_pred             ----CceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCccee-------------------------------------
Confidence                88999999  57899999999999999999987753211                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC-----------------CCceeEEeecCCCCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~  251 (487)
                            ...+..+|...|.+++|+|++++|+++ .|+.|++||++.                 .+....       .+.+
T Consensus       134 ------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  200 (372)
T 1k8k_C          134 ------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-------ESSS  200 (372)
T ss_dssp             ------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-------ECCC
T ss_pred             ------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-------ecCC
Confidence                  011136789999999999999999999 999999999642                 223332       3567


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      |...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..             |...|.+++|+|++++|+++
T Consensus       201 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          201 SCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----ATLAS-------------ETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EEEEC-------------SSCCEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EEEcc-------------CCCCeEEEEEecCCCEEEEE
Confidence            88999999999999 99999999999999999987654    55555             36789999999999999999


Q ss_pred             eCCeEEEEeCCCC-C--ceeee------------------------------------e-ecccccccccccccCCCCcc
Q 011368          332 DYMNLKLWDIRMD-S--TPVAT------------------------------------F-KIHEHLRPKLCDLYNNDSIF  371 (487)
Q Consensus       332 ~d~~i~iwd~~~~-~--~~~~~------------------------------------~-~~~~~~~~~~~~~~~~~~~~  371 (487)
                      .|+.|++|++... +  ..+..                                    + .+|..               
T Consensus       263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------------  327 (372)
T 1k8k_C          263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN---------------  327 (372)
T ss_dssp             TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS---------------
T ss_pred             eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC---------------
Confidence            8899999999751 1  11111                                    1 12332               


Q ss_pred             eeeEEEEc-CCC---CEEEEEcCCCcEEEEEeCCCCc
Q 011368          372 DKFECSVS-GDG---LHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       372 ~~~~~~~s-~d~---~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      .|++++|+ ++|   ++|++|+.||.|++|++.+++.
T Consensus       328 ~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          328 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             CcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence            23689866 677   9999999999999999987643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=273.20  Aligned_cols=297  Identities=10%  Similarity=0.052  Sum_probs=206.9

Q ss_pred             cccCcEEEEEEcCC------CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368           30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (487)
Q Consensus        30 ~h~~~V~~~~~s~~------~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (487)
                      .|.+.|++++|+|+      +.+||+|+.||+|+|||+.+++.....     .           ....+....+.+|.  
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~-----~-----------~~~~~p~~~l~~h~--  266 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV-----F-----------KMCEKPSLTLSLAD--  266 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-----E-----------ECCCSCSEEECCTT--
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-----c-----------eeecCceEEEEcCC--
Confidence            45788999999997      579999999999999999876431000     0           00011234678888  


Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                                ..|.+++|+  ++ ..|++|+.||+|++||+.++.....                               
T Consensus       267 ----------~~v~sv~~s--~~-~~lasgs~DgtV~lWD~~~~~~~~~-------------------------------  302 (524)
T 2j04_B          267 ----------SLITTFDFL--SP-TTVVCGFKNGFVAEFDLTDPEVPSF-------------------------------  302 (524)
T ss_dssp             ----------TCEEEEEES--SS-SEEEEEETTSEEEEEETTBCSSCSE-------------------------------
T ss_pred             ----------CCEEEEEec--CC-CeEEEEeCCCEEEEEECCCCCCceE-------------------------------
Confidence                      899999995  43 4899999999999999986532110                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEE--EeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC--CcEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSI--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVIT  257 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~  257 (487)
                                     .+.+|...|+++  +|+|++ ++|++| .|++|++||+++... ...       +.+|.  ..|.
T Consensus       303 ---------------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~-------~~~~~~~~~v~  359 (524)
T 2j04_B          303 ---------------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKT-------TVSRFRGSNLV  359 (524)
T ss_dssp             ---------------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCE-------EEEECSCCSCC
T ss_pred             ---------------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccc-------cccccccCccc
Confidence                           137899999999  578887 899999 999999999985432 221       22343  2478


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeE
Q 011368          258 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  336 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i  336 (487)
                      +++|+|++ ..+++++.|+.|++||++++...    ..+.+             |...|++++|+|+|++|++|+ |++|
T Consensus       360 ~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~~l~g-------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          360 PVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----HPLVS-------------RETTITAIGVSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             CEEEETTT-TEEEEECSSSEEEEEETTCTTCC----EEEEE-------------CSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred             ceEeCCCc-CeEEEeCCCCcEEEEECcccccc----eeeec-------------CCCceEEEEeCCCCCeEEEEECCCEE
Confidence            99999998 89999999999999999987643    44445             578999999999999999986 5999


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      ++||+..  +.+...+......          ....+++++|+|+++.+. ...+  +.+|+....+.....+.+|..+|
T Consensus       422 ~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V  486 (524)
T 2j04_B          422 IITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINI  486 (524)
T ss_dssp             ECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSC
T ss_pred             EEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceE
Confidence            9999864  2322221111000          001125899999998553 3322  33444432234677899999999


Q ss_pred             ccceEeeCCc-cccccccceeeecccce-ecCCCC
Q 011368          417 RKPILQAAPR-ARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       417 ~~~~~~~~~~-~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      .+++|+|..+ +..     +++|+.++. ++|...
T Consensus       487 ~~Vafsp~~~~~~~-----lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          487 TCTKWNETSAGGKC-----YAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCEEECCSTTTTTE-----EEEECTTSEEEEEECS
T ss_pred             EEEECCCCCCccHH-----HHhhccCceEEEEEcc
Confidence            9999999643 456     999999999 999553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-32  Score=258.60  Aligned_cols=293  Identities=14%  Similarity=0.187  Sum_probs=204.8

Q ss_pred             cccccCcEEEEEEcCC----C---CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368           28 ELQDVDIVSAIEFDKT----G---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~----~---~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (487)
                      ...|...|++++|+|+    +   ++|++++.||.|++|++.+++..                      .......+.+|
T Consensus        58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~  115 (397)
T 1sq9_A           58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------------------KKVIFEKLDLL  115 (397)
T ss_dssp             EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------------------CCEEEEEECCS
T ss_pred             EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------------------ccccceeeccc
Confidence            3458899999999999    9   99999999999999999887631                      11224666777


Q ss_pred             CcccccccccccccceeEEEEEec--CCCcE-EEEEeCCCcEEEEEccc------cceeEeeecCCCCceeeeecccccc
Q 011368          101 EPEFDYLKSLEIEEKINRVRWCAA--PNGSM-FILSTNDKTIKLWKVRD------QKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~I~~v~~~~~--~~~~~-l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      ....   .    ...|.+++|++.  +++.+ |++++.|+.|++||+..      ++......                 
T Consensus       116 ~~~~---~----~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------  171 (397)
T 1sq9_A          116 DSDM---K----KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP-----------------  171 (397)
T ss_dssp             CTTG---G----GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC-----------------
T ss_pred             cccc---C----CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC-----------------
Confidence            2000   0    178999999522  67889 99999999999999987      44322000                 


Q ss_pred             ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                     ...+   .........|...|.+++|+|++ +|+++ .|+.|++||+++. .....       +.
T Consensus       172 ---------------~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~-------~~  224 (397)
T 1sq9_A          172 ---------------TLEL---QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYN-------FE  224 (397)
T ss_dssp             ---------------EEEE---EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEE-------EE
T ss_pred             ---------------ccee---eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEE-------Ee
Confidence                           0000   00000014588899999999999 99999 9999999999854 44433       34


Q ss_pred             C---C---CCcEEEEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368          251 D---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  321 (487)
Q Consensus       251 ~---~---~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~  321 (487)
                      .   |   ...|.+++|+|++ .+|++++.|   +.|++||+++++..    ..+...............|...|.+++|
T Consensus       225 ~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             CCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEE
T ss_pred             ccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCccc----ceeccCcccccccccccccCCcEEEEEE
Confidence            4   7   8899999999999 999999999   99999999987644    4444300000000001115789999999


Q ss_pred             cCCCCEEEEEe-CCeEEEEeCCCCCceeeeee------cccccccccc---cccCCCCcceeeEEEEcCCC---------
Q 011368          322 ANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK------IHEHLRPKLC---DLYNNDSIFDKFECSVSGDG---------  382 (487)
Q Consensus       322 s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~s~d~---------  382 (487)
                      +|++++|++++ |+.|++||+++ ++.+..+.      .|......-.   .-.+..   .|++++|+|++         
T Consensus       300 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~v~~~~~~~~g~~~~~~~~~  375 (397)
T 1sq9_A          300 NDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLKKGWRSGMGADL  375 (397)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC---CEEEEEEECTTTSBSTTCTT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCC---ceeEEEeccccccccccccc
Confidence            99999999986 59999999987 78888888      5500000000   000011   23699999998         


Q ss_pred             -CEEEEEcCCCcEEEEEeCCC
Q 011368          383 -LHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       383 -~~l~sg~~dg~i~iwd~~~~  402 (487)
                       ++|++|+.||.|++|+++++
T Consensus       376 ~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          376 NESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCEEEEEETTTEEEEEEEEC-
T ss_pred             cceEEEecCCCcEEEEEcCCC
Confidence             79999999999999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.9e-32  Score=260.92  Aligned_cols=289  Identities=13%  Similarity=0.126  Sum_probs=215.5

Q ss_pred             cEEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        34 ~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ....++++|+...+ ++++.||.|+||++......                       .+....+.+|.           
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~-----------   81 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT-----------   81 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS-----------
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC-----------
Confidence            34568899887544 45788999999998554210                       11234578898           


Q ss_pred             ccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          113 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       113 ~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                       +.|.+++|  +| ++.+|++++.|++|++||+.++......                                      
T Consensus        82 -~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~--------------------------------------  120 (402)
T 2aq5_A           82 -APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--------------------------------------  120 (402)
T ss_dssp             -SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB--------------------------------------
T ss_pred             -CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc--------------------------------------
Confidence             99999999  46 7899999999999999999887432100                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                       ..+... +.+|...|.+++|+|++ ++|+++ .|+.|++||++++ .....+     ...+|...|.+++|+|++ .+|
T Consensus       121 -~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l  191 (402)
T 2aq5_A          121 -REPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVLTL-----GPDVHPDTIYSVDWSRDG-ALI  191 (402)
T ss_dssp             -CSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEEEE-----CTTTCCSCEEEEEECTTS-SCE
T ss_pred             -CCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccEEE-----ecCCCCCceEEEEECCCC-CEE
Confidence             011112 37899999999999998 689998 9999999999954 443321     115789999999999999 999


Q ss_pred             EEEeCCCeEEEEEccCCccccccceee-cccccccCcccccccccc-ceeEEEEcCCCCEEEEE----eCCeEEEEeCCC
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR----DYMNLKLWDIRM  343 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~----~d~~i~iwd~~~  343 (487)
                      ++++.||.|++||+++++..    ..+ ..|             .. .+.++.|+|++++|++|    .++.|++||++.
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVV----AEKDRPH-------------EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEE----EEEECSS-------------CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred             EEEecCCcEEEEeCCCCcee----eeeccCC-------------CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence            99999999999999987654    444 342             33 38999999999999998    469999999987


Q ss_pred             CCceeeeee-cccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEEeCCCCceeEEEec--cCCccccc
Q 011368          344 DSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEA--GKNENRKP  419 (487)
Q Consensus       344 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~  419 (487)
                      ...++.... .+...               +..++|+|++++|+ +|+.||.|++||+.+++.....+..  |..++..+
T Consensus       255 ~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~  319 (402)
T 2aq5_A          255 LEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM  319 (402)
T ss_dssp             CSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE
T ss_pred             ccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce
Confidence            443343333 22222               25899999999986 5668999999999988643445544  45899999


Q ss_pred             eEeeCCccccccccceeeecccce-ecCC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      +++|  ++.+     ++++.  +. ++|.
T Consensus       320 ~~sp--~~~~-----~~s~~--~~~~~~~  339 (402)
T 2aq5_A          320 GYMP--KRGL-----EVNKC--EIARFYK  339 (402)
T ss_dssp             EECC--GGGS-----CGGGT--EEEEEEE
T ss_pred             EEec--cccc-----ceecc--eeEEEEE
Confidence            9998  5555     55433  34 7773

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=255.09  Aligned_cols=257  Identities=17%  Similarity=0.212  Sum_probs=200.2

Q ss_pred             cccccCcEEEEEEcCC---CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      ...|...|++++|+|+   +++|++|+.||.|++||+.+++.                          ....+.+|.   
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~---  111 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------------PVYSVKGHK---  111 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------------CSEEECCCS---
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------------cEEEEEecc---
Confidence            3468899999999998   69999999999999999987752                          146788898   


Q ss_pred             ccccccccccceeEEEEEe----cCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeeccccccccccccCC
Q 011368          105 DYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                               ..|.+++|.+    ++++.+|++++.|+.|++||+..++ .......                        
T Consensus       112 ---------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------------  158 (357)
T 3i2n_A          112 ---------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP------------------------  158 (357)
T ss_dssp             ---------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC------------------------
T ss_pred             ---------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc------------------------
Confidence                     8899998864    5789999999999999999998775 2222100                        


Q ss_pred             CCcceeeeeeeeccceeeeecccCCCceeEEE----eCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368          180 PSFAHGYHLEWTENMATKVYPHAHDFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  254 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  254 (487)
                                         ....+...+.+++    |+|++++++++ .|+.|++||+++.. ...        ...|..
T Consensus       159 -------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~--------~~~~~~  210 (357)
T 3i2n_A          159 -------------------VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRW--------ETNIKN  210 (357)
T ss_dssp             -------------------CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEE--------EEECSS
T ss_pred             -------------------cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eee--------ecCCCC
Confidence                               0012244788888    78999999999 99999999999543 322        245778


Q ss_pred             cEEEEEEec---CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEE
Q 011368          255 VITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS  330 (487)
Q Consensus       255 ~v~~v~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s  330 (487)
                      .|.+++|+|   ++ .+|++++.||.|++||+++++..    ..+..        ..+.+|...|.+++|+|+++ +|++
T Consensus       211 ~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~  277 (357)
T 3i2n_A          211 GVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFAS--------VSEKAHKSTVWQVRHLPQNRELFLT  277 (357)
T ss_dssp             CEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEE--------EEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             ceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceee--------eccCCCcCCEEEEEECCCCCcEEEE
Confidence            999999999   88 99999999999999999986543    22221        01224678999999999998 7888


Q ss_pred             Ee-CCeEEEEeCCCCC------------------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcC
Q 011368          331 RD-YMNLKLWDIRMDS------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY  390 (487)
Q Consensus       331 ~~-d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~  390 (487)
                      ++ ||.|++||++...                  ..+..+..|...+               ++++|+|++++|+ +++.
T Consensus       278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI---------------SSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE---------------EEEEECSSSTTEEEEEET
T ss_pred             EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe---------------eEEEEcCCCCeEEEEecC
Confidence            76 5999999997522                  2355566665543               6999999999998 8999


Q ss_pred             CCcEEEEEeCCC
Q 011368          391 SNLLRIFSHGVG  402 (487)
Q Consensus       391 dg~i~iwd~~~~  402 (487)
                      ||.|++||+.+.
T Consensus       343 d~~i~iw~~~~~  354 (357)
T 3i2n_A          343 DQTVRVLIVTKL  354 (357)
T ss_dssp             TSEEEEEEECC-
T ss_pred             CCcEEEEECCCc
Confidence            999999999865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.6e-32  Score=258.68  Aligned_cols=261  Identities=13%  Similarity=0.161  Sum_probs=172.2

Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      +++.+|++++.|++|+|||...++......                                         .. .+.+|.
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~-----------------------------------------~~-~~~gH~  136 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHV-----------------------------------------LG-GKSGHH  136 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEE-----------------------------------------EC-TTTSCS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeee-----------------------------------------ec-ccCCCC
Confidence            456789999999999999999876543211                                         11 147999


Q ss_pred             CceeEEEeCC--------CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368          205 FNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       205 ~~v~~i~~s~--------~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                      +.|++++|+|        |+++|++| .|++|+|||+.+......        +.+|...|.+++|+|++..+|++++.|
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEECCCCCceEEecCCC
Confidence            9999999987        78999999 999999999985554443        346888999999999874689999999


Q ss_pred             CeEEEEEccCCccccccceeeccc--------ccccCccccccccccceeEEEEc-CCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          276 GFVRLVDMRQSALCDHSARILRDA--------AESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       276 g~i~iwd~~~~~~~~~~~~~~~~h--------~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      +.|++||+++++...........+        ...........+|...+.++.|+ |+++.|++++ |+.+++||+.. +
T Consensus       209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~  287 (393)
T 4gq1_A          209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA-N  287 (393)
T ss_dssp             SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc-C
Confidence            999999999876432111111100        00011112235688899999987 8999999986 59999999986 5


Q ss_pred             ceeeeeecccccccccc------cccCCCCcceeeEEEEcC--CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccc
Q 011368          346 TPVATFKIHEHLRPKLC------DLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  417 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~s~--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  417 (487)
                      .....+..+...+....      ........   ....++|  ++.++++|+.||.|+|||+.+++.. .          
T Consensus       288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~----------  353 (393)
T 4gq1_A          288 NDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-S----------  353 (393)
T ss_dssp             ----------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-E----------
T ss_pred             CCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-E----------
Confidence            55555554443221110      00001111   1344554  4557788899999999999877331 1          


Q ss_pred             cceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          418 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                                                          ...+|..+|.+++|||||++||+++++++.+|.
T Consensus       354 ------------------------------------~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          354 ------------------------------------IPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             ------------------------------------EEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             ------------------------------------EecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                                                112345589999999999999999999999886

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.7e-32  Score=253.12  Aligned_cols=268  Identities=9%  Similarity=0.035  Sum_probs=213.5

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      +.|.+++|+  |++.+|++++.|+.|++|++..+.....                                         
T Consensus        12 ~~v~~~~~s--~~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------------------------------   48 (342)
T 1yfq_A           12 DYISDIKII--PSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------------------------------   48 (342)
T ss_dssp             SCEEEEEEE--GGGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------------
T ss_pred             CcEEEEEEc--CCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------------------
Confidence            899999995  6789999999999999999987751110                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEc-cCCCceeEEeecCCCCCCC--CCCcEEEEEEecCCCCE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCNL  268 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~  268 (487)
                        ... ..+|...|.+++|+|+++ +|+++ .|+.|++||+ ... ...        .+.+  |...|.+++|+| + .+
T Consensus        49 --~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~--------~~~~~~~~~~v~~l~~~~-~-~~  114 (342)
T 1yfq_A           49 --LLQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SFQ--------ALTNNEANLGICRICKYG-D-DK  114 (342)
T ss_dssp             --EEE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SEE--------ECBSCCCCSCEEEEEEET-T-TE
T ss_pred             --cee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ceE--------eccccCCCCceEEEEeCC-C-CE
Confidence              001 257899999999999999 99999 9999999999 743 332        2466  999999999999 7 99


Q ss_pred             EEEEeCCCeEEEEEccC---------CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEE
Q 011368          269 LAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL  338 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~i  338 (487)
                      |++++.|+.|++||+++         ++..    ..+.              |...|.+++|+|++  ++++ .++.|++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~--------------~~~~v~~~~~~~~~--l~~~~~d~~i~i  174 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTK--------------VKNKIFTMDTNSSR--LIVGMNNSQVQW  174 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSS--------------SCCCEEEEEECSSE--EEEEESTTEEEE
T ss_pred             EEEEcCCCeEEEEcccccccccccccCCee----eEEe--------------eCCceEEEEecCCc--EEEEeCCCeEEE
Confidence            99999999999999986         4322    2222              36789999999988  5555 5699999


Q ss_pred             EeCCC-CCceee-eeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeCCC-----CceeEEEe
Q 011368          339 WDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG-----SAGGITVE  410 (487)
Q Consensus       339 wd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~  410 (487)
                      ||++. ...... ....+...               +.+++|+| ++++|++++.||.|++|++...     ......+.
T Consensus       175 ~d~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          175 FRLPLCEDDNGTIEESGLKYQ---------------IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             EESSCCTTCCCEEEECSCSSC---------------EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             EECCccccccceeeecCCCCc---------------eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence            99986 333222 22233332               26999999 9999999999999999999887     36678888


Q ss_pred             ccCC---------ccccceEeeCCccccccccceeeecccce-ecCCC--CCcccccccc-CCCeEEEEEcCCCCEEEEe
Q 011368          411 AGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNL-SSKLLHLAWHPTTNLIACA  477 (487)
Q Consensus       411 ~~~~---------~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~-~~~v~~~~~spd~~~la~~  477 (487)
                      .|..         ++.+++++|  ++.+     |++|+.|+. ++|+.  ++.......| ...|.+++  |++++|+++
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~  310 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA  310 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred             cccccccccccceeEEEEEEcC--CCCE-----EEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence            8866         899999998  6667     999999999 99944  4445566677 89999999  999999999


Q ss_pred             cCCeE
Q 011368          478 NGNSL  482 (487)
Q Consensus       478 s~~~~  482 (487)
                      +.|+.
T Consensus       311 s~Dg~  315 (342)
T 1yfq_A          311 TSDDT  315 (342)
T ss_dssp             EECTH
T ss_pred             ecCCc
Confidence            96653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-31  Score=270.02  Aligned_cols=329  Identities=14%  Similarity=0.115  Sum_probs=238.7

Q ss_pred             cccC---cEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-c---CCC
Q 011368           30 QDVD---IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-Q---SHE  101 (487)
Q Consensus        30 ~h~~---~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~  101 (487)
                      .|..   .|++++|+|+ +++|++|+.||.|++||+.+++.                           +..+ .   +|.
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~~~~~~  253 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---------------------------LKYIEDDQEPVQ  253 (615)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---------------------------EEECCBTTBCCC
T ss_pred             ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE---------------------------eEEecccccccC
Confidence            4777   8999999999 99999999999999999887654                           3555 4   787


Q ss_pred             cccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC---CCCceeeeeccccccccccccC
Q 011368          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD---HFPFVSSENTLLAEKNFMNEHN  178 (487)
Q Consensus       102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                                  ..|.+++|  + ++.+|++++.|+.|++||+.+++........   ....+..+.+.  ++..+..+.
T Consensus       254 ------------~~v~~~~~--~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~  316 (615)
T 1pgu_A          254 ------------GGIFALSW--L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLS  316 (615)
T ss_dssp             ------------SCEEEEEE--S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEE
T ss_pred             ------------CceEEEEE--c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEE
Confidence                        88999999  5 8899999999999999999988766554433   12333444442  444444443


Q ss_pred             CCCcceeeeeeeeccceeeee--------------------------------cccCCCceeEEEeCCCCCEEEEe-cCC
Q 011368          179 PPSFAHGYHLEWTENMATKVY--------------------------------PHAHDFNINSISNNSDCETFVSA-DDL  225 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~i~~s~~~~~l~s~-~d~  225 (487)
                      .+.........  .......+                                ..+|...|.+++| ++++.|+++ .|+
T Consensus       317 ~~g~i~~~d~~--~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~  393 (615)
T 1pgu_A          317 LDGTLNFYELG--HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDD  393 (615)
T ss_dssp             TTSCEEEEETT--EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTT
T ss_pred             CCCCEEEEECC--CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCC
Confidence            33322221110  01111111                                0345666666666 446677776 888


Q ss_pred             eEEEEEccCCC----------------------ceeEEeecCC---CCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEE
Q 011368          226 RINLWNLEISD----------------------QCFNIVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVR  279 (487)
Q Consensus       226 ~i~iwd~~~~~----------------------~~~~~~~~~~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~  279 (487)
                      .|++|++....                      ..+.+++...   .....+...+.+++|+  + .++++++. |+.|+
T Consensus       394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--Q-NYVAVGLEEGNTIQ  470 (615)
T ss_dssp             EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--S-SEEEEEETTTSCEE
T ss_pred             CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--C-CEEEEeecCCCeEE
Confidence            88888776311                      1111111100   0011366788999999  6 89999999 99999


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeec-cccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHL  357 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~-~~~~  357 (487)
                      +||+.+++...   ..             +.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+..+.+ |...
T Consensus       471 ~~~~~~~~~~~---~~-------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~  533 (615)
T 1pgu_A          471 VFKLSDLEVSF---DL-------------KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK  533 (615)
T ss_dssp             EEETTEEEEEE---EC-------------SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC
T ss_pred             EEECCCccccc---cc-------------cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc
Confidence            99998864320   12             234578999999999999999986 59999999987 788877776 7664


Q ss_pred             ccccccccCCCCcceeeEEEEcC----------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSG----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  427 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~----------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  427 (487)
                      +               ++++|+|          ++++|++|+.||.|++||+.++......+.+|...|.+++|+|..  
T Consensus       534 v---------------~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~--  596 (615)
T 1pgu_A          534 I---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--  596 (615)
T ss_dssp             E---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--
T ss_pred             e---------------eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC--
Confidence            4               6999999          999999999999999999998866788899999999999999952  


Q ss_pred             ccccccceeeecccce-ecCCC
Q 011368          428 RRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                           . |++++.|+. ++|+.
T Consensus       597 -----~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          597 -----T-LVSSGADACIKRWNV  612 (615)
T ss_dssp             -----E-EEEEETTSCEEEEEE
T ss_pred             -----C-eEEecCCceEEEEee
Confidence                 2 688999998 99943

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-31  Score=249.83  Aligned_cols=302  Identities=17%  Similarity=0.123  Sum_probs=204.5

Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ..+.+|.            +.|++++|  ++++.+|++++.|+.|++||+.++.....                      
T Consensus         5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------   48 (351)
T 3f3f_A            5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWE----------------------   48 (351)
T ss_dssp             CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEE----------------------
T ss_pred             ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcce----------------------
Confidence            4467888            99999999  57899999999999999999987542211                      


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCce-----eEEeecCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQC-----FNIVDMKP  246 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~-----~~~~~~~~  246 (487)
                                          .... +.+|...|.+++|+|  ++++|+++ .|+.|++||++.+...     ...+    
T Consensus        49 --------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----  103 (351)
T 3f3f_A           49 --------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL----  103 (351)
T ss_dssp             --------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE----
T ss_pred             --------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee----
Confidence                                1111 368999999999999  69999999 9999999999854310     0110    


Q ss_pred             CCCCCCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          247 SNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                      ..+.+|...|.+++|+|+  + .+|++++.||.|++||+++++..    ..+..............+|...+.+++|+|+
T Consensus       104 ~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  178 (351)
T 3f3f_A          104 CTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTLTSEMKVLSIPPANHLQSDFCLSWCPS  178 (351)
T ss_dssp             EEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred             eeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccccccccccccccCCcccceeEEEeccC
Confidence            135678999999999999  8 99999999999999999987654    2222101111111122356789999999997


Q ss_pred             ---CCEEEEEe-CCeEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCC----CEEEEEcCCCcE
Q 011368          325 ---GQHLLSRD-YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGSYSNLL  394 (487)
Q Consensus       325 ---~~~l~s~~-d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~----~~l~sg~~dg~i  394 (487)
                         +.++++++ ++.+.+|+... +..  +..+.+|...+               ++++|+|++    ++|++|+.||.|
T Consensus       179 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          179 RFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             SSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             CCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCCCCCcceEEEEEcCCCeE
Confidence               88999886 48887777664 443  56666776644               699999998    899999999999


Q ss_pred             EEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccc----ce-ecCCC--CCccccccccCCCeEEEEE
Q 011368          395 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR----QA-HENSS--SGHHELSYNLSSKLLHLAW  467 (487)
Q Consensus       395 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~----~~-~~w~~--~~~~~~~~~~~~~v~~~~~  467 (487)
                      ++||+.++.... ....+..........+  ....     +..+..+    .. .+|..  .+......+|...|++++|
T Consensus       243 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          243 RIFKITEKLSPL-ASEESLTNSNMFDNSA--DVDM-----DAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             EEEEEEECC-----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             EEEeCCCCcCcc-ccCCcccceeccCCCc--cccc-----ccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence            999999763322 2222222222222221  1111     2222222    22 33422  1234445678999999999


Q ss_pred             cCCCCEEEEecCCe-EEEEe
Q 011368          468 HPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       468 spd~~~la~~s~~~-~~i~~  486 (487)
                      +|++++||+++.|+ +++|+
T Consensus       315 s~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEe
Confidence            99999999999665 99996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-33  Score=266.34  Aligned_cols=283  Identities=12%  Similarity=0.184  Sum_probs=212.2

Q ss_pred             eEeee-cCCCcccccccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368           93 YKTEF-QSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        93 ~~~~~-~~h~~~~~~~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      .+..+ .+|.            +.|.+++|+  + ++.+|++|+.|++|++||+.+.......                 
T Consensus        54 ~~~~~~~~h~------------~~V~~~~~s--~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-----------------  102 (437)
T 3gre_A           54 LIATLMENEP------------NSITSSAVS--PGETPYLITGSDQGVIKIWNLKEIIVGEVY-----------------  102 (437)
T ss_dssp             EEEEECTTTT------------SCEEEEEEE--CSSSCEEEEEETTSEEEEEEHHHHHTTCCC-----------------
T ss_pred             EEeeeccCCC------------CceEEEEEC--CCCCCEEEEecCCceEEEeECcccccCccc-----------------
Confidence            45677 8898            899999995  6 8899999999999999999872210000                 


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEcc--CCCceeEEeecC--
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMK--  245 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~--~~~~~~~~~~~~--  245 (487)
                                             .+..  ...|...|.+++|+|++++|++| .|+.|++||++  ..+.........  
T Consensus       103 -----------------------~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i  157 (437)
T 3gre_A          103 -----------------------SSSL--TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI  157 (437)
T ss_dssp             -----------------------SCSE--EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             -----------------------ceee--eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee
Confidence                                   0011  13689999999999999999999 99999999995  122232221100  


Q ss_pred             -CCCCCC--CCCcEEEEE--EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEE
Q 011368          246 -PSNMDD--LTEVITSAE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  320 (487)
Q Consensus       246 -~~~~~~--~~~~v~~v~--~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~  320 (487)
                       ...+..  +...+.++.  ++|++ .+|++++.|+.|++||+++++..    ..+..           ..|...|.+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~-----------~~h~~~v~~~~  221 (437)
T 3gre_A          158 RKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIEN-----------SPRHGAVSSIC  221 (437)
T ss_dssp             EEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEEC-----------CGGGCCEEEEE
T ss_pred             EEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEcc-----------CCCCCceEEEE
Confidence             001122  566778887  55788 99999999999999999987654    55554           11468999999


Q ss_pred             EcCCCCEEEEEe-CCeEEEEeCCCCCceeeeee-cccccccccccccCCCCcceeeEEEEc----CCCCEEEEEcCCCcE
Q 011368          321 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS----GDGLHFATGSYSNLL  394 (487)
Q Consensus       321 ~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s----~d~~~l~sg~~dg~i  394 (487)
                      |+|++++|++|+ |+.|++||+++ +.++..+. .|...+               ++++|+    |++.+|++|+.||.|
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPI---------------THVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEE---------------EEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCce---------------EEEEeccccCCCccEEEEEcCCCcE
Confidence            999999999986 59999999997 78888775 454433               588555    578899999999999


Q ss_pred             EEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCcccccc--ccCCCeEEEEEcCCCC
Q 011368          395 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY--NLSSKLLHLAWHPTTN  472 (487)
Q Consensus       395 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~--~~~~~v~~~~~spd~~  472 (487)
                      ++||+.++ .....+.+|...+..+.++|.  ++.     +               ......  .|...|.+++|+ +++
T Consensus       286 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----l---------------~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          286 TIWNFVKG-HCQYAFINSDEQPSMEHFLPI--EKG-----L---------------EELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEEETTTT-EEEEEEESSSSCCCGGGGSCB--CSS-----G---------------GGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EEEEcCCC-cEEEEEEcCCCCCccceeccc--ccc-----c---------------ccceecccccCCceEEEEEC-Cce
Confidence            99999987 567889999999988888874  222     1               001122  377889999999 788


Q ss_pred             EEEEec-CCeEEEEeC
Q 011368          473 LIACAN-GNSLFFHYA  487 (487)
Q Consensus       473 ~la~~s-~~~~~i~~~  487 (487)
                      +|++|+ ++.+++|+.
T Consensus       342 ~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          342 ILLTDEATSSIVMFSL  357 (437)
T ss_dssp             EEEEEGGGTEEEEEET
T ss_pred             EEEecCCCCeEEEEEC
Confidence            999988 555999973

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-31  Score=253.31  Aligned_cols=216  Identities=16%  Similarity=0.122  Sum_probs=164.9

Q ss_pred             cceeEEEEEecCCCcEE-EEEeCCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      +.|.+++|  +|++++| ++++.|+.|++||+.  +++......                                    
T Consensus       103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------  144 (450)
T 2vdu_B          103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------  144 (450)
T ss_dssp             CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred             CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence            67999999  6789886 889999999999998  665443310                                    


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC---CC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~  266 (487)
                               ...|...|.+++|+|++++|++| .++.|++|++........    ....+.+|...|.+++|+|+   + 
T Consensus       145 ---------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~-  210 (450)
T 2vdu_B          145 ---------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF----TQEPILGHVSMLTDVHLIKDSDGH-  210 (450)
T ss_dssp             ---------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC----CCCCSEECSSCEEEEEEEECTTSC-
T ss_pred             ---------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc----cceeeecccCceEEEEEcCCCCCC-
Confidence                     02567889999999999999999 999999999985443110    01246789999999999999   8 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.|+.|++||+++++..    ..+.            .+|...|.+++|+ ++++|++++ |+.|++||+++ +
T Consensus       211 ~~l~s~~~d~~i~vwd~~~~~~~----~~~~------------~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~  272 (450)
T 2vdu_B          211 QFIITSDRDEHIKISHYPQCFIV----DKWL------------FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-G  272 (450)
T ss_dssp             EEEEEEETTSCEEEEEESCTTCE----EEEC------------CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-C
T ss_pred             cEEEEEcCCCcEEEEECCCCcee----eeee------------cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-C
Confidence            99999999999999999987643    3311            2357899999999 999999986 59999999997 7


Q ss_pred             ceeeeeecccccccccccc----------cCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEe
Q 011368          346 TPVATFKIHEHLRPKLCDL----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH  399 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~  399 (487)
                      +.+..+..+..........          ........+.+++|+|++++|++++ .|+.|+||++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            7777776543111000000          0001112346999999999999998 8999999999

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=251.37  Aligned_cols=255  Identities=17%  Similarity=0.204  Sum_probs=195.6

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      +..+.+|.            +.|.+++|  ++++.+|++++.|+.|++||+..+.....                     
T Consensus         4 ~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------------   48 (379)
T 3jrp_A            4 VVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLI---------------------   48 (379)
T ss_dssp             -CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEE---------------------
T ss_pred             cEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceee---------------------
Confidence            46688898            99999999  57899999999999999999984432211                     


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                             .. +.+|...|++++|+++  +++|+++ .|+.|++||+..+.. ..+     ..+.
T Consensus        49 -----------------------~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~-----~~~~   98 (379)
T 3jrp_A           49 -----------------------DT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQI-----AVHA   98 (379)
T ss_dssp             -----------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-EEE-----EEEC
T ss_pred             -----------------------eE-ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEe-----eeec
Confidence                                   11 3789999999999987  9999999 999999999995431 111     1346


Q ss_pred             CCCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-----
Q 011368          251 DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-----  323 (487)
Q Consensus       251 ~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-----  323 (487)
                      .|...|.+++|+|+  + .+|++++.|+.|++||++.+....  ...+.             +|...|.+++|+|     
T Consensus        99 ~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~-------------~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           99 VHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIIID-------------AHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEEEE-------------CCTTCEEEEEECCCC---
T ss_pred             CCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEEec-------------CCCCceEEEEEcCccccc
Confidence            78899999999999  8 999999999999999999864321  12222             3578999999999     


Q ss_pred             --------CCCEEEEEe-CCeEEEEeCCCCCc---eeeeeecccccccccccccCCCCcceeeEEEEcCC---CCEEEEE
Q 011368          324 --------DGQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATG  388 (487)
Q Consensus       324 --------~~~~l~s~~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~~l~sg  388 (487)
                              ++.+|++++ |+.|++||++....   ....+..|...+               ++++|+|+   +++|+++
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEE
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------eEEEECCCCCCCCeEEEE
Confidence                    689999986 59999999986332   345566676644               69999999   8999999


Q ss_pred             cCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEc
Q 011368          389 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH  468 (487)
Q Consensus       389 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~s  468 (487)
                      +.||.|++||+.++......                                          .......+...|.+++|+
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s  265 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKK------------------------------------------TLLKEEKFPDVLWRASWS  265 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEE------------------------------------------EESSSSCCSSCEEEEEEC
T ss_pred             eCCCEEEEEeCCCCCcccee------------------------------------------eeeccccCCCcEEEEEEc
Confidence            99999999999876321000                                          001112355578888888


Q ss_pred             CCCCEEEEecCCe-EEEEe
Q 011368          469 PTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       469 pd~~~la~~s~~~-~~i~~  486 (487)
                      |++++|++++.|+ +++|+
T Consensus       266 ~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          266 LSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             SSSCCEEEEESSSSEEEEE
T ss_pred             CCCCEEEEecCCCcEEEEe
Confidence            8888888877554 88875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-31  Score=248.19  Aligned_cols=254  Identities=12%  Similarity=0.187  Sum_probs=207.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+|++++|++++.||.|++||+.+++.                           ...+. |.       
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------~~~~~-~~-------  115 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC---------------------------VATWK-SP-------  115 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEE-CS-------
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEee-cC-------
Confidence            34889999999999999999999999999999987754                           34444 55       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCC-----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                           ..|.+++|  ++++.++++++.+     +.|++||+..+..........                          
T Consensus       116 -----~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--------------------------  162 (369)
T 3zwl_B          116 -----VPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS--------------------------  162 (369)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC--------------------------
T ss_pred             -----CCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc--------------------------
Confidence                 78999999  5789999999998     999999998765322111000                          


Q ss_pred             eeeeeeeeccceeeeecccCCC--ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                               ...... +..|..  .+.+++|+|++++|+++ .|+.|++||+++.......       +..|...|.+++
T Consensus       163 ---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~  225 (369)
T 3zwl_B          163 ---------EEPIHK-IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS-------IDLHEKSISDMQ  225 (369)
T ss_dssp             ---------SSCSEE-EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE-------EECCSSCEEEEE
T ss_pred             ---------cceeee-ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE-------EecCCCceeEEE
Confidence                     001111 144555  89999999999999999 9999999999964555443       457889999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC-----
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----  334 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~-----  334 (487)
                      |+|++ .+|++++.|+.|++||+++++..    ..+..              ...+..++|+|+++++++++ ++     
T Consensus       226 ~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (369)
T 3zwl_B          226 FSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYET--------------DCPLNTAVITPLKEFIILGGGQEAKDVT  286 (369)
T ss_dssp             ECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEECCC-----
T ss_pred             ECCCC-CEEEEecCCceEEEEECCCCcee----eeecC--------------CCCceeEEecCCCceEEEeecCCCceEE
Confidence            99999 99999999999999999987654    44443              57899999999999999875 35     


Q ss_pred             ---------eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          335 ---------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       335 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                               .+++||+.+ ++.+..+.+|...+               ++++|+|++++|++++.||.|++|+++++
T Consensus       287 ~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          287 TTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------NTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             --------CEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEecCCCcceeEEEecCC-CcchhheecccCcE---------------EEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence                     899999987 88888898888754               69999999999999999999999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-31  Score=253.12  Aligned_cols=253  Identities=13%  Similarity=0.095  Sum_probs=192.4

Q ss_pred             cccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .|...|.+++|+| ++++|++++.|+.|++||+.+...                         .......+|.       
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~-------  163 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD-------  163 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence            5899999999999 779999999999999999875321                         1222223344       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  ++++.+|++++.|+.|++||+.... ...                                    
T Consensus       164 -----~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~-~~~------------------------------------  199 (383)
T 3ei3_B          164 -----YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDGHE-IFK------------------------------------  199 (383)
T ss_dssp             -----CCEEEEEE--ETTTTEEEEEETTSEEEEEETTSCE-EEE------------------------------------
T ss_pred             -----CCeEEEEE--CCCCCEEEEECCCCCEEEEECCCCE-EEE------------------------------------
Confidence                 78999999  4789999999999999999995332 221                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCC---ceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                 +.+|...|.+++|+|+++ +|+++ .|+.|++||+++..   .....        .+|...|.+++|+|
T Consensus       200 -----------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~s~  260 (383)
T 3ei3_B          200 -----------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--------MPHEKPVNAAYFNP  260 (383)
T ss_dssp             -----------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------EECSSCEEEEEECT
T ss_pred             -----------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--------ecCCCceEEEEEcC
Confidence                       268999999999999999 89998 99999999999632   23322        25889999999999


Q ss_pred             -CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCc----cccccccccceeEEEEcCCCCEEEEE-eCCeEE
Q 011368          264 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS----KSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  337 (487)
Q Consensus       264 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~  337 (487)
                       ++ .+|++++.|+.|++||+++++..    ..+..|......    ..........+..++|+|++++  ++ .|+.|+
T Consensus       261 ~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~  333 (383)
T 3ei3_B          261 TDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID  333 (383)
T ss_dssp             TTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred             CCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE
Confidence             98 99999999999999999987654    444443211100    0000011234556777788777  44 469999


Q ss_pred             EEeCCCCCceeeeeeccc--ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          338 LWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       338 iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +||+.+ ++.+..+.++.  ..+               ..++|+|++++|++|+ ||.|+|||+++
T Consensus       334 iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          334 IYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999987 88888888743  222               3679999999999997 89999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-32  Score=260.04  Aligned_cols=248  Identities=11%  Similarity=0.082  Sum_probs=183.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ++|.+++|  +|++++|++++.|+.|++||+.++.....                                         
T Consensus        12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~-----------------------------------------   48 (377)
T 3dwl_C           12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA-----------------------------------------   48 (377)
T ss_dssp             SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred             CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence            78999999  57899999999999999999987732111                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                         .. +.+|...|.+++|+|++++|+++ .|+.|++||+.........     ..+.+|...|.+++|+|++ ++|+++
T Consensus        49 ---~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~  118 (377)
T 3dwl_C           49 ---RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----LVLLRLNRAATFVRWSPNE-DKFAVG  118 (377)
T ss_dssp             ---CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-----EECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred             ---EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-----eEecccCCceEEEEECCCC-CEEEEE
Confidence               11 37899999999999999999999 9999999999855411111     1356799999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC-------
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD-------  344 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~-------  344 (487)
                      +.|+.|++||+++++... ..+.+..            .|...|.+++|+|++++|++++ |+.|++||+...       
T Consensus       119 ~~d~~i~iwd~~~~~~~~-~~~~~~~------------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  185 (377)
T 3dwl_C          119 SGARVISVCYFEQENDWW-VSKHLKR------------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE  185 (377)
T ss_dssp             ESSSCEEECCC-----CC-CCEEECS------------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred             ecCCeEEEEEECCcccce-eeeEeec------------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence            999999999999875210 0133332            1578999999999999999986 599999998531       


Q ss_pred             ----------CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          345 ----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       345 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                                +.++..+ .|...               +++++|+|++++|++++.||.|++||+.+++....       
T Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~---------------v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-------  242 (377)
T 3dwl_C          186 ASVWGSRLPFNTVCAEY-PSGGW---------------VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR-------  242 (377)
T ss_dssp             SCSSCSCCCEEEEEECC-CCSSS---------------EEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE-------
T ss_pred             ccccccccchhhhhhcc-cCCce---------------EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce-------
Confidence                      2233333 44433               26999999999999999999999999998743100       


Q ss_pred             ccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          415 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                                                          .......|...|.+++|+|++++|++++++++++|.
T Consensus       243 ------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          243 ------------------------------------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             ------------------------------------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             ------------------------------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence                                                011223455678889999999999999888888875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-32  Score=264.44  Aligned_cols=263  Identities=11%  Similarity=0.057  Sum_probs=184.5

Q ss_pred             cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..+|.+.|++|+|+| ++++|++|+.||+|+|||++++..                         +.......+.     
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-------------------------~~~~~~~~~~-----  209 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-------------------------RVFASSDTIN-----  209 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-------------------------EEEECCSSCS-----
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-------------------------eEEeccCCCC-----
Confidence            346999999999998 689999999999999999876532                         1111122222     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..+.+++|  ++++.+|++|+.||.|++||+.+.....                                   
T Consensus       210 -------~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~-----------------------------------  245 (435)
T 4e54_B          210 -------IWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN-----------------------------------  245 (435)
T ss_dssp             -------CCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC-----------------------------------
T ss_pred             -------ccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE-----------------------------------
Confidence                   56788999  5789999999999999999987543221                                   


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                   +.+|...|++++|+|++. +|++| .|+.|++||++........     ....+|...|++++|+|+
T Consensus       246 -------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~spd  307 (435)
T 4e54_B          246 -------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLPHRHPVNAACFSPD  307 (435)
T ss_dssp             -------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCBCSSCEEECCBCTT
T ss_pred             -------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeeeccccccceeECCC
Confidence                         378999999999999876 67778 9999999999854432211     234679999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccc----cccccccceeEEEEcCCCCEEEEE-eC-CeEEE
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS----FFTEIIASISDIKFANDGQHLLSR-DY-MNLKL  338 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~----~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~i  338 (487)
                      | .+|++++.||.|++||++++...    ..+..|........    ........+..+.+++++..++++ .+ +.|++
T Consensus       308 g-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i  382 (435)
T 4e54_B          308 G-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV  382 (435)
T ss_dssp             S-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred             C-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE
Confidence            9 99999999999999999987654    33333221110000    000011223333344444433332 22 67999


Q ss_pred             EeCCCCCceeeeee-cccccccccccccCCCCcceeeEE-EEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          339 WDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       339 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ||..+ ++.+..+. .|...+               .++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus       383 wd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          383 FDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             ECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            99987 77776664 444432               355 7999999999876 77999999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-30  Score=243.53  Aligned_cols=249  Identities=11%  Similarity=0.109  Sum_probs=174.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+|||++||+|+.++ ++||++++.+.                           ..  ..+.       
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~---------------------------~~--~~~~-------   58 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH---------------------------IM--SQEM-------   58 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------EE--EEEC-------
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------ee--eeec-------
Confidence            34889999999999999999998775 78999875542                           11  1111       


Q ss_pred             ccccccceeEEEEEecCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                           ..+..+++.  ++++.+ ++++.|++|++||+.+++....                                   
T Consensus        59 -----~~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~~-----------------------------------   96 (355)
T 3vu4_A           59 -----RHLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVSR-----------------------------------   96 (355)
T ss_dssp             -----SCCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEEE-----------------------------------
T ss_pred             -----CCeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEEE-----------------------------------
Confidence                 336778884  455565 5677889999999998876543                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                   ..+...|.+++++++  .++++.|+.|++||+.+..+.+.       .+..   ....+++++ .  
T Consensus        97 -------------~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~-------~~~~---~~~~~~~s~-~--  148 (355)
T 3vu4_A           97 -------------IKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT-------DDIR---FGGVCEFSN-G--  148 (355)
T ss_dssp             -------------EECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS-------CCEE---EEEEEEEET-T--
T ss_pred             -------------EECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE-------Eecc---CCceEEEEc-c--
Confidence                         235668999999875  45556788999999995523321       2222   344556777 3  


Q ss_pred             EEEE--EeCCCeEEEEEccCCccccccceeecccccccCc-cccccccccceeEEEEcCCCCEEEEEe-CCe-EEEEeCC
Q 011368          268 LLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRD-YMN-LKLWDIR  342 (487)
Q Consensus       268 ~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~-i~iwd~~  342 (487)
                      ++++  |+.||.|++||++++............  ....+ ...+.+|...|.+++|+|+|++|++|+ |++ |++||++
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~--~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ--KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccccccccccc--cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            4555  578999999999976421000000000  00001 223456789999999999999999986 598 9999999


Q ss_pred             CCCceeeeee-c-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          343 MDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       343 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      + ++.+..+. + |...+               ++++|+|+|++|++++.|++|+|||+..+
T Consensus       227 ~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          227 D-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             T-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             C-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            7 88888887 4 66544               69999999999999999999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.4e-31  Score=253.61  Aligned_cols=267  Identities=16%  Similarity=0.229  Sum_probs=204.4

Q ss_pred             ccccccCcEEEEEEcCC-CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..+.|.+.|++++|+|+ +.+||+|+.||.|+||++.+....                 .......+....+.+|.    
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-----------------~~~~~~~~~~~~~~~h~----  181 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-----------------PEPSGECQPDLRLRGHQ----  181 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-----------------CCTTCCCCCSEEEECCS----
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-----------------cCccccCCCcEEecCCC----
Confidence            35679999999999997 689999999999999998763221                 00011234467788898    


Q ss_pred             cccccccccceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                              ..|.+++|  ++++. +|++++.||.|++|++..+......                               
T Consensus       182 --------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------  220 (430)
T 2xyi_A          182 --------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHRV-------------------------------  220 (430)
T ss_dssp             --------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGGE-------------------------------
T ss_pred             --------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCce-------------------------------
Confidence                    88999999  46666 9999999999999999874321000                               


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCC--ceeEEeecCCCCCCCCCCcEEEEE
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                              ...... +.+|...|.+++|+| ++.+|+++ .|+.|++||++...  ....       .+..|...|++++
T Consensus       221 --------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~i~  284 (430)
T 2xyi_A          221 --------IDAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH-------TVDAHTAEVNCLS  284 (430)
T ss_dssp             --------EECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE-------EEECCSSCEEEEE
T ss_pred             --------ecccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee-------EeecCCCCeEEEE
Confidence                    001111 368999999999999 67888898 99999999999653  2222       2357889999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKL  338 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~i  338 (487)
                      |+|++..+|++++.||.|++||+++....   +..+..             |...|.+++|+|+++ +|++++ |+.|++
T Consensus       285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~-------------h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          285 FNPYSEFILATGSADKTVALWDLRNLKLK---LHSFES-------------HKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEC-------------CSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             eCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeec-------------CCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            99998458999999999999999974321   245554             478999999999996 567765 699999


Q ss_pred             EeCCCCC-------------ceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCC
Q 011368          339 WDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       339 wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~  402 (487)
                      ||+...+             ..+..+.+|...+               ++++|+|+++ +|++++.||.|+||++...
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9997522             3455555665533               6999999999 8999999999999999754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-30  Score=249.63  Aligned_cols=274  Identities=16%  Similarity=0.235  Sum_probs=196.1

Q ss_pred             ccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      .+.+.|++++|+  |+ +.+|++++.||.|++|++...........                                  
T Consensus       126 ~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~----------------------------------  169 (430)
T 2xyi_A          126 NHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG----------------------------------  169 (430)
T ss_dssp             EESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC----------------------------------
T ss_pred             cCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCccc----------------------------------
Confidence            334899999996  44 67899999999999999986311100000                                  


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                        ....... +.+|...|++++|+|++. +|++| .||.|++|++.........+. ....+.+|...|.+++|+|++..
T Consensus       170 --~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~  245 (430)
T 2xyi_A          170 --ECQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHTAVVEDVAWHLLHES  245 (430)
T ss_dssp             --CCCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEECCCSSCEEEEEECSSCTT
T ss_pred             --cCCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeecCCCCCEeeeEEeCCCCC
Confidence              0011111 368999999999999988 99999 999999999986332111100 01235689999999999995448


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC-EEEEEe-CCeEEEEeCCCCC
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~-d~~i~iwd~~~~~  345 (487)
                      +|++++.||.|++||++++... .....+..             |...|++++|+|++. +|++|+ ||.|++||++...
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~-------------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~  311 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTS-KPSHTVDA-------------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK  311 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSS-SCSEEEEC-------------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             EEEEEeCCCeEEEEECCCCCCC-cceeEeec-------------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC
Confidence            9999999999999999986311 11133333             478999999999998 577776 5999999999756


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      .++..+..|...+               ++++|+|+++ +|++++.||.|+|||+..........        ..   . 
T Consensus       312 ~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~---~-  364 (430)
T 2xyi_A          312 LKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE--------DA---E-  364 (430)
T ss_dssp             SCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH--------HH---H-
T ss_pred             CCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc--------cc---c-
Confidence            7788888887654               6999999985 69999999999999998743211000        00   0 


Q ss_pred             CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCC-EEEEecCCe-EEEEe
Q 011368          425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN-LIACANGNS-LFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~s~~~-~~i~~  486 (487)
                       ++.                    .+......+|...|.+++|+|+++ +|++++.|+ +.||.
T Consensus       365 -~~~--------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          365 -DGP--------------------PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             -HCC--------------------TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             -cCC--------------------cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence             000                    012223446777899999999999 788888655 88886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-30  Score=239.49  Aligned_cols=247  Identities=19%  Similarity=0.282  Sum_probs=200.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+|++++||+|+.||+|+||++.+++.                           +..+.+|.       
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~---------------------------~~~~~~h~-------  109 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---------------------------LRNMTSHS-------  109 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---------------------------EEEecCcc-------
Confidence            35788999999999999999999999999999887754                           57788998       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..+.++.+    ++..+++++.++.+++|+.........                                    
T Consensus       110 -----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~------------------------------------  144 (318)
T 4ggc_A          110 -----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA------------------------------------  144 (318)
T ss_dssp             -----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE------------------------------------
T ss_pred             -----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEE------------------------------------
Confidence                 77777665    357899999999999999876643221                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                .+.+|...+..+.+++++++++++ .|+.|++||++++......    ......+...|.++.++|.+..
T Consensus       145 ----------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~  210 (318)
T 4ggc_A          145 ----------TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKAVAWCPWQSN  210 (318)
T ss_dssp             ----------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCSCEEEEEECTTSTT
T ss_pred             ----------EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCCceEEEEecCCCCc
Confidence                      136899999999999999999999 9999999999854432111    1123567788999999998755


Q ss_pred             EEE--EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---CCeEEEEeCC
Q 011368          268 LLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIR  342 (487)
Q Consensus       268 ~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---d~~i~iwd~~  342 (487)
                      .+.  +++.++.|++||.+.....    ....              +...+..+.|+|++..+++++   |+.|++||++
T Consensus       211 ~~~~~~~~~~~~i~lwd~~~~~~~----~~~~--------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~  272 (318)
T 4ggc_A          211 VLATGGGTSDRHIRIWNVCSGACL----SAVD--------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  272 (318)
T ss_dssp             EEEEEECTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             EEEEEecCCCCEEEEEeccccccc----cccc--------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence            553  4557899999999886533    2222              256799999999999888653   5999999999


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      + ++++..+.+|...+               ++++|+|||++|++|+.||+|+|||+.+.
T Consensus       273 ~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          273 T-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             T-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             C-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            7 89999999998765               69999999999999999999999999754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-30  Score=236.20  Aligned_cols=241  Identities=17%  Similarity=0.275  Sum_probs=196.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|.+++|+|++++|++|+.||.|++|++.....                        .+....+.+|.      
T Consensus        55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~------  104 (313)
T 3odt_A           55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ------  104 (313)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS------
T ss_pred             eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc------
Confidence            345788999999999999999999999999999876532                        23356678888      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|    ++.++++++.|+.|++||  .++....                                   
T Consensus       105 ------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~-----------------------------------  137 (313)
T 3odt_A          105 ------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYN-----------------------------------  137 (313)
T ss_dssp             ------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEE-----------------------------------
T ss_pred             ------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEe-----------------------------------
Confidence                  88999999    356999999999999999  3322221                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~  264 (487)
                                  +..|...+.+++|.| +++.++++ .|+.|++||..   .....       +.. |...+.+++|+|+
T Consensus       138 ------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~-------~~~~~~~~i~~~~~~~~  195 (313)
T 3odt_A          138 ------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKT-------FSGIHNDVVRHLAVVDD  195 (313)
T ss_dssp             ------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEE-------ECSSCSSCEEEEEEEET
T ss_pred             ------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEE-------EeccCcccEEEEEEcCC
Confidence                        267899999999988 89999999 99999999944   22222       233 8889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~  343 (487)
                      + . +++++.||.|++||+++++..    ..+..             |...|.+++|+|++. |+++ .|+.|++||+++
T Consensus       196 ~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          196 G-H-FISCSNDGLIKLVDMHTGDVL----RTYEG-------------HESFVYCIKLLPNGD-IVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             T-E-EEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEECTTSC-EEEEETTSEEEEECTTT
T ss_pred             C-e-EEEccCCCeEEEEECCchhhh----hhhhc-------------CCceEEEEEEecCCC-EEEEecCCEEEEEECCC
Confidence            8 6 999999999999999987654    55555             478999999999995 5555 579999999987


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                       ++.+..+..|...+               ++++|+|+++ +++++.||.|++|++.+++.
T Consensus       256 -~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          256 -GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             -CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             -CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence             88888888887644               6999999998 66799999999999987643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9e-30  Score=245.89  Aligned_cols=265  Identities=13%  Similarity=0.193  Sum_probs=217.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++++|+  +++|++|+.||+|++||+.+++.                           ...+.+|.       
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~---------------------------~~~~~~h~-------  199 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC---------------------------IHTLYGHT-------  199 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-------
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE---------------------------EEEECCCC-------
Confidence            3588999999998  56999999999999999887653                           57788998       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|.    +..+++++.|+.|++||+.+++....                                    
T Consensus       200 -----~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~------------------------------------  234 (445)
T 2ovr_B          200 -----STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV------------------------------------  234 (445)
T ss_dssp             -----SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE------------------------------------
T ss_pred             -----CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE------------------------------------
Confidence                 889999993    46899999999999999998765543                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 +.+|...|.++++  +++.+++| .|+.|++||+++. ....       .+.+|...|.++.|  ++ .
T Consensus       235 -----------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~-------~~~~~~~~v~~~~~--~~-~  290 (445)
T 2ovr_B          235 -----------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLH-------TLQGHTNRVYSLQF--DG-I  290 (445)
T ss_dssp             -----------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEE-------EECCCSSCEEEEEE--CS-S
T ss_pred             -----------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeE-------EecCCCCceEEEEE--CC-C
Confidence                       3688999999999  68899999 9999999999854 3433       24678899999999  66 8


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      ++++++.||.|++||+++++..    ..+..             |...+.++.++  ++++++++ ||.|++||+++ ++
T Consensus       291 ~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~-~~  350 (445)
T 2ovr_B          291 HVVSGSLDTSIRVWDVETGNCI----HTLTG-------------HQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQ  350 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE----EEECC-------------CCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CC
T ss_pred             EEEEEeCCCeEEEEECCCCCEE----EEEcC-------------CcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-Cc
Confidence            9999999999999999987654    45555             36678887774  66888886 69999999987 78


Q ss_pred             eeeeeec---ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEE-----eccCCcccc
Q 011368          347 PVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV-----EAGKNENRK  418 (487)
Q Consensus       347 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~  418 (487)
                      .+..+..   |...+               ++++|+  +++|++|+.||.|++||+.+++. ...+     ..|...+.+
T Consensus       351 ~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          351 CLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             EEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEE
T ss_pred             EEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCce-eeeeeccccCCCCceEEE
Confidence            8888876   33322               578885  68999999999999999998854 4455     478889999


Q ss_pred             ceEeeCCccccccccceeeecccce
Q 011368          419 PILQAAPRARRSSLSNLTRGLYRQA  443 (487)
Q Consensus       419 ~~~~~~~~~~~~~~~~l~~g~~~~~  443 (487)
                      ++++|  ++.+     +++|+.|+.
T Consensus       413 ~~~s~--~~~~-----la~~~~dg~  430 (445)
T 2ovr_B          413 IRASN--TKLV-----CAVGSRNGT  430 (445)
T ss_dssp             EEECS--SEEE-----EEEECSSSS
T ss_pred             EEecC--CEEE-----EEEcccCCC
Confidence            99998  6676     899998873

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-31  Score=244.33  Aligned_cols=246  Identities=15%  Similarity=0.105  Sum_probs=181.9

Q ss_pred             EEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeE
Q 011368           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (487)
Q Consensus        39 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~  118 (487)
                      .+.+++++|++|+.||.|++||+.+++..                           ..+.  .            ..|.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~~   81 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPRT   81 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCCT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCcee
Confidence            44568899999999999999999887642                           2232  2            56778


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeee
Q 011368          119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKV  198 (487)
Q Consensus       119 v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (487)
                      +.|+  |+   +++++.|++|++|+..........                                     ......+.
T Consensus        82 ~~~~--~~---~~s~s~D~~i~~w~~~~~~~~~~~-------------------------------------~~~~~~~~  119 (343)
T 3lrv_A           82 GGEH--PA---IISRGPCNRLLLLYPGNQITILDS-------------------------------------KTNKVLRE  119 (343)
T ss_dssp             TCCC--CS---EEEECSTTEEEEEETTTEEEEEET-------------------------------------TTCCEEEE
T ss_pred             eeeC--Cc---eEEecCCCeEEEEEccCceEEeec-------------------------------------CCcceeEE
Confidence            8885  33   999999999999998753211110                                     00111222


Q ss_pred             ecccCCCceeEEEeCC--CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368          199 YPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       199 ~~~~~~~~v~~i~~s~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                      +..+|...|.+++|+|  ++++++++ .|++|++||++++. .....      ...+...+.+++|+|++ .+|++|+.|
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~------~~~~~~~i~~~~~~pdg-~~lasg~~d  191 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVH------SAKSDVEYSSGVLHKDS-LLLALYSPD  191 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEE------CCCSSCCCCEEEECTTS-CEEEEECTT
T ss_pred             eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEE------ecCCCCceEEEEECCCC-CEEEEEcCC
Confidence            2357778999999999  99999999 99999999999544 44332      13455679999999999 999999999


Q ss_pred             CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeec--
Q 011368          276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI--  353 (487)
Q Consensus       276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~--  353 (487)
                      |.|++||+++++...   ..+..            +|...|.+++|+|+|.+|++++++.|++||+++ ...+..+..  
T Consensus       192 g~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~-~~~~~~~~~~~  255 (343)
T 3lrv_A          192 GILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK-DVGTLAYPTYT  255 (343)
T ss_dssp             SCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTS-STTCBSSCCCB
T ss_pred             CEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC-CCcceeecccc
Confidence            999999999876321   22332            257899999999999999999888999999987 555444443  


Q ss_pred             -ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCc
Q 011368          354 -HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA  404 (487)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~  404 (487)
                       +...+.            . .+++|+|+|++|++++. |+.|+||++.+...
T Consensus       256 ~~~~~~~------------~-~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          256 IPEFKTG------------T-VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             C-----C------------C-EEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ccccccc------------c-eEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence             222110            0 26999999999999988 99999999976643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-30  Score=247.72  Aligned_cols=263  Identities=14%  Similarity=0.130  Sum_probs=201.4

Q ss_pred             cccccCcEEEEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|.+.|++++|+| ++++|++|+.||.|+||++.++...                    ....+....+.+|.     
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~-----  131 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT-----  131 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS-----
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC-----
Confidence            446999999999999 9999999999999999999877431                    00112356788898     


Q ss_pred             ccccccccceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                             ..|.+++|+  |++ .+|++++.|+.|++||+.+++......                               
T Consensus       132 -------~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------  171 (402)
T 2aq5_A          132 -------KRVGIVAWH--PTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------------------------  171 (402)
T ss_dssp             -------SCEEEEEEC--SSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred             -------CeEEEEEEC--cCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------------------------
Confidence                   899999994  666 699999999999999999886544310                               


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc-EEEEEEec
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHP  263 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p  263 (487)
                                    ..+|...|.+++|+|++++|+++ .|+.|++||++++ .....+      ...|... +.++.|+|
T Consensus       172 --------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~------~~~~~~~~~~~~~~~~  230 (402)
T 2aq5_A          172 --------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-TVVAEK------DRPHEGTRPVHAVFVS  230 (402)
T ss_dssp             --------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEE------ECSSCSSSCCEEEECS
T ss_pred             --------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-ceeeee------ccCCCCCcceEEEEcC
Confidence                          15789999999999999999999 9999999999954 333321      1456554 89999999


Q ss_pred             CCCCEEEEE---eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEE
Q 011368          264 IYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKL  338 (487)
Q Consensus       264 ~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~i  338 (487)
                      ++ .+|+++   +.|+.|++||+++++...   .....            .|...+.+++|+|++++|++ |+ |+.|++
T Consensus       231 ~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~~------------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          231 EG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQEL------------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             TT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEEC------------CCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred             CC-cEEEEeccCCCCceEEEEcCccccCCc---eEEec------------cCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence            99 899998   789999999999865321   22221            13567999999999999974 54 699999


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      ||+......+..+..+....          .   +.+++|+|++.++++  .++.+++|++.++.....
T Consensus       295 ~d~~~~~~~~~~l~~~~~~~----------~---v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~i  348 (402)
T 2aq5_A          295 FEITSEAPFLHYLSMFSSKE----------S---QRGMGYMPKRGLEVN--KCEIARFYKLHERKCEPI  348 (402)
T ss_dssp             EEECSSTTCEEEEEEECCSS----------C---CSEEEECCGGGSCGG--GTEEEEEEEEETTEEEEE
T ss_pred             EEecCCCcceEeecccccCC----------c---ccceEEeccccccee--cceeEEEEEcCCCcEEEE
Confidence            99987333355555543111          1   259999999998764  566999999998754433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=8.5e-31  Score=253.30  Aligned_cols=248  Identities=14%  Similarity=0.164  Sum_probs=169.5

Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      .+.|.+++|  +|++.+|++|+.||.|++||+.+++.........                                   
T Consensus        28 ~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~-----------------------------------   70 (447)
T 3dw8_B           28 ADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE-----------------------------------   70 (447)
T ss_dssp             GGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCC-----------------------------------
T ss_pred             cCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-----------------------------------
Confidence            489999999  5789999999999999999998765211000000                                   


Q ss_pred             cceeeeecccCC------------CceeEEEeCCCC--CEEEEe-cCCeEEEEEccCCCceeEEeecC------------
Q 011368          193 NMATKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMK------------  245 (487)
Q Consensus       193 ~~~~~~~~~~~~------------~~v~~i~~s~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------------  245 (487)
                      ...... +.+|.            ..|++++|+|++  ..|+++ .|+.|++||+.........+...            
T Consensus        71 ~~~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~  149 (447)
T 3dw8_B           71 YNVYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV  149 (447)
T ss_dssp             EEEEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred             eeEecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence            001111 25676            889999999998  789998 99999999998432210000000            


Q ss_pred             --------------------CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCc
Q 011368          246 --------------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  305 (487)
Q Consensus       246 --------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  305 (487)
                                          .....+|...|.+++|+|++ ++|+++ .|+.|++||+++.....   ..+..      .
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~---~~~~~------~  218 (447)
T 3dw8_B          150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF---NIVDI------K  218 (447)
T ss_dssp             CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE---EEEEC------C
T ss_pred             cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee---eeeec------c
Confidence                                00135799999999999999 999998 89999999998533211   22111      0


Q ss_pred             cccccccccceeEEEEcCCC-CEEEEEe-CCeEEEEeCCCCCce----eeeeecccccccccccccCCCCcceeeEEEEc
Q 011368          306 KSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  379 (487)
Q Consensus       306 ~~~~~~~~~~v~~v~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  379 (487)
                      ...+.+|...|.+++|+|++ ++|++|+ |+.|++||+++ +..    +..+..|........ +.  .....+.+++|+
T Consensus       219 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~v~~~~~s  294 (447)
T 3dw8_B          219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSF-FS--EIISSISDVKFS  294 (447)
T ss_dssp             CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCH-HH--HHTTCEEEEEEC
T ss_pred             cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCcccccc-cc--ccCceEEEEEEC
Confidence            11245678899999999998 8999886 59999999987 554    667777654100000 00  000023699999


Q ss_pred             CCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          380 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       380 ~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                      |+|++|++++. +.|++||+.+.......+.+|..
T Consensus       295 ~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  328 (447)
T 3dw8_B          295 HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY  328 (447)
T ss_dssp             TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred             CCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence            99999999999 99999999874455666766654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.7e-31  Score=249.32  Aligned_cols=262  Identities=11%  Similarity=0.076  Sum_probs=198.3

Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ++...|.+|+|  +|||+++|+++.|++|+  |...++.                                         
T Consensus        13 ~~~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~-----------------------------------------   47 (588)
T 2j04_A           13 EFEDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKD-----------------------------------------   47 (588)
T ss_dssp             CCSSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSC-----------------------------------------
T ss_pred             HhhccEEEEEE--CCCCCEEEEEcCCceee--cccccce-----------------------------------------
Confidence            34488999999  68999999999999999  5333221                                         


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                               +.+|...|.+++|+|+|      .++.+.+|+.+ +....        ++ .|...|.+++|+|+| ..||
T Consensus        48 ---------l~gh~~~v~~V~FsPdg------~~~~~~~~~~~-~~~~~--------~~-~~~~~V~~vawSPdG-~~LA  101 (588)
T 2j04_A           48 ---------INCNSKNLFHVKEFPLE------FENKLDFELAQ-QNGLL--------NS-QPVCYPRVCKPSPID-DWMA  101 (588)
T ss_dssp             ---------CSSBGGGTEEEEEECCC------CCCTTTTSCCC-SSCSS--------TT-SCSCCEEEEEECSSS-SCEE
T ss_pred             ---------ecCCCccEEEEEECCCC------CcceEEEEeCC-CceEe--------ec-CCCCcEEEEEECCCC-CEEE
Confidence                     26899999999999999      45555555544 22211        22 457889999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc---
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST---  346 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~---  346 (487)
                      +++.||.|++||..+  ..    ..+. |....        -...+.+++|||||++|++|+ ||+|++||+.. +.   
T Consensus       102 s~s~dg~V~iwd~~~--~l----~~l~-~~~~~--------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~  165 (588)
T 2j04_A          102 VLSNNGNVSVFKDNK--ML----TNLD-SKGNL--------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENT  165 (588)
T ss_dssp             EEETTSCEEEEETTE--EE----EECC-CSSCS--------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTC
T ss_pred             EEeCCCcEEEEeCCc--ee----eecc-CCCcc--------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Ccccc
Confidence            999999999999544  11    3333 31100        013599999999999999987 59999999986 43   


Q ss_pred             ----eeeee----ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc--eeEEE-eccCCc
Q 011368          347 ----PVATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--GGITV-EAGKNE  415 (487)
Q Consensus       347 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~--~~~~~-~~~~~~  415 (487)
                          .+..+    .+|...               |.+++|+|||  +++++.|++|++|++.+++.  ...++ .+|...
T Consensus       166 ~~~i~l~ti~~~~~gh~~~---------------V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~  228 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDW---------------VTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK  228 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCC---------------EEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred             ccceeeeeeeccccccccc---------------EEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence                25565    344443               3699999999  88899999999999988753  23567 488999


Q ss_pred             cccceEeeCCccccccccceeeecccce-ecCCCC-Ccc-ccccccCCCeEEEEE--cCCCCEEEEecCCeEEEEe
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH-ELSYNLSSKLLHLAW--HPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~-~~~-~~~~~~~~~v~~~~~--spd~~~la~~s~~~~~i~~  486 (487)
                      |.+++|+    +..     +++++ ++. ++|+.. ... ....+|...|.+++|  +||+..|++++.++..+|.
T Consensus       229 V~svaFs----g~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~  294 (588)
T 2j04_A          229 ITDLKIV----DYK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLL  294 (588)
T ss_dssp             CCCEEEE----TTE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred             EEEEEEE----CCE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence            9999998    244     78877 466 999543 333 333489999999999  9999999999977767775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=1.2e-29  Score=244.08  Aligned_cols=264  Identities=16%  Similarity=0.248  Sum_probs=215.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.+++|    +++++++|+.|+.|++||+.+++....                                         
T Consensus       134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~-----------------------------------------  168 (435)
T 1p22_A          134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI-----------------------------------------  168 (435)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred             CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence            67888876    688999999999999999988775543                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|...|.+++|  ++++|++| .||.|++||+.++. ...       .+.+|...|.+++|++   ..++++
T Consensus       169 ------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-~~~-------~~~~h~~~v~~l~~~~---~~l~s~  229 (435)
T 1p22_A          169 ------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-MLN-------TLIHHCEAVLHLRFNN---GMMVTC  229 (435)
T ss_dssp             ------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-EEE-------EECCCCSCEEEEECCT---TEEEEE
T ss_pred             ------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-EEE-------EEcCCCCcEEEEEEcC---CEEEEe
Confidence                  3789999999999  68899999 99999999999554 443       2467899999999973   689999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~  351 (487)
                      +.||.|++||++++.... ....+             .+|...|.+++|  +++++++|+ |+.|++||+++ +..+..+
T Consensus       230 s~dg~i~vwd~~~~~~~~-~~~~~-------------~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-~~~~~~~  292 (435)
T 1p22_A          230 SKDRSIAVWDMASPTDIT-LRRVL-------------VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-CEFVRTL  292 (435)
T ss_dssp             ETTSCEEEEECSSSSCCE-EEEEE-------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred             eCCCcEEEEeCCCCCCce-eeeEe-------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-CcEEEEE
Confidence            999999999998865321 01222             346789999999  678999886 59999999997 8888889


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  431 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  431 (487)
                      ..|...+               .++++  ++++|++|+.||.|++||+.++ .....+.+|...+.++.+    ++..  
T Consensus       293 ~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~----~~~~--  348 (435)
T 1p22_A          293 NGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF----DNKR--  348 (435)
T ss_dssp             ECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC----CSSE--
T ss_pred             cCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe----cCCE--
Confidence            8887654               47777  5789999999999999999987 557889999999999888    3455  


Q ss_pred             ccceeeecccce-ecCCCC--C---------ccccccccCCCeEEEEEcCCCCEEEEecCC-eEEEEeC
Q 011368          432 LSNLTRGLYRQA-HENSSS--G---------HHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA  487 (487)
Q Consensus       432 ~~~l~~g~~~~~-~~w~~~--~---------~~~~~~~~~~~v~~~~~spd~~~la~~s~~-~~~i~~~  487 (487)
                         +++|+.|+. ++|+..  .         ......+|...|.+++|  +++.|++++.| .+++|+.
T Consensus       349 ---l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          349 ---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             ---EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred             ---EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence               899999999 999331  1         34455689999999999  78899999955 5899963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.5e-30  Score=246.60  Aligned_cols=266  Identities=9%  Similarity=-0.013  Sum_probs=174.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      |...+....+++++.+||+|+.|++|+|||.++++..                      ....+..+.+|.         
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~---------  136 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH---------  136 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS---------
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC---------
Confidence            3334444555567788999999999999999887542                      233456788999         


Q ss_pred             ccccceeEEEEEec------CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          111 EIEEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       111 ~~~~~I~~v~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                         +.|++|+|+|.      .++++|++++.|++|+|||+.++.....                                
T Consensus       137 ---~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------------------------------  181 (393)
T 4gq1_A          137 ---NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------------------------------  181 (393)
T ss_dssp             ---SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------------------------------
T ss_pred             ---CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------------------------------
Confidence               99999999762      2688999999999999999987654332                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecC-----------------
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK-----------------  245 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----------------  245 (487)
                                     +.+|...|.+++|+|++. +|+++ .|++|++||++++..........                 
T Consensus       182 ---------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          182 ---------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             ---------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             ---------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence                           257888999999999874 78888 99999999998654332211000                 


Q ss_pred             CCCCCCCCCcEEEEEEe-cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCcccc------ccccccceeE
Q 011368          246 PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF------FTEIIASISD  318 (487)
Q Consensus       246 ~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~~~~v~~  318 (487)
                      .....+|...+.++.|. |++ ..|++++.|+.+++||+..+...    ..+..|.........      ...+. ....
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~  320 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPNVQGISLFP-SLLG  320 (393)
T ss_dssp             -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSC-CSSC
T ss_pred             eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccccccccccC-ccee
Confidence            01234677889999998 788 99999999999999999886543    233332111111000      01112 2223


Q ss_pred             EEEcC-C-CCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368          319 IKFAN-D-GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  395 (487)
Q Consensus       319 v~~s~-~-~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~  395 (487)
                      ..++| . +.++++|+ |+.|++||+.+ +..+..+..|...+               ++++|||||++||+++.+| +.
T Consensus       321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG~~LA~as~~G-v~  383 (393)
T 4gq1_A          321 ACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDGSHLAIATEGS-VL  383 (393)
T ss_dssp             CEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTSSEEEEEESSE-EE
T ss_pred             EEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCCCEEEEEeCCC-eE
Confidence            34443 3 34556665 59999999987 66676666676644               6999999999999998775 66


Q ss_pred             EEEeC
Q 011368          396 IFSHG  400 (487)
Q Consensus       396 iwd~~  400 (487)
                      +|.+.
T Consensus       384 lvrL~  388 (393)
T 4gq1_A          384 LTRLM  388 (393)
T ss_dssp             EEEEG
T ss_pred             EEEEe
Confidence            77664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.6e-30  Score=261.59  Aligned_cols=251  Identities=16%  Similarity=0.152  Sum_probs=186.3

Q ss_pred             eeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ..+.+|.            +.|++++|  ++++++|++|+.||.|++||+.++.....                      
T Consensus         3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~----------------------   46 (753)
T 3jro_A            3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLI----------------------   46 (753)
T ss_dssp             -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEE----------------------
T ss_pred             eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccc----------------------
Confidence            4578898            99999999  57899999999999999999985432211                      


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC--CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                                            .. +.+|...|++++|+|+  +++|++| .||.|++||+.++. ....     ..+.+
T Consensus        47 ----------------------~~-l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-~~~~-----~~~~~   97 (753)
T 3jro_A           47 ----------------------DT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-WSQI-----AVHAV   97 (753)
T ss_dssp             ----------------------EE-ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-EEEE-----EEECC
T ss_pred             ----------------------ee-ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-cccc-----ccccC
Confidence                                  11 3789999999999988  9999999 99999999999543 1111     13567


Q ss_pred             CCCcEEEEEEecC--CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC------
Q 011368          252 LTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN------  323 (487)
Q Consensus       252 ~~~~v~~v~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~------  323 (487)
                      |...|.+++|+|+  + .++++++.||.|++||++++....  ...+             .+|...|.+++|+|      
T Consensus        98 h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~~-------------~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           98 HSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIII-------------DAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             CSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEEE-------------ECCSSCEEEEEECCCC----
T ss_pred             CCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeEe-------------ecCCCceEEEEecCcccccc
Confidence            9999999999999  8 999999999999999999874221  1222             33578999999999      


Q ss_pred             -------CCCEEEEEe-CCeEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCC---CCEEEEEc
Q 011368          324 -------DGQHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGS  389 (487)
Q Consensus       324 -------~~~~l~s~~-d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~~l~sg~  389 (487)
                             ++.++++|+ ||.|++||++...   .....+.+|...+               ++++|+|+   +++|++|+
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEEE
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEEeccCCCCCCEEEEEe
Confidence                   588899886 5999999998633   4455666777644               69999999   89999999


Q ss_pred             CCCcEEEEEeCCCCc----eeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          390 YSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       390 ~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      .||.|++||+.++..    .......|...+.+++++|  ++..     +++|+.|+. ++|+.
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~-----l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT--TTCC-----EEEECSSSCEECCBC
T ss_pred             cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC--CCCE-----EEEEcCCCEEEEEec
Confidence            999999999998632    1222233455555555555  3444     555555555 55543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.4e-28  Score=236.70  Aligned_cols=280  Identities=7%  Similarity=0.038  Sum_probs=210.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ....+.+++|+|++.++++++.++.|++||+.+++..                      .......+.+|.         
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------~~~~~~~~~~~~---------  169 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----------------------RLSPPEKYKKKL---------  169 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----------------------EECCCHHHHTTC---------
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----------------------eecCcccccccC---------
Confidence            3455779999998888888888999999998877541                      000001345676         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ..|.+++|  ++++.++++++.|+.|++||+.+++....                                      
T Consensus       170 ---~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~--------------------------------------  206 (433)
T 3bws_A          170 ---GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKAT--------------------------------------  206 (433)
T ss_dssp             ---CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEE--------------------------------------
T ss_pred             ---CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEE--------------------------------------
Confidence               88999999  57889999999999999999988765443                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                               +..|...+.+++|+|+++.++ ++ .|+.|++||+++ +.....       +. ....+.+++|+|++ ..
T Consensus       207 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~-------~~-~~~~~~~~~~~~~g-~~  267 (433)
T 3bws_A          207 ---------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRK-------TD-KIGLPRGLLLSKDG-KE  267 (433)
T ss_dssp             ---------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEE-------CC-CCSEEEEEEECTTS-SE
T ss_pred             ---------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEE-------ec-CCCCceEEEEcCCC-CE
Confidence                     256788899999999999885 55 799999999984 444433       22 23458999999999 88


Q ss_pred             EEEEe--------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEE
Q 011368          269 LAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKL  338 (487)
Q Consensus       269 l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~i  338 (487)
                      +++++        .|+.|++||+++++..    ..+.              |...+..++|+|+++.++. +. ++.|++
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIG--------------PPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEE--------------EEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCccccCCCeEEEEECCCCcEE----eecc--------------CCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            88887        5889999999987643    2222              1357889999999986654 44 599999


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC---------------CCcEEEEEeCCCC
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---------------SNLLRIFSHGVGS  403 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~---------------dg~i~iwd~~~~~  403 (487)
                      ||+.+ ++.+..+......                .+++|+|+|++|++++.               ||.|++||+.+++
T Consensus       330 ~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          330 YDLKE-KKVQKSIPVFDKP----------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             EETTT-TEEEEEEECSSSE----------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             EECCC-CcEEEEecCCCCC----------------CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            99986 7777666533221                58999999999988876               5799999998763


Q ss_pred             ceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEec--CCe
Q 011368          404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNS  481 (487)
Q Consensus       404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s--~~~  481 (487)
                      . ...+.                                               ....+.+++|+|||++|++++  ++.
T Consensus       393 ~-~~~~~-----------------------------------------------~~~~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          393 V-KEFWE-----------------------------------------------AGNQPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             E-EEEEE-----------------------------------------------CSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred             E-EEEec-----------------------------------------------CCCCCceEEEcCCCCEEEEEECCCCe
Confidence            2 21111                                               112567999999999998765  566


Q ss_pred             EEEEe
Q 011368          482 LFFHY  486 (487)
Q Consensus       482 ~~i~~  486 (487)
                      +++|.
T Consensus       425 i~v~~  429 (433)
T 3bws_A          425 IRVYR  429 (433)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4.8e-27  Score=222.78  Aligned_cols=309  Identities=11%  Similarity=0.080  Sum_probs=217.4

Q ss_pred             ccccCcEEEEEEcCCCCEE-EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      +.+...+.+++|+|+|++| ++++.|+.|++||..+++.                           ...+..+       
T Consensus        28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~-------   73 (391)
T 1l0q_A           28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG-------   73 (391)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS-------
T ss_pred             eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC-------
Confidence            3344569999999999977 6777899999999877653                           2334433       


Q ss_pred             cccccccceeEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                            ..+.+++|  +|++++|+.+ +.++.|++||+.+++....                                  
T Consensus        74 ------~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~----------------------------------  111 (391)
T 1l0q_A           74 ------SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT----------------------------------  111 (391)
T ss_dssp             ------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE----------------------------------
T ss_pred             ------CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEE----------------------------------
Confidence                  46899999  5788877554 5679999999998875543                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                    ..+...+.+++|+|+++.+ +++ .++.|++||+.+ ++....+       .. ...+.+++|+|+
T Consensus       112 --------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~-------~~-~~~~~~~~~~~d  168 (391)
T 1l0q_A          112 --------------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTV-------SV-GRSPKGIAVTPD  168 (391)
T ss_dssp             --------------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEE-------EC-CSSEEEEEECTT
T ss_pred             --------------EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEE-------ec-CCCcceEEECCC
Confidence                          2234568999999999987 567 899999999984 4444332       22 345799999999


Q ss_pred             CCCEE-EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----CCeEEEE
Q 011368          265 YCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLW  339 (487)
Q Consensus       265 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d~~i~iw  339 (487)
                      + ..+ ++++.++.|++||+++++..    ..+..              ...+.+++|+|++++|++++    ++.|++|
T Consensus       169 g-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          169 G-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             S-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             C-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            9 666 67778999999999987643    33333              35789999999999888764    4999999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEEEeCCCCceeEEEeccCCcccc
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      |+.+ ++.+..+..+...                .+++|+|++++| ++++.|+.|++||+.++ .....+..+..+...
T Consensus       230 d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~  291 (391)
T 1l0q_A          230 DTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAVGKNPYAS  291 (391)
T ss_dssp             ETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEECC
T ss_pred             ECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCCcc
Confidence            9987 7777777766543                489999999987 67789999999999987 456677766655321


Q ss_pred             ---ce------------EeeCCccccccc---cceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEe
Q 011368          419 ---PI------------LQAAPRARRSSL---SNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA  477 (487)
Q Consensus       419 ---~~------------~~~~~~~~~~~~---~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~  477 (487)
                         +.            |+.........+   ..+...+.+.. .+|+.+....  .....+  ...|+|+|.+.+..
T Consensus       292 ~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~--~~~~~~--~~~~~~~g~y~~~~  365 (391)
T 1l0q_A          292 GQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS--SKKQNP--THTYSETGIYTVRL  365 (391)
T ss_dssp             SSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE--ECSSSC--EECCSSCEEEEEEE
T ss_pred             ceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc--cCcCCC--eEEeCCCceEEEEE
Confidence               11            221100000000   11455555665 7885543221  122222  35799999887643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.7e-28  Score=229.20  Aligned_cols=259  Identities=15%  Similarity=0.169  Sum_probs=195.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|...|++++|+|++++|++|+.||.|++||+.+++.                            ..+.+|.      
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----------------------------~~~~~~~------  127 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA----------------------------IQIAQHD------  127 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------EEEEECS------
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc----------------------------eeecccc------
Confidence            345899999999999999999999999999999887753                            2355677      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|++++++.+|++++.|+.|++||+.+++.....                                  
T Consensus       128 ------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------------------------  167 (368)
T 3mmy_A          128 ------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL----------------------------------  167 (368)
T ss_dssp             ------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE----------------------------------
T ss_pred             ------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE----------------------------------
Confidence                  8899999988889999999999999999999987654431                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                   .. ...+.++.+.+  ..++++ .++.+++|+++........+      ...+...+.++.+.+.. 
T Consensus       168 -------------~~-~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-  224 (368)
T 3mmy_A          168 -------------QL-PERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------ESPLKHQHRCVAIFKDK-  224 (368)
T ss_dssp             -------------EC-SSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------CCSCSSCEEEEEEEECT-
T ss_pred             -------------ec-CCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------cccccCCCceEEEcccC-
Confidence                         22 23566666653  467777 99999999999655544432      12344456677776654 


Q ss_pred             CE----EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368          267 NL----LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       267 ~~----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~  341 (487)
                      ..    +++++.||.|++||++..... .....+..|... .......+|...|.+++|+|++++|++++ ||.|++||+
T Consensus       225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          225 QNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSN-GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             TSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC-----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecc-cccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence            44    999999999999999986321 122455554221 11122234455899999999999999986 699999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      .+ ++++..+..|...+               ++++|+|+|++|++++.|+..+.|++.+
T Consensus       303 ~~-~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          303 DA-RTKLKTSEQLDQPI---------------SACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             TT-TEEEEECCCCSSCE---------------EEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CC-CcEEEEecCCCCCc---------------eEEEECCCCCeEEEEecccccccccccC
Confidence            97 88888888887754               6999999999999999998666666543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.2e-28  Score=232.78  Aligned_cols=259  Identities=8%  Similarity=0.021  Sum_probs=193.3

Q ss_pred             cccCcEEEEEEcCCCCEE-EEEecCCcEEEEEee--CCcCCCCcccchhhhhccccccccCCCcceeEeeec--CCCccc
Q 011368           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF  104 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l-~~g~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~  104 (487)
                      .|.+.|++++|+|++++| ++|+.||.|+||++.  +++.                           ...+.  .|.   
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~---  149 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS---  149 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence            467789999999999996 899999999999998  5543                           23343  455   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                               ..|.+++|  +|++.+|++++.|+.|++|++.++.....                                
T Consensus       150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------------------------  186 (450)
T 2vdu_B          150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF--------------------------------  186 (450)
T ss_dssp             ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------
T ss_pred             ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------
Confidence                     78999999  68899999999999999999987653310                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCC---CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                +.. .+.+|...|++++|+|+   +++|++| .|+.|++||+.++. ....+      +.+|...|.+++
T Consensus       187 ----------~~~-~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~------~~~h~~~v~~~~  248 (450)
T 2vdu_B          187 ----------TQE-PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-IVDKW------LFGHKHFVSSIC  248 (450)
T ss_dssp             ----------CCC-CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-CEEEE------CCCCSSCEEEEE
T ss_pred             ----------cce-eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-eeeee------ecCCCCceEEEE
Confidence                      000 13689999999999999   9999999 99999999998544 33221      457999999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccc-cC-----------ccccccccccceeEEEEcCCCCEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HG-----------SKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~-----------~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                      |+ ++ .+|++++.|+.|++||+++++..    ..+..+... +.           ...........|.+++|+|++++|
T Consensus       249 ~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          249 CG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             EC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            99 88 99999999999999999998754    334321100 00           000001234679999999999999


Q ss_pred             EEEe--CCeEEEEeC--CCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC------CCcEE
Q 011368          329 LSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLR  395 (487)
Q Consensus       329 ~s~~--d~~i~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~------dg~i~  395 (487)
                      +++.  ++.|++|++  .. +   ..+..+..+. .+               ++++|+|++.++++++.      +..|.
T Consensus       323 ~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~~-~v---------------~~~~~~~~~~~v~~~~~~~~~~~~~~i~  385 (450)
T 2vdu_B          323 AFFVEATKCIIILEMSEKQ-KGDLALKQIITFPY-NV---------------ISLSAHNDEFQVTLDNKESSGVQKNFAK  385 (450)
T ss_dssp             EEEETTCSEEEEEEECSSS-TTCEEEEEEEECSS-CE---------------EEEEEETTEEEEEECCTTCCSSCCCSEE
T ss_pred             EEEECCCCeEEEEEeccCC-CCceeeccEeccCC-ce---------------EEEEecCCcEEEEEecccCCCCCCcceE
Confidence            9875  499999999  43 4   4556666662 22               59999996544444443      55689


Q ss_pred             EEEeCCC
Q 011368          396 IFSHGVG  402 (487)
Q Consensus       396 iwd~~~~  402 (487)
                      +|.+...
T Consensus       386 v~~~~~~  392 (450)
T 2vdu_B          386 FIEYNLN  392 (450)
T ss_dssp             EEEEETT
T ss_pred             EEEEEcC
Confidence            9988654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=7.4e-27  Score=221.50  Aligned_cols=224  Identities=10%  Similarity=0.118  Sum_probs=173.2

Q ss_pred             CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (487)
Q Consensus        45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~  124 (487)
                      .++++++.|+.|++||+.+++.                           ...+..|.             .+.+++|  +
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~---------------------------~~~~~~~~-------------~~~~~~~--s   40 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV---------------------------TATIPVGS-------------NPMGAVI--S   40 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE---------------------------EEEEECSS-------------SEEEEEE--C
T ss_pred             EEEEEcCCCCEEEEEECCCCeE---------------------------EEEeecCC-------------CcceEEE--C
Confidence            4678888999999999887654                           45566554             4899999  6


Q ss_pred             CCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       125 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      ++++++ ++++.|+.|++||+.+++....                                                ..+
T Consensus        41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------------------------------------------------~~~   72 (391)
T 1l0q_A           41 PDGTKVYVANAHSNDVSIIDTATNNVIAT------------------------------------------------VPA   72 (391)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTTEEEEE------------------------------------------------EEC
T ss_pred             CCCCEEEEECCCCCeEEEEECCCCeEEEE------------------------------------------------EEC
Confidence            788876 6677999999999988876543                                                122


Q ss_pred             CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE-EEEeCCCeEEE
Q 011368          204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRL  280 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~i  280 (487)
                      ...+.+++|+|+++.|++ + .++.|++||+.++ +....+       . +...+.+++|+|++ +.+ ++++.++.|++
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~-------~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTV-------K-TGKSPLGLALSPDG-KKLYVTNNGDKTVSV  142 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE-------E-CSSSEEEEEECTTS-SEEEEEETTTTEEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEE-------e-CCCCcceEEECCCC-CEEEEEeCCCCEEEE
Confidence            338999999999998755 5 7799999999944 444332       2 33468999999999 766 67888999999


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-EEe-CCeEEEEeCCCCCceeeeeecccccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLR  358 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~  358 (487)
                      ||+++++..    ..+..              ...+..++|+|++++|+ ++. ++.|++||+++ ++.+..+..+... 
T Consensus       143 ~d~~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-  202 (391)
T 1l0q_A          143 INTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKVEAAP-  202 (391)
T ss_dssp             EETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSEE-
T ss_pred             EECCCCcEE----EEEec--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEecCCCc-
Confidence            999987654    44444              24678999999999885 554 49999999987 6666666544322 


Q ss_pred             cccccccCCCCcceeeEEEEcCCCCEEEEEc---CCCcEEEEEeCCCC
Q 011368          359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGS  403 (487)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~---~dg~i~iwd~~~~~  403 (487)
                                     ..++|+|++++|++++   .++.|++||+.+++
T Consensus       203 ---------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          203 ---------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             ---------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             ---------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence                           5899999999999888   68999999998773

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.7e-28  Score=224.80  Aligned_cols=259  Identities=10%  Similarity=0.044  Sum_probs=181.2

Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      +++.++++|+.||+|++||+.+++.....                                               .  .
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~-----------------------------------------------~--~   76 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTI-----------------------------------------------T--T   76 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEE-----------------------------------------------E--E
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEE-----------------------------------------------e--c
Confidence            56789999999999999999988755431                                               1  3


Q ss_pred             CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC-----CCCCCCCcEEEEEEec--CCCCEEEEEeCCC
Q 011368          205 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-----NMDDLTEVITSAEFHP--IYCNLLAYSSSRG  276 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg  276 (487)
                      ..|.++.++|+   ++++ .|++|++|+....   ..+++....     ...+|...|.+++|+|  ++ .++++++.||
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg  149 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRG  149 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTE---EEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTC
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCc---eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCC
Confidence            45677778887   7788 9999999987621   111111100     1125668899999999  98 9999999999


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee-eeeec-
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV-ATFKI-  353 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~-~~~~~-  353 (487)
                      .|++||+++++..    .....            .|...+.+++|+|+|.+|++|+ |+.|++||+++ +..+ ..+.. 
T Consensus       150 ~i~~wd~~~~~~~----~~~~~------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~  212 (343)
T 3lrv_A          150 TIGFQSYEDDSQY----IVHSA------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSRFPVD  212 (343)
T ss_dssp             CEEEEESSSSCEE----EEECC------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEECCCC
T ss_pred             cEEEEECCCCcEE----EEEec------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccEEecc
Confidence            9999999987643    33322            1245799999999999999985 69999999997 5555 67777 


Q ss_pred             ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce--eEEEeccCCccc--cceEeeCCcccc
Q 011368          354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENR--KPILQAAPRARR  429 (487)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~--~~~~~~~~~~~~  429 (487)
                      |...+               ++++|+|++.+|++++.+ .|++||+++++..  ...+..|...+.  .++|+|  ++++
T Consensus       213 h~~~v---------------~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~  274 (343)
T 3lrv_A          213 EEAKI---------------KEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD--SGKN  274 (343)
T ss_dssp             TTSCE---------------EEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECT--TSSE
T ss_pred             CCCCE---------------EEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECC--CCCE
Confidence            77654               699999999999999954 9999999987542  222223444554  377777  6777


Q ss_pred             ccccceeeecc-cce-ecCCCCCccccccccCCCeEEEEEcC---CCCEEEEecCCe
Q 011368          430 SSLSNLTRGLY-RQA-HENSSSGHHELSYNLSSKLLHLAWHP---TTNLIACANGNS  481 (487)
Q Consensus       430 ~~~~~l~~g~~-~~~-~~w~~~~~~~~~~~~~~~v~~~~~sp---d~~~la~~s~~~  481 (487)
                           |++++. ++. ++|+....... ... .++..++|+|   +...|++++.|+
T Consensus       275 -----l~~~s~~d~~i~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          275 -----MIAYSNESNSLTIYKFDKKTKN-WTK-DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             -----EEEEETTTTEEEEEEECTTTCS-EEE-EEEEECCC----CCCCEEEEEEETT
T ss_pred             -----EEEecCCCCcEEEEEEcccccc-eEe-cCceeEecCccccccceeEEEecCC
Confidence                 888776 777 99943211110 001 4566778888   777777766443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.3e-26  Score=206.59  Aligned_cols=271  Identities=10%  Similarity=0.057  Sum_probs=176.1

Q ss_pred             EEEEEEcCCCC---EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           35 VSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        35 V~~~~~s~~~~---~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      +.++-|-.-|-   -++++++ ..|++|+..++.                        ..+.+.+++.|+..   +..+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~------------------------~~~~~~~~~~~~~~---v~~~~   93 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW------------------------QWEKLYTWHFAEVP---VLQIV   93 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSS------------------------BEEEEEEEECCSSC---EEEEC
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc------------------------cceeeEEEeccCce---eEEEE
Confidence            66677765442   5666665 589999988762                        34556777777621   11111


Q ss_pred             cc----------------cceeEEEEEecCC----CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368          112 IE----------------EKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus       112 ~~----------------~~I~~v~~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      .-                ..|.+|+|  +|+    ++.+++++.+  +++|++.++++...........+..+.+.+ + 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~-d-  167 (356)
T 2w18_A           94 PVPDVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAE-D-  167 (356)
T ss_dssp             CCTTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECT-T-
T ss_pred             EcCcccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECC-C-
Confidence            11                36788888  567    7888887744  778888776655442222222222222211 1 


Q ss_pred             ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC---CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC
Q 011368          172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  247 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~  247 (487)
                                           ++.+.. +..|...++.++|+|   ++..|+++ .|++|+|||+++ ++++..+     
T Consensus       168 ---------------------G~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL-----  219 (356)
T 2w18_A          168 ---------------------GGGKEN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKM-----  219 (356)
T ss_dssp             ---------------------SCEEEE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEE-----
T ss_pred             ---------------------Cceeee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEE-----
Confidence                                 112222 368888899999998   78999999 999999999995 4455543     


Q ss_pred             CCCCC---CCcEEEEEEecCCCCEE------------EEEeCCCeEEEEEccCCccccccceeecccccccCcccccccc
Q 011368          248 NMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  312 (487)
Q Consensus       248 ~~~~~---~~~v~~v~~~p~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  312 (487)
                        .+|   ...+.+++|+|+| .++            ++|+.|++|++||..+++.+    ..+...        ...+|
T Consensus       220 --~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~~--------~p~Gh  284 (356)
T 2w18_A          220 --HIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLYC--------LPPGQ  284 (356)
T ss_dssp             --ECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEEC--------CCTTC
T ss_pred             --cCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEee--------ccCCC
Confidence              222   3467888999999 766            56788999999999988654    222110        00133


Q ss_pred             ccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          313 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       313 ~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      ...+.+..++  +.++++++ |++|+|||+.+ ++.+.++.+|...+.              ..++|||||++|++|+.|
T Consensus       285 ~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafSPDG~~LaSGS~D  347 (356)
T 2w18_A          285 AGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWSGTDSHLLAGQKD  347 (356)
T ss_dssp             CCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEECSSSSEEEEECTT
T ss_pred             cceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEECCCCCEEEEEECC
Confidence            4444444444  77899886 69999999997 899999998876431              258999999999999999


Q ss_pred             CcEEEEEe
Q 011368          392 NLLRIFSH  399 (487)
Q Consensus       392 g~i~iwd~  399 (487)
                      ++|+|||+
T Consensus       348 ~TIklWd~  355 (356)
T 2w18_A          348 GNIFVYHY  355 (356)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEecC
Confidence            99999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.6e-26  Score=237.81  Aligned_cols=332  Identities=8%  Similarity=0.055  Sum_probs=225.4

Q ss_pred             cCcEEEEEEcCCCCEEEEEec-CC-----cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCc---
Q 011368           32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP---  102 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---  102 (487)
                      ...|.+++|||||++|++++. |+     .|++||+.+++..                           ..+..+..   
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~   88 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG   88 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence            446999999999999999998 88     8999999887531                           11111110   


Q ss_pred             ---------ccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---ceeEeeecCCCCceeeeeccccc
Q 011368          103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus       103 ---------~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                               .......+.....|.+++|  +|||++|++++. +.|++||+.++   ....                   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------  146 (741)
T 2ecf_A           89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------  146 (741)
T ss_dssp             ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------
T ss_pred             cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------
Confidence                     0000000000024788999  689999999886 89999999887   4332                   


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                                   +..|...+.+++|+|||+.|+++.++.|++||+.+ +....+.       .
T Consensus       147 -----------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~-g~~~~~~-------~  189 (741)
T 2ecf_A          147 -----------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLAS-GRQMQLT-------A  189 (741)
T ss_dssp             -----------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTT-TEEEECC-------C
T ss_pred             -----------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecCC-CCEEEec-------c
Confidence                                         25677889999999999999999667999999984 4333321       1


Q ss_pred             CCCC----------------cEEEEEEecCCCCEEEEEeCCC---------------------------------eEEEE
Q 011368          251 DLTE----------------VITSAEFHPIYCNLLAYSSSRG---------------------------------FVRLV  281 (487)
Q Consensus       251 ~~~~----------------~v~~v~~~p~~~~~l~~~~~dg---------------------------------~i~iw  281 (487)
                      .+..                .+.+++|+|+| +.|++++.|+                                 .|.+|
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            1221                14779999999 8888887665                                 78888


Q ss_pred             EccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe------CCeEEEEeCCCCCceeeeeecc
Q 011368          282 DMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       282 d~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~~~  354 (487)
                      |+.+ ++..    .....           ..|...+..++| |||++|+.+.      +..|++||+.+ +.....+..+
T Consensus       269 d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~  331 (741)
T 2ecf_A          269 SPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHET  331 (741)
T ss_dssp             CSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEE
T ss_pred             ECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcC
Confidence            8887 6532    11111           124578999999 9999998642      26899999987 6666655544


Q ss_pred             cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc-eEeeCCcccccccc
Q 011368          355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAAPRARRSSLS  433 (487)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~  433 (487)
                      ...           .+..+..++|+|||+++++++.||.++||.+..... ...+..+...+..+ .++|  +++.    
T Consensus       332 ~~~-----------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~--dg~~----  393 (741)
T 2ecf_A          332 SPT-----------WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE--KAGL----  393 (741)
T ss_dssp             CSS-----------CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET--TTTE----
T ss_pred             CCC-----------cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC--CCCE----
Confidence            321           000013789999999999999999888988874333 66777777777776 4887  4543    


Q ss_pred             ceeeecccc--e-ecCCC---CCccccccccCCCeEEEEEcCCCCEEEEecCC-----eEEEEe
Q 011368          434 NLTRGLYRQ--A-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGN-----SLFFHY  486 (487)
Q Consensus       434 ~l~~g~~~~--~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~-----~~~i~~  486 (487)
                      .++++..++  . ++|..   +.....+.. ...+..++|+|||+.|+....+     .++++.
T Consensus       394 l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          394 AYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             EEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence            035555554  4 78832   222333333 6678899999999998865422     366654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6.9e-26  Score=222.32  Aligned_cols=321  Identities=8%  Similarity=0.045  Sum_probs=230.2

Q ss_pred             EEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeE
Q 011368           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (487)
Q Consensus        39 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~  118 (487)
                      +|+|++.++++++.|++|.+||..+++.                           +.++..+.            . +..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~  183 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI  183 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence            4899999999999999999999887754                           35555332            2 789


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEc--cccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecccee
Q 011368          119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (487)
Q Consensus       119 v~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (487)
                      ++|  +|++++|++++.|++|++||+  .+++....                                            
T Consensus       184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~--------------------------------------------  217 (543)
T 1nir_A          184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAE--------------------------------------------  217 (543)
T ss_dssp             EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEE--------------------------------------------
T ss_pred             EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEE--------------------------------------------
Confidence            999  689999999999999999999  66554332                                            


Q ss_pred             eeecccCCCceeEEEeCC----CCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC---CCC-CcEEEEEEecCCC
Q 011368          197 KVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLT-EVITSAEFHPIYC  266 (487)
Q Consensus       197 ~~~~~~~~~~v~~i~~s~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~-~~v~~v~~~p~~~  266 (487)
                          ..+...+..++|+|    +|++++++  .+++|.+||..+ .+++..+........   -|. ..+.++.++|+++
T Consensus       218 ----i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          218 ----IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             ----EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             ----EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCcccCccccccCCceEEEEECCCCC
Confidence                12345679999999    99999887  589999999984 445555432110111   132 3789999999885


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD  344 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~  344 (487)
                      .++++...++.|.+||+.+.+.+.  ...+..              ...+..+.|+|+|++++++.  +++|.+||+.+ 
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~~--------------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-  355 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLT--VTSIGA--------------APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-  355 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCE--EEEEEC--------------CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-
T ss_pred             EEEEEECCCCeEEEEEecCCCcce--eEEecc--------------CcCccCceECCCCCEEEEEecCCCeEEEEECCC-
Confidence            677777889999999998865331  112221              34678899999999877653  49999999997 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEE-EcCC-CCEEEEEc-CCCcEEEEEeCCC------CceeEEEeccCCc
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG------SAGGITVEAGKNE  415 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d-~~~l~sg~-~dg~i~iwd~~~~------~~~~~~~~~~~~~  415 (487)
                      ++++..+.....+-+        .     ..+. ++|+ +..++++. .|++|.+||+.+.      ...+.++.+|...
T Consensus       356 g~l~~~i~~g~~ph~--------g-----~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          356 RRLSALVDVGKTPHP--------G-----RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             TEEEEEEECSSSBCC--------T-----TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             CeEEEeeccCCCCCC--------C-----CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            788777764221100        0     0222 4676 66677775 6899999999882      2568899999888


Q ss_pred             cccceEeeCCccccccccceeeec-------ccce-ecCCCC--Cccccc---------cccCCCeEEEEEcCCCCEEEE
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGL-------YRQA-HENSSS--GHHELS---------YNLSSKLLHLAWHPTTNLIAC  476 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~-------~~~~-~~w~~~--~~~~~~---------~~~~~~v~~~~~spd~~~la~  476 (487)
                      +..+.++|  +++.     |.++.       .+.. .+|+..  +.....         ..+.+.+.+++|+|||+.|.+
T Consensus       423 ~~~v~~~p--dg~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          423 SLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             CCCEECCT--TCCE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             ceEEEcCC--CCCc-----EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            88888888  6666     77765       1445 888443  222111         245678999999999999886


Q ss_pred             ec------CCeEEEEeC
Q 011368          477 AN------GNSLFFHYA  487 (487)
Q Consensus       477 ~s------~~~~~i~~~  487 (487)
                      +.      ++.+.||..
T Consensus       496 s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          496 SVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             EEECCTTSCCEEEEEET
T ss_pred             EeecCCCCCCeEEEEEC
Confidence            62      356888863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=7.5e-26  Score=217.64  Aligned_cols=239  Identities=9%  Similarity=0.071  Sum_probs=188.2

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|.+++|+|+++++++++.|+.|++||+++++.                           ...+..|.        
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------------~~~~~~~~--------  211 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------------KATVDLTG--------  211 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECSS--------
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------------EEEEcCCC--------
Confidence            5778999999999999999999999999999876653                           45666777        


Q ss_pred             cccccceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                          ..+.+++|  +++++++++ ++.|+.|++||+.+++....                                    
T Consensus       212 ----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~------------------------------------  249 (433)
T 3bws_A          212 ----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRK------------------------------------  249 (433)
T ss_dssp             ----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEE------------------------------------
T ss_pred             ----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEE------------------------------------
Confidence                78999999  477887754 55899999999988765443                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                                  ..+...+.+++|+|+++.++++ .        |+.|++||+.++ +....+        .+...+.++
T Consensus       250 ------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~--------~~~~~~~~~  308 (433)
T 3bws_A          250 ------------TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI--------GPPGNKRHI  308 (433)
T ss_dssp             ------------CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE--------EEEECEEEE
T ss_pred             ------------ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-cEEeec--------cCCCCcceE
Confidence                        2234458999999999999887 4        789999999844 443332        345578999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC------
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------  333 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d------  333 (487)
                      +|+|++..++++++.++.|++||+.+++..    ..+..              ...+.+++|+|+|++|+++..      
T Consensus       309 ~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~~~  370 (433)
T 3bws_A          309 VSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV--------------FDKPNTIALSPDGKYLYVSCRGPNHPT  370 (433)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred             EECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC--------------CCCCCeEEEcCCCCEEEEEecCCCccc
Confidence            999999335566688999999999987643    33332              467899999999998887642      


Q ss_pred             ----------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCC
Q 011368          334 ----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV  401 (487)
Q Consensus       334 ----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~  401 (487)
                                |.|++||+.+ ++.+..+..+...                .+++|+|+|++|++++. |+.|++|+++.
T Consensus       371 ~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          371 EGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                      4999999987 7777777664432                58999999999988764 99999999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=7.5e-27  Score=222.42  Aligned_cols=301  Identities=13%  Similarity=0.106  Sum_probs=213.9

Q ss_pred             cCcEEEEEEcCCC-CEEEEEe----cCC----cEEEEEe--eCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368           32 VDIVSAIEFDKTG-DYLAVGD----RGG----RVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (487)
Q Consensus        32 ~~~V~~~~~s~~~-~~l~~g~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (487)
                      ...|...+|++.| +++++|+    .||    .|+|||+  .+++..                         ....+.+|
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-------------------------~~~~~~~~  116 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-------------------------AQNSYKVN  116 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-------------------------EEEEEEEC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-------------------------eeeEEEcC
Confidence            3578888999988 5666876    467    8999999  776531                         12456777


Q ss_pred             CcccccccccccccceeEEEEEe------------cCCCcEEEEEeCC------CcEEEEEccccceeEeeecCCCCcee
Q 011368          101 EPEFDYLKSLEIEEKINRVRWCA------------APNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVS  162 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~I~~v~~~~------------~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~  162 (487)
                      .            ..+..+++.+            .+.+..++.++.+      +.|++||+.++....           
T Consensus       117 ~------------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~-----------  173 (415)
T 2hqs_A          117 K------------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV-----------  173 (415)
T ss_dssp             G------------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE-----------
T ss_pred             h------------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE-----------
Confidence            6            3344444321            1125566666543      799999998654332           


Q ss_pred             eeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCC---eEEEEEccCCCce
Q 011368          163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQC  238 (487)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~---~i~iwd~~~~~~~  238 (487)
                                                           +.+|...+.+++|+|+|+.|+++ .++   .|++||+.++ +.
T Consensus       174 -------------------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-~~  215 (415)
T 2hqs_A          174 -------------------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AV  215 (415)
T ss_dssp             -------------------------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE
T ss_pred             -------------------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-cE
Confidence                                                 25788899999999999999998 664   9999999854 33


Q ss_pred             eEEeecCCCCCCCCCCcEEEEEEecCCCCEEE-EEeCCC--eEEEEEccCCccccccceeecccccccCccccccccccc
Q 011368          239 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  315 (487)
Q Consensus       239 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  315 (487)
                      ..        +..|...+.+++|+|+| +.|+ +++.++  .|.+||+++++.     ..+..             |...
T Consensus       216 ~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~-------------~~~~  268 (415)
T 2hqs_A          216 RQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-----RQVTD-------------GRSN  268 (415)
T ss_dssp             EE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-----EECCC-------------CSSC
T ss_pred             EE--------eecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-----EeCcC-------------CCCc
Confidence            33        24566789999999999 7777 666555  499999988653     23333             3567


Q ss_pred             eeEEEEcCCCCEEEEEeC--C--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          316 ISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       316 v~~v~~s~~~~~l~s~~d--~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      +.+++|+|||++|+++++  +  .|++||+.+ +. ...+..+...               +..++|+|||++|++++.+
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~---------------~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQ---------------NQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSE---------------EEEEEECTTSSEEEEEEEC
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCc---------------ccCeEECCCCCEEEEEECc
Confidence            999999999999887653  3  788889875 43 3333333332               2589999999999988764


Q ss_pred             ---CcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc---e-ecCCC-CCccccccccCCCeE
Q 011368          392 ---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ---A-HENSS-SGHHELSYNLSSKLL  463 (487)
Q Consensus       392 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~---~-~~w~~-~~~~~~~~~~~~~v~  463 (487)
                         ..|++||+.+++.  ..+..+. .+..++|+|  +++.     |++++.++   . .+|+. ++....+..+...|.
T Consensus       332 ~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp--dg~~-----l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~  401 (415)
T 2hqs_A          332 GGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP--NGTM-----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK  401 (415)
T ss_dssp             SSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT--TSSE-----EEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred             CCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC--CCCE-----EEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence               5899999998744  3455554 788888888  6666     77776665   3 55533 445566778889999


Q ss_pred             EEEEcCCCC
Q 011368          464 HLAWHPTTN  472 (487)
Q Consensus       464 ~~~~spd~~  472 (487)
                      +++|+|...
T Consensus       402 ~~~~~~~~~  410 (415)
T 2hqs_A          402 FPAWSPYLH  410 (415)
T ss_dssp             EEEECCCCC
T ss_pred             CCccccccc
Confidence            999999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=1.5e-24  Score=202.30  Aligned_cols=270  Identities=10%  Similarity=0.039  Sum_probs=191.7

Q ss_pred             EeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      +..+++|.            ..|.+++|  +|++++|++|+.++ +++|++..++....                     
T Consensus        12 ~~~~~~h~------------~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~~---------------------   55 (355)
T 3vu4_A           12 IVPENHVS------------NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIMS---------------------   55 (355)
T ss_dssp             -------C------------CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEEE---------------------
T ss_pred             ccccccCC------------CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceeee---------------------
Confidence            34567787            89999999  68999999888775 78999887654322                     


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                                                  .+...+..+++.++++.++ ++ .|++|++||..++ ..+..+        .
T Consensus        56 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~~~~--------~   98 (355)
T 3vu4_A           56 ----------------------------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDVSRI--------K   98 (355)
T ss_dssp             ----------------------------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEEEEE--------E
T ss_pred             ----------------------------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEEEEE--------E
Confidence                                        1122477888888888875 45 8899999999854 444332        2


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCC-ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      +...|.++.|+++.   ++++ .++.|++||+.++ +.+    ..+..                ....+++++  .+++.
T Consensus        99 ~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~----~~~~~----------------~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           99 VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRI----TDDIR----------------FGGVCEFSN--GLLVY  152 (355)
T ss_dssp             CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBS----SCCEE----------------EEEEEEEET--TEEEE
T ss_pred             CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceee----EEecc----------------CCceEEEEc--cEEEE
Confidence            55689999999864   4444 4789999999987 432    22221                234456666  56665


Q ss_pred             --Ee-CCeEEEEeCCCCCc---------------e-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          331 --RD-YMNLKLWDIRMDST---------------P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       331 --~~-d~~i~iwd~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                        |+ +|.|++||+.+ +.               + +..+.+|...+               ++++|+|+|++|++|+.|
T Consensus       153 ~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---------------~~~~~s~~g~~l~s~s~d  216 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQS-SGSATTQDQGVQQKAILGKGVLIKAHTNPI---------------KMVRLNRKSDMVATCSQD  216 (355)
T ss_dssp             EESSCTTCEEEEECCC-------------------CCEEECCCSSCE---------------EEEEECTTSSEEEEEETT
T ss_pred             eCCCcCcEEEEEECCC-CCccccccccccccccCcccEEEEccCCce---------------EEEEECCCCCEEEEEeCC
Confidence              33 59999999986 33               2 67778887754               699999999999999999


Q ss_pred             Cc-EEEEEeCCCCceeEEEe-c-cCCccccceEeeCCccccccccceeeecccce-ecCCCCCccc----cc--------
Q 011368          392 NL-LRIFSHGVGSAGGITVE-A-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE----LS--------  455 (487)
Q Consensus       392 g~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~----~~--------  455 (487)
                      |+ |+|||+.+++ ....+. + |...|.+++|+|  ++++     |++++.|+. ++|+......    ..        
T Consensus       217 ~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~--~~~~-----l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  288 (355)
T 3vu4_A          217 GTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWST--DGSK-----LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY  288 (355)
T ss_dssp             CSEEEEEETTTCC-EEEEEECTTCCSCEEEEEECT--TSCE-----EEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred             CCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEECC--CCCE-----EEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence            98 9999999884 466676 5 999999999998  6777     999999999 9995432210    00        


Q ss_pred             -------------cccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          456 -------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       456 -------------~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                   .........++|+||++.|++++.|+ +++|.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence                         00112236689999999999998665 66664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=5.6e-24  Score=226.27  Aligned_cols=355  Identities=9%  Similarity=0.058  Sum_probs=237.1

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecC------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (487)
                      ....|...|.+++|||||++||+++.+      ..|++|++.+++                            ...+..|
T Consensus        47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~----------------------------~~~lt~~   98 (1045)
T 1k32_A           47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----------------------------IKRITYF   98 (1045)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----------------------------EEECCCC
T ss_pred             EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC----------------------------eEEcccC
Confidence            345688899999999999999988643      378899987664                            2556777


Q ss_pred             Ccccccccccccccce-------eEEEEEecCCCcEEEEEeCC------CcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368          101 EPEFDYLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~I-------~~v~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (487)
                      .            ..+       ..++|  +|||+++++++.+      ..|.+|++.+++...+.....    ..+.++
T Consensus        99 ~------------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----~~~~~s  160 (1045)
T 1k32_A           99 S------------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA----THILFA  160 (1045)
T ss_dssp             C------------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC----SEEEEE
T ss_pred             C------------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCc----ceeeeC
Confidence            6            556       89999  6888877777644      357778887776544332211    111111


Q ss_pred             c---------------------------------------------------cccccccccCCCCcceeeeeeeeccc-e
Q 011368          168 L---------------------------------------------------AEKNFMNEHNPPSFAHGYHLEWTENM-A  195 (487)
Q Consensus       168 ~---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~  195 (487)
                      +                                                   ++ .++.........  ....++... .
T Consensus       161 pG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~--~l~~~~~~g~~  237 (1045)
T 1k32_A          161 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFG--QIYSTDLDGKD  237 (1045)
T ss_dssp             TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSC--EEEEEETTSCS
T ss_pred             CCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCce--EEEEEeCCCCc
Confidence            1                                                   11 111111111100  011111111 1


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCC----CCCCCCCCcEEEEEEe-cCCCCEEE
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFH-PIYCNLLA  270 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~v~~~-p~~~~~l~  270 (487)
                      .+. +..|. .+...+|+|||+.|+++.++.|++|++. ..... .+....    .....|...+.+++|+ |+| +.|+
T Consensus       238 ~~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la  312 (1045)
T 1k32_A          238 LRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIA  312 (1045)
T ss_dssp             CEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEE
T ss_pred             ceE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEee-eeccCcccccccccccccccceeeecCCCC-CEEE
Confidence            222 23343 4667899999999999988999999995 33332 211000    0011244568899999 999 8888


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCcccccccccc-ceeEEEEcCCCCEEEEEeC-CeEE-EEeCCCCCce
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY-MNLK-LWDIRMDSTP  347 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~~d-~~i~-iwd~~~~~~~  347 (487)
                      +++ ++.|.+|++..+..     ..+..             |.. .+..++|+ ||+.|+.+++ +.+. +||+.. +..
T Consensus       313 ~~~-~~~i~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~  371 (1045)
T 1k32_A          313 FVS-RGQAFIQDVSGTYV-----LKVPE-------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKA  371 (1045)
T ss_dssp             EEE-TTEEEEECTTSSBE-----EECSC-------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCE
T ss_pred             EEE-cCEEEEEcCCCCce-----EEccC-------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCc
Confidence            887 78999999887653     22222             244 78999999 9999998765 7888 889875 433


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  427 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  427 (487)
                       ..+..+...               +..++|||||++|++++.++.|++||+.+++ ....+..|...+..++|+|  ++
T Consensus       372 -~~l~~~~~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~Sp--DG  432 (1045)
T 1k32_A          372 -EKFEENLGN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISD--NS  432 (1045)
T ss_dssp             -EECCCCCCS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECT--TS
T ss_pred             -eEecCCccc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECC--CC
Confidence             333344332               2589999999999999999999999999874 4555668999999999998  77


Q ss_pred             ccccccceeeecccc----------e-ecCCCC-CccccccccCCCeEEEEEcCCCCEEEEecCC
Q 011368          428 RRSSLSNLTRGLYRQ----------A-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGN  480 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~----------~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~s~~  480 (487)
                      +.     |++++.+.          . .+|+.. ........+...+..++|+|||+.|++++.+
T Consensus       433 ~~-----la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          433 RF-----IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             CE-----EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             Ce-----EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            76     77666543          4 788443 2345556777888999999999999988753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=6.2e-24  Score=202.27  Aligned_cols=243  Identities=14%  Similarity=0.117  Sum_probs=185.9

Q ss_pred             CCEEEEEecC------CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccccee
Q 011368           44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (487)
Q Consensus        44 ~~~l~~g~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~  117 (487)
                      +..++.++.+      +.|++||+++..                            ...+.+|.            ..|.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------------~~~l~~~~------------~~v~  182 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------------QFVVHRSP------------QPLM  182 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS----------------------------CEEEEEES------------SCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC----------------------------CEEEeCCC------------Ccce
Confidence            5667666654      799999987543                            24566677            8899


Q ss_pred             EEEEEecCCCcEEEEEeCCC---cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      +++|  +|+|++|++++.++   .|++||+.+++...+                                          
T Consensus       183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------  218 (415)
T 2hqs_A          183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------  218 (415)
T ss_dssp             EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred             eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence            9999  68999999999875   999999998875433                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEE-Ee-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                            ..|...+.+++|+|||+.|+ ++ .++  .|++||+.++ ...        .+..|...+.+++|+|+| +.|+
T Consensus       219 ------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~~--------~l~~~~~~~~~~~~spdg-~~l~  282 (415)
T 2hqs_A          219 ------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIR--------QVTDGRSNNTEPTWFPDS-QNLA  282 (415)
T ss_dssp             ------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEE--------ECCCCSSCEEEEEECTTS-SEEE
T ss_pred             ------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CEE--------eCcCCCCcccceEECCCC-CEEE
Confidence                  56777899999999999888 55 554  4999999843 332        245677889999999999 8888


Q ss_pred             EEeC-CC--eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C---CeEEEEeCCC
Q 011368          271 YSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRM  343 (487)
Q Consensus       271 ~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d---~~i~iwd~~~  343 (487)
                      +++. ++  .|.+||+.+++.     ..+..             +...+..++|+|+|++|++++ +   ..|++||+.+
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSCC-----EECCC-------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             EEECCCCCcEEEEEECCCCCE-----EEEec-------------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            8876 45  677778887652     22222             245788999999999998764 3   5899999986


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC---cEEEEEeCCCCceeEEEeccCCccccce
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPI  420 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~  420 (487)
                       +.. ..+..+. .+               .+++|+|||++|++++.++   .|++||+..+  ....+..|.+.+..++
T Consensus       345 -~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~  404 (415)
T 2hqs_A          345 -GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPA  404 (415)
T ss_dssp             -CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEE
T ss_pred             -CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCc
Confidence             444 3344333 21               5899999999999988877   7999998743  4678899999999999


Q ss_pred             EeeC
Q 011368          421 LQAA  424 (487)
Q Consensus       421 ~~~~  424 (487)
                      |+|.
T Consensus       405 ~~~~  408 (415)
T 2hqs_A          405 WSPY  408 (415)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            9984

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=7.4e-25  Score=224.81  Aligned_cols=329  Identities=11%  Similarity=0.062  Sum_probs=210.3

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .+.+++|+|||+++++ +.||+|++||+.+++.                           ...+.+|...         .
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------~~~~~~~~~~---------~   60 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------TVLIEGKKIE---------S   60 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------EEEECTTTTT---------T
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------EEEecccccc---------c
Confidence            3678999999998876 6899999999988864                           2445555400         0


Q ss_pred             cceeEEEEEecCCCcEEEEEeCC---------CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                      ..|.+++|  +|||++|++++.+         +.+.+||+.+++...+..                              
T Consensus        61 ~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~------------------------------  108 (723)
T 1xfd_A           61 LRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP------------------------------  108 (723)
T ss_dssp             TTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC------------------------------
T ss_pred             cccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC------------------------------
Confidence            14899999  6899999998764         778899999887532210                              


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCC--CCCCC---------
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN--MDDLT---------  253 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~---------  253 (487)
                                     ..+|...+..++|+|||+.|+++.++.|++||+.+ +....+.......  +.++.         
T Consensus       109 ---------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A          109 ---------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             ---------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             ---------------CccccccccccEECCCCCEEEEEECCeEEEEECCC-CceEEEecCCCCCceECcccceeEEEEec
Confidence                           13455668899999999999999668999999985 4444332110000  00010         


Q ss_pred             CcEEEEEEecCCCCEEEEEeCCC----------------------------------eEEEEEccCCccccccceeeccc
Q 011368          254 EVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSALCDHSARILRDA  299 (487)
Q Consensus       254 ~~v~~v~~~p~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~h  299 (487)
                      ..+.+++|+|+| +.|++++.++                                  .|.+||+.+++..    ..+..+
T Consensus       173 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~----~~l~~~  247 (723)
T 1xfd_A          173 KTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD----LEMMPP  247 (723)
T ss_dssp             SSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC----EECCCC
T ss_pred             cCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee----EEeeCC
Confidence            123789999999 8898887543                                  7888888776532    222221


Q ss_pred             ccccCccccccccccceeEEEEcCCCCEEEEEe----C-CeEEEEeCCCCCceeeeeecc-cccccccccccCCCCccee
Q 011368          300 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDK  373 (487)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d-~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  373 (487)
                             ..+..+...+..++|+|||++|++..    + ..|++||+.+ ++....+..+ ...+.         ..  .
T Consensus       248 -------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~---------~~--~  308 (723)
T 1xfd_A          248 -------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLH---------RQ--N  308 (723)
T ss_dssp             -------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCC---------CC--C
T ss_pred             -------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEe---------cc--C
Confidence                   01122356789999999999887653    1 5799999986 6655554433 22110         00  0


Q ss_pred             eEEEEcCCCCEEEE--EcCCC------cEEEEE-eCCCCc-eeEEEeccCCccc-cceEeeCCccccccccceeee-ccc
Q 011368          374 FECSVSGDGLHFAT--GSYSN------LLRIFS-HGVGSA-GGITVEAGKNENR-KPILQAAPRARRSSLSNLTRG-LYR  441 (487)
Q Consensus       374 ~~~~~s~d~~~l~s--g~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~~g-~~~  441 (487)
                      ..++|||||+.|+.  +..++      .|++|| ..++.. ....+..+...+. .+.++|  +++.     |+.. ..+
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp--dg~~-----l~~~~~~~  381 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE--KGNK-----IYFLSTED  381 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET--TTTE-----EEEEESSS
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC--CCCE-----EEEEEcCC
Confidence            26899999998775  44666      466677 333320 0233333223333 357777  5655     5444 333


Q ss_pred             --ce-ecCCC--CC--ccccccc---cCCCeEEEEEcCCCCEEEEec
Q 011368          442 --QA-HENSS--SG--HHELSYN---LSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       442 --~~-~~w~~--~~--~~~~~~~---~~~~v~~~~~spd~~~la~~s  478 (487)
                        +. ++|..  ..  ....+..   +...+..++|+|||++|+...
T Consensus       382 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          382 LPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             CTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             CCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence              45 88832  21  1222222   566788999999999988654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.2e-23  Score=187.57  Aligned_cols=278  Identities=11%  Similarity=0.042  Sum_probs=173.9

Q ss_pred             eeEEEEEecCCCc--EEEEEeCCCcEEEEEccccc-eeEeeecC-CCCceeeeeccccccccccccC-CCCcceeeeeee
Q 011368          116 INRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQK-VKKIKEMD-HFPFVSSENTLLAEKNFMNEHN-PPSFAHGYHLEW  190 (487)
Q Consensus       116 I~~v~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  190 (487)
                      +.++.|- .++.+  .+++++ ...|++|+..++. ........ .+.+|..+.+.+..-.++.... +-.........+
T Consensus        42 ~~~~~~~-~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           42 VSAMFWE-RAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEC-----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             Eeeeeec-cCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            4556662 23332  455555 5689999998872 22222222 2334666666553333332221 111111111111


Q ss_pred             ecc----ceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          191 TEN----MATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       191 ~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                      ...    ...... .+|...|..+   ++++++.++   .|+.|++|++...++....       +..|...+..++|+|
T Consensus       120 spd~~~~~~~l~s-~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          120 SSDDESEKQVLLK-SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFLMPPEETILTFAE  188 (356)
T ss_dssp             ------CCEEEEE-EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEECCCSSCEEEEEE
T ss_pred             CCCccccccEEEe-CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeee-------eccCCCceeeEEeec
Confidence            111    111111 3344444443   456666663   4999999999655554432       356788888889998


Q ss_pred             ---CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE-----------
Q 011368          264 ---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-----------  329 (487)
Q Consensus       264 ---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-----------  329 (487)
                         ++ ..|++++.|++|+|||+++++.+    +++.+|.          .+...+.+++|+|+|++++           
T Consensus       189 ~~g~~-~~LaSgS~D~TIkIWDl~TGk~l----~tL~g~~----------~~v~~v~~vafSpdG~~lvs~s~~~~~w~l  253 (356)
T 2w18_A          189 VQGMQ-EALLGTTIMNNIVIWNLKTGQLL----KKMHIDD----------SYQASVCHKAYSEMGLLFIVLSHPCAKESE  253 (356)
T ss_dssp             EETST-TEEEEEETTSEEEEEETTTCCEE----EEEECCC-------------CCCEEEEEEETTEEEEEEC--------
T ss_pred             cCCCC-ceEEEecCCCcEEEEECCCCcEE----EEEcCCC----------cceeeeEEEEECCCCCEEEEeccCCCccee
Confidence               77 99999999999999999999866    6666531          1134678889999998874           


Q ss_pred             -EEe-CCeEEEEeCCCCCceeeeee-----cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          330 -SRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       330 -s~~-d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                       +|+ |++|++||..+ ++.+..+.     +|...               +.+..+  ++.++++|+.|++|+|||+.++
T Consensus       254 aSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~---------------~lsg~~--sg~~lASgS~DgTIkIWDl~tG  315 (356)
T 2w18_A          254 SLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGR---------------FLEGDV--KDHCAAAILTSGTIAIWDLLLG  315 (356)
T ss_dssp             ----CCEEEEEEETTT-TEEEEEEEECCCTTCCCC---------------EEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             eccCCCcEEEEEECCC-CEEEEEEEeeccCCCcce---------------eEcccc--CCCEEEEEcCCCcEEEEECCCC
Confidence             454 59999999987 77665542     33221               023344  4889999999999999999998


Q ss_pred             CceeEEEeccCCccc-cceEeeCCccccccccceeeecccce-ecCC
Q 011368          403 SAGGITVEAGKNENR-KPILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       403 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                       ....++.+|...+. .++|+|  ++++     |++|+.|+. ++|+
T Consensus       316 -k~l~tL~gH~~~vvs~vafSP--DG~~-----LaSGS~D~TIklWd  354 (356)
T 2w18_A          316 -QCTALLPPVSDQHWSFVKWSG--TDSH-----LLAGQKDGNIFVYH  354 (356)
T ss_dssp             -SEEEEECCC--CCCCEEEECS--SSSE-----EEEECTTSCEEEEE
T ss_pred             -cEEEEecCCCCCeEEEEEECC--CCCE-----EEEEECCCcEEEec
Confidence             55788999988766 488998  7787     999999999 9994

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1e-23  Score=215.65  Aligned_cols=289  Identities=8%  Similarity=0.003  Sum_probs=191.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|.+++|  +|+ ..++.+ .++.|++||+.+++...+                                         
T Consensus        82 ~~v~~~~~--spd-~~~~~~-~~~~i~~~d~~~~~~~~l-----------------------------------------  116 (706)
T 2z3z_A           82 FPSFRTLD--AGR-GLVVLF-TQGGLVGFDMLARKVTYL-----------------------------------------  116 (706)
T ss_dssp             CCCEEEEE--TTT-TEEEEE-ETTEEEEEETTTTEEEEE-----------------------------------------
T ss_pred             cCceeEEE--CCC-CeEEEE-ECCEEEEEECCCCceEEc-----------------------------------------
Confidence            45899999  577 555555 459999999988865443                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCC----CceeEEeecCCC-------CCCCCCCcEEEEEEe
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPS-------NMDDLTEVITSAEFH  262 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~----~~~~~~~~~~~~-------~~~~~~~~v~~v~~~  262 (487)
                             ..+...+.+++|+|||+.|+++.++.|++||+.+.    +....+......       ..+.+...+.++.|+
T Consensus       117 -------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S  189 (706)
T 2z3z_A          117 -------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS  189 (706)
T ss_dssp             -------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred             -------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence                   34566788999999999999998899999999851    333322100000       000011125789999


Q ss_pred             cCCCCEEEEEe---------------------------------CCCeEEEEEccCCccccccceeecccccccCccccc
Q 011368          263 PIYCNLLAYSS---------------------------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  309 (487)
Q Consensus       263 p~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  309 (487)
                      |+| +.|++++                                 .+..|.+||+.+++..    .....           
T Consensus       190 pDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~-----------  253 (706)
T 2z3z_A          190 PKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTG-----------  253 (706)
T ss_dssp             TTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCC-----------
T ss_pred             CCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccC-----------
Confidence            999 9999887                                 4467999999887532    11111           


Q ss_pred             cccccceeEEEEcCCCCEEEEEe-CC-----eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC--C
Q 011368          310 TEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG--D  381 (487)
Q Consensus       310 ~~~~~~v~~v~~s~~~~~l~s~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d  381 (487)
                      ..|...+..++|+|||++|+++. ++     .|++||+.+ +.....+.......          ....+..++|+|  |
T Consensus       254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSN  322 (706)
T ss_dssp             SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCS
T ss_pred             CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCC
Confidence            12356799999999999888753 33     899999986 52333332111110          000013689999  9


Q ss_pred             CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcccc-ceEeeCCccccccccceeeecccc--e-ecC--CCCCccccc
Q 011368          382 GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLTRGLYRQ--A-HEN--SSSGHHELS  455 (487)
Q Consensus       382 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~g~~~~--~-~~w--~~~~~~~~~  455 (487)
                      |++|++++.||.++||.+.........+..+...+.. +.++|  +++.    .++++..++  . .+|  +........
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--dg~~----l~~~~~~~~~~~~~l~~~d~~~~~~~~  396 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--KGTR----LYFESTEASPLERHFYCIDIKGGKTKD  396 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT--TSSE----EEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred             CEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC--CCCE----EEEEecCCCCceEEEEEEEcCCCCcee
Confidence            9999999999999999987433456677777766765 67877  4443    034444444  2 555  332222333


Q ss_pred             cccCCCeEEEEEcCCCCEEEEec-CC----eEEEEeC
Q 011368          456 YNLSSKLLHLAWHPTTNLIACAN-GN----SLFFHYA  487 (487)
Q Consensus       456 ~~~~~~v~~~~~spd~~~la~~s-~~----~~~i~~~  487 (487)
                      ..+...+..++|+|||++|+.++ +.    .+++|++
T Consensus       397 l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          397 LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            44677899999999999988664 32    3888863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=1.8e-23  Score=222.42  Aligned_cols=357  Identities=10%  Similarity=0.054  Sum_probs=236.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...+.+++|+++ .++++++.|+.++||.++.....                          ...+..|.       
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~--------------------------~~~l~~~~-------  245 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD--------------------------LRKHTSFT-------  245 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS--------------------------CEECCCCC-------
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc--------------------------ceEecCCC-------
Confidence            457888999999998 67778888999999998742210                          13344443       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecC---------CCCceeeeeccccccccccccCC
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD---------HFPFVSSENTLLAEKNFMNEHNP  179 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                            .+..++|+  |+|++|+++ .++.|.+|++.......+....         ....+..+.++++++..++....
T Consensus       246 ------~~~~~~~S--pDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~  316 (1045)
T 1k32_A          246 ------DYYPRHLN--TDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR  316 (1045)
T ss_dssp             ------SSCEEEEE--ESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET
T ss_pred             ------CcceeeEc--CCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc
Confidence                  25667884  688888887 5899999999554443221100         11134556665256655554431


Q ss_pred             CCcceeeeeeeeccceeeeecccCCC-ceeEEEeCCCCCEEEEe-cCCeEE-EEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368          180 PSFAHGYHLEWTENMATKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~s~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v  256 (487)
                      .     ....|+........+..|.. .+..++|+ ||+.|+++ .+..+. +|++.. +....        +.+|...+
T Consensus       317 ~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~~~--------l~~~~~~~  381 (1045)
T 1k32_A          317 G-----QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKAEK--------FEENLGNV  381 (1045)
T ss_dssp             T-----EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCEEE--------CCCCCCSE
T ss_pred             C-----EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCceE--------ecCCccce
Confidence            1     12223322221122356777 89999999 99999998 877888 889884 33222        23677889


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C--
Q 011368          257 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--  333 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d--  333 (487)
                      ..++|+|+| +.|++++.++.|++||+.+++..    .....             |...+..++|+|||++|++++ +  
T Consensus       382 ~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~~~~~~  443 (1045)
T 1k32_A          382 FAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYGFPLKH  443 (1045)
T ss_dssp             EEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             eeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEEecCcc
Confidence            999999999 99999999999999999987643    33333             356789999999999998764 2  


Q ss_pred             --------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC--
Q 011368          334 --------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--  403 (487)
Q Consensus       334 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~--  403 (487)
                              +.|++||+.+ ++ ...+..+....               ..++|+|||++|+.++.++...+|+.....  
T Consensus       444 ~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~  506 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  506 (1045)
T ss_dssp             STTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             ccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchhccccc
Confidence                    3899999986 54 55555554322               479999999999999988777777643221  


Q ss_pred             ----------------------------------------ceeEEEeccCCccccceEeeCCccccccccceee----e-
Q 011368          404 ----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR----G-  438 (487)
Q Consensus       404 ----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~----g-  438 (487)
                                                              .....+..|...+..+.++|  ++..     +++    | 
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~--dg~~-----~~~~~~~g~  579 (1045)
T 1k32_A          507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--SSIL-----IYSVPVHGE  579 (1045)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS--SEEE-----EEECCCCCS
T ss_pred             cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC--CCeE-----EEEecccCc
Confidence                                                    11223334445556666665  5554     443    1 


Q ss_pred             ------cccce-ecC--CCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEeC
Q 011368          439 ------LYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  487 (487)
Q Consensus       439 ------~~~~~-~~w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~~  487 (487)
                            +.+.. .+|  +........  ....+..++|||||+.|++++.+.+++|.+
T Consensus       580 ~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~v~~~~~S~DG~~l~~~~~~~i~~~d~  635 (1045)
T 1k32_A          580 FAAYYQGAPEKGVLLKYDVKTRKVTE--VKNNLTDLRLSADRKTVMVRKDDGKIYTFP  635 (1045)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCCEEE--EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ccccccccCCCceEEEEECCCCcEEE--eecCcceEEECCCCCEEEEEcCCcEEEEeC
Confidence                  11222 444  332221111  116788999999999999999889999863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=5.2e-22  Score=183.58  Aligned_cols=236  Identities=11%  Similarity=0.077  Sum_probs=161.4

Q ss_pred             EEEcCCCCE-EEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        38 ~~~s~~~~~-l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      ..|.+++++ +++++.++.|.+||..+++.                           ...+..+.            ..+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~------------~~~   43 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------------LNQITLGY------------DFV   43 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECCC------------CEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------------eeeEEccC------------Ccc
Confidence            346666655 66777899999999887754                           23334333            456


Q ss_pred             eEEEEEecCCCcEEEEEe-CCCcEEEEEccccce-eEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                       .++|  +|+++++++++ .++.|.+||..+++. ...                                          
T Consensus        44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------   78 (331)
T 3u4y_A           44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVA------------------------------------------   78 (331)
T ss_dssp             -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEE------------------------------------------
T ss_pred             -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEe------------------------------------------
Confidence             8999  67888766665 489999999988875 222                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEe-cC-C--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE-
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-  269 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-  269 (487)
                           +..+..+..+++|+|++++++++ .+ +  .|.+||+.+ +.....+       . ....+.+++|+|+| +++ 
T Consensus        79 -----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~~-------~-~~~~~~~~~~spdg-~~l~  143 (331)
T 3u4y_A           79 -----IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKFISTI-------P-IPYDAVGIAISPNG-NGLI  143 (331)
T ss_dssp             -----EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEEEEEE-------E-CCTTEEEEEECTTS-SCEE
T ss_pred             -----cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC-CCeEEEE-------E-CCCCccceEECCCC-CEEE
Confidence                 13444555559999999999976 44 3  999999984 4444332       1 23446899999999 644 


Q ss_pred             EEEeCCCe-EEEEEccCCcccccc-ceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368          270 AYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS  345 (487)
Q Consensus       270 ~~~~~dg~-i~iwd~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~  345 (487)
                      ++...++. |.+|++......... ...+..              ......++|+|+|++++.+.  ++.|++||+.+ +
T Consensus       144 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~  208 (331)
T 3u4y_A          144 LIDRSSANTVRRFKIDADGVLFDTGQEFISG--------------GTRPFNITFTPDGNFAFVANLIGNSIGILETQN-P  208 (331)
T ss_dssp             EEEETTTTEEEEEEECTTCCEEEEEEEEECS--------------SSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-T
T ss_pred             EEecCCCceEEEEEECCCCcEeecCCccccC--------------CCCccceEECCCCCEEEEEeCCCCeEEEEECCC-C
Confidence            45556677 999999864322110 011111              24578999999999776553  49999999986 6


Q ss_pred             ce---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368          346 TP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS  403 (487)
Q Consensus       346 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~  403 (487)
                      +.   +..+......                ..++|+|||++|++++ .++.|.+||+.+++
T Consensus       209 ~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          209 ENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             TSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             cccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            66   5556544332                4899999999776655 57889999998874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=9.5e-22  Score=192.92  Aligned_cols=308  Identities=13%  Similarity=0.070  Sum_probs=200.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEe--eCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .+.+++|+|||++|++++.|++|++||+  .+++.                           +.++.. .          
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~---------------------------~~~i~~-g----------  221 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK---------------------------VAEIKI-G----------  221 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE---------------------------EEEEEC-C----------
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE---------------------------EEEEec-C----------
Confidence            3889999999999999999999999998  55432                           344553 2          


Q ss_pred             cccceeEEEEEecC----CCcEEEEEe-CCCcEEEEEccccceeEeeecC----------CCCceeeeeccccccccccc
Q 011368          112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMD----------HFPFVSSENTLLAEKNFMNE  176 (487)
Q Consensus       112 ~~~~I~~v~~~~~~----~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  176 (487)
                        ..+..++|  +|    +|+++++++ .+++|.+||..+++........          ..+.+..+.+.+....+++.
T Consensus       222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence              55789999  67    899999887 5899999999988776654431          12244555555544444444


Q ss_pred             cCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCC
Q 011368          177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  254 (487)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  254 (487)
                      .........  ...............+...+.++.|+|+|++++++  .+++|.+||..+ +++...+...   ...|..
T Consensus       298 ~~~~g~i~v--vd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g---~~ph~g  371 (543)
T 1nir_A          298 VKETGKVLL--VNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVG---KTPHPG  371 (543)
T ss_dssp             ETTTTEEEE--EECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECS---SSBCCT
T ss_pred             ECCCCeEEE--EEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccC---CCCCCC
Confidence            433322221  11111122221112456678899999999987654  789999999995 4555554321   123544


Q ss_pred             cEEEEEEecCCCCEEEEEe-CCCeEEEEEccCCccc---cccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          255 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      ....+ ++|++...++++. .|++|.+||+.+....   .+.++.+..             |...+..++++|+|++|++
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~-------------~g~~~~~v~~~pdg~~l~v  437 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG-------------QGGGSLFIKTHPKSSHLYV  437 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEECCTTCCEEEE
T ss_pred             CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc-------------CCCCceEEEcCCCCCcEEE
Confidence            33333 5787426777775 5899999999872110   111244554             3567788999999999999


Q ss_pred             Ee--------CCeEEEEeCCCCCcee-eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-----CCCcEEE
Q 011368          331 RD--------YMNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRI  396 (487)
Q Consensus       331 ~~--------d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-----~dg~i~i  396 (487)
                      +.        +++|.+||+.+ .+.. ..+....-.     .+.  +....+..+.|+|+|+.|+++.     .|+.|.|
T Consensus       438 ~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~-----~~~--~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v  509 (543)
T 1nir_A          438 DTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWA-----DLG--EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  509 (543)
T ss_dssp             CCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHH-----CCC--SSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE
T ss_pred             ecCCCCCcccCceEEEEECCC-CCCCeEEeechhhc-----ccC--CCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE
Confidence            75        47999999997 4443 444211000     000  0001236899999999988663     4799999


Q ss_pred             EEeCCCCceeEEEecc
Q 011368          397 FSHGVGSAGGITVEAG  412 (487)
Q Consensus       397 wd~~~~~~~~~~~~~~  412 (487)
                      ||.++++ ++.+++..
T Consensus       510 ~D~~t~~-~~~~i~~~  524 (543)
T 1nir_A          510 VDDKTLK-LKAVVKDP  524 (543)
T ss_dssp             EETTTTE-EEEEECCT
T ss_pred             EECCCce-EEEeecCC
Confidence            9999984 45666543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=2.5e-23  Score=188.87  Aligned_cols=225  Identities=12%  Similarity=0.136  Sum_probs=159.4

Q ss_pred             EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCCc
Q 011368           49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  128 (487)
Q Consensus        49 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~  128 (487)
                      .++.|+.|++||+.+++.                            ..+..|.            ..|.+++|  +|+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~   54 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK   54 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred             CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence            345789999999887653                            3344465            78999999  68999


Q ss_pred             EEEEEeCCCcEEEEEccc-cceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC-CCc
Q 011368          129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH-DFN  206 (487)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  206 (487)
                      +|++++ ++.|++||+.+ ++....                                               ...+ ...
T Consensus        55 ~l~~~~-~~~i~~~d~~~~~~~~~~-----------------------------------------------~~~~~~~~   86 (297)
T 2ojh_A           55 YLLLNS-EGLLYRLSLAGDPSPEKV-----------------------------------------------DTGFATIC   86 (297)
T ss_dssp             EEEEEE-TTEEEEEESSSCCSCEEC-----------------------------------------------CCTTCCCB
T ss_pred             EEEEEc-CCeEEEEeCCCCCCceEe-----------------------------------------------cccccccc
Confidence            998876 78999999988 765433                                               1233 467


Q ss_pred             eeEEEeCCCCCEEEEe-cC--CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE-EEeCCCeEEEEE
Q 011368          207 INSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVD  282 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~iwd  282 (487)
                      +.+++|+|+++.|+++ .+  +...+|.++........       +..+ ..+.+++|+|++ +.|+ +++.++.++||+
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEEEEEEETTEEEEEE
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEEEEECCCCceEEEE
Confidence            8999999999999987 33  45555555422222222       2222 348899999999 7666 778899999998


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPK  360 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~  360 (487)
                      ++.....   ...+..             +...+.++.|+|+|++|+.+.  ++.+++|++...+..+..+..+...+  
T Consensus       158 ~~~~~~~---~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--  219 (297)
T 2ojh_A          158 MDIDSGV---ETRLTH-------------GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD--  219 (297)
T ss_dssp             EETTTCC---EEECCC-------------SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE--
T ss_pred             EECCCCc---ceEccc-------------CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc--
Confidence            7532111   122222             356789999999999888653  58899998874355566666554422  


Q ss_pred             cccccCCCCcceeeEEEEcCCCCEEEEEcCC-----------CcEEEEEeCCCC
Q 011368          361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGS  403 (487)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----------g~i~iwd~~~~~  403 (487)
                                   ..++|+|+|++|++++.+           +.|++||+.+++
T Consensus       220 -------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          220 -------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             -------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             -------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence                         589999999999988876           569999998764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=9.4e-22  Score=183.50  Aligned_cols=254  Identities=9%  Similarity=0.009  Sum_probs=178.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEEec-------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (487)
                      .....+..++|+|+|++|++++.       ++.|.+||..+++.                           ...+...  
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~--   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------------TQAIHND--   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------------EEEEEES--
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------EEEEecC--
Confidence            34567889999999999888774       56899999887753                           2223221  


Q ss_pred             ccccccccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       103 ~~~~~~~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                                 ..+..++|  ++++++++ +...++.|.+||..+++...........                      
T Consensus        89 -----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------------------  133 (353)
T 3vgz_A           89 -----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK----------------------  133 (353)
T ss_dssp             -----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC----------------------
T ss_pred             -----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc----------------------
Confidence                       34678899  57888555 4556899999999988765442211000                      


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEE
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  258 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  258 (487)
                                     . ........+.+++|+|+++.++++   .++.|.+||..+ ......+       ..+...+.+
T Consensus       134 ---------------~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-~~~~~~~-------~~~~~~~~~  189 (353)
T 3vgz_A          134 ---------------R-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-IKLKTAI-------QNTGKMSTG  189 (353)
T ss_dssp             ---------------C-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-TEEEEEE-------CCCCTTCCC
T ss_pred             ---------------c-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-CceEEEe-------cCCCCccce
Confidence                           0 000111236889999999987775   378899999984 4444332       223445778


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeE
Q 011368          259 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNL  336 (487)
Q Consensus       259 v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i  336 (487)
                      ++|+|++ +.+++++.++.|.+||+.+++..    ..+...         ..++...+..++|+|+|+++++++ + +.|
T Consensus       190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~---------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  255 (353)
T 3vgz_A          190 LALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLL---------DDGKEHFFINISLDTARQRAFITDSKAAEV  255 (353)
T ss_dssp             CEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECC---------CSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred             EEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcC---------CCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence            9999999 99999999999999999987654    232220         011245678899999999887664 3 999


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS  403 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~  403 (487)
                      .+||+.+ ++.+..+.....                 ..++|+|+|+++++++ .++.|.+||+.+++
T Consensus       256 ~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          256 LVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            9999987 777776665432                 2799999999665554 78999999998773

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.1e-21  Score=180.25  Aligned_cols=280  Identities=14%  Similarity=0.121  Sum_probs=179.1

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecC-CcEEEEEee--CCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      .+.|...+.+++|+|+|++|++++.+ +.|.+|+++  +++.                         +.+..+..+    
T Consensus        33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~----   83 (343)
T 1ri6_A           33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP----   83 (343)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS----
T ss_pred             eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC----
Confidence            34567789999999999999988876 999999997  3321                         222333322    


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                               ..+..++|  +++++++++++ .++.|.+||+..+......                              
T Consensus        84 ---------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------  122 (343)
T 1ri6_A           84 ---------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------------------------------  122 (343)
T ss_dssp             ---------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEE------------------------------
T ss_pred             ---------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccc------------------------------
Confidence                     45789999  68888887765 4889999999533211110                              


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEe--ecCCCCCCCCCCcEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVITSA  259 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~v~~v  259 (487)
                                   ..  ......+.+++|+|+++.++++  .++.|.+||+...+......  ..    .......+.++
T Consensus       123 -------------~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~  183 (343)
T 1ri6_A          123 -------------DV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TTVEGAGPRHM  183 (343)
T ss_dssp             -------------EE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----ECSTTCCEEEE
T ss_pred             -------------cc--ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----ccCCCCCcceE
Confidence                         00  1223458899999999977765  79999999998534332211  00    01223468899


Q ss_pred             EEecCCCCEEEEEe-CCCeEEEEEccC--CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CC
Q 011368          260 EFHPIYCNLLAYSS-SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YM  334 (487)
Q Consensus       260 ~~~p~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~  334 (487)
                      +|+|++ +++++++ .++.|.+||+..  ++..  .......   .+..    ......+..++|+|+|++|+++.  ++
T Consensus       184 ~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~---~~~~----~~~~~~~~~i~~s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          184 VFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDM---MPEN----FSDTRWAADIHITPDGRHLYACDRTAS  253 (343)
T ss_dssp             EECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEEC---SCTT----CCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             EECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccc---cCcc----ccccCCccceEECCCCCEEEEEecCCC
Confidence            999999 7665554 789999999964  3211  0011111   0000    00124577899999999887543  59


Q ss_pred             eEEEEeCCCC---CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC--CCCc-eeE
Q 011368          335 NLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG--VGSA-GGI  407 (487)
Q Consensus       335 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~--~~~~-~~~  407 (487)
                      .|++||+...   .+.+..+..+...                ..++|+|+|++|++++ .++.|.+|++.  ++.. ...
T Consensus       254 ~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  317 (343)
T 1ri6_A          254 LITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG  317 (343)
T ss_dssp             EEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence            9999999731   2233333333321                4899999999888887 67999999665  4422 233


Q ss_pred             EEeccCCccccceEee
Q 011368          408 TVEAGKNENRKPILQA  423 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~  423 (487)
                      .+... .....+++.+
T Consensus       318 ~~~~g-~~p~~i~~~~  332 (343)
T 1ri6_A          318 RYAVG-QGPMWVVVNA  332 (343)
T ss_dssp             EEECS-SSCCEEEEEE
T ss_pred             ccccC-CCCeeEEEEc
Confidence            33332 2334555555

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=6.5e-22  Score=203.48  Aligned_cols=308  Identities=10%  Similarity=0.030  Sum_probs=196.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeC-CC-----cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      ..|..++|  +|||++|++++. |+     .|++||+.+++...........         +++..+....         
T Consensus        37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~---------~~~~~~~~~~---------   96 (741)
T 2ecf_A           37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL---------PGTETLSDEE---------   96 (741)
T ss_dssp             CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred             CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc---------cccccccchh---------
Confidence            56899999  689999999988 88     8999999988766543211100         0111110000         


Q ss_pred             eeeeccceeeee-cccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCC--ceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          188 LEWTENMATKVY-PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                            ...+.. .......+.+++|+|||+.|+++.++.|++||+.++.  ..        ..+..+...+.+++|+|+
T Consensus        97 ------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~--------~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A           97 ------KARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV--------RQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             ----------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC--------CBCCCSSSCEEEEEECTT
T ss_pred             ------hhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE--------EEcccCCcccccccCCCC
Confidence                  000000 0011244789999999999999955999999998541  22        235567788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeeccccccc--C-ccccccccccceeEEEEcCCCCEEEEEe-CC------
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--G-SKSFFTEIIASISDIKFANDGQHLLSRD-YM------  334 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~--~-~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~------  334 (487)
                      | +.|++++. +.|.+||+.+++..    +....+....  . ......+....+..+.|||||++|++++ ++      
T Consensus       163 G-~~la~~~~-~~i~~~d~~~g~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~  236 (741)
T 2ecf_A          163 G-GFVSFIRG-RNLWVIDLASGRQM----QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ  236 (741)
T ss_dssp             S-SEEEEEET-TEEEEEETTTTEEE----ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred             C-CEEEEEeC-CcEEEEecCCCCEE----EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence            9 99988874 58999999887532    2222210000  0 0000000012257899999999998764 33      


Q ss_pred             ---------------------------eEEEEeCCCCCceeeeee--cccccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368          335 ---------------------------NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  385 (487)
Q Consensus       335 ---------------------------~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  385 (487)
                                                 .|++||+.+.++......  .+...               +..++| |||++|
T Consensus       237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~-pDg~~l  300 (741)
T 2ecf_A          237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY---------------LARVNW-RDPQHL  300 (741)
T ss_dssp             EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE---------------EEEEEE-EETTEE
T ss_pred             ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE---------------EEEEEe-CCCCEE
Confidence                                       788888864122222221  12221               258999 999999


Q ss_pred             EEEcC-----CCcEEEEEeCCCCceeEEEeccCC----ccccceEeeCCccccccccceeeecccce-ecC--C-CCCcc
Q 011368          386 ATGSY-----SNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHH  452 (487)
Q Consensus       386 ~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~-~~~~~  452 (487)
                      ++++.     +..|++||+.+++. ...+..+..    .+..++|+|  ++++     +++++.++. ++|  + .++ .
T Consensus       301 ~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~~~~~~-~  371 (741)
T 2ecf_A          301 SFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLD--DGSI-----LWSSERTGFQHLYRIDSKGK-A  371 (741)
T ss_dssp             EEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECT--TSCE-----EEEECTTSSCEEEEECSSSC-E
T ss_pred             EEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECC--CCeE-----EEEecCCCccEEEEEcCCCC-e
Confidence            97654     56899999998854 344444433    456888888  5667     888888887 888  3 233 5


Q ss_pred             ccccccCCCeEEE-EEcCCCCEEEE-ecCC---eEEEEe
Q 011368          453 ELSYNLSSKLLHL-AWHPTTNLIAC-ANGN---SLFFHY  486 (487)
Q Consensus       453 ~~~~~~~~~v~~~-~~spd~~~la~-~s~~---~~~i~~  486 (487)
                      ..+..+...|..+ +|+||++.|++ ++.+   .+.||.
T Consensus       372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          372 AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            5566777788887 59999998764 4444   466774

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=4.5e-21  Score=178.06  Aligned_cols=212  Identities=13%  Similarity=0.157  Sum_probs=138.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCC-CcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+.+++|  +|++++|++++.+ +.|.+|++.  +++......                                    
T Consensus        38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------------------   79 (343)
T 1ri6_A           38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------------------------------   79 (343)
T ss_dssp             SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeeccc------------------------------------
Confidence            67889999  6889988888876 999999997  554332210                                    


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                               +.. ...+..++|+|+++.++++  .++.|.+||+. .+.......    .+. ....+.+++|+|++ +.
T Consensus        80 ---------~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~----~~~-~~~~~~~~~~s~dg-~~  142 (343)
T 1ri6_A           80 ---------SAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD----VVE-GLDGCHSANISPDN-RT  142 (343)
T ss_dssp             ---------EEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE----EEC-CCTTBCCCEECTTS-SE
T ss_pred             ---------ccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccc----ccc-CCCCceEEEECCCC-CE
Confidence                     122 2378899999999988665  58999999995 222222110    112 22347889999999 87


Q ss_pred             EEEEe-CCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368          269 LAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD  344 (487)
Q Consensus       269 l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~  344 (487)
                      +++++ .++.|.+||+.+ ++........+..            .....+..++|+|+|+++++++  ++.|++|++...
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~  210 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP  210 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             EEEecCCCCEEEEEEecCCCceeeeccccccc------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            77777 899999999987 4321000001111            0124678899999999876553  499999999632


Q ss_pred             -Cce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEEeCC
Q 011368          345 -STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV  401 (487)
Q Consensus       345 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd~~~  401 (487)
                       +..  ...+.......         .....+..++|+|+|++|+ ++..++.|.+|++..
T Consensus       211 ~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          211 HGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             TSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence             221  11221111000         0011224799999999887 455789999999983

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.6e-22  Score=204.62  Aligned_cols=318  Identities=11%  Similarity=0.054  Sum_probs=200.5

Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      +++|+|+|++++++ .|+.|++||+.+++.                           ...+.+|..     .    ...|
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------~~~~~~~~~-----~----~~~~   62 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------YTILSNRTM-----K----SVNA   62 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------EEEECHHHH-----H----TTTC
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------EEEEccccc-----c----ccce
Confidence            78999999766655 699999999988764                           233333320     0    0138


Q ss_pred             eEEEEEecCCCcEEEEEeC---------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      .+++|  +|||++|++++.         ++.|++||+.+++....                                   
T Consensus        63 ~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-----------------------------------  105 (719)
T 1z68_A           63 SNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-----------------------------------  105 (719)
T ss_dssp             SEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------------------------
T ss_pred             eeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----------------------------------
Confidence            89999  689999998876         78999999998875210                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE-----------
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-----------  256 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-----------  256 (487)
                                   ......+..++|+|||+.|+++.++.|++|++.++. ...+.      ..++...|           
T Consensus       106 -------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~-~~~l~------~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A          106 -------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDP-PFQIT------FNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             -------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSC-CEECC------CCCBTTTEEESSCCHHHHH
T ss_pred             -------------eecCcccccceECCCCCEEEEEECCeEEEEeCCCCC-cEEEe------cCCCcCCeEcccccceeee
Confidence                         011245888999999999999988899999998443 33321      12222222           


Q ss_pred             ------EEEEEecCCCCEEEEEeCCC----------------------------------eEEEEEccCCccccccceee
Q 011368          257 ------TSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSALCDHSARIL  296 (487)
Q Consensus       257 ------~~v~~~p~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~  296 (487)
                            .+++|+|+| +.|++++.|.                                  .|++||+.+++... . ..+
T Consensus       166 e~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~-~-~~~  242 (719)
T 1z68_A          166 EMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG-P-QEV  242 (719)
T ss_dssp             HTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC-C-EEC
T ss_pred             ecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc-e-eEc
Confidence                  489999999 9999887652                                  78888888765210 0 000


Q ss_pred             cccccccCccccccccccceeEEEEcCCCCEEEEEeC-----CeEEEEe----CCCCCceeeee----eccccccccccc
Q 011368          297 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF----KIHEHLRPKLCD  363 (487)
Q Consensus       297 ~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-----~~i~iwd----~~~~~~~~~~~----~~~~~~~~~~~~  363 (487)
                      .       ....+.+|...+..++|+||++++++..+     ..|++||    +.+ ++....+    ..+...+..   
T Consensus       243 ~-------~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~---  311 (719)
T 1z68_A          243 P-------VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGG---  311 (719)
T ss_dssp             C-------CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSS---
T ss_pred             c-------CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEcc---
Confidence            0       00112345778999999999887776432     3588899    765 4444444    234332200   


Q ss_pred             ccCCCCcceeeEEEEcCCCCEEEE--EcCCC--cEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeec
Q 011368          364 LYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  439 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d~~~l~s--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~  439 (487)
                          ..   ...+.|+|||+.|+.  ...+|  .|++|++.+++  ...+..+...+..+.+.  ....+     ++++.
T Consensus       312 ----~~---~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~--d~~~i-----~~~~~  375 (719)
T 1z68_A          312 ----FF---VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV--TQDSL-----FYSSN  375 (719)
T ss_dssp             ----SS---CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE--CSSEE-----EEEES
T ss_pred             ----cc---CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE--eCCEE-----EEEEe
Confidence                00   015789999996654  44555  46666766553  44555555555565655  23333     44444


Q ss_pred             c----cce-ecCCC----CCc-ccccc----ccCCCeEEEEEcCCCCEEEEec
Q 011368          440 Y----RQA-HENSS----SGH-HELSY----NLSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       440 ~----~~~-~~w~~----~~~-~~~~~----~~~~~v~~~~~spd~~~la~~s  478 (487)
                      .    ++. ++|..    +.. ...+.    ++...+..++|+||+++++..+
T Consensus       376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~  428 (719)
T 1z68_A          376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC  428 (719)
T ss_dssp             CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred             cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence            4    355 88832    211 11111    2456788899999999887543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=5.4e-22  Score=203.52  Aligned_cols=290  Identities=11%  Similarity=0.064  Sum_probs=187.3

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.+++|  +|+|+++++ +.|++|++||+.+++.....                                        
T Consensus        17 ~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~----------------------------------------   53 (723)
T 1xfd_A           17 IHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLI----------------------------------------   53 (723)
T ss_dssp             CCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------
T ss_pred             ccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------
Confidence            45788899  688887765 78999999999998765441                                        


Q ss_pred             ceeeeecccCCC---ceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          194 MATKVYPHAHDF---NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       194 ~~~~~~~~~~~~---~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                             ..|..   .|.+++|+|||++|+++ .+         +.|++||+.++. ...+     ....+|...+..++
T Consensus        54 -------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l-----~~~~~~~~~~~~~~  120 (723)
T 1xfd_A           54 -------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-PQSL-----DPPEVSNAKLQYAG  120 (723)
T ss_dssp             -------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-CEEC-----CCTTCCSCCCSBCC
T ss_pred             -------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc-eEec-----cCCccccccccccE
Confidence                   33433   48999999999999998 53         788999998543 3221     12344555688999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccc---------cceeEEEEcCCCCEEEEE
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIKFANDGQHLLSR  331 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~---------~~v~~v~~s~~~~~l~s~  331 (487)
                      |+|+| +.|++++. +.|++||+.+++..    +....+...    ..+.++.         ..+..++|||||++|+++
T Consensus       121 ~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~~----~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          121 WGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKEG----VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             BCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBTT----TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCCC----ceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence            99999 99998886 79999999887643    222221000    0001111         134789999999999976


Q ss_pred             e-CC----------------------------------eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEE
Q 011368          332 D-YM----------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  376 (487)
Q Consensus       332 ~-d~----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (487)
                      + ++                                  .|++||+.+ ++....+..+.....         ....+..+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~---------~~~~~~~~  260 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRM---------REYYITMV  260 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGG---------SSEEEEEE
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCC---------ccceeEEE
Confidence            4 22                                  788888875 444444443311000         01123589


Q ss_pred             EEcCCCCEEEEEcC----CCcEEEEEeCCCCceeEEEeccCCccc----cceEeeCCccccccccceee--ecccc----
Q 011368          377 SVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVEAGKNENR----KPILQAAPRARRSSLSNLTR--GLYRQ----  442 (487)
Q Consensus       377 ~~s~d~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~l~~--g~~~~----  442 (487)
                      +|||||++|++.+.    +..|++||+.+++........+...+.    .+.|+|  +++.     |+.  +..++    
T Consensus       261 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~-----l~~~~~~~~~~~~~  333 (723)
T 1xfd_A          261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK--DGRK-----FFFIRAIPQGGRGK  333 (723)
T ss_dssp             EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT--TSCS-----EEEEEEECCSSSSC
T ss_pred             EEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC--CCCe-----EEEEEecccCCCcc
Confidence            99999999877643    357999999988543333233444443    778887  6664     443  44555    


Q ss_pred             e-ecC--C--CCCc---cccccccCCCeEE-EEEcCCCCEEEEec-C---CeEEEEe
Q 011368          443 A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACAN-G---NSLFFHY  486 (487)
Q Consensus       443 ~-~~w--~--~~~~---~~~~~~~~~~v~~-~~~spd~~~la~~s-~---~~~~i~~  486 (487)
                      . ++|  +  .+..   ...+......+.. ++|+|||+.|+..+ .   ..+.||.
T Consensus       334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence            3 444  4  2223   3333333445555 69999999998655 3   3466664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=3.3e-21  Score=174.85  Aligned_cols=234  Identities=12%  Similarity=0.135  Sum_probs=167.2

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeC-CcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...|...|.+++|+|+|++|++++ ++.|++||+.+ ++.                           .....+|.     
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------~~~~~~~~-----   83 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------EKVDTGFA-----   83 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------EECCCTTC-----
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------eEeccccc-----
Confidence            456788999999999999999986 78999999987 643                           23333442     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                            ...|.+++|  +|++++|++++  .++...||.++  ++....+                              
T Consensus        84 ------~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------  125 (297)
T 2ojh_A           84 ------TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM------------------------------  125 (297)
T ss_dssp             ------CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC------------------------------
T ss_pred             ------cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEEe------------------------------
Confidence                  156889999  68999999988  44567777664  3332211                              


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                        .. ...+..++|+|+++.|+ ++ .++.+.+|+++.......       .+..+...+.+++
T Consensus       126 ------------------~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~  179 (297)
T 2ojh_A          126 ------------------TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-------RLTHGEGRNDGPD  179 (297)
T ss_dssp             ------------------CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCSSSCEEEEE
T ss_pred             ------------------ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-------EcccCCCccccce
Confidence                              22 23488899999999887 56 899999999753333222       2455677899999


Q ss_pred             EecCCCCEEEEEe-CCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C----
Q 011368          261 FHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----  333 (487)
Q Consensus       261 ~~p~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d----  333 (487)
                      |+|++ +.|++++ .++.+++|++.. +...    ..+..             |...+..+.|+|+|++|++++ +    
T Consensus       180 ~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~~  241 (297)
T 2ojh_A          180 YSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ERITD-------------SAYGDWFPHPSPSGDKVVFVSYDADVF  241 (297)
T ss_dssp             ECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EECCC-------------CSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred             ECCCC-CEEEEEecCCCCccEEEECCCCCCc----EEEec-------------CCcccCCeEECCCCCEEEEEEcCCCCC
Confidence            99999 8777666 588999998863 2221    33333             356788999999999988763 2    


Q ss_pred             -------CeEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          334 -------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       334 -------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                             +.|++||+.+ ++.  +..+..|...+               ..++|+|++++|++++.+.
T Consensus       242 ~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          242 DHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEECC
T ss_pred             cccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEecc
Confidence                   4699999986 444  33333444432               4789999999999887663

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=9.1e-21  Score=176.43  Aligned_cols=266  Identities=10%  Similarity=0.114  Sum_probs=169.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEec---CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .+...+..++|+|+|+ |++++.   ++.|.+|++.+++.                         +.+..+..+.     
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~-----   85 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG-----   85 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES-----
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC-----
Confidence            3456678899999999 555543   68999999976642                         2334444444     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                             ..+..++|  +|+|++|++++ .++.|.+|++. ++............                         
T Consensus        86 -------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-------------------------  131 (347)
T 3hfq_A           86 -------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG-------------------------  131 (347)
T ss_dssp             -------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-------------------------
T ss_pred             -------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-------------------------
Confidence                   66889999  58899888887 78999999995 33332221100000                         


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                              ..+.   ...+...+.+++|+|+|+++++. .++.|.+|++...+........   . ......+..++|+|
T Consensus       132 --------~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~---~-~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          132 --------HGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL---T-MEAGFGPRHLVFSP  196 (347)
T ss_dssp             --------CCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE---E-CCTTCCEEEEEECT
T ss_pred             --------CCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE---E-cCCCCCCceEEECC
Confidence                    0000   01234568899999999966666 7899999999843433222100   0 11223578899999


Q ss_pred             CCCCEEEE-EeCCCeEEEEEccC--CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE-Ee-CCeEEE
Q 011368          264 IYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD-YMNLKL  338 (487)
Q Consensus       264 ~~~~~l~~-~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~-d~~i~i  338 (487)
                      +| +++++ ...++.|.+|++..  ++..  ....+......      + .....+..++|+|||++|++ .. ++.|.+
T Consensus       197 dg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          197 DG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD------Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             TS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT------C-CSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC------C-CCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence            99 75555 55688999999885  3321  11111110000      0 01145889999999998865 44 599999


Q ss_pred             EeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-CcEEEEEeC
Q 011368          339 WDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHG  400 (487)
Q Consensus       339 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~i~iwd~~  400 (487)
                      |++...+  ..+..+..+....               ..++|+|||++|++++.+ +.|.+|++.
T Consensus       267 ~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          267 FAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            9996322  2333343322211               489999999988887754 899999664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=8.5e-21  Score=175.39  Aligned_cols=253  Identities=10%  Similarity=0.095  Sum_probs=169.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEec-CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+ +++|+|+|++|++++. ++.|.+||..+++..                          ...+..+.         
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--------------------------~~~~~~~~---------   83 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--------------------------VVAIQEGQ---------   83 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--------------------------EEEEEECS---------
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--------------------------EEecccCC---------
Confidence            4456 9999999997776665 889999999877530                          23344444         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCC---cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                         .+..+++|  +|++++++++..++   .|.+||+.+++....                                   
T Consensus        84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~-----------------------------------  123 (331)
T 3u4y_A           84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST-----------------------------------  123 (331)
T ss_dssp             ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEE-----------------------------------
T ss_pred             ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEE-----------------------------------
Confidence               44555899  68899988555443   899999988875543                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCe-EEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                   ........+++|+|+|++++++  .++. |.+|++...+...... .   ........+.+++|+|+
T Consensus       124 -------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          124 -------------IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFISGGTRPFNITFTPD  186 (331)
T ss_dssp             -------------EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEECSSSSEEEEEECTT
T ss_pred             -------------EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccccCCCCccceEECCC
Confidence                         1223446899999999866654  5678 9999998554432211 0   01123445799999999


Q ss_pred             CCCEEEE-EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeC
Q 011368          265 YCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDI  341 (487)
Q Consensus       265 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~  341 (487)
                      | +++++ +..++.|.+||+.+++.. .....+..              ...+..++|+|+|++|+++.  ++.|.+||+
T Consensus       187 g-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          187 G-NFAFVANLIGNSIGILETQNPENI-TLLNAVGT--------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             S-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC--------------SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             C-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccC--------------CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            9 75554 456899999999987651 00133333              25678899999999877653  488999999


Q ss_pred             CCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCC
Q 011368          342 RMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  402 (487)
Q Consensus       342 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~  402 (487)
                      .+ ++.  +..+..+-..-        .........++|+|||++|++++ .++.|.+||+.+.
T Consensus       251 ~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          251 LS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             TT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            86 554  33322220000        00111113689999999886554 5679999999865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=4.8e-21  Score=195.87  Aligned_cols=280  Identities=9%  Similarity=0.065  Sum_probs=184.2

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..|.+++|||| ++++.+ .++.|++||+.+++.                            ..+..+.           
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~----------------------------~~l~~~~-----------  120 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV----------------------------TYLFDTN-----------  120 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence            56999999999 666655 459999999877643                            2334444           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----cceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                       ..+..++|  +|+|++|+++ .|+.|++|++.+     ++...+....... +            .             
T Consensus       121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-~------------~-------------  170 (706)
T 2z3z_A          121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET-L------------V-------------  170 (706)
T ss_dssp             -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT-E------------E-------------
T ss_pred             -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC-e------------E-------------
Confidence             66888999  6899999885 689999999988     6654431111000 0            0             


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------------------------------CeEEEEEcc
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------------------------------LRINLWNLE  233 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------------------------------~~i~iwd~~  233 (487)
                        +  ...  . ...+...+.+++|+|||+.|+++ .|                                 ..|++||+.
T Consensus       171 --~--g~~--~-~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          171 --Y--GQA--V-HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             --E--SSC--C-GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             --c--ccc--h-hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence              0  000  0 12334457899999999999987 32                                 579999998


Q ss_pred             CCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-----eEEEEEccCCccccccceeecccccccCcccc
Q 011368          234 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSF  308 (487)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  308 (487)
                      + +....+     .....|...+.+++|+|+| +.|++++.++     .|.+||+.+++...   .....+.        
T Consensus       244 ~-~~~~~~-----~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~~~--------  305 (706)
T 2z3z_A          244 T-GKTVYL-----QTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVETD--------  305 (706)
T ss_dssp             T-TEEEEC-----CCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEEEC--------
T ss_pred             C-CceEee-----ccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---EEEEccC--------
Confidence            4 333221     1112466789999999999 8898887765     89999999873221   1111100        


Q ss_pred             ccccccceeEEEEcC--CCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE-EEEcCCCCE
Q 011368          309 FTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE-CSVSGDGLH  384 (487)
Q Consensus       309 ~~~~~~~v~~v~~s~--~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~~  384 (487)
                       ......+..+.|+|  ||+++++++ ++.+++|++...+..+..+..+...+               .. ++|+|||+.
T Consensus       306 -~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v---------------~~~~~~spdg~~  369 (706)
T 2z3z_A          306 -KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV---------------TNFAGFDPKGTR  369 (706)
T ss_dssp             -SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE---------------EEEEEECTTSSE
T ss_pred             -CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE---------------EeeeEEcCCCCE
Confidence             00011246789999  999888875 48888888764366666666554322               34 799999998


Q ss_pred             EEEEcC-CC----cEEEEEeCCCCceeEEEeccCCccccceEeeCCcccc
Q 011368          385 FATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  429 (487)
Q Consensus       385 l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  429 (487)
                      |+.++. ++    .|+.||+.++.  ...+. +...+..++++|  +++.
T Consensus       370 l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~sp--dg~~  414 (706)
T 2z3z_A          370 LYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSP--DGSA  414 (706)
T ss_dssp             EEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECT--TSSE
T ss_pred             EEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECC--CCCE
Confidence            765554 44    56666766653  23333 566677888887  5655

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=5.2e-21  Score=190.97  Aligned_cols=263  Identities=8%  Similarity=-0.029  Sum_probs=186.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      .+|.+++|  ++||+.|++++. |++++||++.+++...+                                        
T Consensus        22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~l----------------------------------------   59 (582)
T 3o4h_A           22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------------------------   59 (582)
T ss_dssp             SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred             cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence            67999999  578999999886 99999999977665443                                        


Q ss_pred             cceeeeecccCC-CceeEEEeCCCCCEEEEe-c---CCeEEEEEccC--CCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          193 NMATKVYPHAHD-FNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       193 ~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                              ..+. ..+..++|+|| ++++++ .   +....+|.+..  .+....+        ... ..+...+|+|++
T Consensus        60 --------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------~~~-~~~~~~~~s~dg  121 (582)
T 3o4h_A           60 --------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--------EAV-KPMRILSGVDTG  121 (582)
T ss_dssp             --------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------TTS-CSBEEEEEEECS
T ss_pred             --------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------cCC-CCceeeeeCCCC
Confidence                    3444 68999999999 777766 4   45566766553  3332221        111 123456888887


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC----CeEEEEe
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY----MNLKLWD  340 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d----~~i~iwd  340 (487)
                      ...+++.+.++.+.+||+.+++..    +....              ..  .+++|||||++|+++ .+    +.|++||
T Consensus       122 ~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d  181 (582)
T 3o4h_A          122 EAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN  181 (582)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence            444455555555669999987642    22222              12  789999999999965 33    6799999


Q ss_pred             CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC--cEEEEEeCCCCceeEEEeccCCcccc
Q 011368          341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEAGKNENRK  418 (487)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~  418 (487)
                      +.+ ++. ..+..+...+               ..++|||||++|+++..++  .|++||+.+++..  .+..|...+..
T Consensus       182 ~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~  242 (582)
T 3o4h_A          182 LSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSS  242 (582)
T ss_dssp             TTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHH
T ss_pred             CCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhh
Confidence            875 443 3555555432               5899999999999888888  8999999987554  77788888888


Q ss_pred             ce--------EeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe----EEEE
Q 011368          419 PI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS----LFFH  485 (487)
Q Consensus       419 ~~--------~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~----~~i~  485 (487)
                      +.        ++|  ++++     ++++..++. ++|..+ ....  .....|.+++|+ |++++++++.+.    +++|
T Consensus       243 ~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~g-~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~  311 (582)
T 3o4h_A          243 YRPTAITWLGYLP--DGRL-----AVVARREGRSAVFIDG-ERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL  311 (582)
T ss_dssp             HCCSEEEEEEECT--TSCE-----EEEEEETTEEEEEETT-EEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             hhhccccceeEcC--CCcE-----EEEEEcCCcEEEEEEC-Ceec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence            88        888  5576     888989988 999762 2221  344678899999 999988776432    5555


Q ss_pred             e
Q 011368          486 Y  486 (487)
Q Consensus       486 ~  486 (487)
                      +
T Consensus       312 d  312 (582)
T 3o4h_A          312 P  312 (582)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.1e-19  Score=167.15  Aligned_cols=216  Identities=12%  Similarity=0.082  Sum_probs=137.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeC---CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+..++|  +|+|+ |++++.   ++.|.+|++.+++...+..                                    
T Consensus        40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~------------------------------------   80 (347)
T 3hfq_A           40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT------------------------------------   80 (347)
T ss_dssp             SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE------------------------------------
T ss_pred             CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeee------------------------------------
Confidence            55778999  67888 555443   6899999998776433210                                    


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCC----CCCCCCcEEEEEEecC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPI  264 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~  264 (487)
                               +..+...+..++|+|+|++|+++  .++.|.+|++...+....+.......    .......+.+++|+|+
T Consensus        81 ---------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           81 ---------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             ---------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred             ---------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence                     13456678899999999988776  68999999997444332221110000    0012345889999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeC
Q 011368          265 YCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDI  341 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~  341 (487)
                      | +++++...++.|.+||+. +++...  ...+..+            ....+..++|+|||++|++++  ++.|++|++
T Consensus       152 g-~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~------------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  216 (347)
T 3hfq_A          152 N-RLAVIDLGSDKVYVYNVSDAGQLSE--QSVLTME------------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKY  216 (347)
T ss_dssp             S-CEEEEETTTTEEEEEEECTTSCEEE--EEEEECC------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             C-cEEEEeCCCCEEEEEEECCCCcEEE--eeeEEcC------------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            9 766666678999999998 443210  0111110            023567899999999777653  489999998


Q ss_pred             CCC-Cce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-EEcCCCcEEEEEeCC
Q 011368          342 RMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV  401 (487)
Q Consensus       342 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~dg~i~iwd~~~  401 (487)
                      ... +..  +..+.......         .....+..++|+|||++|+ +...++.|.+|++..
T Consensus       217 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          217 DTQTGAFTQLGIVKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             ETTTTEEEEEEEEESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             cCCCCceEEeeeeeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            742 222  12222111100         0001235899999999874 555689999999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=7e-21  Score=190.02  Aligned_cols=271  Identities=14%  Similarity=0.061  Sum_probs=179.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEec-CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ..+|++++|+|||++||+++. ||+++||++++++.                            ..+..|.         
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~---------   63 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREP---------   63 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSC---------
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeeccc---------
Confidence            457999999999999999886 99999999976643                            2233332         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeC---CCcEEEEEccc--c-ceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--Q-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~---d~~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                        ...+..++|  +|| ++++++..   +...++|.+..  . ....+                                
T Consensus        64 --~~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------------------------------  106 (582)
T 3o4h_A           64 --INSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--------------------------------  106 (582)
T ss_dssp             --CSEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------------------------------
T ss_pred             --ccccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------------------------------
Confidence              146899999  566 67776664   55667776654  2 11111                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCE--EEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~--l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                      .. ...+...+|+|+++.  ++++.++.+.+||+.+ +....+.        .+..  .+++|+
T Consensus       107 ----------------~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~~l~--------~~~~--~~~~~s  158 (582)
T 3o4h_A          107 ----------------EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLRELA--------RLPG--FGFVSD  158 (582)
T ss_dssp             ----------------TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEEEEE--------EESS--CEEEEE
T ss_pred             ----------------cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEEEee--------cCCC--ceEEEC
Confidence                            11 112335577777753  4445555556999984 4443332        1222  789999


Q ss_pred             cCCCCEEEEEeCC----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC--e
Q 011368          263 PIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM--N  335 (487)
Q Consensus       263 p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~--~  335 (487)
                      |+| +.|++++.+    +.|.+||+.+++.     +.+..             |...+..++|||||++|++++ ++  .
T Consensus       159 pDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~-------------~~~~~~~~~~SpDG~~l~~~~~~~~~~  219 (582)
T 3o4h_A          159 IRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDS-------------GEGSFSSASISPGMKVTAGLETAREAR  219 (582)
T ss_dssp             EET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECC-------------SSCEEEEEEECTTSCEEEEEECSSCEE
T ss_pred             CCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeec-------------CCCccccceECCCCCEEEEccCCCeeE
Confidence            999 999988876    7899999988763     33333             356789999999999999765 46  8


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      |++||+.+ +... .+..+...+....       ..+....+|+|||.++++++.|+.++||++  ++. ..   .....
T Consensus       220 i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~-~~---~~~~~  284 (582)
T 3o4h_A          220 LVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFID--GER-VE---APQGN  284 (582)
T ss_dssp             EEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE-EC---CCSSE
T ss_pred             EEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe-ec---cCCCc
Confidence            99999986 5555 5555544321000       000123449999999999999999999999  422 21   33455


Q ss_pred             cccceEeeCCccccccccceeeecccce--ecC
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGLYRQA--HEN  446 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~w  446 (487)
                      +..++++   ++++     +++++.+..  .+|
T Consensus       285 v~~~~~s---dg~~-----l~~~s~~~~p~~l~  309 (582)
T 3o4h_A          285 HGRVVLW---RGKL-----VTSHTSLSTPPRIV  309 (582)
T ss_dssp             EEEEEEE---TTEE-----EEEEEETTEEEEEE
T ss_pred             eEEEEec---CCEE-----EEEEcCCCCCCeEE
Confidence            6677776   5555     666665544  555

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.1e-20  Score=173.05  Aligned_cols=265  Identities=12%  Similarity=0.022  Sum_probs=182.7

Q ss_pred             cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC-c
Q 011368          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF-N  206 (487)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  206 (487)
                      +++++++.++.|.+||+.+++......                                              .++.. .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------------~~~~~~~   35 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVIT----------------------------------------------IADAGPT   35 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------CTTCTTC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEE----------------------------------------------cCCCCCC
Confidence            478899999999999999887554311                                              12222 4


Q ss_pred             eeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-----------
Q 011368          207 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----------  273 (487)
Q Consensus       207 v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----------  273 (487)
                      +..++|+|+++.+++ + .++.|.+||+.+.. ....+....  ...+...+.+++|+|+| +.+++++           
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEcCC--cccccccccceEECCCC-CEEEEEeccccccccccc
Confidence            788999999987655 5 78999999998544 443332110  00012246689999999 8888886           


Q ss_pred             -CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee
Q 011368          274 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       274 -~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~  352 (487)
                       .++.|.+||+.+++..    ..+..              ...+..++|+|+|++|+++ ++.|++||+.+ ++.+..+.
T Consensus       112 ~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~  171 (337)
T 1pby_B          112 VQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKP  171 (337)
T ss_dssp             ECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEEC
T ss_pred             ccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeee
Confidence             5799999999887643    33333              2457889999999988887 68999999986 66666665


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC------------------------cEEEEEeCCCCceeEE
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN------------------------LLRIFSHGVGSAGGIT  408 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg------------------------~i~iwd~~~~~~~~~~  408 (487)
                      .+....                .+.|+||+++|+..+.++                        .|.+||+.+++.....
T Consensus       172 ~~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          172 IQSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             STTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             ccccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence            443211                346788888766544332                        4689999988665555


Q ss_pred             EeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCc-cccccccCCCeEEEEEcCCCCEEEEec-CCeEEEE
Q 011368          409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  485 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~-~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~  485 (487)
                      +..+......++++|  +++.     ++++  ++. .+|+.... ..........+.+++|+|||++|++++ ++.+++|
T Consensus       236 ~~~~~~~~~~~~~s~--dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          236 VRIMDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EEECSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             cCCCCCceeeEEECC--CCCE-----EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence            666666677788887  6665     5665  455 88854322 222333445678999999999888776 4568888


Q ss_pred             eC
Q 011368          486 YA  487 (487)
Q Consensus       486 ~~  487 (487)
                      .+
T Consensus       307 d~  308 (337)
T 1pby_B          307 DA  308 (337)
T ss_dssp             ET
T ss_pred             EC
Confidence            63

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=1.4e-19  Score=185.41  Aligned_cols=323  Identities=10%  Similarity=0.049  Sum_probs=196.7

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      ...+++|+|||++|+++  |+.|++||+.+++.                           ...+.+|...     .  +.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------~~~~~~~~~~-----~--~~   61 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------SVFLENSTFD-----E--FG   61 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------EEEECTTTTT-----T--CC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------EEEEechhhh-----h--hc
Confidence            35689999999999986  89999999988864                           2445666510     0  00


Q ss_pred             cceeEEEEEecCCCcEEEEEeCC---------CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                      .....++|  +|||++|+.++.+         +.+.+||+.+++...+                                
T Consensus        62 ~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l--------------------------------  107 (740)
T 4a5s_A           62 HSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE--------------------------------  107 (740)
T ss_dssp             SCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--------------------------------
T ss_pred             ccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc--------------------------------
Confidence            22345788  6899999998876         5567999998875432                                


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE--------
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI--------  256 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--------  256 (487)
                                      ..+...+...+|||||+.||.+.++.|++|++.++ ...++      +..++...+        
T Consensus       108 ----------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~-~~~~l------t~~g~~~~~~~g~~~~v  164 (740)
T 4a5s_A          108 ----------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL-PSYRI------TWTGKEDIIYNGITDWV  164 (740)
T ss_dssp             ----------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS-CCEEC------CSCCBTTTEEESBCCHH
T ss_pred             ----------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCC-ceEEE------cCCCCccceecCccccc
Confidence                            56677899999999999999998899999999844 33332      122332222        


Q ss_pred             ---------EEEEEecCCCCEEEEEeCCC------------------------------------eEEEEEccC---Ccc
Q 011368          257 ---------TSAEFHPIYCNLLAYSSSRG------------------------------------FVRLVDMRQ---SAL  288 (487)
Q Consensus       257 ---------~~v~~~p~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~~  288 (487)
                               ..+.|+|+| +.||.++.|.                                    .|.+||+.+   ++.
T Consensus       165 ~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          165 YEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             ccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                     348999999 8888876432                                    344555554   310


Q ss_pred             ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----C-CeEEEEeCCCCCc----e--eeee--eccc
Q 011368          289 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST----P--VATF--KIHE  355 (487)
Q Consensus       289 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d-~~i~iwd~~~~~~----~--~~~~--~~~~  355 (487)
                      ..  ...+..       ...+.+|...+..++|+|||+.++...    + ..|++||+.+ ++    +  +..+  ..+.
T Consensus       244 ~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~  313 (740)
T 4a5s_A          244 AT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTT  313 (740)
T ss_dssp             CC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSS
T ss_pred             ce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCC
Confidence            00  011110       000113567899999999999776542    1 4799999987 44    1  1222  2333


Q ss_pred             ccccccccccCCCCcceeeEEEEcCCCCEEE-EEcC-C--CcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccc
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  431 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-sg~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  431 (487)
                      ..+..          .....+.|+|||+.|+ ..+. +  ..|++|++.++..  ..+....-.+..+. .+. ...+  
T Consensus       314 ~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~v~~~~-~~d-~~~i--  377 (740)
T 4a5s_A          314 GWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWEVIGIE-ALT-SDYL--  377 (740)
T ss_dssp             SCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSCEEEEE-EEC-SSEE--
T ss_pred             ceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEEEEEEE-EEe-CCEE--
Confidence            32210          0012678999999877 6653 3  3578888876533  23333333333332 232 2333  


Q ss_pred             ccceeeecc----cce-ecCCC--CCc-cc-ccc----ccCCCeEEEEEcCCCCEEEEecC
Q 011368          432 LSNLTRGLY----RQA-HENSS--SGH-HE-LSY----NLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       432 ~~~l~~g~~----~~~-~~w~~--~~~-~~-~~~----~~~~~v~~~~~spd~~~la~~s~  479 (487)
                         +.++..    .+. ++|..  ... .. .+.    .....+..+.|+||+++++....
T Consensus       378 ---~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s  435 (740)
T 4a5s_A          378 ---YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS  435 (740)
T ss_dssp             ---EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred             ---EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence               344433    233 66622  111 11 111    12356789999999998875553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=6.4e-20  Score=170.70  Aligned_cols=258  Identities=9%  Similarity=0.058  Sum_probs=173.4

Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      .++++++++++++++.++.|.+||..+++.                           ...+..+.           ...+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~-----------~~~~   45 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPD-----------KFGP   45 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSS-----------CCSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCC-----------CCCC
Confidence            457888999999999999999999887653                           23333221           0246


Q ss_pred             eEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      ..++|  ++++++++ +...++.|.+||+.+++..........+                                    
T Consensus        46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------   87 (349)
T 1jmx_B           46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------   87 (349)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred             ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence            78999  67887655 5557899999999887755432100000                                    


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEEe-cC------------CeEEEEEccCCCc--eeEEeecCCCCCCCCCCcEEEEE
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d------------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                           ......+.+++|+|+|++++++ .+            +.|.+||+.++..  ....        ..+...+.+++
T Consensus        88 -----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~  154 (349)
T 1jmx_B           88 -----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--------FPMPRQVYLMR  154 (349)
T ss_dssp             -----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------EECCSSCCCEE
T ss_pred             -----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------ccCCCccccee
Confidence                 0002347889999999999998 55            9999999985321  1111        12233578899


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc-ccC--------------c--------------------
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHG--------------S--------------------  305 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~--------------~--------------------  305 (487)
                      |+|+| + +++++.  .|.+||+.+++..    ..+..+.. .+.              .                    
T Consensus       155 ~s~dg-~-l~~~~~--~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  226 (349)
T 1jmx_B          155 AADDG-S-LYVAGP--DIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  226 (349)
T ss_dssp             ECTTS-C-EEEESS--SEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             ECCCC-c-EEEccC--cEEEEeCCCCcee----ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence            99999 7 555543  4999999887644    22222100 000              0                    


Q ss_pred             --------------------cccccccccceeEEEEcC-CCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368          306 --------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  364 (487)
Q Consensus       306 --------------------~~~~~~~~~~v~~v~~s~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  364 (487)
                                          ...+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+......       
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~-------  297 (349)
T 1jmx_B          227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTY-------  297 (349)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSCC-------
T ss_pred             cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCCc-------
Confidence                                000001123567888999 99999988 79999999987 7776666543332       


Q ss_pred             cCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          365 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                               ..++|+|+|++|++++.++.|++||+++++. ...++
T Consensus       298 ---------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~-~~~~~  333 (349)
T 1jmx_B          298 ---------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK-VKNIK  333 (349)
T ss_dssp             ---------CEEEECSSSSCEEEESBSSEEEEEETTTTEE-EEEEE
T ss_pred             ---------cceEECCCCCEEEEecCCCeEEEEeccccce-eeeee
Confidence                     4899999999999898899999999988743 44443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=3.6e-19  Score=169.96  Aligned_cols=229  Identities=9%  Similarity=0.085  Sum_probs=147.8

Q ss_pred             ccccCcEEEEEEcCCCCEEE----EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~----~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      +.|...|++++|+|+|++||    +|+.|+.|+|||+.+....                .............+.+|.   
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~h~---  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE----------------AKQQKRPFAYHKLLKDAG---  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT----------------TCSSCCCSEEEECCCSGG---
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccC----------------CcCCcceeeeeeccCCCC---
Confidence            45667899999999999999    7889999999998754110                000000122345677788   


Q ss_pred             ccccccccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                               ..|.+++|+  |+ +.+|++++.|++|++||+.++.....                               
T Consensus       150 ---------~~V~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~~~~~~-------------------------------  187 (434)
T 2oit_A          150 ---------GMVIDMKWN--PTVPSMVAVCLADGSIAVLQVTETVKVCA-------------------------------  187 (434)
T ss_dssp             ---------GSEEEEEEC--SSCTTEEEEEETTSCEEEEEESSSEEEEE-------------------------------
T ss_pred             ---------CceEEEEEC--CCCCCEEEEEECCCeEEEEEcCCCcceee-------------------------------
Confidence                     889999995  54 78999999999999999988743221                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                      ..+|...|++++|+|+|++|++| .|+.|++||++ +. ....+......-..|...|.++.|+
T Consensus       188 ----------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          188 ----------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             ----------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             ----------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEe
Confidence                            14688899999999999999999 99999999998 33 2332211111111344589999999


Q ss_pred             cCCCCEEEEE-eCCC------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--
Q 011368          263 PIYCNLLAYS-SSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--  333 (487)
Q Consensus       263 p~~~~~l~~~-~~dg------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--  333 (487)
                      +++ .++++. ..+|      .+++|+++......  ...+..+.....   .+.+....-..+.+-++.+++++++.  
T Consensus       250 ~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~~---~~~~~r~~~~~~~~l~dw~l~~v~s~~s  323 (434)
T 2oit_A          250 GTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPCY---GSCTERQHHYYLSYIEEWDLVLAASAAS  323 (434)
T ss_dssp             ETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSSC---CCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred             cCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCCC---CCCCCcCcceeeehhccCCEEEEecCCC
Confidence            987 665443 3443      38999998653110  022222111100   00111222233444477777776642  


Q ss_pred             CeEEEEeCC
Q 011368          334 MNLKLWDIR  342 (487)
Q Consensus       334 ~~i~iwd~~  342 (487)
                      +.|.+....
T Consensus       324 ~dv~vl~~~  332 (434)
T 2oit_A          324 TEVSILARQ  332 (434)
T ss_dssp             SBCEEEEEC
T ss_pred             CceeEEEec
Confidence            566666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.4e-18  Score=162.62  Aligned_cols=267  Identities=12%  Similarity=0.080  Sum_probs=166.9

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecC----CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      +...+..++|+|+|++|++++.+    +.|.+|+++...-                       ..+.+.....+.     
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~-----   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG-----   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence            55677889999999999998875    7999999876311                       122333344343     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeE-eeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                             .....+++    ++++|++++ .++.|.+|++....... ........                         
T Consensus       100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------------------------  143 (361)
T 3scy_A          100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK-------------------------  143 (361)
T ss_dssp             -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC-------------------------
T ss_pred             -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc-------------------------
Confidence                   44566665    567777665 68899999997543221 10000000                         


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCc----e-eEEe-ecCCCCCCCCCCcE
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----C-FNIV-DMKPSNMDDLTEVI  256 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~----~-~~~~-~~~~~~~~~~~~~v  256 (487)
                              ... ......+...+.+++|+|+|++++++  .++.|.+|++.....    . +... ... .........+
T Consensus       144 --------g~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~  213 (361)
T 3scy_A          144 --------GSG-PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE-AFKVAPGSGP  213 (361)
T ss_dssp             --------CCC-SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE-EEECCTTCCE
T ss_pred             --------CCC-CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc-ceecCCCCCC
Confidence                    000 00012334557899999999976665  689999999885442    1 1100 000 0011234557


Q ss_pred             EEEEEecCCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e--
Q 011368          257 TSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D--  332 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~--  332 (487)
                      ..++|+|+| +++++++ .++.|.+||+.++....  ...+..          ...+......++|+|||++|+++ .  
T Consensus       214 ~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          214 RHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             eEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEECCCCCEEEEECCCC
Confidence            899999999 8777777 68999999998764310  111111          11123456899999999988765 3  


Q ss_pred             CCeEEEEeCCCC-Cc--eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368          333 YMNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG  400 (487)
Q Consensus       333 d~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~  400 (487)
                      ++.|.+|++... +.  .+..+.....+                ..++|+|||++|++++ .++.|.+|++.
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~g~~~----------------~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLTGIHP----------------RNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEECSSCC----------------CEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecCCCCC----------------ceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            379999999621 33  23333321111                4899999999988887 67899997665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=3.9e-19  Score=164.44  Aligned_cols=250  Identities=12%  Similarity=0.070  Sum_probs=171.2

Q ss_pred             CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec-CCCccccccccccccc-ceeEEEEE
Q 011368           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC  122 (487)
Q Consensus        45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~I~~v~~~  122 (487)
                      ++|++++.++.|.+||..+++.                           ...+. ++.            . .+..++| 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~-   41 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMV-   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEE-
T ss_pred             cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEE-
Confidence            4789999999999999877653                           23333 221            1 4788999 


Q ss_pred             ecCCCcEE-EEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecc
Q 011368          123 AAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPH  201 (487)
Q Consensus       123 ~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (487)
                       +|+++++ +++..++.|.+||+.+++.........                                          ..
T Consensus        42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------------------~~   78 (337)
T 1pby_B           42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------------------------------------PE   78 (337)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------------------------------------TT
T ss_pred             -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC------------------------------------------cc
Confidence             6788765 455678899999998887554321000                                          00


Q ss_pred             cCCCceeEEEeCCCCCEEEEe-------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          202 AHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                      .+...+.+++|+|+++.++++             .++.|.+||+.+ +.....+       . ....+.+++|+|++ ++
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~-------~-~~~~~~~~~~s~dg-~~  148 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAF-------E-APRQITMLAWARDG-SK  148 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEE-------E-CCSSCCCEEECTTS-SC
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEE-------e-CCCCcceeEECCCC-CE
Confidence            122357789999999988887             369999999984 4444332       1 12346788999999 87


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccc-cc-----cCcc------------------------------------
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ES-----HGSK------------------------------------  306 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~-----~~~~------------------------------------  306 (487)
                      |+++  ++.|.+||+.+++..    ..+..+. ..     +...                                    
T Consensus       149 l~~~--~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLV----EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEE----EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             EEEe--CCeEEEEECCCCcEe----eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            7777  688999999987643    2222111 00     0000                                    


Q ss_pred             -----------ccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeE
Q 011368          307 -----------SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  375 (487)
Q Consensus       307 -----------~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (487)
                                 ..+..+...+..++|+|+|++++++ ++.|++||+.+ ++.+..+......                .+
T Consensus       223 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~  284 (337)
T 1pby_B          223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YS  284 (337)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CE
T ss_pred             EEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------ee
Confidence                       0011233456679999999999988 69999999986 7776666544332                48


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          376 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       376 ~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      ++|+|||++|++++.++.|++||+.+++. ...+..+
T Consensus       285 ~~~s~dg~~l~~~~~~~~i~v~d~~~~~~-~~~~~~~  320 (337)
T 1pby_B          285 VNVSTDGSTVWLGGALGDLAAYDAETLEK-KGQVDLP  320 (337)
T ss_dssp             EEECTTSCEEEEESBSSEEEEEETTTCCE-EEEEECG
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECcCCcE-EEEEEcC
Confidence            99999999999999999999999998843 4445444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.8e-18  Score=161.81  Aligned_cols=212  Identities=8%  Similarity=0.083  Sum_probs=135.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCC----CcEEEEEccc--cceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      ..+..++|  +|++++|++++.+    +.|.+|++..  ++...+..                                 
T Consensus        50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~---------------------------------   94 (361)
T 3scy_A           50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNT---------------------------------   94 (361)
T ss_dssp             SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeE---------------------------------
Confidence            56788999  6899999998875    7999999876  44332210                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeE---EeecC---CCCCCCCCCcEEEE
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN---IVDMK---PSNMDDLTEVITSA  259 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~---~~~~~---~~~~~~~~~~v~~v  259 (487)
                                  ...+......+++  ++++|+++  .++.|.+|++...+....   .....   +.....+...+.++
T Consensus        95 ------------~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (361)
T 3scy_A           95 ------------QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV  160 (361)
T ss_dssp             ------------EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred             ------------eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence                        1234455677777  77877766  789999999975443211   11000   00111233457889


Q ss_pred             EEecCCCCEEEEEe-CCCeEEEEEccCCcc------cccc--ceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          260 EFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       260 ~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~------~~~~--~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      +|+|+| +++++++ .++.|.+|++.....      +...  ......            .+......++|+|||+++++
T Consensus       161 ~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          161 RITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             EECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEE
T ss_pred             EECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCCCCEEEE
Confidence            999999 7665555 588999999876431      1000  001111            11345788999999998877


Q ss_pred             Ee--CCeEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC--CCcEEEEEeC
Q 011368          331 RD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHG  400 (487)
Q Consensus       331 ~~--d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~--dg~i~iwd~~  400 (487)
                      +.  ++.|.+||+.+ +..  +..+......            ......++|+|||++|+++..  ++.|.+|++.
T Consensus       228 ~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          228 INEIGGTVIAFRYAD-GMLDEIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EETTTCEEEEEEEET-TEEEEEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EcCCCCeEEEEEecC-CceEEeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            65  49999999975 433  2222211110            001248999999999876665  4899999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=4.3e-19  Score=169.43  Aligned_cols=229  Identities=10%  Similarity=0.005  Sum_probs=152.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...++.+++++++.++++++.++ ++||+.......       ...          ...........       ....+.
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~-------~~~----------~~~~~~~~~~~-------~~~~~~   90 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ-------NKP----------GDDPNKIVDKV-------QGLLVP   90 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC-------CCT----------TCCTTCEEECC-------CCEEEC
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh-------ccc----------ccCcccccccC-------cccccc
Confidence            44689999999999999999887 999886432110       000          00000000000       001112


Q ss_pred             cccceeEEEEEecCCCcEEE----EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      +...|.+++|  ++++++|+    +++.|+.|++||+.++.......  ..+                            
T Consensus        91 ~~~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~--~~~----------------------------  138 (434)
T 2oit_A           91 MKFPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ--KRP----------------------------  138 (434)
T ss_dssp             CSSCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS--CCC----------------------------
T ss_pred             CCCcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcCC--cce----------------------------
Confidence            2377999999  67899999    78899999999998651000000  000                            


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                           ....+ .+.+|...|.+++|+|+ +++|+++ .|++|++||+++......        ..+|...|.+++|+|+|
T Consensus       139 -----~~~~~-~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~--------~~~~~~~v~~v~wspdg  204 (434)
T 2oit_A          139 -----FAYHK-LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA--------TLPSTVAVTSVCWSPKG  204 (434)
T ss_dssp             -----SEEEE-CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE--------EECGGGCEEEEEECTTS
T ss_pred             -----eeeee-ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee--------ccCCCCceeEEEEcCCC
Confidence                 00011 13679999999999997 8899999 999999999995532221        24578899999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C------CeEE
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y------MNLK  337 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d------~~i~  337 (487)
                       ++|++|+.||.|++||++ ++..    ..+..|..      ...+|...|.++.|++++.++++.+  +      ..++
T Consensus       205 -~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          205 -KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             -SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             -CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence             999999999999999998 3322    33333210      0112345899999999998887532  2      2499


Q ss_pred             EEeCCC
Q 011368          338 LWDIRM  343 (487)
Q Consensus       338 iwd~~~  343 (487)
                      +|+++.
T Consensus       273 i~~l~~  278 (434)
T 2oit_A          273 MALLPK  278 (434)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999975

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=3.9e-19  Score=168.10  Aligned_cols=239  Identities=14%  Similarity=0.140  Sum_probs=153.9

Q ss_pred             EEEcCCCCEEEEEec-CCc--EEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           38 IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        38 ~~~s~~~~~l~~g~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      .+|||||++|+.++. +|.  |.+||+.+++.                           .....++.            .
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~------------~   81 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG------------D   81 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC------------B
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC------------C
Confidence            789999999998886 674  77778766643                           23334444            4


Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .+..++|  +|+++.|+.++.++.|++||+.+++...+.                                         
T Consensus        82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-----------------------------------------  118 (388)
T 3pe7_A           82 NTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVY-----------------------------------------  118 (388)
T ss_dssp             CSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------------------------
T ss_pred             CccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeee-----------------------------------------
Confidence            4456778  689999999999999999999988755432                                         


Q ss_pred             eeeeecccCCCceeEE--EeCCCCCEEEEe-----------------------cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368          195 ATKVYPHAHDFNINSI--SNNSDCETFVSA-----------------------DDLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i--~~s~~~~~l~s~-----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                            ..+...+...  .++|+++.++..                       .+..|.+||+.++ ....+        
T Consensus       119 ------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l--------  183 (388)
T 3pe7_A          119 ------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-ESTVI--------  183 (388)
T ss_dssp             ------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-CEEEE--------
T ss_pred             ------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-ceEEe--------
Confidence                  2223333333  348888888742                       3468999999854 33332        


Q ss_pred             CCCCCcEEEEEEec-CCCCEEEEEeCC------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          250 DDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       250 ~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                      ..+...+..++|+| +| +.|+....+      ..|.++|...+..     +.+..+.           ....+..+.|+
T Consensus       184 ~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~-----------~~~~~~~~~~s  246 (388)
T 3pe7_A          184 LQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA-----------EGESCTHEFWV  246 (388)
T ss_dssp             EEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC-----------TTEEEEEEEEC
T ss_pred             ecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC-----------CCcccccceEC
Confidence            23456689999999 98 888877753      3677777765532     2222210           01257788999


Q ss_pred             CCCCEEEEEe--C-C---eEEEEeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE------
Q 011368          323 NDGQHLLSRD--Y-M---NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG------  388 (487)
Q Consensus       323 ~~~~~l~s~~--d-~---~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg------  388 (487)
                      |||+.|+..+  + +   .|++||+.+ ++.  +..+..+.....            ......|+|||+.|+..      
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~------------~~~~~~~spdg~~l~~~~~~~~~  313 (388)
T 3pe7_A          247 PDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS------------NYDGSLMVGDGSDAPVDVQDDSG  313 (388)
T ss_dssp             TTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE------------CTTSSEEEEEECCC---------
T ss_pred             CCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee------------cCCCCeEccCCCcceeEeeeccc
Confidence            9999876532  2 2   399999986 443  222222111000            00134799999988854      


Q ss_pred             ---cCCCcEEEEEeCCCC
Q 011368          389 ---SYSNLLRIFSHGVGS  403 (487)
Q Consensus       389 ---~~dg~i~iwd~~~~~  403 (487)
                         ..+..|++||+.+++
T Consensus       314 ~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          314 YKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             ---CCCCEEEEEETTTTE
T ss_pred             cccCCCCEEEEEeccCCc
Confidence               456789999998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=2.6e-18  Score=160.06  Aligned_cols=240  Identities=11%  Similarity=0.061  Sum_probs=167.6

Q ss_pred             cCcEEEEEEcCCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc-cccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-FDYLKS  109 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~  109 (487)
                      ...+..++|+|+|++++.+ ..++.|.+||..+++.                           ...+..+... .+... 
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~~~~~~~~-  139 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV---------------------------KGRLVLDDRKRTEEVR-  139 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE---------------------------EEEEESCCCCCCSSCC-
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee---------------------------EEEEecCCCccccccC-
Confidence            4457789999999966554 5679999999887754                           2333332200 00000 


Q ss_pred             cccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                         ...+.+++|  +++++++++++  .++.|.+||..+++.....                                  
T Consensus       140 ---~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------  180 (353)
T 3vgz_A          140 ---PLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAI----------------------------------  180 (353)
T ss_dssp             ---CCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEE----------------------------------
T ss_pred             ---CCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEe----------------------------------
Confidence               012688999  57888777765  5788999999988755431                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                   ..+...+.+++|+|+++.++++ .++.|.+||..+. .....+..   ...++...+.+++|+|++ 
T Consensus       181 -------------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~---~~~~~~~~~~~~~~s~dg-  242 (353)
T 3vgz_A          181 -------------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN-KILSRKKL---LDDGKEHFFINISLDTAR-  242 (353)
T ss_dssp             -------------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-EEEEEEEC---CCSSSCCCEEEEEEETTT-
T ss_pred             -------------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-eEEEEEEc---CCCCCCcccceEEECCCC-
Confidence                         2244557889999999999998 9999999999844 44433321   112345568899999999 


Q ss_pred             CEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCC
Q 011368          267 NLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRM  343 (487)
Q Consensus       267 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~  343 (487)
                      +.+++++. ++.|.+||+.+++..    ..+..               .....++|+|+|++++++.  ++.|.+||..+
T Consensus       243 ~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          243 QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            76666654 599999999887654    33333               1125689999999766553  59999999987


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                       ++.+..+.....+                ..++|+|||++|+++..++
T Consensus       304 -~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          304 -YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             -TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred             -CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence             7777777655432                5899999999887776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=3.2e-18  Score=160.24  Aligned_cols=257  Identities=11%  Similarity=0.013  Sum_probs=164.9

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEee-CCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++..                         .......+           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~-----------   82 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG-----------   82 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence            357889999999999999887 99999987 55421                         01111111           


Q ss_pred             cccceeEEEEEecCCCcE--EEEEe-------------CCCcEEEEEccc-cceeEeeecCCCCceeeeecccccccccc
Q 011368          112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~--l~s~~-------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                        +.+..++|  +|+|++  ++++.             .++.+.+|++.. ++.....                      
T Consensus        83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~----------------------  136 (365)
T 1jof_A           83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV----------------------  136 (365)
T ss_dssp             --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE----------------------
T ss_pred             --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE----------------------
Confidence              12344677  688884  44543             689999999973 5433210                      


Q ss_pred             ccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEcc-CCCceeEEeecCCCCCCCC
Q 011368          176 EHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~  252 (487)
                                           ..+...+...+.+++|+|||++++++  .++.|++|+++ ++. ...+...   ....+
T Consensus       137 ---------------------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~~---~~~~~  191 (365)
T 1jof_A          137 ---------------------QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-VELVGSV---DAPDP  191 (365)
T ss_dssp             ---------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-EEEEEEE---ECSST
T ss_pred             ---------------------eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC-EEEeeeE---ecCCC
Confidence                                 00001345678999999999988876  57899999997 333 2211100   11224


Q ss_pred             CCcEEEEEEecCCCCEEEEEeC-CCeEEEEEcc--CCcccc--ccceeecccccccCcccccccccc------ceeEEE-
Q 011368          253 TEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA------SISDIK-  320 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~--~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~------~v~~v~-  320 (487)
                      ...+..++|+|+| +++++++. ++.|.+|++.  +++...  ..+..+..         .+.+|..      .+..++ 
T Consensus       192 g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          192 GDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCTTTSSBSEEEEEEE
T ss_pred             CCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCcccccccccccccEEE
Confidence            5668999999999 88887775 7899999876  343210  00011111         0112222      588999 


Q ss_pred             EcCCCCEEEEEe--CC-----eEEEEeCCCCCceeee---eecccccccccccccCCCCcceeeEEEEcC---CCCEEEE
Q 011368          321 FANDGQHLLSRD--YM-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFAT  387 (487)
Q Consensus       321 ~s~~~~~l~s~~--d~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~s  387 (487)
                      |+|||++|+++.  .+     .|.+|++...++....   ...+....               ..++|+|   ||++|++
T Consensus       262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~sp~~~dg~~l~v  326 (365)
T 1jof_A          262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCEEECTTCTTEEEE
T ss_pred             ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccceecCCCcCCCEEEE
Confidence            999999988653  23     8999999632443321   22222111               3789999   8999999


Q ss_pred             EcCC-CcEEEEEeCCC
Q 011368          388 GSYS-NLLRIFSHGVG  402 (487)
Q Consensus       388 g~~d-g~i~iwd~~~~  402 (487)
                      ++.+ +.|.+|++...
T Consensus       327 ~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          327 TDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSSCEEEEEEEETT
T ss_pred             EEcCCCeEEEEEEchh
Confidence            8865 89999999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.9e-19  Score=179.43  Aligned_cols=271  Identities=11%  Similarity=0.058  Sum_probs=171.6

Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecccee
Q 011368          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (487)
                      ..++|  ++++++ +..+.|++|++||+.+++...+.                                           
T Consensus        19 ~~~~~--s~dg~~-~~~~~d~~i~~~~~~~g~~~~~~-------------------------------------------   52 (719)
T 1z68_A           19 FFPNW--ISGQEY-LHQSADNNIVLYNIETGQSYTIL-------------------------------------------   52 (719)
T ss_dssp             CCCEE--SSSSEE-EEECTTSCEEEEESSSCCEEEEE-------------------------------------------
T ss_pred             CccEE--CCCCeE-EEEcCCCCEEEEEcCCCcEEEEE-------------------------------------------
Confidence            47889  678854 44557999999999998765442                                           


Q ss_pred             eeecccCC---CceeEEEeCCCCCEEEEe-c---------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          197 KVYPHAHD---FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       197 ~~~~~~~~---~~v~~i~~s~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                          ..+.   ..+.+++|||||++|+++ .         ++.|++||+.++ ....     ...+   ...+..++|+|
T Consensus        53 ----~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-~~~~-----~~~l---~~~~~~~~~SP  119 (719)
T 1z68_A           53 ----SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG-EFVR-----GNEL---PRPIQYLCWSP  119 (719)
T ss_dssp             ----CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECC-----SSCC---CSSBCCEEECS
T ss_pred             ----ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC-cccc-----ceec---CcccccceECC
Confidence                2222   248899999999999987 5         689999999843 3310     0112   24578899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceee-cccccccCccccccccccc---------eeEEEEcCCCCEEEEEe-
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIAS---------ISDIKFANDGQHLLSRD-  332 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~---------v~~v~~s~~~~~l~s~~-  332 (487)
                      +| +.|+++. ++.|++||+.+++..    +.. .++     ....+.++...         ..+++|||||++|++++ 
T Consensus       120 DG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~~~-----~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          120 VG-SKLAYVY-QNNIYLKQRPGDPPF----QITFNGR-----ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             ST-TCEEEEE-TTEEEEESSTTSCCE----ECCCCCB-----TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             CC-CEEEEEE-CCeEEEEeCCCCCcE----EEecCCC-----cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence            99 8888885 789999999887642    111 110     00011122222         25899999999999864 


Q ss_pred             C-C---------------------------------eEEEEeCCCCCcee--ee------eecccccccccccccCCCCc
Q 011368          333 Y-M---------------------------------NLKLWDIRMDSTPV--AT------FKIHEHLRPKLCDLYNNDSI  370 (487)
Q Consensus       333 d-~---------------------------------~i~iwd~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~  370 (487)
                      + +                                 .|++||+.+ +...  ..      +..+...             
T Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~-------------  254 (719)
T 1z68_A          189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYY-------------  254 (719)
T ss_dssp             ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEE-------------
T ss_pred             CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcce-------------
Confidence            2 2                                 788899875 4332  11      1123222             


Q ss_pred             ceeeEEEEcCCCCEEEEEcCC----CcEEEEE----eCCCCceeEEE---eccCCccc-----cceEeeCCccccccccc
Q 011368          371 FDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV---EAGKNENR-----KPILQAAPRARRSSLSN  434 (487)
Q Consensus       371 ~~~~~~~~s~d~~~l~sg~~d----g~i~iwd----~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~~~~~~~~~  434 (487)
                        +..++||||++++++....    ..|.+||    +.+++.....-   ..|...+.     .+.|+|  +++.   -.
T Consensus       255 --~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~---l~  327 (719)
T 1z68_A          255 --FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY--DAIS---YY  327 (719)
T ss_dssp             --EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT--TSSC---EE
T ss_pred             --EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC--CCCe---EE
Confidence              2589999998877764432    2488899    76664322221   46777776     788887  5553   00


Q ss_pred             eeeecccce-ecC--CC-CCccccccccCCCeEEEEEcCCCCEEEEecC
Q 011368          435 LTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACANG  479 (487)
Q Consensus       435 l~~g~~~~~-~~w--~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~  479 (487)
                      +++...++. .+|  +. +.....+......|..+.++ |++.|+..+.
T Consensus       328 ~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          328 KIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             EEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred             EEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence            334555555 666  32 22233344455567788777 8887776553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1.2e-17  Score=169.39  Aligned_cols=297  Identities=9%  Similarity=0.016  Sum_probs=184.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEE--ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      .|...|..++|++++-+++..  +.++...||....+..                           ...+..|.      
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------   67 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------   67 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence            467889999999887777776  5688999999643321                           23344444      


Q ss_pred             ccccccccee---------EEEEEecCCCcE-EEEEeC-CCcEEEEEcc--c-cceeEeeecCCCCceeeeecccccccc
Q 011368          108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus       108 ~~~~~~~~I~---------~v~~~~~~~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                            ..+.         ..+|+.+|||+. |+.++. +..|.++++.  + +....+....                 
T Consensus        68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~-----------------  124 (662)
T 3azo_A           68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS-----------------  124 (662)
T ss_dssp             ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------------
T ss_pred             ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------------
Confidence                  2233         556653488988 776553 5566666665  3 4433221000                 


Q ss_pred             ccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC----------CeEEEEEccCC-----Cc
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNLEIS-----DQ  237 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----------~~i~iwd~~~~-----~~  237 (487)
                                                ...|...+.+++|+|||+.|+++ .+          ..|++||+...     +.
T Consensus       125 --------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          125 --------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             --------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             --------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence                                      01156778899999999999987 65          58999999852     33


Q ss_pred             eeEEeecCCCCCC-CCCCcEEEEEEecCCCCEEEEEeCC--------CeEEEEEcc-CCccccccceeecccccccCccc
Q 011368          238 CFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILRDAAESHGSKS  307 (487)
Q Consensus       238 ~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~  307 (487)
                      .. .       +. .+...+..++|+|+| +.|+.++.+        ..|.+||+. ++... ........         
T Consensus       179 ~~-~-------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~~~---------  239 (662)
T 3azo_A          179 VR-E-------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLLGG---------  239 (662)
T ss_dssp             SE-E-------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEEEE---------
T ss_pred             ee-E-------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeCCC---------
Confidence            22 1       33 445677889999999 889887754        379999998 45210 00022222         


Q ss_pred             cccccccceeEEEEcCCCCEEEEEe-CC--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE
Q 011368          308 FFTEIIASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  384 (487)
Q Consensus       308 ~~~~~~~~v~~v~~s~~~~~l~s~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  384 (487)
                          |...+..+.|+|||+++++++ ++  .|++||+.+ ++.......+....       ......++..++|+|++++
T Consensus       240 ----~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~  307 (662)
T 3azo_A          240 ----PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLI  307 (662)
T ss_dssp             ----TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCE
T ss_pred             ----CCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEE
Confidence                246789999999999776665 35  677777754 44433333222110       0111111247899999999


Q ss_pred             EEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC
Q 011368          385 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  446 (487)
Q Consensus       385 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w  446 (487)
                      +++++. +.++||.+.........+..+...+..+. ++..+..+     +++++.+.. .+|
T Consensus       308 ~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~-s~~~~~~~-----~~~~~~~~~~~i~  363 (662)
T 3azo_A          308 AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATL-TVSGTRAV-----GVAASPRTAYEVV  363 (662)
T ss_dssp             EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEE-EEETTEEE-----EEEEETTEEEEEE
T ss_pred             EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEE-ecCCCEEE-----EEEcCCCCCCEEE
Confidence            999999 99999955432223566777766666551 33323333     445555544 666

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=7.3e-18  Score=156.71  Aligned_cols=163  Identities=10%  Similarity=0.070  Sum_probs=110.5

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      .+++.++++++.++.|.+||..+++......                                              .+.
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------------~~~   41 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----------------------------------------------MPD   41 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------CSS
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEe----------------------------------------------cCC
Confidence            4678889999999999999999887554311                                              122


Q ss_pred             CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC------
Q 011368          204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------  275 (487)
                      ...+..++|+|+++.+++ + .++.|.+||+.++ +....+..... -......+.+++|+|+| +++++++.+      
T Consensus        42 ~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~  118 (349)
T 1jmx_B           42 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLSSV-PGEVGRSMYSFAISPDG-KEVYATVNPTQRLND  118 (349)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESCCS-TTEEEECSSCEEECTTS-SEEEEEEEEEEECSS
T ss_pred             CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEcccc-cccccccccceEECCCC-CEEEEEccccccccc
Confidence            224778999999986654 5 7899999999844 34333211100 00002236789999999 888888865      


Q ss_pred             ------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368          276 ------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       276 ------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~  349 (487)
                            +.|.+||+.+++.. .....+..              ...+.+++|+|+|+ +++++ +.|++||+.+ ++.+.
T Consensus       119 ~~~~~~~~i~~~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~~  180 (349)
T 1jmx_B          119 HYVVKPPRLEVFSTADGLEA-KPVRTFPM--------------PRQVYLMRAADDGS-LYVAG-PDIYKMDVKT-GKYTV  180 (349)
T ss_dssp             CEEECCCEEEEEEGGGGGGB-CCSEEEEC--------------CSSCCCEEECTTSC-EEEES-SSEEEECTTT-CCEEE
T ss_pred             ccccCCCeEEEEECCCcccc-ceeeeccC--------------CCcccceeECCCCc-EEEcc-CcEEEEeCCC-Cceec
Confidence                  89999999886532 11122222              24588899999999 55543 4599999986 66666


Q ss_pred             eeec
Q 011368          350 TFKI  353 (487)
Q Consensus       350 ~~~~  353 (487)
                      .+..
T Consensus       181 ~~~~  184 (349)
T 1jmx_B          181 ALPL  184 (349)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            5543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.3e-16  Score=149.24  Aligned_cols=238  Identities=9%  Similarity=-0.004  Sum_probs=144.8

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEcc-ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..+..++|  +|++++|++++.+ .|.+|++. +++.......                                     
T Consensus        40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-------------------------------------   79 (365)
T 1jof_A           40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-------------------------------------   79 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-------------------------------------
T ss_pred             CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-------------------------------------
Confidence            45788999  6899999988887 99999997 6654332100                                     


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCE--EEEe--------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  256 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~--l~s~--------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  256 (487)
                              ..+ +...+++|+|+|+.  ++++              .++.+.+|++...+.....+....   ..+...+
T Consensus        80 --------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~  147 (365)
T 1jof_A           80 --------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGI  147 (365)
T ss_dssp             --------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCE
T ss_pred             --------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcc
Confidence                    111 12556889999994  4343              478999999974444333221100   1244678


Q ss_pred             EEEEEecCCCCEEEEEeC-CCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--
Q 011368          257 TSAEFHPIYCNLLAYSSS-RGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  332 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--  332 (487)
                      .+++|+|+| ++++++.. ++.|++||+. +++...  ...+..           ..|...+..++|+|||++|+++.  
T Consensus       148 ~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          148 HGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeEECCCCCEEEEEECC
Confidence            999999999 87777664 6899999998 564320  111111           01134688999999999988764  


Q ss_pred             CCeEEEEeCCCC-Ccee---eeeecccccccccccccC-CC---CcceeeEEE-EcCCCCEEEEEcCCC------cEEEE
Q 011368          333 YMNLKLWDIRMD-STPV---ATFKIHEHLRPKLCDLYN-ND---SIFDKFECS-VSGDGLHFATGSYSN------LLRIF  397 (487)
Q Consensus       333 d~~i~iwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~s~d~~~l~sg~~dg------~i~iw  397 (487)
                      ++.|.+|++... ++..   ..+.......      .. ..   ....+..++ |+|||++|++++.+.      .|.+|
T Consensus       214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~  287 (365)
T 1jof_A          214 GNRICEYVIDPATHMPVYTHHSFPLIPPGI------PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTC------CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred             CCeEEEEEEeCCCCcEEEccceEEcCCCCc------CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence            389999987531 3332   1121110000      00 00   000125899 999999988776432      89999


Q ss_pred             EeC-CCCceeE--EEeccCCccccceEee
Q 011368          398 SHG-VGSAGGI--TVEAGKNENRKPILQA  423 (487)
Q Consensus       398 d~~-~~~~~~~--~~~~~~~~v~~~~~~~  423 (487)
                      ++. +++....  ....+......++++|
T Consensus       288 ~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             EECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EECCCCCEEEeeeeeecCCCCcccceecC
Confidence            996 4432111  1333444455566665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=9.2e-17  Score=164.59  Aligned_cols=283  Identities=9%  Similarity=0.039  Sum_probs=168.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .....++|  ++++++++++  |++|++||+.+++...+.....                                    
T Consensus        17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~------------------------------------   56 (740)
T 4a5s_A           17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST------------------------------------   56 (740)
T ss_dssp             CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT------------------------------------
T ss_pred             ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechh------------------------------------
Confidence            44678999  5788888876  9999999999987654421100                                    


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                            ..........++|||||+.|+.+ .+         +.+.+||+.++ +..        .+..+...+..++|+|
T Consensus        57 ------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~~--------~l~~~~~~~~~~~~SP  121 (740)
T 4a5s_A           57 ------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLI--------TEERIPNNTQWVTWSP  121 (740)
T ss_dssp             ------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EEC--------CSSCCCTTEEEEEECS
T ss_pred             ------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC-cEE--------EcccCCCcceeeEECC
Confidence                  01111223458899999999998 55         66779999944 322        3556777899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccc---------cceeEEEEcCCCCEEEEEe-C
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~---------~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      +| +.||.+. ++.|.+||+.++....   .+..++     ....+.++.         .....+.|||||++|+..+ |
T Consensus       122 dG-~~la~~~-~~~i~~~~~~~~~~~~---lt~~g~-----~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d  191 (740)
T 4a5s_A          122 VG-HKLAYVW-NNDIYVKIEPNLPSYR---ITWTGK-----EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (740)
T ss_dssp             ST-TCEEEEE-TTEEEEESSTTSCCEE---CCSCCB-----TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             CC-CEEEEEE-CCeEEEEECCCCceEE---EcCCCC-----ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence            99 8888884 6899999998876320   111111     000111222         2234589999999999763 2


Q ss_pred             -Ce-----------------------------------EEEEeCCC---CCc-eeeeeecccccccccccccCCCCccee
Q 011368          334 -MN-----------------------------------LKLWDIRM---DST-PVATFKIHEHLRPKLCDLYNNDSIFDK  373 (487)
Q Consensus       334 -~~-----------------------------------i~iwd~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (487)
                       ..                                   |++||+.+   ... ....+.....       +.  +....+
T Consensus       192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-------~~--~~~~~~  262 (740)
T 4a5s_A          192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-------ML--IGDHYL  262 (740)
T ss_dssp             CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-------HH--TSCEEE
T ss_pred             ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-------CC--CCCeEE
Confidence             43                                   44455442   110 1111111000       00  011123


Q ss_pred             eEEEEcCCCCEEEEEcC----CCcEEEEEeCCCC-------ceeEEEeccCCccc-----cceEeeCCcccccccccee-
Q 011368          374 FECSVSGDGLHFATGSY----SNLLRIFSHGVGS-------AGGITVEAGKNENR-----KPILQAAPRARRSSLSNLT-  436 (487)
Q Consensus       374 ~~~~~s~d~~~l~sg~~----dg~i~iwd~~~~~-------~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~l~-  436 (487)
                      ..++|||||+.++....    +..|++||+.+++       .....-..|...+.     .+.|+|  +++.     ++ 
T Consensus       263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp--DG~~-----l~~  335 (740)
T 4a5s_A          263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNS-----FYK  335 (740)
T ss_dssp             EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSE-----EEE
T ss_pred             EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC--CCCE-----EEE
Confidence            68999999997665532    3479999999886       12222256776665     678887  5654     44 


Q ss_pred             ee-cccce-ecC--CC-CCccccccccCCCeEEEEEcCCCCEEEEec
Q 011368          437 RG-LYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       437 ~g-~~~~~-~~w--~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s  478 (487)
                      .. ..++. ++|  +. +.....+....-.|..+. .+|++.|+..+
T Consensus       336 ~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~  381 (740)
T 4a5s_A          336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYIS  381 (740)
T ss_dssp             EEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEE
T ss_pred             EEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEE
Confidence            33 35554 665  22 233333444445566553 25576665444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=3.4e-16  Score=141.18  Aligned_cols=261  Identities=12%  Similarity=0.152  Sum_probs=178.3

Q ss_pred             hhhhhhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcc
Q 011368           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (487)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (487)
                      ..+.+...|+..  +....+...+.+++++++|+++++...++.|.+||.+...                          
T Consensus        11 ~~~~~~~~~g~~--g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--------------------------   62 (286)
T 1q7f_A           11 QRMIYHCKFGEF--GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--------------------------   62 (286)
T ss_dssp             EEECEEEEECCB--SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--------------------------
T ss_pred             ceeEEEEeccCC--CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--------------------------
Confidence            345555566644  3344567789999999999988888889999999965321                          


Q ss_pred             eeEeeec------CCCcccccccccccccceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeee
Q 011368           92 RYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (487)
Q Consensus        92 ~~~~~~~------~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (487)
                        ...+.      +|.            ..+..+++. .+++.++++... ++.|.+||. +++.....           
T Consensus        63 --~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~-----------  115 (286)
T 1q7f_A           63 --KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF-----------  115 (286)
T ss_dssp             --EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEE-----------
T ss_pred             --EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEe-----------
Confidence              12221      222            467888884 256666666543 889999994 44433221           


Q ss_pred             eccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEee
Q 011368          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD  243 (487)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~  243 (487)
                                                         ...+...+.+++++|+|+++++. .++.|.+||.. + .....+.
T Consensus       116 -----------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~  158 (286)
T 1q7f_A          116 -----------------------------------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G-NVLHKFG  158 (286)
T ss_dssp             -----------------------------------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEEE
T ss_pred             -----------------------------------cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C-CEEEEeC
Confidence                                               12344567899999999988887 88999999975 3 3333321


Q ss_pred             cCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          244 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       244 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                           ...+...+.+++++|+| .++++...++.|++||.... ..    ..+..           .++...+..+++++
T Consensus       159 -----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~-----------~g~~~~p~~i~~d~  216 (286)
T 1q7f_A          159 -----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGG-----------EGITNYPIGVGINS  216 (286)
T ss_dssp             -----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESC-----------TTTSCSEEEEEECT
T ss_pred             -----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEcc-----------CCccCCCcEEEECC
Confidence                 11344568999999999 87777778999999997543 22    33322           01124678999999


Q ss_pred             CCCEEEEEe-CC-eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCC
Q 011368          324 DGQHLLSRD-YM-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       324 ~~~~l~s~~-d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                      +|+++++.. ++ .|.+||..  ++.+..+..+....             .+.+++++|+|+++++ +.|+.|++|++..
T Consensus       217 ~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          217 NGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             TCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            998888775 45 99999963  56666665543211             1148999999987776 5789999999865


Q ss_pred             C
Q 011368          402 G  402 (487)
Q Consensus       402 ~  402 (487)
                      .
T Consensus       281 ~  281 (286)
T 1q7f_A          281 L  281 (286)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=4.6e-17  Score=154.19  Aligned_cols=257  Identities=11%  Similarity=0.042  Sum_probs=155.7

Q ss_pred             CcEEEEEEcCCCCEEEEEecC---CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      ..+.+++|||||++|+.....   ..|.+|++.+++.                            ..+..+..       
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~----------------------------~~l~~~~~-------   80 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA----------------------------VQLTEGKG-------   80 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE----------------------------EECCCSSC-------
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE----------------------------EEeecCCC-------
Confidence            347788999999998877543   3677778776642                            12222220       


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          .....+.|  +|+|++|+.++.++.|++||+.+++...+......        ..+++..++........    ..
T Consensus        81 ----~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~----~~  142 (396)
T 3c5m_A           81 ----DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLV----GI  142 (396)
T ss_dssp             ----BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEE----EE
T ss_pred             ----CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCccc----cc
Confidence                22233678  68999999999999999999998876554321111        01111111111100000    00


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                                      ....+.|+|+++.++.+      .+..|++||+.++ ....+        ..+...+..+.|+|
T Consensus       143 ----------------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~~--------~~~~~~~~~~~~sp  197 (396)
T 3c5m_A          143 ----------------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-ELEVI--------HQDTAWLGHPIYRP  197 (396)
T ss_dssp             ----------------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-CEEEE--------EEESSCEEEEEEET
T ss_pred             ----------------cccccccCCCCcceeeeeeccCCCcceEEEEECCCC-cEEee--------ccCCcccccceECC
Confidence                            00124578898887653      4568999999843 33332        23456788999999


Q ss_pred             -CCCCEEEEEeCC------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C--
Q 011368          264 -IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--  333 (487)
Q Consensus       264 -~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d--  333 (487)
                       ++ ..|+..+.+      ..|.+||+..++.     +.+..+.           ....+..+.|+|||++|+..+ +  
T Consensus       198 ~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~-----------~~~~~~~~~~spdg~~l~~~~~~~~  260 (396)
T 3c5m_A          198 FDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHA-----------EGESCTHEFWIPDGSAMAYVSYFKG  260 (396)
T ss_dssp             TEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCC-----------TTEEEEEEEECTTSSCEEEEEEETT
T ss_pred             CCC-CEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccC-----------CCccccceEECCCCCEEEEEecCCC
Confidence             77 767766543      3588888766532     1111100           013578899999999877642 2  


Q ss_pred             ---CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEc----------------CCCc
Q 011368          334 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGS----------------YSNL  393 (487)
Q Consensus       334 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~----------------~dg~  393 (487)
                         +.|++||+.+ +....... ...                 ..+.|+| ||+++++++                .++.
T Consensus       261 ~~~~~l~~~d~~~-g~~~~l~~-~~~-----------------~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          261 QTDRVIYKANPET-LENEEVMV-MPP-----------------CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             TCCEEEEEECTTT-CCEEEEEE-CCS-----------------EEEEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             CccceEEEEECCC-CCeEEeee-CCC-----------------CCCCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence               3499999976 44332221 111                 1388999 999888754                3478


Q ss_pred             EEEEEeCCCC
Q 011368          394 LRIFSHGVGS  403 (487)
Q Consensus       394 i~iwd~~~~~  403 (487)
                      |++||+.+++
T Consensus       322 i~~~d~~~~~  331 (396)
T 3c5m_A          322 LYVLNTKAKS  331 (396)
T ss_dssp             EEEEETTTTB
T ss_pred             EEEEecccCc
Confidence            9999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=8.5e-16  Score=141.86  Aligned_cols=244  Identities=12%  Similarity=0.084  Sum_probs=162.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..|.+++|++++..++..+.++.++.|...                              ....+..+.           
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~-----------   44 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG-----------   44 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC-----------
T ss_pred             cccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC-----------
Confidence            357889999998888777778889999321                              123445554           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       ..+.+++|  ++++.+++++..++.|.+||..+++.....                                       
T Consensus        45 -~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------   82 (333)
T 2dg1_A           45 -LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF---------------------------------------   82 (333)
T ss_dssp             -CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE---------------------------------------
T ss_pred             -ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe---------------------------------------
Confidence             56789999  578887778888999999999887654331                                       


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cC----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                              ..+...+.+++++|++++++++ .+    +.|.+||.+... ...++.     .......+.+++++|+| .
T Consensus        83 --------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~-----~~~~~~~~~~i~~d~~g-~  147 (333)
T 2dg1_A           83 --------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIE-----DLSTAYCIDDMVFDSKG-G  147 (333)
T ss_dssp             --------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEEC-----SSSSCCCEEEEEECTTS-C
T ss_pred             --------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEc-----cCccCCcccceEECCCC-C
Confidence                    2345679999999999988887 66    689999988433 222221     01234578999999998 7


Q ss_pred             EEEEEeC------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEE
Q 011368          268 LLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLW  339 (487)
Q Consensus       268 ~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iw  339 (487)
                      ++++...      .+.|..+|..+++.     ..+..             ....+..++|+|+|+.|+.+.  ++.|++|
T Consensus       148 l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~-------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~  209 (333)
T 2dg1_A          148 FYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQ-------------NISVANGIALSTDEKVLWVTETTANRLHRI  209 (333)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEE-------------EESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EEEEeccccccCCCceEEEEeCCCCEE-----EEeec-------------CCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence            7776653      34566666554432     11111             023578899999998766543  4899999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      |+...+..+..+......     .+...   ..+..++++++|+++++...++.|.+||..
T Consensus       210 d~~~~g~~~~~~~~~~~~-----~~~~~---~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          210 ALEDDGVTIQPFGATIPY-----YFTGH---EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EECTTSSSEEEEEEEEEE-----ECCSS---SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EecCCCcCcccccceEEE-----ecCCC---CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            996433333222100000     00000   012479999999988887778899999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=2.4e-15  Score=138.38  Aligned_cols=259  Identities=11%  Similarity=0.079  Sum_probs=171.5

Q ss_pred             CcEEEEEEcCCCCEEEEEecC------------------------CcEEEEEeeCCcCCCCcccchhhhhccccccccCC
Q 011368           33 DIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (487)
                      +.|.+++++|+|+++++...+                        +.|.+||..+++.                      
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------------------   81 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------------------   81 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence            469999999999999888777                        3688888766643                      


Q ss_pred             CcceeEeeec-CCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccc-eeEeeecCCCCceeeeec
Q 011368           89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENT  166 (487)
Q Consensus        89 ~~~~~~~~~~-~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~  166 (487)
                           ...+. ++-            .....|++  +++|.++++...++.|++|+..... ...........       
T Consensus        82 -----~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-------  135 (329)
T 3fvz_A           82 -----LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-------  135 (329)
T ss_dssp             -----EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-------
T ss_pred             -----EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-------
Confidence                 22222 222            56889999  5788988888889999999986542 11111000000       


Q ss_pred             cccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe--cCCeEEEEEccCCCceeEEee
Q 011368          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVD  243 (487)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~  243 (487)
                                                     -.-.++......++++| +++++++.  .++.|++|+..  +.....+.
T Consensus       136 -------------------------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~--g~~~~~~~  182 (329)
T 3fvz_A          136 -------------------------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS--GKFVTQWG  182 (329)
T ss_dssp             -------------------------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT--SCEEEEEC
T ss_pred             -------------------------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC--CCEEEEec
Confidence                                           00023455688999999 78888876  48999999954  34443331


Q ss_pred             cCCCC---CCCCCCcEEEEEEecC-CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEE
Q 011368          244 MKPSN---MDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  319 (487)
Q Consensus       244 ~~~~~---~~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v  319 (487)
                      .....   ..++-.....++++|+ + .++++...++.|++||..+++..    ..+..           ..+...+..+
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-----------~~~~~~~~~~  246 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEFV----REIKH-----------ASFGRNVFAI  246 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCEE----EEECC-----------TTTTTCEEEE
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcEE----EEEec-----------cccCCCccee
Confidence            11000   0122345799999998 6 77777788999999999877644    44432           1223567889


Q ss_pred             EEcCCCCEEEEE-------e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC
Q 011368          320 KFANDGQHLLSR-------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  391 (487)
Q Consensus       320 ~~s~~~~~l~s~-------~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d  391 (487)
                      +++| +..+++.       . ...|++||..+ ++.+..+......            ......++++|+|.++++...+
T Consensus       247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------FDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             EEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------CSSEEEEEECTTSEEEEEESSS
T ss_pred             eecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------cCCeeEEEECCCCCEEEEECCC
Confidence            9999 4333322       1 25899999986 7777776421110            0112589999999888888899


Q ss_pred             CcEEEEEeCCC
Q 011368          392 NLLRIFSHGVG  402 (487)
Q Consensus       392 g~i~iwd~~~~  402 (487)
                      +.|++|++...
T Consensus       313 ~~I~~~~~~~~  323 (329)
T 3fvz_A          313 NTVWKFTLTEK  323 (329)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CEEEEEeCCcc
Confidence            99999998743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=1.5e-14  Score=134.64  Aligned_cols=305  Identities=10%  Similarity=0.006  Sum_probs=186.5

Q ss_pred             CCCEEEEEe------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        43 ~~~~l~~g~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      +++++++..      .|+.|.+||..+++.                           ...+..+.            .+ 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p-   53 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG-   53 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence            555555543      477999999877653                           34444443            43 


Q ss_pred             eEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                       .++|  +|++++++++.          .++.|.+||..+.+...........                           
T Consensus        54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---------------------------  103 (361)
T 2oiz_A           54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---------------------------  103 (361)
T ss_dssp             -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------------------------
T ss_pred             -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------------------------
Confidence             7888  68999998876          3678999999877655432110000                           


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEEEEe
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                    ..+......++++|||++|+++ .  ++.|.+||+.+. +.+.. +.        . .....+.+.
T Consensus       104 --------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~--------~-~~~~~v~~~  159 (361)
T 2oiz_A          104 --------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTA--------A-AGCWSVIPQ  159 (361)
T ss_dssp             --------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGG--------G-TTEEEEEEC
T ss_pred             --------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEec--------C-CCcceeEEc
Confidence                          1123457789999999999987 4  589999999954 44332 21        1 112335677


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccC-Cccccccc--eeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEE
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSA--RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  338 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~i  338 (487)
                      |++...+++.+.||.+.+|++.. ++......  ..+..             ...+ ..+.+++++..++..+ ++.|.+
T Consensus       160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g~~~~~~~~~~~v~v  225 (361)
T 2oiz_A          160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-------------KDDP-IFIAPALDKDKAHFVSYYGNVYS  225 (361)
T ss_dssp             TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-------------TTSC-BCSCCEECSSEEEEEBTTSEEEE
T ss_pred             CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-------------CCCc-eEEEecccCCEEEEEeCCCeEEE
Confidence            87657888889999999999865 33210000  01111             1111 1233466776666554 489999


Q ss_pred             EeCCCCCce-eeeeecccc-cccccccccCCCCcceeeEEEEcCCCCEEEEEcC-----------CCcEEEEEeCCCCce
Q 011368          339 WDIRMDSTP-VATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------SNLLRIFSHGVGSAG  405 (487)
Q Consensus       339 wd~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-----------dg~i~iwd~~~~~~~  405 (487)
                      +|+...... +..+..... ......   ....   ...++|+||++.++++..           .+.|.+||+.++ +.
T Consensus       226 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~p~g---~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~  298 (361)
T 2oiz_A          226 ADFSGDEVKVDGPWSLLNDEDKAKNW---VPGG---YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QR  298 (361)
T ss_dssp             EECSSSSCEEEEEEESCCHHHHHTTC---EECC---SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EE
T ss_pred             EEecCCCceecccccccCcccccccc---ccCC---eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cE
Confidence            998642211 122211100 000000   0000   013789999888877643           348999999988 45


Q ss_pred             eEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC----CccccccccCCCeEEEEEcCCCC
Q 011368          406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS----GHHELSYNLSSKLLHLAWHPTTN  472 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~----~~~~~~~~~~~~v~~~~~spd~~  472 (487)
                      ...+..+.  ...++++|  ++++     |.+++. +. .+|+..    +.+.........-..++++|||.
T Consensus       299 v~~i~~~~--p~~ia~sp--dg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          299 VARIPGRD--ALSMTIDQ--QRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECTT--CCEEEEET--TTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEecCC--eeEEEECC--CCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            77777776  88999998  5666     666665 55 999443    23333345666778999999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=5e-16  Score=146.68  Aligned_cols=251  Identities=13%  Similarity=0.068  Sum_probs=153.3

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .+..++|+|||++|+.++.++.|++||+.+++..                           ..+..+.            
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~---------------------------~~~~~~~------------  122 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN---------------------------VVYQVPA------------  122 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCT------------
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---------------------------eeeechh------------
Confidence            3446789999999999999999999999887531                           2233333            


Q ss_pred             cceeEEEEEecCCCcEEEEE----------------------eCCCcEEEEEccccceeEeeecCCCCceeeeecccccc
Q 011368          114 EKINRVRWCAAPNGSMFILS----------------------TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      ..+....|..++++.+++..                      ..+..|.+||+.+++...+                   
T Consensus       123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-------------------  183 (388)
T 3pe7_A          123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-------------------  183 (388)
T ss_dssp             TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-------------------
T ss_pred             hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-------------------
Confidence            44545555446888887742                      2346788888887765443                   


Q ss_pred             ccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-c------CCeEEEEEccCCCceeEEee
Q 011368          172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-D------DLRINLWNLEISDQCFNIVD  243 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~  243 (487)
                                                   ..+...+..++|+| ||+.|+.+ .      ...|.++|... +....   
T Consensus       184 -----------------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~~~~---  230 (388)
T 3pe7_A          184 -----------------------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-TNMRK---  230 (388)
T ss_dssp             -----------------------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-CCCEE---
T ss_pred             -----------------------------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-CceEE---
Confidence                                         34556788999999 99998876 4      23777888763 32221   


Q ss_pred             cCCCCCCCCC--CcEEEEEEecCCCCEEEEEeC-CC----eEEEEEccCCccccccceeecccccccCccccccccc-cc
Q 011368          244 MKPSNMDDLT--EVITSAEFHPIYCNLLAYSSS-RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-AS  315 (487)
Q Consensus       244 ~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~  315 (487)
                           +..+.  ..+..+.|+|+| +.|+..+. ++    .|.+||+.+++..  .+..+..+           .|. ..
T Consensus       231 -----l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~-----------~~~~~~  291 (388)
T 3pe7_A          231 -----VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPAC-----------SHLMSN  291 (388)
T ss_dssp             -----SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCE-----------EEEEEC
T ss_pred             -----eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCc-----------eeeeec
Confidence                 22233  357789999999 76655443 22    3999999987632  01111110           000 00


Q ss_pred             eeEEEEcCCCCEEEEE---------e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368          316 ISDIKFANDGQHLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  385 (487)
Q Consensus       316 v~~v~~s~~~~~l~s~---------~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  385 (487)
                      ...+.|+|||+.|+..         . +..|++||+.+ +. +..+..+......   +.. +....+..++|+|||+.|
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~---~~~-~~~~~~~~~~~spDg~~l  365 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKV---FEG-DRQVTHPHPSFTPDDKQI  365 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCC---BTT-BSSTTCCCCEECTTSSEE
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCcccc---ccc-ccccCCCCccCCCCCCEE
Confidence            1223799999988742         2 36899999975 44 3444444330000   000 000001478999999988


Q ss_pred             EEEc-CCCcEEEEEeC
Q 011368          386 ATGS-YSNLLRIFSHG  400 (487)
Q Consensus       386 ~sg~-~dg~i~iwd~~  400 (487)
                      +..+ .+|...||.+.
T Consensus       366 ~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          366 LFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EEEECTTSSCEEEEEE
T ss_pred             EEEecCCCceeEEEEE
Confidence            8665 46766676654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=2.8e-15  Score=152.01  Aligned_cols=225  Identities=13%  Similarity=0.006  Sum_probs=137.8

Q ss_pred             EEEe--CCCCCE-EEEe--cCCeEEEEEcc--CCCceeEEeecCCCCCCC-----CCCcEEEEEEecCCCCEEEEEeCC-
Q 011368          209 SISN--NSDCET-FVSA--DDLRINLWNLE--ISDQCFNIVDMKPSNMDD-----LTEVITSAEFHPIYCNLLAYSSSR-  275 (487)
Q Consensus       209 ~i~~--s~~~~~-l~s~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~l~~~~~d-  275 (487)
                      ...|  ||||+. |+.+  .+..|+++++.  ..+....        +..     |...+.+++|+|+| +.|++++.+ 
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--------l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~  151 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--------LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEF  151 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--------CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--------ccCCccCCCCccccCcEECCCC-CEEEEEEecc
Confidence            4445  499998 7776  45666666664  1022222        222     56678899999999 999888876 


Q ss_pred             ---------CeEEEEEccC------Cccccccceeec-ccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----
Q 011368          276 ---------GFVRLVDMRQ------SALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----  333 (487)
Q Consensus       276 ---------g~i~iwd~~~------~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----  333 (487)
                               ..|.+||+.+      ++.     +.+. .             +...+..++|||||++|+.++ +     
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~  213 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-----RELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMP  213 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTCGGGS-----EESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred             cCCCCCCceeEEEEEECCCCccccCCce-----eEEEec-------------CCCcccCceECCCCCEEEEEECCCCCCC
Confidence                     5899999987      432     2222 2             135678899999999998654 3     


Q ss_pred             ---CeEEEEeCCCCC---ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC--cEEEEEeCCCCce
Q 011368          334 ---MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAG  405 (487)
Q Consensus       334 ---~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg--~i~iwd~~~~~~~  405 (487)
                         ..|++||+...+   ........+...+               ..+.|+|||+++++++.++  .|++||+.+++. 
T Consensus       214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~-  277 (662)
T 3azo_A          214 WEGTELKTARVTEDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA-  277 (662)
T ss_dssp             TTCEEEEEEEECTTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE-
T ss_pred             CCCcEEEEEEECCCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCCce-
Confidence               379999997324   3333333333322               5899999999888888888  555555545532 


Q ss_pred             eEEEeccCCc---------cccceEeeCCccccccccceeeecccce-ecC--CC-CCccccccccCCCeEEEEEcCCCC
Q 011368          406 GITVEAGKNE---------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTN  472 (487)
Q Consensus       406 ~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~-~~~~~~~~~~~~~v~~~~~spd~~  472 (487)
                       ..+..+...         +..+++++  ++++     ++++.. +. ++|  +. +.....+..+...+..+ |+++++
T Consensus       278 -~~l~~~~~~~~~p~w~~~~~~~~~~~--~~~~-----~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~  347 (662)
T 3azo_A          278 -TQLCRREEEFAGPLWTPGMRWFAPLA--NGLI-----AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGT  347 (662)
T ss_dssp             -EESSCCSSBSSCCCCSTTCCSEEECT--TSCE-----EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETT
T ss_pred             -eecccccccccCccccccCceEeEeC--CCEE-----EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCC
Confidence             222222222         23445544  5666     777777 77 899  32 23344445566667666 255555


Q ss_pred             EEE--EecCC---eEEEEe
Q 011368          473 LIA--CANGN---SLFFHY  486 (487)
Q Consensus       473 ~la--~~s~~---~~~i~~  486 (487)
                      .++  +++.+   .++++.
T Consensus       348 ~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          348 RAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             EEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEcCCCCCCEEEEEE
Confidence            443  44444   255443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=1.5e-13  Score=123.71  Aligned_cols=243  Identities=9%  Similarity=0.100  Sum_probs=162.3

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.++++  ++++.++++...++.|.+||.... .........                                    
T Consensus        30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~------------------------------------   70 (286)
T 1q7f_A           30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECG------------------------------------   70 (286)
T ss_dssp             SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBS------------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEECCCCEEEEECCCCc-EEEEecccC------------------------------------
Confidence            56889999  578888888888999999998743 322210000                                    


Q ss_pred             ceeeeecccCCCceeEEEe-CCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~-s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                           ...++...+..+++ .++++++++. . ++.|.+||..  +.....+.      ..+...+.+++++|+| ++++
T Consensus        71 -----~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~~------~~~~~~~~~i~~~~~g-~l~v  136 (286)
T 1q7f_A           71 -----KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATILQHPRGVTVDNKG-RIIV  136 (286)
T ss_dssp             -----SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTCSCEEEEEECTTS-CEEE
T ss_pred             -----CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEec------CccCCCceEEEEeCCC-CEEE
Confidence                 00244566889999 5788777777 4 8999999944  33443321      1234568999999999 8888


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      +...++.|.+||... +..    ..+..           ..+...+..++++|+|+++++.. ++.|++||..  +..+.
T Consensus       137 ~~~~~~~i~~~~~~g-~~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~  198 (286)
T 1q7f_A          137 VECKVMRVIIFDQNG-NVL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLR  198 (286)
T ss_dssp             EETTTTEEEEECTTS-CEE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEE
T ss_pred             EECCCCEEEEEcCCC-CEE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEE
Confidence            877889999999653 222    22321           01134688999999998777765 5999999974  55555


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC-cEEEEEeCCCCceeEEEeccCCccccceEeeCCccc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  428 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  428 (487)
                      .+......             ..+..++++++|+++++...++ .|.+|+.. + .....+..+..              
T Consensus       199 ~~~~~g~~-------------~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~~~~--------------  249 (286)
T 1q7f_A          199 QIGGEGIT-------------NYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVK--------------  249 (286)
T ss_dssp             EESCTTTS-------------CSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSC--------------
T ss_pred             EEccCCcc-------------CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcccCC--------------
Confidence            55433210             0125899999999888888776 99999954 3 22222211100              


Q ss_pred             cccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          429 RSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       429 ~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                                                    ...+.+++++|+|+++++..++.+++|.
T Consensus       250 ------------------------------~~~~~~i~~~~~g~l~vs~~~~~v~v~~  277 (286)
T 1q7f_A          250 ------------------------------HAQCFDVALMDDGSVVLASKDYRLYIYR  277 (286)
T ss_dssp             ------------------------------CSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred             ------------------------------CCcceeEEECCCCcEEEECCCCeEEEEE
Confidence                                          0135688999999887776666788886

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=2.5e-14  Score=129.62  Aligned_cols=241  Identities=8%  Similarity=-0.027  Sum_probs=165.4

Q ss_pred             ccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        31 h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      +.....+++|+|+|+ +++++..++.|.+|+..++ .                            ..+..+.        
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~--------   68 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS--------   68 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence            455688999999998 7788888999999997655 2                            3344444        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..+.++++  +++|.++++...++.|.+||..+++........                                 
T Consensus        69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~---------------------------------  109 (296)
T 3e5z_A           69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSF---------------------------------  109 (296)
T ss_dssp             ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEE---------------------------------
T ss_pred             ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc---------------------------------
Confidence                66899999  678888777777789999999777654331100                                 


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEE----e-c-------------CCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s----~-~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                                .......+++++++|+|+++++    + .             .+.|..++..  +.....        ..
T Consensus       110 ----------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~--------~~  169 (296)
T 3e5z_A          110 ----------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAP--------IR  169 (296)
T ss_dssp             ----------TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEE--------EC
T ss_pred             ----------CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEe--------ec
Confidence                      0111235678999999998887    3 1             2345555443  332221        23


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc-CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      +......++|+|++ +.+++.+.++.|.+||+. .+... .....+..             +...+..++++++|+++++
T Consensus       170 ~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~~~-------------~~~~p~~i~~d~~G~l~v~  234 (296)
T 3e5z_A          170 DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE-YQGVHFTV-------------EPGKTDGLRVDAGGLIWAS  234 (296)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE-EEEEEECC-------------SSSCCCSEEEBTTSCEEEE
T ss_pred             CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc-CCCeEeeC-------------CCCCCCeEEECCCCCEEEE
Confidence            44567899999999 877777778999999997 44320 00122211             1345678999999997777


Q ss_pred             EeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEE-cCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       331 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      . ++.|.+||..  ++.+..+..+.. +               ++++| +|+++.|++++.+ .+.-++.+++
T Consensus       235 ~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          235 A-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             E-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             c-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence            7 7899999985  666777765554 2               48899 5899988888876 3444555544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.67  E-value=5.1e-14  Score=131.05  Aligned_cols=276  Identities=9%  Similarity=0.023  Sum_probs=168.4

Q ss_pred             EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .++|+|||++|++++          .++.|.+||..+.+.                           ..++......   
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~---  103 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR---  103 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence            899999999999886          367899999876643                           2222211000   


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcc
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                         .........++|  +|+|++|+++..  +++|.+||+.+++.... .                              
T Consensus       104 ---~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i------------------------------  148 (361)
T 2oiz_A          104 ---VQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT------------------------------  148 (361)
T ss_dssp             ---CCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG------------------------------
T ss_pred             ---cccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe------------------------------
Confidence               000034567888  689999988863  68999999998865432 1                              


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCC-CEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                       . . .....+.+.|++ ..+++. .||.+.+|+....++....... ...+...... ..+.+
T Consensus       149 -----------------~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-~~~~~~~~~~-~~~~~  207 (361)
T 2oiz_A          149 -----------------A-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-KQMFSVKDDP-IFIAP  207 (361)
T ss_dssp             -----------------G-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-CCCSCTTTSC-BCSCC
T ss_pred             -----------------c-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-cceEcCCCCc-eEEEe
Confidence                             0 1 111224566665 455555 8888888888754444322110 0112222222 23344


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e--------
Q 011368          262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D--------  332 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~--------  332 (487)
                      +|++ ..++..+.++.+.++|+.......  ...+........... +  .......++++|+++.++++ .        
T Consensus       208 ~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~~~-~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~  281 (361)
T 2oiz_A          208 ALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDKAKN-W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTH  281 (361)
T ss_dssp             EECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHHHTT-C--EECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred             cccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCccccccc-c--ccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence            6777 777778889999999997654210  011111000000000 0  00112237899998877764 3        


Q ss_pred             ---CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC-ceeEE
Q 011368          333 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGIT  408 (487)
Q Consensus       333 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~-~~~~~  408 (487)
                         .+.|.+||+.+ .+.+..+..+. +                .+++|+|||++|++++. +.|.+||..+++ +....
T Consensus       282 ~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          282 KFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             TCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             cCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence               24899999997 88888888776 3                49999999999998887 999999999872 22444


Q ss_pred             EeccCCccccceEee
Q 011368          409 VEAGKNENRKPILQA  423 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~  423 (487)
                      +......-..+++.|
T Consensus       343 i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          343 IEGAAEASLQVQFHP  357 (361)
T ss_dssp             ETTSCSSEEEEEECC
T ss_pred             eccCCCCcEEEEecC
Confidence            444444445566665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=2.3e-12  Score=116.54  Aligned_cols=238  Identities=9%  Similarity=0.029  Sum_probs=161.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...+.+++++++|+++++...++.|.+||.. ++..                          ...+..+.          
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--------------------------~~~~~~~~----------   56 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT--------------------------EYPLPTPD----------   56 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--------------------------EEECSSTT----------
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--------------------------EecCCccc----------
Confidence            4579999999999988776667899999976 3210                          01111222          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        ..+..+++  .+++.++++...++.|..|+.. ++.....                                      
T Consensus        57 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~--------------------------------------   93 (299)
T 2z2n_A           57 --AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEYT--------------------------------------   93 (299)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred             --CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEEe--------------------------------------
Confidence              56888998  5788877777778889999876 3322210                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                              +......+.++++.++++++++. .++.|..||.. +. ....      ........+.+++++++| .+++
T Consensus        94 --------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~------~~~~~~~~~~~i~~~~~g-~l~v  156 (299)
T 2z2n_A           94 --------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK-IREY------ELPNKGSYPSFITLGSDN-ALWF  156 (299)
T ss_dssp             --------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEE------ECSSTTCCEEEEEECTTS-CEEE
T ss_pred             --------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC-EEEe------cCCCCCCCCceEEEcCCC-CEEE
Confidence                    12234568899999999988888 78899999983 33 2221      122334568999999998 8877


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      +...++.|..||. +++..     .+..           ......+..++++++|++.++.. .+.|.+||. + +... 
T Consensus       157 ~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~-  216 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S-GEIT-  216 (299)
T ss_dssp             EETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEE-
T ss_pred             EeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-C-CcEE-
Confidence            7777889999998 55422     1111           01124578999999998776664 489999998 4 4432 


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      .+.....             ...+.+++++++|+.+++...++.|.+||.
T Consensus       217 ~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          217 EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            2221110             001258999999997777667889999997

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=1.5e-13  Score=126.40  Aligned_cols=258  Identities=9%  Similarity=0.030  Sum_probs=161.1

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCC------------------------cEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDK------------------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                      +.+.+|++  +++|+++++...++                        .|.+||..+++....                 
T Consensus        24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------   84 (329)
T 3fvz_A           24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-----------------   84 (329)
T ss_dssp             SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred             CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence            67999999  68899888887774                        566666665554322                 


Q ss_pred             ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--C
Q 011368          170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--P  246 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~  246 (487)
                                                   +-.++......++++|+|+++++. .++.|++|+.......+..+...  +
T Consensus        85 -----------------------------~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~  135 (329)
T 3fvz_A           85 -----------------------------SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP  135 (329)
T ss_dssp             -----------------------------ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC
T ss_pred             -----------------------------cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC
Confidence                                         112445578899999999988888 89999999987332133322110  0


Q ss_pred             CCCCCCCCcEEEEEEec-CCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          247 SNMDDLTEVITSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~p-~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                      ..-.++...+..++++| ++ .++++.+ .++.|++||. ++...    ..+.......   ....++-.....++++|+
T Consensus       136 g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          136 GSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             CCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETT
T ss_pred             CCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECC
Confidence            00023445689999999 77 7888776 6899999994 44433    3333210000   000112345789999999


Q ss_pred             -CCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcC------CCCEEEEEcCCCcEEE
Q 011368          325 -GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRI  396 (487)
Q Consensus       325 -~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------d~~~l~sg~~dg~i~i  396 (487)
                       +.++++.. ++.|++||..+ ++.+..+.......             .+..++++|      +|+..++...+..|++
T Consensus       207 ~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~  272 (329)
T 3fvz_A          207 LDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFV  272 (329)
T ss_dssp             TTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred             CCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence             55555544 48999999985 77777775432211             114788888      3333333444568999


Q ss_pred             EEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEE
Q 011368          397 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIAC  476 (487)
Q Consensus       397 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~  476 (487)
                      |++.+++. ...+...                                           ..+......|+++|||.++++
T Consensus       273 ~~~~~g~~-~~~~~~~-------------------------------------------~~~~~~p~~ia~~~dG~lyva  308 (329)
T 3fvz_A          273 MNFSSGEI-IDVFKPV-------------------------------------------RKHFDMPHDIVASEDGTVYIG  308 (329)
T ss_dssp             EETTTCCE-EEEECCS-------------------------------------------SSCCSSEEEEEECTTSEEEEE
T ss_pred             EEcCCCeE-EEEEcCC-------------------------------------------CCccCCeeEEEECCCCCEEEE
Confidence            99887743 2222100                                           011225678999999977776


Q ss_pred             ec-CCeEEEEe
Q 011368          477 AN-GNSLFFHY  486 (487)
Q Consensus       477 ~s-~~~~~i~~  486 (487)
                      .. .+.+.+|.
T Consensus       309 d~~~~~I~~~~  319 (329)
T 3fvz_A          309 DAHTNTVWKFT  319 (329)
T ss_dssp             ESSSCCEEEEE
T ss_pred             ECCCCEEEEEe
Confidence            66 44577775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=6e-14  Score=143.10  Aligned_cols=247  Identities=10%  Similarity=0.069  Sum_probs=161.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCC-----cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ...+..++|||||++||.+..++     .|++||+.+++..                          ...+.  .     
T Consensus       124 ~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------------------~~~~~--~-----  170 (710)
T 2xdw_A          124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL--------------------------PDVLE--R-----  170 (710)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE--------------------------EEEEE--E-----
T ss_pred             CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--------------------------ccccc--C-----
Confidence            34688999999999999776543     8999999887541                          00111  1     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCc----------------EEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                             ..+..++|  +|||+.|+.++.++.                |++|++.+++....                  
T Consensus       171 -------~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~------------------  223 (710)
T 2xdw_A          171 -------VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI------------------  223 (710)
T ss_dssp             -------ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE------------------
T ss_pred             -------cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce------------------
Confidence                   23567999  689999999887765                89999877652111                  


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-c-----CCeEEEEEccC------CCc
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEI------SDQ  237 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~-----d~~i~iwd~~~------~~~  237 (487)
                                                ..+ ...+...+..+.|+|||++|+.+ .     +..|++||+.+      +..
T Consensus       224 --------------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          224 --------------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             --------------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             --------------------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                                      000 12345567899999999999886 4     57899999985      321


Q ss_pred             eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC----CeEEEEEccCCccccccceeecccccccCccccccccc
Q 011368          238 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  313 (487)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  313 (487)
                      ....       +..+...+.. .|+|+| ..|+..+..    +.|.+||+.++...  ..+.+..|            +.
T Consensus       278 ~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~------------~~  334 (710)
T 2xdw_A          278 KWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVPE------------HE  334 (710)
T ss_dssp             CCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC------------CS
T ss_pred             ceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccCC------------CC
Confidence            2222       2233444444 488998 766666543    36999998876310  01222221            11


Q ss_pred             -cceeEEEEcCCCCEEEEEe-CC--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-
Q 011368          314 -ASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-  388 (487)
Q Consensus       314 -~~v~~v~~s~~~~~l~s~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-  388 (487)
                       ..+..+.|++++.++++.. ++  .|++|++.+ ++.+..+..+...+               ..++++|+++.|+.. 
T Consensus       335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~~~~s~d~~~l~~~~  398 (710)
T 2xdw_A          335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VGYSGQKKDTEIFYQF  398 (710)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EEEECCTTCSEEEEEE
T ss_pred             CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EEEecCCCCCEEEEEE
Confidence             2578889997777777764 45  567778754 66666666553322               478899998766633 


Q ss_pred             ---cCCCcEEEEEeCCCC
Q 011368          389 ---SYSNLLRIFSHGVGS  403 (487)
Q Consensus       389 ---~~dg~i~iwd~~~~~  403 (487)
                         ...+.|++||+.+++
T Consensus       399 ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          399 TSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ECSSCCCEEEEEETTSSS
T ss_pred             eCCCCCCEEEEEECCCCc
Confidence               235789999998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=1.4e-12  Score=127.68  Aligned_cols=317  Identities=9%  Similarity=-0.007  Sum_probs=194.3

Q ss_pred             CCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEE
Q 011368           42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  121 (487)
Q Consensus        42 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~  121 (487)
                      |.+.++++...++.|.++|..+++.                           +..+...             ..+..+.|
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------~~~i~~g-------------~~p~~v~~  204 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTG-------------YAVHISRL  204 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECS-------------SCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeE---------------------------EEEEeCC-------------CCccceEE
Confidence            4455667777889999999887754                           2333322             34678899


Q ss_pred             EecCCCcEEEEEeCCCcEEEEEcc--ccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeee
Q 011368          122 CAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVY  199 (487)
Q Consensus       122 ~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (487)
                        +|+|+++++++.|+.|.+||+.  +.+.....                                              
T Consensus       205 --SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----------------------------------------------  236 (567)
T 1qks_A          205 --SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------------------------------------------  236 (567)
T ss_dssp             --CTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----------------------------------------------
T ss_pred             --CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE----------------------------------------------
Confidence              6899999999999999999995  54433221                                              


Q ss_pred             cccCCCceeEEEeC----CCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCC---CCCC-cEEEEEEecCCCCEE
Q 011368          200 PHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-VITSAEFHPIYCNLL  269 (487)
Q Consensus       200 ~~~~~~~v~~i~~s----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~-~v~~v~~~p~~~~~l  269 (487)
                       .. ......++|+    |||++++++  .+++|.++|..+ .+.+..+........   .|.. .+..+..+++++.++
T Consensus       237 -~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          237 -KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             -EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             -ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence             11 2235789999    699998887  789999999885 445554432211111   1222 678899999885666


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCce
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP  347 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~  347 (487)
                      +....+|.|.++|....+...  +..+..              ......+.|+|+|++++++.  ++.|.++|+.+ ++.
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl  376 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKL  376 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEE
T ss_pred             EEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcE
Confidence            666678999999987653210  112221              23466889999999988764  49999999987 676


Q ss_pred             eeeeec-ccccccccccccCCCCcceeeEEE-EcCCCC-EEEEEc-CCCcEEEEEeCCCC------ceeEEEeccCCccc
Q 011368          348 VATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGS-YSNLLRIFSHGVGS------AGGITVEAGKNENR  417 (487)
Q Consensus       348 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~-~l~sg~-~dg~i~iwd~~~~~------~~~~~~~~~~~~v~  417 (487)
                      +..+.. ...+-+.             ..+. ++|++. ..+++. .++.|.++|..+++      ....++........
T Consensus       377 ~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~  443 (567)
T 1qks_A          377 VAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL  443 (567)
T ss_dssp             EEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred             EEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence            666654 2211100             1233 578744 445553 46899999998732      23455554322112


Q ss_pred             cceEeeCCccccccccceeeec---cc----ce-ecCCCCCc-----c---ccc--------cccCCCeEEEEEcCCCCE
Q 011368          418 KPILQAAPRARRSSLSNLTRGL---YR----QA-HENSSSGH-----H---ELS--------YNLSSKLLHLAWHPTTNL  473 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~l~~g~---~~----~~-~~w~~~~~-----~---~~~--------~~~~~~v~~~~~spd~~~  473 (487)
                      .+...|  +++.     +-+..   .|    .. .+++....     .   ...        ..-.+.+.++.|+|||+.
T Consensus       444 ~i~~~p--~~~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  516 (567)
T 1qks_A          444 FIKTHP--NSQY-----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE  516 (567)
T ss_dssp             CEECCT--TCSE-----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred             EEEeCC--CCCe-----EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence            233333  3332     22211   11    12 44422211     1   011        012457889999999998


Q ss_pred             EEEec------CCeEEEEe
Q 011368          474 IACAN------GNSLFFHY  486 (487)
Q Consensus       474 la~~s------~~~~~i~~  486 (487)
                      +.++.      ++.+.|+.
T Consensus       517 ~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          517 VWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EEEEEECCTTSCCEEEEEE
T ss_pred             EEEEeecCCCCCCcEEEEE
Confidence            76652      35577764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=6.9e-14  Score=142.67  Aligned_cols=239  Identities=8%  Similarity=-0.064  Sum_probs=156.2

Q ss_pred             cCCCceeEEEeCCCCCEEEEe-c-CC----eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368          202 AHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                      +|...+..++|||||++|+.+ . +|    .|++||+.++ ......      +..  ..+..++|+|+| +.|+.++.+
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~------~~~--~~~~~~~wspDg-~~l~~~~~~  191 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDV------LER--VKFSCMAWTHDG-KGMFYNAYP  191 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEE------EEE--ECSCCEEECTTS-SEEEEEECC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCccc------ccC--cccceEEEEeCC-CEEEEEEEC
Confidence            455568899999999999886 4 33    8999999844 333221      111  124678999999 889888877


Q ss_pred             Ce----------------EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe------C
Q 011368          276 GF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------Y  333 (487)
Q Consensus       276 g~----------------i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~------d  333 (487)
                      +.                |.+|++.++.....  ..+..           ..|...+..+.|+|||++|+...      +
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  258 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPV  258 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccce--EEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence            65                99999987652111  22222           11234578899999999988653      3


Q ss_pred             CeEEEEeCCC------CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC----CcEEEEEeCCCC
Q 011368          334 MNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS  403 (487)
Q Consensus       334 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d----g~i~iwd~~~~~  403 (487)
                      ..|++||+.+      .......+..+....                ...|+|+|+.|+..+..    +.|.+||+.++.
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            6899999874      222344555444322                34588999888766543    369999998764


Q ss_pred             c-eeEEEeccCC--ccccceEeeCCccccccccceeeecccce-ecC--C--CCCccccccccCCCeEEEEEcCCCCEEE
Q 011368          404 A-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S--SSGHHELSYNLSSKLLHLAWHPTTNLIA  475 (487)
Q Consensus       404 ~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~--~~~~~~~~~~~~~~v~~~~~spd~~~la  475 (487)
                      . ....+..|..  .+..+.+.+  ++.+     +++...++. ++|  .  .++.......+...|..++++|+++.|+
T Consensus       323 ~~~~~~l~~~~~~~~~~~~~~~~--~~~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          323 ESKWKVLVPEHEKDVLEWVACVR--SNFL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEET--TTEE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             cccceeccCCCCCCeEEEEEEEc--CCEE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            2 2345555544  566666663  4555     777777876 666  3  3433344444567788999999998776


Q ss_pred             Eec-C----CeEEEEe
Q 011368          476 CAN-G----NSLFFHY  486 (487)
Q Consensus       476 ~~s-~----~~~~i~~  486 (487)
                      ... +    ..+|+|.
T Consensus       396 ~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEECSSCCCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEE
Confidence            442 1    3477775

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=2.2e-13  Score=126.32  Aligned_cols=240  Identities=13%  Similarity=0.095  Sum_probs=149.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe---------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCC
Q 011368           31 DVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (487)
                      ....+..+++  ||++++...         .++.|.+|++.+++.                            ..+    
T Consensus        13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l----   58 (347)
T 2gop_A           13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI----   58 (347)
T ss_dssp             CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE----
T ss_pred             eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc----
Confidence            3456888888  898887653         256788888876642                            111    


Q ss_pred             cccccccccccccceeEEEEEecCCCcEEEEEeCC---C--cEEEEEccccceeEeeecCCCCceeeeeccccccccccc
Q 011368          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (487)
Q Consensus       102 ~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (487)
                                  ..+..++|  +|+|++|+.++.+   +  .|.+|++.+++...+                        
T Consensus        59 ------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l------------------------  100 (347)
T 2gop_A           59 ------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI------------------------  100 (347)
T ss_dssp             ------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE------------------------
T ss_pred             ------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEE------------------------
Confidence                        23678899  6899999887643   3  377778877765433                        


Q ss_pred             cCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------------------------CeEE
Q 011368          177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------------------------LRIN  228 (487)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------------------------~~i~  228 (487)
                                              ..+.. +..++|+|||+.|+.+ .+                           ..|+
T Consensus       101 ------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (347)
T 2gop_A          101 ------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW  155 (347)
T ss_dssp             ------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred             ------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence                                    12223 8899999999988887 43                           5788


Q ss_pred             EEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC-------eEEEEEccCCccccccceeeccccc
Q 011368          229 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAE  301 (487)
Q Consensus       229 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~h~~  301 (487)
                      +||+.+ +.....+       .. . .+..+.|+|+|  +++++..++       ...||.+.+++.     +.+..   
T Consensus       156 ~~d~~~-~~~~~~l-------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~l~~---  215 (347)
T 2gop_A          156 IFDTES-EEVIEEF-------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EKMFE---  215 (347)
T ss_dssp             EEETTT-TEEEEEE-------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EEEEE---
T ss_pred             EEECCC-CeEEeee-------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EEecc---
Confidence            999984 4331222       11 2 56789999997  566665432       345554444331     22222   


Q ss_pred             ccCccccccccccceeEEEEcCCCCEEEEEe-C--------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcce
Q 011368          302 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  372 (487)
Q Consensus       302 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (487)
                                + ..+..+  +|||++|+.++ +        ..|++||  + ++.......+...+              
T Consensus       216 ----------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~--------------  265 (347)
T 2gop_A          216 ----------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGV--------------  265 (347)
T ss_dssp             ----------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEE--------------
T ss_pred             ----------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCccc--------------
Confidence                      1 233443  99999887654 2        3688888  3 44443333333322              


Q ss_pred             eeE-EEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          373 KFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       373 ~~~-~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                       .. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.+++
T Consensus       266 -~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          266 -GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             -EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS
T ss_pred             -CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC
Confidence             34 8899 88 88999999999999 8854 22 23333344455555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=2.3e-13  Score=121.31  Aligned_cols=238  Identities=9%  Similarity=0.024  Sum_probs=158.5

Q ss_pred             cEEEEEEcCCCCEEE-EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ...+++++++|++++ +...++.|.+|+..+....                           .....+.           
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~-----------   66 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL-----------   66 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence            688999999999777 5467889999986544320                           0011121           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       ..+.++++  .+++.++++.. ++.|.+||..+......                                        
T Consensus        67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~----------------------------------------  102 (270)
T 1rwi_B           67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL----------------------------------------  102 (270)
T ss_dssp             -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC----------------------------------------
T ss_pred             -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee----------------------------------------
Confidence             45778898  57787666655 88999999876543221                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             .......+.+++++++|+++++. .++.|.+|+..+..... .       .......+.+++++|+| +++++
T Consensus       103 -------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~-------~~~~~~~p~~i~~~~~g-~l~v~  166 (270)
T 1rwi_B          103 -------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-L-------PFTGLNDPDGVAVDNSG-NVYVT  166 (270)
T ss_dssp             -------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-C-------CCCSCCSCCCEEECTTC-CEEEE
T ss_pred             -------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-e-------ccccCCCceeEEEeCCC-CEEEE
Confidence                   01223567899999999988887 88999999765322211 0       11222356789999999 87777


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      ...++.|.+||.......    .....             +...+..++++++|.++++.. ++.|.+||... ... ..
T Consensus       167 ~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~-~~  227 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNNQV----VLPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTS-TV  227 (270)
T ss_dssp             EGGGTEEEEECTTTCCEE----ECCCS-------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCC-EE
T ss_pred             ECCCCEEEEEecCCCceE----eeccc-------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCC-Ccc-ee
Confidence            777889999998765422    11111             124678999999997666664 48999999864 322 22


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ......              ..+.+++++++|+++++...++.|+++++...
T Consensus       228 ~~~~~~--------------~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          228 LPFTGL--------------NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCCCSC--------------SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             eccCCC--------------CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            211110              01258999999998888899999999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=5.7e-14  Score=142.84  Aligned_cols=248  Identities=11%  Similarity=-0.010  Sum_probs=154.9

Q ss_pred             ccCcEEEEEEcCCCCEEEE-----EecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      |...+.+++|||||++||.     |+.+..|++||+.+++..                           .  ..+...  
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~--  167 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG--  167 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence            4447999999999999984     444568999999888631                           0  111100  


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCc-------------EEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                              .....++|  +|||+.|+.++.|..             |++|++.++......                   
T Consensus       168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l-------------------  218 (695)
T 2bkl_A          168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV-------------------  218 (695)
T ss_dssp             --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE-------------------
T ss_pred             --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE-------------------
Confidence                    11267899  689999999988776             999999876521100                   


Q ss_pred             cccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-cCC----eEEEEEccCCCceeEEeecCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKP  246 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~d~----~i~iwd~~~~~~~~~~~~~~~  246 (487)
                                               .+ ...+...+..+.|+|||++|+.+ .++    .|++|+.. .+....+     
T Consensus       219 -------------------------v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~~~~~l-----  267 (695)
T 2bkl_A          219 -------------------------VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-EKDFRLL-----  267 (695)
T ss_dssp             -------------------------EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-CSSCEEE-----
T ss_pred             -------------------------EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-CCceEEe-----
Confidence                                     00 13455678899999999999886 554    66666554 2232222     


Q ss_pred             CCCCCCCCcEEEEEEecCCCCEEEEEeC----CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          247 SNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                         ..+...+....+ ++| . ++..+.    ++.|.+||+.++...  ..+.+..|           .....+..++|+
T Consensus       268 ---~~~~~~~~~~~~-~~g-~-l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~-----------~~~~~l~~~~~~  328 (695)
T 2bkl_A          268 ---VKGVGAKYEVHA-WKD-R-FYVLTDEGAPRQRVFEVDPAKPARA--SWKEIVPE-----------DSSASLLSVSIV  328 (695)
T ss_dssp             ---EECSSCCEEEEE-ETT-E-EEEEECTTCTTCEEEEEBTTBCSGG--GCEEEECC-----------CSSCEEEEEEEE
T ss_pred             ---ecCCCceEEEEe-cCC-c-EEEEECCCCCCCEEEEEeCCCCCcc--CCeEEecC-----------CCCCeEEEEEEE
Confidence               233344555556 777 5 444443    578999998775420  00122211           002457788888


Q ss_pred             CCCCEEEEEe-CCeEEEEeCCCCCceeeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEE----EEcCCCcEEE
Q 011368          323 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA----TGSYSNLLRI  396 (487)
Q Consensus       323 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~----sg~~dg~i~i  396 (487)
                       ++.++++.. ++..++|.+...+.....+..+ ...               +..++++|+++.|+    +....++|++
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA---------------ASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE---------------ECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE---------------EEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence             566666654 5777777654334545555443 221               13678889998777    3334578999


Q ss_pred             EEeCCCCc
Q 011368          397 FSHGVGSA  404 (487)
Q Consensus       397 wd~~~~~~  404 (487)
                      ||+.+++.
T Consensus       393 ~d~~~g~~  400 (695)
T 2bkl_A          393 TSVSTGKS  400 (695)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCcE
Confidence            99988753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=3.7e-13  Score=121.87  Aligned_cols=195  Identities=11%  Similarity=0.056  Sum_probs=129.2

Q ss_pred             cceeEEEEEecCCCc-EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ....+++|.  ++++ +++++..++.|..|+..++ ....                                        
T Consensus        28 ~~~eg~~~d--~~g~~l~~~~~~~~~i~~~~~~~~-~~~~----------------------------------------   64 (296)
T 3e5z_A           28 TWTEGPVYV--PARSAVIFSDVRQNRTWAWSDDGQ-LSPE----------------------------------------   64 (296)
T ss_dssp             SSEEEEEEE--GGGTEEEEEEGGGTEEEEEETTSC-EEEE----------------------------------------
T ss_pred             ccccCCeEe--CCCCEEEEEeCCCCEEEEEECCCC-eEEE----------------------------------------
Confidence            557899994  6777 7778888999999999877 3322                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                              ..+...+.+++++|+|+++++. .++.|.+||..++. ...+....   .......+..++++|+| .++++
T Consensus        65 --------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~vt  131 (296)
T 3e5z_A           65 --------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-WESIADSF---EGKKLNSPNDVCLAPDG-SLWFS  131 (296)
T ss_dssp             --------ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-EEEEECEE---TTEECCCCCCEEECTTS-CEEEE
T ss_pred             --------ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-EEEEeecc---CCCCCCCCCCEEECCCC-CEEEE
Confidence                    3455678999999999988887 77999999996443 32221100   01112346779999999 88877


Q ss_pred             EeC-----------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C
Q 011368          272 SSS-----------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  333 (487)
Q Consensus       272 ~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d  333 (487)
                      .+.                 .+.|..++.. ++.     ..+..             +......++|+|+|+.+++.. +
T Consensus       132 d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~-------------~~~~~~gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          132 DPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPIR-------------DRVKPNGLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             ECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEEC-------------CCSSEEEEEECTTSCEEEEETTT
T ss_pred             CCccccccccccccccccCCCcEEEEECCC-CCE-----EEeec-------------CCCCCccEEECCCCCEEEEeCCC
Confidence            321                 2455555544 321     22222             134568899999999985554 3


Q ss_pred             CeEEEEeCCCCCce---eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          334 MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       334 ~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +.|++|++...+..   ...+..+...               +..++++++|+++++.  ++.|.+|+..
T Consensus       193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~---------------p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          193 NATHRYCLNARGETEYQGVHFTVEPGK---------------TDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             TEEEEEEECSSSCEEEEEEEECCSSSC---------------CCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             CeEEEEEECCCCcCcCCCeEeeCCCCC---------------CCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            89999998632433   2223111111               1379999999877666  7889999976

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.62  E-value=1.5e-12  Score=119.93  Aligned_cols=245  Identities=11%  Similarity=0.105  Sum_probs=155.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      +...+.+++|+|+|++++++..++.|.+||.++++.                           ......+.         
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---------------------------~~~~~~~~---------   86 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------KRPFVSHK---------   86 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------EEEEECSS---------
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------EEEeeCCC---------
Confidence            445678999999999888888889999999876643                           11121333         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCC----CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                         ..+.+++|  +++++++++...+    +.|.+||..++.......                                
T Consensus        87 ---~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------------  129 (333)
T 2dg1_A           87 ---ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE--------------------------------  129 (333)
T ss_dssp             ---SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC--------------------------------
T ss_pred             ---CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc--------------------------------
Confidence               66899999  6788877777666    689999988776442210                                


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                                   ...+...+.+++++|+|+++++. .      .+.|..++... +....+        ......+..+
T Consensus       130 -------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~~~~~~--------~~~~~~~~~i  187 (333)
T 2dg1_A          130 -------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPI--------IQNISVANGI  187 (333)
T ss_dssp             -------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEE--------EEEESSEEEE
T ss_pred             -------------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-CEEEEe--------ecCCCcccce
Confidence                         01234568899999999888876 4      24555555542 222221        1122347889


Q ss_pred             EEecCCCCEEE-EEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeE
Q 011368          260 EFHPIYCNLLA-YSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  336 (487)
Q Consensus       260 ~~~p~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i  336 (487)
                      +|+|++ +.|+ +.+.++.|.+||+.. +...    ..+....     ...+.++ ..+..++++++|+++++.. ++.|
T Consensus       188 ~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~-----~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          188 ALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATI-----PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             EECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEE-----EEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             EECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceE-----EEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence            999998 7554 445678999999964 2211    1111000     0000111 3578899999999877765 4899


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      .+||..  ++.+..+..+....         .....+.+++|+||++.|+.++.++
T Consensus       257 ~~~d~~--g~~~~~~~~~~~~~---------g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          257 LVFNKR--GYPIGQILIPGRDE---------GHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEECTT--SCEEEEEECTTGGG---------TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEECCC--CCEEEEEEcCCCcc---------ccccCcceEEECCCCCEEEEEeCcc
Confidence            999984  55666665432200         0000114899999987777666553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=1.1e-13  Score=140.79  Aligned_cols=238  Identities=6%  Similarity=-0.060  Sum_probs=147.9

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          201 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                      .+|...+..++|||||++|+.+      .+..|++||+.++.....      ..+....  ...++|+|+| +.|+.++.
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~~--~~~~~wspDg-~~l~~~~~  187 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGGK--YATPKWTPDS-KGFYYEWL  187 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCCT--TCCCEECTTS-SEEEEEEC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCccc--ccceEEecCC-CEEEEEEe
Confidence            3566678999999999999853      346899999995543100      0111111  1578999999 89999888


Q ss_pred             CCe-------------EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CC----eE
Q 011368          275 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----NL  336 (487)
Q Consensus       275 dg~-------------i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~----~i  336 (487)
                      +..             |++|++.++.....  ..+..           .++...+..+.|+|||++|+... ++    .|
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l  254 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV  254 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence            765             99999988652211  22222           12345788999999999988753 34    67


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc---CCCcEEEEEeCCCCce-eEEEecc
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG  412 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~---~dg~i~iwd~~~~~~~-~~~~~~~  412 (487)
                      ++|+... + ....+..+....               ....+ ++|++++...   .++.|.+||+.+++.. ...+-.+
T Consensus       255 ~~~~~~~-~-~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~  316 (695)
T 2bkl_A          255 YWKRPGE-K-DFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE  316 (695)
T ss_dssp             EEECTTC-S-SCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred             EEEcCCC-C-ceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence            7776543 3 334444433321               24555 5666444444   2578999999876431 2333333


Q ss_pred             --CCccccceEeeCCccccccccceeeecccce-ecC--C-CCCcccccccc-CCCeEEEEEcCCCCEEEEecC-----C
Q 011368          413 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNL-SSKLLHLAWHPTTNLIACANG-----N  480 (487)
Q Consensus       413 --~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~-~~~~~~~~~~~-~~~v~~~~~spd~~~la~~s~-----~  480 (487)
                        ...+..+.+.   ++.+     +++...++. ++|  . .++.......+ ...|..++++||++.|+....     .
T Consensus       317 ~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          317 DSSASLLSVSIV---GGHL-----SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             CSSCEEEEEEEE---TTEE-----EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence              3445555655   4455     788888888 888  3 23222222222 556778899999987774331     2


Q ss_pred             eEEEEe
Q 011368          481 SLFFHY  486 (487)
Q Consensus       481 ~~~i~~  486 (487)
                      .+|+|+
T Consensus       389 ~v~~~d  394 (695)
T 2bkl_A          389 QIYKTS  394 (695)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            477775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=2.1e-14  Score=135.80  Aligned_cols=163  Identities=13%  Similarity=0.035  Sum_probs=97.8

Q ss_pred             cCCCceeEEEeCC-CCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCC--CCcEEEEEEecCCCCEEEE
Q 011368          202 AHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDL--TEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       202 ~~~~~v~~i~~s~-~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~~  271 (487)
                      .+...+..+.|+| +++.|+.. .+      ..|.+||+.. +....        +..+  ...+..++|+|+| +.|+.
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~  254 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SNVRK--------IKEHAEGESCTHEFWIPDG-SAMAY  254 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CCCEE--------SSCCCTTEEEEEEEECTTS-SCEEE
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-CceeE--------eeccCCCccccceEECCCC-CEEEE
Confidence            4556788999999 78877665 32      4688888873 32222        1122  2357889999999 77776


Q ss_pred             EeCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-------------
Q 011368          272 SSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-------------  332 (487)
Q Consensus       272 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-------------  332 (487)
                      ++.+     +.|.+||+.+++..    .....               .... +.|+| ||++++++.             
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~----~l~~~---------------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPETLENE----EVMVM---------------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             EEEETTTCCEEEEEECTTTCCEE----EEEEC---------------CSEE-EEEECSSSSEEEEEECCC----------
T ss_pred             EecCCCCccceEEEEECCCCCeE----EeeeC---------------CCCC-CCccCCCCceEEEecCCcceeecccccc
Confidence            6543     45999999887532    11111               1123 88999 999888642             


Q ss_pred             ----CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeC
Q 011368          333 ----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  400 (487)
Q Consensus       333 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~  400 (487)
                          +..|++||+.+ +.. ..+..+......    ...+....+..++|+|||+.|+.++. ++...||.+.
T Consensus       315 ~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          315 NIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCcEEEEeccc-Cce-EEccCCCCcccc----ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                27899999975 443 334333321000    00000000136889999998887664 4555555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=2.4e-13  Score=126.04  Aligned_cols=231  Identities=9%  Similarity=0.081  Sum_probs=144.2

Q ss_pred             CcEEEEEEcCCCCEEEEEecC---Cc--EEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+.+++|||||++||.++.+   +.  |.+|++.+++.                            ..+..+.      
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------  104 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------  104 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence            468889999999999987754   34  66667665532                            1122222      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCC---------------------------CcEEEEEccccce-eEeeecCCCC
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTND---------------------------KTIKLWKVRDQKV-KKIKEMDHFP  159 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~-~~~~~~~~~~  159 (487)
                            . +..++|  +|+|+.|+.++.+                           ..|.+||+.+++. ..+       
T Consensus       105 ------~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-------  168 (347)
T 2gop_A          105 ------N-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-------  168 (347)
T ss_dssp             ------E-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE-------
T ss_pred             ------C-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-------
Confidence                  4 888999  6899988887643                           4577777766654 221       


Q ss_pred             ceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC------C-eEEEEE
Q 011368          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWN  231 (487)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d------~-~i~iwd  231 (487)
                                                               .. . .+..++|+|+| +++++ .+      . ...+|.
T Consensus       169 -----------------------------------------~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~  204 (347)
T 2gop_A          169 -----------------------------------------EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI  204 (347)
T ss_dssp             -----------------------------------------EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred             -----------------------------------------cC-C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence                                                     22 2 67889999999 77776 43      2 445555


Q ss_pred             ccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--------CeEEEEEccCCccccccceeeccccccc
Q 011368          232 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESH  303 (487)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~h~~~~  303 (487)
                      ++ .+....+        ..+ ..+..+  +|+| +.|+.++.+        ..|.+||  +++..    .....     
T Consensus       205 ~d-~~~~~~l--------~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~-----  260 (347)
T 2gop_A          205 WE-DGKEEKM--------FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDE-----  260 (347)
T ss_dssp             EE-TTEEEEE--------EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTT-----
T ss_pred             eC-CCceEEe--------ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----ecccc-----
Confidence            55 4443332        122 344444  9999 878777644        3677777  43321    22222     


Q ss_pred             CccccccccccceeE-EEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCC
Q 011368          304 GSKSFFTEIIASISD-IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  381 (487)
Q Consensus       304 ~~~~~~~~~~~~v~~-v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  381 (487)
                              +...+.. +.|+ ++ +++++. ++.++|| +.. +.....+. +...               +.+++|+| 
T Consensus       261 --------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~~~~~~-~~~~---------------v~~~~~s~-  311 (347)
T 2gop_A          261 --------VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEIKPIAK-GRHW---------------IMGFDVDE-  311 (347)
T ss_dssp             --------CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSEEEEEC-SSSE---------------EEEEEESS-
T ss_pred             --------CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-CceEEEec-CCCe---------------EEeeeeeC-
Confidence                    2456776 8999 88 777764 5899999 873 55433333 2322               25899999 


Q ss_pred             CCEEEEEcCCCcE-EEEEeCCCCceeEEEeccCC
Q 011368          382 GLHFATGSYSNLL-RIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       382 ~~~l~sg~~dg~i-~iwd~~~~~~~~~~~~~~~~  414 (487)
                       .++++++.++.. .||.+. ++  ...+..|..
T Consensus       312 -~~~~~~~~~~~~~~l~~~~-g~--~~~lt~~n~  341 (347)
T 2gop_A          312 -IVVYLKETATRLRELFTWD-GE--EKQLTDYND  341 (347)
T ss_dssp             -SEEEEEECSSSCCEEEEES-SS--EEECCCTTS
T ss_pred             -cEEEEEcCCCChHHheEeC-Cc--EEEeccccH
Confidence             677777777665 788776 42  334444443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=2.5e-12  Score=114.50  Aligned_cols=249  Identities=10%  Similarity=0.029  Sum_probs=167.7

Q ss_pred             CCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEE
Q 011368           42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  121 (487)
Q Consensus        42 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~  121 (487)
                      ..+++|++++.++.|.+||.++++.                           +-.+..+..           ..+.++.+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~---------------------------~w~~~~~~~-----------~~~~~~~~   44 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEI---------------------------VWEYPLEKG-----------WECNSVAA   44 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEE---------------------------EEEEECCTT-----------CCCCEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeE---------------------------EEEeCCCcc-----------CCCcCeEE
Confidence            3568899999999999999877764                           244444320           24788888


Q ss_pred             EecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecc
Q 011368          122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPH  201 (487)
Q Consensus       122 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (487)
                        .|+|++++  +.++.|..||. +++.+....                                              .
T Consensus        45 --~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~----------------------------------------------~   73 (276)
T 3no2_A           45 --TKAGEILF--SYSKGAKMITR-DGRELWNIA----------------------------------------------A   73 (276)
T ss_dssp             --CTTSCEEE--ECBSEEEEECT-TSCEEEEEE----------------------------------------------C
T ss_pred             --CCCCCEEE--eCCCCEEEECC-CCCEEEEEc----------------------------------------------C
Confidence              57898888  45778999998 666554321                                              1


Q ss_pred             cCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEE
Q 011368          202 AHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  279 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  279 (487)
                      .....+.++.+.++|+++++. . ++.|..+|.+  ++.+..+.... ....+......+.+.++| +++++...++.|.
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~  149 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG-NYLVPLFATSEVR  149 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-CEEEEETTTTEEE
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-CEEEEecCCCEEE
Confidence            223457888999999999997 6 7777777764  44443332221 111222234556788999 9999999999999


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeecccccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  358 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~  358 (487)
                      .||.. ++.+    ..+..              ......+...++|+.++++.+ +.|..+|..+ ++.+..+......-
T Consensus       150 ~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~  209 (276)
T 3no2_A          150 EIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-NRIVRRVNANDIEG  209 (276)
T ss_dssp             EECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-CCEEEEEEGGGSBS
T ss_pred             EECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-CcEEEEecCCCCCC
Confidence            99988 7644    44443              134566788899999998765 7899999987 88888887443110


Q ss_pred             cccccccCCCCcceeeEEEEcCCCCEEEEEcCC--------CcEEEEEeCCCCceeEEEecc
Q 011368          359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~  412 (487)
                               .....+..++..++|..+++....        +..+++++...++.+.++...
T Consensus       210 ---------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~  262 (276)
T 3no2_A          210 ---------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK  262 (276)
T ss_dssp             ---------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred             ---------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence                     012234688899999988876321        244677775444555555444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=1.6e-11  Score=120.14  Aligned_cols=309  Identities=13%  Similarity=0.058  Sum_probs=177.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEee--CCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      ...+..+.|+|||+++++++.|+.|.+||+.  +.+.                           +..+...         
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---------------------------v~~i~~G---------  239 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------------VAEIKIG---------  239 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------------EEEEECC---------
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---------------------------eEEEecC---------
Confidence            4457799999999999999999999999985  4432                           2333322         


Q ss_pred             cccccceeEEEEEec----CCCcEEEEEe-CCCcEEEEEccccceeEeeecCC----------CCceeeeeccccccccc
Q 011368          110 LEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDH----------FPFVSSENTLLAEKNFM  174 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  174 (487)
                          .....++|  +    |+|+++++++ .+++|.++|..+.+.........          .+.+..+..+.....++
T Consensus       240 ----~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          240 ----SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             ----SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             ----CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence                33578888  5    5898888776 56999999988877765533211          11223332222211111


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeec-CCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KPSNMDD  251 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~  251 (487)
                      ... .... .+....+..................++.|+|++++++++  .++.|.++|+.+ ++....+.. .   ...
T Consensus       314 v~~-~~~g-~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg---~~P  387 (567)
T 1qks_A          314 VNV-KETG-KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGG---QTP  387 (567)
T ss_dssp             EEE-TTTT-EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSS---SSB
T ss_pred             EEe-cCCC-eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccC---cCC
Confidence            111 1111 111111111111111111233456788999999998775  789999999995 445554432 1   123


Q ss_pred             CCC-cEEEEEEecCCCCEEEEEe-CCCeEEEEEccCCccc---cccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368          252 LTE-VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  326 (487)
Q Consensus       252 ~~~-~v~~v~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~  326 (487)
                      |.+ .+. + ++|++...++++. .++.|.++|....+..   .+.++.+...             ...-..+..+|+++
T Consensus       388 hpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-------------g~g~~~i~~~p~~~  452 (567)
T 1qks_A          388 HPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-------------GGGSLFIKTHPNSQ  452 (567)
T ss_dssp             CCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-------------CSCCCCEECCTTCS
T ss_pred             CCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-------------CCCCEEEEeCCCCC
Confidence            432 222 2 6887525555554 4689999999873211   0111333320             12224467899999


Q ss_pred             EEEEEe--------CCeEEEEeCCCC-----CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc----
Q 011368          327 HLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS----  389 (487)
Q Consensus       327 ~l~s~~--------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~----  389 (487)
                      ++.+..        .++|.++|+.+.     ......+...+-     ..+.  +....+..+.|+|+|+++..+.    
T Consensus       453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~G~~~~~s~~~~~  525 (567)
T 1qks_A          453 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----AGIT--EGQPRVVQGEFNKDGTEVWFSVWNGK  525 (567)
T ss_dssp             EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----HTCC--SSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred             eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc-----cccC--CCCcceEeeeECCCCCEEEEEeecCC
Confidence            988754        259999999863     222233321000     0000  0001235899999999887663    


Q ss_pred             -CCCcEEEEEeCCCCceeEEEec
Q 011368          390 -YSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       390 -~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                       .++.|.|+|.++++ +...++.
T Consensus       526 ~~~~~i~v~D~~t~~-~~~~i~~  547 (567)
T 1qks_A          526 DQESALVVVDDKTLE-LKHVIKD  547 (567)
T ss_dssp             TSCCEEEEEETTTTE-EEEEECC
T ss_pred             CCCCcEEEEECCCce-EEEEeCC
Confidence             36899999999874 3555543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=5e-11  Score=107.78  Aligned_cols=237  Identities=8%  Similarity=0.031  Sum_probs=160.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...+.+++++++|++.++...++.|.+|+.. ++..                         . ..+..+.          
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~----------   61 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD----------   61 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence            3468999999999988877678899999866 3210                         0 1112222          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        ..+..+++  .+++.++++...++.|..+|.. ++.....                                      
T Consensus        62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~--------------------------------------   98 (300)
T 2qc5_A           62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYP--------------------------------------   98 (300)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred             --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEec--------------------------------------
Confidence              56888988  5778877777667889999987 5443221                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                              .......+.++++.++++++++. .++.|..+|.. +. ....      .+......+.++++++++ ++++
T Consensus        99 --------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~~~i~~d~~g-~l~v  161 (300)
T 2qc5_A           99 --------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEY------DLPNKGSYPAFITLGSDN-ALWF  161 (300)
T ss_dssp             --------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEE------ECSSTTCCEEEEEECTTS-SEEE
T ss_pred             --------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEc------cCCCCCCCceeEEECCCC-CEEE
Confidence                    12233568899999999988888 78899999887 33 2221      122234568999999999 7666


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~  349 (487)
                      +...++.|..+|. +++..     .+..           ..+...+..+++.++|.+.++... +.|.+||. . +....
T Consensus       162 ~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~  222 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE  222 (300)
T ss_dssp             EETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE
T ss_pred             EecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE
Confidence            6666789999998 44322     1211           011346789999999987776644 78999998 3 33322


Q ss_pred             e-eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          350 T-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       350 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      . +.....               .+.+++++++|++.++...++.|..|+.
T Consensus       223 ~~~~~~~~---------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          223 YDIPTPNA---------------RPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EECSSTTC---------------CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             EECCCCCC---------------CceEEEECCCCCEEEeccCCCeEEEECC
Confidence            2 111111               1258999999997777767789999997

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=2.7e-12  Score=117.80  Aligned_cols=199  Identities=13%  Similarity=-0.025  Sum_probs=132.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .....+.+   .+++++++...++.|.+||..+++.....                                        
T Consensus        44 ~~~~~i~~---~~~~lyv~~~~~~~v~viD~~t~~~~~~i----------------------------------------   80 (328)
T 3dsm_A           44 DVAQSMVI---RDGIGWIVVNNSHVIFAIDINTFKEVGRI----------------------------------------   80 (328)
T ss_dssp             SCEEEEEE---ETTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------------------
T ss_pred             ccceEEEE---ECCEEEEEEcCCCEEEEEECcccEEEEEc----------------------------------------
Confidence            34567777   24566666777899999999988765431                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                              ........++++++++.+++. .++.|.+||..+. +....+....  ..+.......+++ ..+ .++++.
T Consensus        81 --------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~--~~~~~~~p~~i~~-~~~-~lyv~~  147 (328)
T 3dsm_A           81 --------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY-EITGYIECPD--MDMESGSTEQMVQ-YGK-YVYVNC  147 (328)
T ss_dssp             --------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT-EEEEEEECTT--CCTTTCBCCCEEE-ETT-EEEEEE
T ss_pred             --------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC-eEEEEEEcCC--ccccCCCcceEEE-ECC-EEEEEc
Confidence                    123557889998888666666 7999999999844 4443332210  0111123456666 344 444444


Q ss_pred             e-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C----------CeEEEEe
Q 011368          273 S-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----------MNLKLWD  340 (487)
Q Consensus       273 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d----------~~i~iwd  340 (487)
                      . .++.|.++|+.+++..    ..+..              ......+.++|+|++++++. +          +.|.++|
T Consensus       148 ~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          148 WSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             CTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            3 4889999999987654    33333              13456788999999777753 2          6899999


Q ss_pred             CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ..+ .+....+.......              ...++++|+++.|+++..  .|.+||..+++
T Consensus       210 ~~t-~~v~~~~~~~~g~~--------------p~~la~~~d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          210 AET-FTVEKQFKFKLGDW--------------PSEVQLNGTRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             TTT-TEEEEEEECCTTCC--------------CEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred             CCC-CeEEEEEecCCCCC--------------ceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence            986 66665555322110              158999999999888765  89999998763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=1.8e-11  Score=111.54  Aligned_cols=246  Identities=11%  Similarity=0.122  Sum_probs=156.3

Q ss_pred             cEEEEEEcCCCCEEEE-------EecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEee--ecCCCccc
Q 011368           34 IVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEF  104 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~  104 (487)
                      ...+++|+++|+++++       +..++.|.+|+..+++..                         ....  ..++.   
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~---   70 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG---   70 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE---
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC---
Confidence            4679999999998888       677889999997666421                         0000  01122   


Q ss_pred             ccccccccccceeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                               ..+..+++  +++ +.++++.. .+.|.+||.. ++.... ....                          
T Consensus        71 ---------~~~~~i~~--~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~--------------------------  111 (314)
T 1pjx_A           71 ---------GIPAGCQC--DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDS--------------------------  111 (314)
T ss_dssp             ---------CCEEEEEE--CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCT--------------------------
T ss_pred             ---------CCCceEEE--ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccC--------------------------
Confidence                     56889998  567 65555443 4478899987 654322 1000                          


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------------CeEEEEEccCCCceeEEeecCC
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWNLEISDQCFNIVDMKP  246 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~  246 (487)
                                       .......+.+++++++|+++++. .+               +.|..|+..  +......    
T Consensus       112 -----------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~----  168 (314)
T 1pjx_A          112 -----------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVD----  168 (314)
T ss_dssp             -----------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEE----
T ss_pred             -----------------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCEEEec----
Confidence                             01123457899999999988887 54               566666654  3322221    


Q ss_pred             CCCCCCCCcEEEEEEe----cCCCCEEEEE-eCCCeEEEEEcc-CCccccccceeecccccccCccccccccc-cceeEE
Q 011368          247 SNMDDLTEVITSAEFH----PIYCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEII-ASISDI  319 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~----p~~~~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~v  319 (487)
                          .+......++|+    |++ +.++.+ ..++.|.+||+. .++...  ...+..          +.++. ..+..+
T Consensus       169 ----~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~----------~~~~~~~~p~~i  231 (314)
T 1pjx_A          169 ----TAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH----------IPGTHEGGADGM  231 (314)
T ss_dssp             ----EEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE----------CCCCSSCEEEEE
T ss_pred             ----cCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE----------CCCCCCCCCCce
Confidence                122346889999    998 666555 467899999987 333110  011111          11112 457889


Q ss_pred             EEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEE
Q 011368          320 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIF  397 (487)
Q Consensus       320 ~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iw  397 (487)
                      +++++|+++++.. ++.|.+||..+ ++.+..+..+...               +.+++|+|+|+.| ++...++.|..|
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~  295 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEE
Confidence            9999998888764 58999999875 5555555544221               2589999999955 455567899999


Q ss_pred             EeCCC
Q 011368          398 SHGVG  402 (487)
Q Consensus       398 d~~~~  402 (487)
                      ++...
T Consensus       296 ~~~~~  300 (314)
T 1pjx_A          296 EWQRN  300 (314)
T ss_dssp             ECSSC
T ss_pred             eCCCC
Confidence            98754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.52  E-value=9.2e-12  Score=110.85  Aligned_cols=199  Identities=11%  Similarity=0.072  Sum_probs=141.7

Q ss_pred             CCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      ..+++|++++.|+.|.+||..+++.....                                               ..+.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~-----------------------------------------------~~~~   35 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEY-----------------------------------------------PLEK   35 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEE-----------------------------------------------ECCT
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEe-----------------------------------------------CCCc
Confidence            34688999999999999999888866542                                               2222


Q ss_pred             -CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEEE
Q 011368          205 -FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVD  282 (487)
Q Consensus       205 -~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd  282 (487)
                       ..+.++.++|+|++++ +.++.|..||.. ++...+. ..      +....+.++.+.|+| +++++.+. ++.+..+|
T Consensus        36 ~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~~~W~~-~~------~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           36 GWECNSVAATKAGEILF-SYSKGAKMITRD-GRELWNI-AA------PAGCEMQTARILPDG-NALVAWCGHPSTILEVN  105 (276)
T ss_dssp             TCCCCEEEECTTSCEEE-ECBSEEEEECTT-SCEEEEE-EC------CTTCEEEEEEECTTS-CEEEEEESTTEEEEEEC
T ss_pred             cCCCcCeEECCCCCEEE-eCCCCEEEECCC-CCEEEEE-cC------CCCccccccEECCCC-CEEEEecCCCCEEEEEe
Confidence             4678999999999988 556679999983 5544432 11      122467889999999 99988887 77888887


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      . +++.+    ..+.. ..  .    ...+......+.+.++|+++++.. ++.|..||..  ++.+..+.....+    
T Consensus       106 ~-~Gk~l----~~~~~-~~--~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~----  167 (276)
T 3no2_A          106 M-KGEVL----SKTEF-ET--G----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP----  167 (276)
T ss_dssp             T-TSCEE----EEEEE-CC--S----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC----
T ss_pred             C-CCCEE----EEEec-cC--C----CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc----
Confidence            6 45433    22322 00  0    011123455667899999999885 4999999985  7888888765332    


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                                  .++...++|+.+++++.++.|..+|..+++. +..+..
T Consensus       168 ------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~  204 (276)
T 3no2_A          168 ------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRI-VRRVNA  204 (276)
T ss_dssp             ------------CEEEECTTSCEEEECBTTSEEEEECTTTCCE-EEEEEG
T ss_pred             ------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-EEEecC
Confidence                        3778889999999999888999999988844 455543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=2.4e-12  Score=131.88  Aligned_cols=244  Identities=11%  Similarity=0.060  Sum_probs=148.7

Q ss_pred             CcEEEEEEcCCCCEEEEEecC-----CcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+..++|||||++||.+..+     ..|++||+.+++..                           . ...+.      
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~---------------------------~-~~~~~------  208 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL---------------------------A-DELKW------  208 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE---------------------------E-EEEEE------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------------------------C-ccCCC------
Confidence            368899999999999887643     35999999888631                           1 11111      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCc--------------EEEEEccccceeEeeecCCCCceeeeecccccccc
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                            ..+..++|  +|| +.|+.++.++.              |++|++.++.....                     
T Consensus       209 ------~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~---------------------  258 (741)
T 1yr2_A          209 ------VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ---------------------  258 (741)
T ss_dssp             ------EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE---------------------
T ss_pred             ------ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE---------------------
Confidence                  22357889  678 88888776554              77788765542110                     


Q ss_pred             ccccCCCCcceeeeeeeeccceeeee-cccCCCceeEEEeCCCCCEEEEe-cCC-----eEEEEEccCCCce-eEEeecC
Q 011368          174 MNEHNPPSFAHGYHLEWTENMATKVY-PHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISDQC-FNIVDMK  245 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~-~d~-----~i~iwd~~~~~~~-~~~~~~~  245 (487)
                                             ..+ ...+...+..+.|+|||++|+.. .++     .|++||+.++... ...+   
T Consensus       259 -----------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l---  312 (741)
T 1yr2_A          259 -----------------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL---  312 (741)
T ss_dssp             -----------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE---
T ss_pred             -----------------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe---
Confidence                                   000 12333458899999999998886 543     8999999854211 2222   


Q ss_pred             CCCCCCCCCcEEEEEEecCCCCEEEEEeC----CCeEEEEEccCCc-cccccceeecccccccCccccccccccceeEEE
Q 011368          246 PSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIK  320 (487)
Q Consensus       246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~  320 (487)
                          ..+...+... ++|+| ..|+..+.    ++.|.+||+.++. ..   ...+..             +...+..+.
T Consensus       313 ----~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~-------------~~~~l~~~~  370 (741)
T 1yr2_A          313 ----IPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPE-------------SKDNLESVG  370 (741)
T ss_dssp             ----ECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECC-------------CSSEEEEEE
T ss_pred             ----cCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecC-------------CCCeEEEEE
Confidence                2233333444 34888 77777765    3469999987742 11   122222             234566777


Q ss_pred             EcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEE----EcCCCcEE
Q 011368          321 FANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT----GSYSNLLR  395 (487)
Q Consensus       321 ~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s----g~~dg~i~  395 (487)
                      ++ ++.++++. .++..+||.+...+.....+..+...              .+..++++|+++.|+.    ....++|+
T Consensus       371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~  435 (741)
T 1yr2_A          371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVL  435 (741)
T ss_dssp             EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence            77 45555555 45766666554224555555432111              1247889999886662    23457899


Q ss_pred             EEEeCCCC
Q 011368          396 IFSHGVGS  403 (487)
Q Consensus       396 iwd~~~~~  403 (487)
                      +||+.+++
T Consensus       436 ~~d~~tg~  443 (741)
T 1yr2_A          436 ALDPATAK  443 (741)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCc
Confidence            99998774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=5.3e-12  Score=129.29  Aligned_cols=237  Identities=9%  Similarity=-0.003  Sum_probs=142.7

Q ss_pred             cCCCceeEEEeCCCCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC
Q 011368          202 AHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                      +|...+..++|||||+.|+.+ .+     ..|++||+.++. .....      .  +...+..++|+|+  +.|+.++.+
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-~~~~~------~--~~~~~~~~~wspD--~~l~~~~~~  228 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-PLADE------L--KWVKFSGLAWLGN--DALLYSRFA  228 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-EEEEE------E--EEEESCCCEESTT--SEEEEEECC
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-CCCcc------C--CCceeccEEEECC--CEEEEEEec
Confidence            344568899999999999887 32     369999999544 33210      0  1111246889998  455555554


Q ss_pred             C--------------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----Ce
Q 011368          276 G--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MN  335 (487)
Q Consensus       276 g--------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----~~  335 (487)
                      +              .|.+|++.++....  ...+..           ..+...+..+.|||||++|+... +     ..
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSAD--QPVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNT  295 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGC--EEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhC--EEEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence            3              38889887654211  122222           11223578999999999888653 2     48


Q ss_pred             EEEEeCCCCCce-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC----CcEEEEEeCCCC-ceeEEE
Q 011368          336 LKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS-AGGITV  409 (487)
Q Consensus       336 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d----g~i~iwd~~~~~-~~~~~~  409 (487)
                      |++||+.+.... ...+..+....               ... ++|+|+.|+..+.+    +.|.+||+.++. .....+
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred             EEEEECCCCCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence            999999762112 44444433221               133 45889988877653    459999998752 333344


Q ss_pred             eccCCccccceEeeCCccccccccceeeecccce-ecC--C-CCCcccccc-ccCCCeEEEEEcCCCCEEEEec--C---
Q 011368          410 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSY-NLSSKLLHLAWHPTTNLIACAN--G---  479 (487)
Q Consensus       410 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~-~~~~~~~~~-~~~~~v~~~~~spd~~~la~~s--~---  479 (487)
                      ..+...+..+.+.   ++.+     +++...++. ++|  . .++...... .....|..++++||++.|+...  .   
T Consensus       360 ~~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P  431 (741)
T 1yr2_A          360 PESKDNLESVGIA---GNRL-----FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP  431 (741)
T ss_dssp             CCCSSEEEEEEEE---BTEE-----EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred             cCCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence            4444444444444   4445     778888887 888  3 233222222 2356788999999998766432  2   


Q ss_pred             CeEEEEe
Q 011368          480 NSLFFHY  486 (487)
Q Consensus       480 ~~~~i~~  486 (487)
                      ..+|+|+
T Consensus       432 ~~i~~~d  438 (741)
T 1yr2_A          432 ATVLALD  438 (741)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            3477775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.49  E-value=1.1e-11  Score=113.79  Aligned_cols=247  Identities=8%  Similarity=0.055  Sum_probs=156.5

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      +....+++. +++++++...++.|.+||..+++.                           +.++.. .           
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------~~~i~~-~-----------   83 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------VGRITG-F-----------   83 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEEC-C-----------
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------EEEcCC-C-----------
Confidence            346778875 355556666789999999887764                           233422 2           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       .....++++  +++.++++...++.|.+||..+++.........                                   
T Consensus        84 -~~p~~i~~~--~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-----------------------------------  125 (328)
T 3dsm_A           84 -TSPRYIHFL--SDEKAYVTQIWDYRIFIINPKTYEITGYIECPD-----------------------------------  125 (328)
T ss_dssp             -SSEEEEEEE--ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT-----------------------------------
T ss_pred             -CCCcEEEEe--CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC-----------------------------------
Confidence             457889984  566555555489999999999887654321110                                   


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             ..+.......+++ .+++++++. . ++.|.++|..+. .....+..        ......+.++|+| ++++
T Consensus       126 -------~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~--------g~~p~~i~~~~dG-~l~v  187 (328)
T 3dsm_A          126 -------MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD-KVVDELTI--------GIQPTSLVMDKYN-KMWT  187 (328)
T ss_dssp             -------CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC--------SSCBCCCEECTTS-EEEE
T ss_pred             -------ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc--------CCCccceEEcCCC-CEEE
Confidence                   0111224456667 345555554 3 899999999854 44433311        1234678899998 7666


Q ss_pred             EEeCC----------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368          271 YSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  340 (487)
Q Consensus       271 ~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd  340 (487)
                      ++..+          +.|.++|..+++..    ..+...            .......++++|+++.|.++.. .|.+||
T Consensus       188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~------------~g~~p~~la~~~d~~~lyv~~~-~v~~~d  250 (328)
T 3dsm_A          188 ITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFK------------LGDWPSEVQLNGTRDTLYWINN-DIWRMP  250 (328)
T ss_dssp             EBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECC------------TTCCCEEEEECTTSCEEEEESS-SEEEEE
T ss_pred             EECCCccCCccccCCceEEEEECCCCeEE----EEEecC------------CCCCceeEEEecCCCEEEEEcc-EEEEEE
Confidence            66554          78999999887643    233220            0125789999999999888764 899999


Q ss_pred             CCCCCceee-e-eecccccccccccccCCCCcceeeEEEEcC-CCCEEEEE----cCCCcEEEEEeCCCCceeEEEe
Q 011368          341 IRMDSTPVA-T-FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG----SYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       341 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg----~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      ..+ ++... . +.....               ....++++| ++...++.    ..++.|.+||.. + .....+.
T Consensus       251 ~~t-~~~~~~~~~~~~~~---------------~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~~i~  309 (328)
T 3dsm_A          251 VEA-DRVPVRPFLEFRDT---------------KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLIDEFY  309 (328)
T ss_dssp             TTC-SSCCSSCSBCCCSS---------------CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEEEEE
T ss_pred             CCC-CceeeeeeecCCCC---------------ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEEEEE
Confidence            976 44321 1 111000               115899999 55666665    578999999987 5 3344443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=5.1e-11  Score=106.04  Aligned_cols=197  Identities=8%  Similarity=0.020  Sum_probs=128.7

Q ss_pred             ceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          115 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ...++++  ++++.+++ +...++.|.+|+..+......                                         
T Consensus        25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-----------------------------------------   61 (270)
T 1rwi_B           25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVL-----------------------------------------   61 (270)
T ss_dssp             CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EEC-----------------------------------------
T ss_pred             CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceE-----------------------------------------
Confidence            6788999  57888776 446788999998765442211                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                            ...+...+.+++++++++++++..++.|..||... .... .+      .......+.+++++|+| .++++..
T Consensus        62 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~-~~~~-~~------~~~~~~~p~~i~~~~~g-~l~v~~~  126 (270)
T 1rwi_B           62 ------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS-NNQT-VL------PFDGLNYPEGLAVDTQG-AVYVADR  126 (270)
T ss_dssp             ------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC-SCCE-EC------CCCSCSSEEEEEECTTC-CEEEEEG
T ss_pred             ------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC-ceEe-ee------ecCCcCCCcceEECCCC-CEEEEEC
Confidence                  02233457889999999865555788999999873 3222 11      01223568999999999 8777777


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeee
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~  352 (487)
                      .++.|.+|+..+....    .....             ....+..++++++|+++++.. ++.|.+||... ........
T Consensus       127 ~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~  188 (270)
T 1rwi_B          127 GNNRVVKLAAGSKTQT----VLPFT-------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPF  188 (270)
T ss_dssp             GGTEEEEECTTCCSCE----ECCCC-------------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCC
T ss_pred             CCCEEEEEECCCceeE----eeccc-------------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeecc
Confidence            7889999976543211    10001             123578899999998766664 48999999875 33222111


Q ss_pred             cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ....               .+..++++++|.++++...++.|.+|+....
T Consensus       189 ~~~~---------------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          189 TDIT---------------APWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             SSCC---------------SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             cCCC---------------CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            1111               1258999999988887778889999997644

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=3.6e-11  Score=109.65  Aligned_cols=204  Identities=12%  Similarity=0.051  Sum_probs=130.2

Q ss_pred             cceeEEEEEecCCCcEEEE-------EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          114 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                      ....+++|  .+++.++++       ...++.|.+||..+++.......                               
T Consensus        18 ~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------------------------------   64 (314)
T 1pjx_A           18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-------------------------------   64 (314)
T ss_dssp             TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-------------------------------
T ss_pred             CCccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-------------------------------
Confidence            45688999  577877777       57788999999887765433100                               


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEecCCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                 . ..++...+.+++++++ ++++++.....|.+||.+ +. ...+ ...   ........+.+++++++
T Consensus        65 -----------~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~-~~~~~~~~---~~~~~~~~~~~i~~d~~  127 (314)
T 1pjx_A           65 -----------E-VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEGRRMQGCNDCAFDYE  127 (314)
T ss_dssp             -----------E-ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTSCBCBCCCEEEECTT
T ss_pred             -----------c-cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-EEEEEecc---CCCccccCCcCEEECCC
Confidence                       0 0224456889999999 776666654588899987 33 2221 100   00112245789999999


Q ss_pred             CCCEEEEEeCC---------------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc----CCC
Q 011368          265 YCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----NDG  325 (487)
Q Consensus       265 ~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s----~~~  325 (487)
                      | .++++...+               +.|..||.. ++..    .....              ......++++    |++
T Consensus       128 g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~~~~i~~~~~~d~dg  187 (314)
T 1pjx_A          128 G-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQFPNGIAVRHMNDGRP  187 (314)
T ss_dssp             S-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESSEEEEEEEECTTSCE
T ss_pred             C-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCCcceEEEecccCCCC
Confidence            8 777776654               567777655 3321    11111              2346788999    999


Q ss_pred             CEEEEEe--CCeEEEEeCCCCCce-----eeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEE
Q 011368          326 QHLLSRD--YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  397 (487)
Q Consensus       326 ~~l~s~~--d~~i~iwd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iw  397 (487)
                      +.|..+.  ++.|.+||+...+..     ...+..+. .               ....++++++|+++++...++.|.+|
T Consensus       188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG---------------GADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC---------------EEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC---------------CCCceEECCCCCEEEEEcCCCEEEEE
Confidence            7666553  489999997621321     11222111 1               11489999999988887788899999


Q ss_pred             EeCCC
Q 011368          398 SHGVG  402 (487)
Q Consensus       398 d~~~~  402 (487)
                      |..++
T Consensus       253 d~~~g  257 (314)
T 1pjx_A          253 GPDGG  257 (314)
T ss_dssp             CTTCB
T ss_pred             cCCCC
Confidence            98755

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=1.6e-10  Score=104.39  Aligned_cols=232  Identities=9%  Similarity=0.076  Sum_probs=148.3

Q ss_pred             cEEEEEEcCCC-CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        34 ~V~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      -.-+..|+|++ .++++...++.|..||..+++.                            ..+. ..           
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~-----------   53 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRVT-MD-----------   53 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEEE-CS-----------
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEe-CC-----------
Confidence            34578899965 4556666788999999876642                            1111 12           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       ..+.++++  .++|+++++ . ++.|.+||..+++...+.....                                   
T Consensus        54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~-----------------------------------   93 (297)
T 3g4e_A           54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN-----------------------------------   93 (297)
T ss_dssp             -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred             -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence             56889999  578885554 3 5679999998876554321100                                   


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cC---------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                              ......+++++++|+|+++++. .+         ..-.+|.+...+....+.        ........++|+
T Consensus        94 --------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~pngi~~s  157 (297)
T 3g4e_A           94 --------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--------DQVDISNGLDWS  157 (297)
T ss_dssp             --------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--------EEESBEEEEEEC
T ss_pred             --------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--------eccccccceEEc
Confidence                    1123457899999999988775 32         334666665333332221        222346789999


Q ss_pred             cCCCCEE-EEEeCCCeEEEEEcc--CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEE
Q 011368          263 PIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  338 (487)
Q Consensus       263 p~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~i  338 (487)
                      |++ +.| ++.+.++.|.+||+.  ++....  .+.+..          +..+......+++.++|++.++... +.|.+
T Consensus       158 pdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          158 LDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEGKLWVACYNGGRVIR  224 (297)
T ss_dssp             TTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred             CCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence            999 655 455567899999973  443210  111211          0112346788999999987777654 88999


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEEEcC
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  390 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~  390 (487)
                      ||..+ ++.+..+..+...+               ++++|+ ||++.|+.++.
T Consensus       225 ~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          225 LDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred             EcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence            99976 77777777653322               689998 88887665554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.43  E-value=9.7e-10  Score=99.16  Aligned_cols=239  Identities=8%  Similarity=0.010  Sum_probs=158.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...+.+++++++|+++++...++.|..|+.+ ++.                         +. ..+....          
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------------------------~~-~~~~~~~----------   98 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-------------------------KE-YTLPNPD----------   98 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------EE-EECSSTT----------
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-------------------------EE-EeCCCcC----------
Confidence            3568999999999988877768889999864 211                         00 1111122          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        ..+..+++  .+++.++++...++.|.+||. +++.....                                      
T Consensus        99 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~--------------------------------------  135 (299)
T 2z2n_A           99 --SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYE--------------------------------------  135 (299)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEE--------------------------------------
T ss_pred             --CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEec--------------------------------------
Confidence              56888998  577887777777889999998 55433221                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                              .......+..+++.++++++++. .++.|..||. ++. ....      .+......+.+++++++| .+++
T Consensus       136 --------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~------~~~~~~~~~~~i~~~~~g-~l~v  198 (299)
T 2z2n_A          136 --------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-ITEF------KIPTPASGPVGITKGNDD-ALWF  198 (299)
T ss_dssp             --------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EEEE------ECSSTTCCEEEEEECTTS-SEEE
T ss_pred             --------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-EEEe------eCCCCCCcceeEEECCCC-CEEE
Confidence                    12234568899999999888888 7899999998 333 2221      122334568899999998 7777


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~  349 (487)
                      +...++.|.+||. +++..     .+..           ..+...+..++++++|++.++. .++.|..||..  +. +.
T Consensus       199 ~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~-~~  258 (299)
T 2z2n_A          199 VEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN--NI-IE  258 (299)
T ss_dssp             EETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT--TE-EE
T ss_pred             EccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCceEEEECCC--Cc-eE
Confidence            7667889999998 55421     1211           0123568899999999876665 35899999983  33 33


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .+......             ..+.++++ ++|.++++.. .+.+..++.+++
T Consensus       259 ~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          259 EYPIQIKS-------------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEECSSSS-------------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             EEeCCCCC-------------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            33211110             01258888 8888777655 567778887755

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=7.5e-10  Score=102.94  Aligned_cols=256  Identities=10%  Similarity=0.077  Sum_probs=152.1

Q ss_pred             EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC-Ccccc
Q 011368           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (487)
                      .++|+|||++|+.+.          .++.|.+||..+.+..                           ..+.-- .+.+ 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~-  121 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF-  121 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence            899999999998886          3678999998766532                           111110 0000 


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                           ........++|  +|+|++|+.+..  ++.|.++| .+++.... .                             
T Consensus       122 -----~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i-----------------------------  164 (373)
T 2mad_H          122 -----DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL-----------------------------  164 (373)
T ss_pred             -----ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc-----------------------------
Confidence                 00012356888  689999998874  57899999 88765432 1                             


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  260 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  260 (487)
                                         ....   ++.+.|+++ .+++. .|+.+.++|. ++... ......+ ...+.........
T Consensus       165 -------------------~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~-~~~~~~p~~~~~~  219 (373)
T 2mad_H          165 -------------------SSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGA-MLTAAQNLLTQPA  219 (373)
T ss_pred             -------------------CCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEEeccc-cccCCcceeecce
Confidence                               0111   234445543 33444 8899999999 44433 2111100 0111111123356


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--------
Q 011368          261 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--------  332 (487)
Q Consensus       261 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--------  332 (487)
                      +.+++ ..++..+.++.+.+.|+..+....  ...+..........   .-.......+.++|+++.+....        
T Consensus       220 ~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~~---~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~  293 (373)
T 2mad_H          220 QANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKAD---TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             eEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCccccc---ceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence            67776 555555578899999997653210  11121100000000   00012344578999998777642        


Q ss_pred             ---CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEEc-CCCcEEEEEeCCCCce
Q 011368          333 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAG  405 (487)
Q Consensus       333 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg~-~dg~i~iwd~~~~~~~  405 (487)
                         .+.|.++|+.+ .+.+..+.....+                ..++|+|||+ .++++. .++.|.+||+.+++..
T Consensus       294 ~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          294 HAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             cCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence               15799999987 7777777654433                4899999999 777777 5899999999988553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=2.7e-10  Score=104.51  Aligned_cols=248  Identities=10%  Similarity=0.026  Sum_probs=149.9

Q ss_pred             EEEcCCCCEEEEEec-----CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        38 ~~~s~~~~~l~~g~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ....|+++.++....     ++.|.+.|..+++.                           +.++..-.           
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~-----------   79 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF-----------   79 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-----------
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC-----------
Confidence            456799988888765     67899999887754                           34443322           


Q ss_pred             ccceeEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCc
Q 011368          113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (487)
                       .+ . +++  +|+|++++.+.          .++.|.+||..+.+...........                       
T Consensus        80 -~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~-----------------------  131 (386)
T 3sjl_D           80 -LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-----------------------  131 (386)
T ss_dssp             -SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-----------------------
T ss_pred             -CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-----------------------
Confidence             33 4 888  68999887765          3678999999988765542111000                       


Q ss_pred             ceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEE
Q 011368          183 AHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                                    +   .........++++|||++++++ .  ++.|.++|+.+ .+....+..     .+      |.
T Consensus       132 --------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v-----~g------~~  182 (386)
T 3sjl_D          132 --------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDV-----PD------CY  182 (386)
T ss_dssp             --------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEEC-----CS------EE
T ss_pred             --------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEEC-----CC------cc
Confidence                          0   0012345689999999998887 4  68999999995 445544321     11      12


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccC-CccccccceeecccccccCccccccccccce-eEEEE-cCCCCEEEEEeCCeE
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKF-ANDGQHLLSRDYMNL  336 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-~~v~~-s~~~~~l~s~~d~~i  336 (487)
                      ...|.+...+++.+.||.+.+.++.. ++...    .... ...+.        ...+ ....| .++|++++...+|.|
T Consensus       183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~----~~~~-~~~~~--------~~~~~~~~~~~~~dG~~~~vs~~g~V  249 (386)
T 3sjl_D          183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTE-VFHPE--------DEFLINHPAYSQKAGRLVWPTYTGKI  249 (386)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEE----EECC-CCSCT--------TSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred             eeecCCCceeEEECCCCCEEEEECCCCCeEEE----eecc-eeccc--------cccccccceeEcCCCcEEEEeCCCEE
Confidence            23354436778888899999999876 44321    1011 00000        1112 12355 478877776666999


Q ss_pred             EEEeCCCCC-ceeeeeecc------cccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----------CCcEEEEEe
Q 011368          337 KLWDIRMDS-TPVATFKIH------EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSH  399 (487)
Q Consensus       337 ~iwd~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----------dg~i~iwd~  399 (487)
                      ++.|+.... ..+..+...      ....+        +..   ..++++++++.|+....          .+.|.+.|+
T Consensus       250 ~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--------~g~---q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~  318 (386)
T 3sjl_D          250 HQIDLSSGDAKFLPAVEALTEAERADGWRP--------GGW---QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  318 (386)
T ss_dssp             EEEECTTSSCEECCCEESSCHHHHHTTEEE--------CSS---SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEECCCCcceeecceeccccccccccccC--------CCc---ceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence            999997522 122222200      01000        000   24788999998887643          257889999


Q ss_pred             CCCCc
Q 011368          400 GVGSA  404 (487)
Q Consensus       400 ~~~~~  404 (487)
                      ++++.
T Consensus       319 ~t~kv  323 (386)
T 3sjl_D          319 KTGER  323 (386)
T ss_dssp             TTCCE
T ss_pred             CCCeE
Confidence            88744

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.40  E-value=3.4e-10  Score=106.83  Aligned_cols=271  Identities=10%  Similarity=0.046  Sum_probs=160.3

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      -.....|+|+++++++++...++.|++||.+++...                           ..... .          
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~----------  171 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F----------  171 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C----------
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C----------
Confidence            346889999999998787777889999998766431                           11221 1          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                        .... ++|  +++++.|+++..++  .|.+++..++.......                                   
T Consensus       172 --~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g-----------------------------------  211 (409)
T 3hrp_A          172 --KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG-----------------------------------  211 (409)
T ss_dssp             --CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE-----------------------------------
T ss_pred             --CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEee-----------------------------------
Confidence              2234 888  67888888887765  68888876654321100                                   


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE-E-EEEEecCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T-SAEFHPIYC  266 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~-~v~~~p~~~  266 (487)
                              .........+.+++++|++..|+.+ .++.|+.||..... . .++...  ...+....- . .++|+|++.
T Consensus       212 --------~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~-~~~~~~--~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          212 --------QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V-TLIKQL--ELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             --------ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E-EEEEEC--CCCSCCCCSSCCEEEEETTTT
T ss_pred             --------eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E-EEEecc--cccCCCCCCccccEEEeCCCC
Confidence                    0001144567889999955555557 88899999998443 2 221000  011121111 3 899999542


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccc--cccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  342 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~  342 (487)
                      .++++-..++.|+.|+.....      ..+.++........  .....-.....++++|+|+++++-. . +.|+.|++.
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence            666666678899999876531      22322110000000  0000113578999999999777755 4 899999976


Q ss_pred             CCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      . +. +..+.++.....................++++++|.++++-..++.|+.++++
T Consensus       354 ~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          354 D-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             T-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             C-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            4 44 44444431100000000000011223689999999888888888999888763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=1.6e-09  Score=97.71  Aligned_cols=220  Identities=9%  Similarity=0.099  Sum_probs=136.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .-..+..|++ .++.++++...++.|..||..++.....                                         
T Consensus        13 ~~~Egp~w~~-~~~~l~~~d~~~~~i~~~d~~~~~~~~~-----------------------------------------   50 (297)
T 3g4e_A           13 RCGESPVWEE-VSNSLLFVDIPAKKVCRWDSFTKQVQRV-----------------------------------------   50 (297)
T ss_dssp             SBEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred             ccccCCeEEC-CCCEEEEEECCCCEEEEEECCCCcEEEE-----------------------------------------
Confidence            3456788953 2455666777889999999987764321                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                              .....+.+++++++|+++++. +..|.+||.++ +....+....   .......+..++++|+| .++++..
T Consensus        51 --------~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~-g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~  116 (297)
T 3g4e_A           51 --------TMDAPVSSVALRQSGGYVATI-GTKFCALNWKE-QSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTM  116 (297)
T ss_dssp             --------ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTT-TEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEE
T ss_pred             --------eCCCceEEEEECCCCCEEEEE-CCeEEEEECCC-CcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecC
Confidence                    234568899999999955544 56899999874 3332222111   01123457899999999 7666543


Q ss_pred             CC---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC
Q 011368          274 SR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR  342 (487)
Q Consensus       274 ~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~  342 (487)
                      ..         ..-.||.+.......   .....              ....+.++|+|+++.|+.++  .+.|.+|++.
T Consensus       117 ~~~~~~~~~~~~~~~l~~~d~~g~~~---~~~~~--------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          117 AEETAPAVLERHQGALYSLFPDHHVK---KYFDQ--------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             ECCSBTTBCCTTCEEEEEECTTSCEE---EEEEE--------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             CcccccccccCCCcEEEEEECCCCEE---EEeec--------------cccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence            21         233455544321110   11111              23467899999999876654  3899999974


Q ss_pred             -CCCcee-----eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          343 -MDSTPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       343 -~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                       ..+...     ..+.....               ....++++++|++.++...++.|.+||..+++ ....+..+...+
T Consensus       180 ~~~G~~~~~~~~~~~~~~~~---------------~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~~  243 (297)
T 3g4e_A          180 LQTGQISNRRSVYKLEKEEQ---------------IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-RLQTVKLPVDKT  243 (297)
T ss_dssp             TTTCCEEEEEEEEECCGGGC---------------EEEEEEEBTTSCEEEEEETTTEEEEECTTTCC-EEEEEECSSSBE
T ss_pred             CCCCcccCcEEEEECCCCCC---------------CCCeeEECCCCCEEEEEcCCCEEEEEcCCCce-EEEEEECCCCCc
Confidence             223321     11111111               11489999999888877778889999998774 455555555556


Q ss_pred             ccceEe
Q 011368          417 RKPILQ  422 (487)
Q Consensus       417 ~~~~~~  422 (487)
                      ++++|.
T Consensus       244 t~~~f~  249 (297)
T 3g4e_A          244 TSCCFG  249 (297)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            666665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.38  E-value=3.6e-09  Score=98.36  Aligned_cols=252  Identities=11%  Similarity=-0.024  Sum_probs=142.3

Q ss_pred             EEcCCCCEEEEEec--CC---cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        39 ~~s~~~~~l~~g~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      ...|+++++++...  ..   .|.+||..+++.                           +..+..-.            
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------   67 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------   67 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence            44578887777653  22   789999887753                           23333222            


Q ss_pred             cceeEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                      .+  .+++  +||+++++.+.          .++.|.+||..+.+...........                        
T Consensus        68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------------------------  119 (373)
T 2mad_H           68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------------  119 (373)
T ss_pred             CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------------------------
Confidence            22  7888  68999988875          3678999999876654432111000                        


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEE-eecCCCCCCCCCCcEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~v  259 (487)
                                   +   ..+......+.++|||++|+++ .  ++.|.++| .+ ++.... +..     .      .++
T Consensus       120 -------------~---~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-----~------~~~  170 (373)
T 2mad_H          120 -------------R---FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-----P------TCY  170 (373)
T ss_pred             -------------c---cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-----C------ceE
Confidence                         0   0011234588999999999987 4  47899999 74 444433 211     1      135


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCE-EEEEeCCeEEE
Q 011368          260 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKL  338 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~d~~i~i  338 (487)
                      .+.|++...+++.+.||.+.++|. +++...    ....   .+    .+.+...-.....+.+++.. ++....+.+.+
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~----~~~~---~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~v  238 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG----AGLV---GA----MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ  238 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEE----EEec---cc----cccCCcceeecceeEecCCEEEEEcCCceEEE
Confidence            566776567777888999999999 765331    1110   00    00000111223456666544 44444589999


Q ss_pred             EeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----------CCcEEEEEeCCCC
Q 011368          339 WDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSHGVGS  403 (487)
Q Consensus       339 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----------dg~i~iwd~~~~~  403 (487)
                      .|+.... ..+..+.........  .......   ...+.++||++.|+++..          ++.|.++|+.+++
T Consensus       239 id~~~~~~~v~~~~~~~~~~~~~--~~~~p~g---~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~  309 (373)
T 2mad_H          239 ADISAAGATNKAPIDALSGGRKA--DTWRPGG---WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ  309 (373)
T ss_pred             EeccCCcceEeeeeeecCCcccc--cceecCc---eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence            9986422 122222211100000  0000000   124788999888877643          3579999988773

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=5.3e-10  Score=101.39  Aligned_cols=233  Identities=9%  Similarity=-0.003  Sum_probs=149.4

Q ss_pred             ccccCcEEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..........+|+|+|+ +++++..++.|..|+. +++                            ...+..+.      
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~----------------------------~~~~~~~~------   85 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT----------------------------VDVLLDAT------   85 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC----------------------------EEEEEESC------
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC----------------------------EEEEeCCC------
Confidence            33455677899999998 5666667889999986 332                            12233333      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..+..+++  +++|+++++...++.|.+|+.. ++...+...                                
T Consensus        86 ------~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~--------------------------------  124 (305)
T 3dr2_A           86 ------AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR--------------------------------  124 (305)
T ss_dssp             ------SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECE--------------------------------
T ss_pred             ------CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEec--------------------------------
Confidence                  56889999  6788876666666889999976 543322100                                


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEE----e-c-------------CCeEEEEEccCCCceeEEeecCCCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s----~-~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                 ........++++++.|+|+++++    | .             .+.|..+|..++ ....+        
T Consensus       125 -----------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~~--------  184 (305)
T 3dr2_A          125 -----------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRM--------  184 (305)
T ss_dssp             -----------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEEE--------
T ss_pred             -----------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEEE--------
Confidence                       00111244678999999998886    3 2             245666666533 22221        


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCC------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                      . .......++|+|++ +.|+.+...      +.|.+|++..+. +. ..+.+..            ........+++.+
T Consensus       185 ~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-~~~~~~~------------~~~~~pdgi~~d~  248 (305)
T 3dr2_A          185 A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LH-DRRHFAS------------VPDGLPDGFCVDR  248 (305)
T ss_dssp             E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EE-EEEEEEC------------CSSSCCCSEEECT
T ss_pred             e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-cc-CCeEEEE------------CCCCCCCeEEECC
Confidence            1 22346789999999 877777665      789999987654 11 0112211            0123456789999


Q ss_pred             CCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          324 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       324 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      +|++.++. .+.|.+|+..  ++.+..+..+...                ..++|+|+++.|..++.++
T Consensus       249 ~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          249 GGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             TSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEETTE
T ss_pred             CCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcCCe
Confidence            99965554 4569999984  6667666655432                4899999998888877764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=1e-11  Score=114.51  Aligned_cols=189  Identities=10%  Similarity=0.072  Sum_probs=127.7

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..++.+++++...++++|+.+ .+++|+++....         .+.....       +             |......++
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~---------~~~~~~~-------~-------------~~~~~~~~l   87 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRD---------HITSDST-------P-------------LTFKWEKEI   87 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHH---------HHHSSSC-------C-------------CCCSEEEEC
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhh---------hhccccc-------c-------------ccceEEeeC
Confidence            369999999999999999987 466799764421         0000000       0             111111222


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      .. |+.|+|    ++.+|+++ .++.|++||+.+......                                        
T Consensus        88 p~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~----------------------------------------  121 (388)
T 1xip_A           88 PD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRT----------------------------------------  121 (388)
T ss_dssp             TT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEE----------------------------------------
T ss_pred             CC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCc----------------------------------------
Confidence            26 999999    67888888 889999999987542221                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             ...|...+.++.+.+..  ++++ .||.|.+||+.... ...           +...|+|++|+|+|   ++.
T Consensus       122 -------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~-~~~-----------~~~~Vs~v~WSpkG---~~v  177 (388)
T 1xip_A          122 -------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS-TKQ-----------LAQNVTSFDVTNSQ---LAV  177 (388)
T ss_dssp             -------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC-EEE-----------EEESEEEEEECSSE---EEE
T ss_pred             -------cceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc-ccc-----------ccCCceEEEEcCCc---eEE
Confidence                   13455567787776543  7777 99999999998443 222           33579999999998   678


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCcccccc---ccccceeEEEEcCCCCEEEE
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT---EIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~s  330 (487)
                      |..||.+++|+...+....  .+.+..      + ..+.   +|...|.++.|.+++.++++
T Consensus       178 g~~dg~i~~~~~~~~~~~~--k~~I~~------P-p~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEK--QFEFSL------P-SELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEE--EEEECC------C-HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccc--cceecC------C-cccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999999999888765210  022211      0 0011   25678999999999999986

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.35  E-value=1.1e-10  Score=118.52  Aligned_cols=245  Identities=13%  Similarity=0.109  Sum_probs=148.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe-----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      |...+..++|||||++||.+.     ....|++||+.+++..                          ...+.+      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~~~~~~------  174 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------ETPLKD------  174 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------EEEEEE------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------ccccCC------
Confidence            445788999999999998543     3357999999888631                          001110      


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeCCCc-------------EEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                              .....++|  + |++.|+.++.+..             |++|++.++.....                    
T Consensus       175 --------~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--------------------  223 (693)
T 3iuj_A          175 --------VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR--------------------  223 (693)
T ss_dssp             --------EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE--------------------
T ss_pred             --------ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce--------------------
Confidence                    11356789  6 8888888877743             88888876542111                    


Q ss_pred             cccccCCCCcceeeeeeeeccceeeee-ccc-CCCceeEEEeCCCCCEEEEe-c----CCeEEEEEccCCCceeEEeecC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVY-PHA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMK  245 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~i~~s~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~  245 (487)
                                              ..+ ... |...+..+.|+|||++|+.. .    ++.|+++|+..+......+   
T Consensus       224 ------------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---  276 (693)
T 3iuj_A          224 ------------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---  276 (693)
T ss_dssp             ------------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE---
T ss_pred             ------------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE---
Confidence                                    001 122 44557789999999988654 2    3589999998554333222   


Q ss_pred             CCCCCCCCCcEEEEEEecCCCCEEEEEeCC---CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          246 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       246 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                          ..+....... ++++|..+++....+   +.|..+|+.++...  ..+.+..|             ...+.  .|+
T Consensus       277 ----~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l~~~-------------~~~~~--~~s  334 (693)
T 3iuj_A          277 ----QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDLIPE-------------RQQVL--TVH  334 (693)
T ss_dssp             ----ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC-------------CSSCE--EEE
T ss_pred             ----eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEEecC-------------CCCEE--EEE
Confidence                2333444444 666662444444433   57889998876421  11223331             23343  889


Q ss_pred             CCCCEEEEEe--CC--eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC----CcE
Q 011368          323 NDGQHLLSRD--YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLL  394 (487)
Q Consensus       323 ~~~~~l~s~~--d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d----g~i  394 (487)
                      +++++|+...  ++  .|++||+.  +.....+......              .+..+.++++++.|+....+    +.+
T Consensus       335 ~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l  398 (693)
T 3iuj_A          335 SGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTL  398 (693)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred             EECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEE
Confidence            9999888653  33  78899886  3344444322211              11356778888776655444    789


Q ss_pred             EEEEeCCCC
Q 011368          395 RIFSHGVGS  403 (487)
Q Consensus       395 ~iwd~~~~~  403 (487)
                      +.||+.+++
T Consensus       399 ~~~d~~~g~  407 (693)
T 3iuj_A          399 YRFEPKSGA  407 (693)
T ss_dssp             EEECTTTCC
T ss_pred             EEEECCCCe
Confidence            999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=9e-10  Score=99.86  Aligned_cols=235  Identities=10%  Similarity=-0.008  Sum_probs=144.0

Q ss_pred             ccCCCceeEEEeCCCCC-EEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE
Q 011368          201 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  278 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  278 (487)
                      ...........|+|+++ ++++. .++.|..|+.. +. . ..+       ..+...+..++++++| +++++...++.|
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~-~~~-------~~~~~~~~gl~~d~dG-~l~v~~~~~~~v  109 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V-DVL-------LDATAFTNGNAVDAQQ-RLVHCEHGRRAI  109 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E-EEE-------EESCSCEEEEEECTTS-CEEEEETTTTEE
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E-EEE-------eCCCCccceeeECCCC-CEEEEECCCCEE
Confidence            34455677899999998 55666 88999999885 33 2 221       2244568999999999 877666667889


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE----Ee--------------CCeEEEEe
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWD  340 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s----~~--------------d~~i~iwd  340 (487)
                      .+|+.. ++.     ..+..+...        .....+..++++|+|++.++    |.              .+.|+.+|
T Consensus       110 ~~~~~~-g~~-----~~~~~~~~~--------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A          110 TRSDAD-GQA-----HLLVGRYAG--------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             EEECTT-SCE-----EEEECEETT--------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             EEECCC-CCE-----EEEEeccCC--------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence            999976 432     222110000        00235678999999998886    32              14577777


Q ss_pred             CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC------CcEEEEEeCCCCcee-EEE-ecc
Q 011368          341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGG-ITV-EAG  412 (487)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d------g~i~iwd~~~~~~~~-~~~-~~~  412 (487)
                      ..+ ++..... ....+                ..++|+||++.|+.+...      +.|++|++..+.... ..+ ...
T Consensus       176 ~~~-g~~~~~~-~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~  237 (305)
T 3dr2_A          176 PDG-SPLQRMA-DLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP  237 (305)
T ss_dssp             SSS-CCCEEEE-EESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCC-CcEEEEe-cCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC
Confidence            654 3332222 11111                489999999988777665      789999998653111 111 111


Q ss_pred             CCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          413 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       413 ~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                      ......+.+.+  ++.+     .++ ..++..+|+..............+..++|+|+++.|.+++.+++|.+.
T Consensus       238 ~~~pdgi~~d~--~G~l-----wv~-~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          238 DGLPDGFCVDR--GGWL-----WSS-SGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             SSCCCSEEECT--TSCE-----EEC-CSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             CCCCCeEEECC--CCCE-----EEe-cCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            22223444443  4443     333 344446664433333333333368899999999999998888888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.30  E-value=1.1e-08  Score=92.30  Aligned_cols=236  Identities=8%  Similarity=-0.013  Sum_probs=154.2

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..+.+++++++|+++++...++.|..||.. ++.                         + ...+....           
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-------------------------~-~~~~~~~~-----------  103 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-------------------------T-EYPLPQPD-----------  103 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------E-EEECSSTT-----------
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-------------------------E-EecCCCCC-----------
Confidence            568999999999988777667889999865 321                         0 01111122           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       ..+..+++  .+++.++++...++.|..++.. ++.....                                       
T Consensus       104 -~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~---------------------------------------  140 (300)
T 2qc5_A          104 -SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD---------------------------------------  140 (300)
T ss_dssp             -CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE---------------------------------------
T ss_pred             -CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc---------------------------------------
Confidence             55788998  5678877777778889999887 5443221                                       


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             +......+.++++.++++++++. .++.|..++.. +. ....      ........+.+++++++| .++++
T Consensus       141 -------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~~~i~~d~~g-~l~v~  204 (300)
T 2qc5_A          141 -------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY------PLPTNAAAPVGITSGNDG-ALWFV  204 (300)
T ss_dssp             -------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE------ECSSTTCCEEEEEECTTS-SEEEE
T ss_pred             -------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe------eCCCCCCCcceEEECCCC-CEEEE
Confidence                   12234567899999999977777 68899999984 33 2221      122334568999999998 77777


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      ....+.|.+||. +++..     .+..           ......+.+++++++|++.++.. ++.|..||..  +... .
T Consensus       205 ~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~-~  264 (300)
T 2qc5_A          205 EIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQIGRITND--NTIQ-E  264 (300)
T ss_dssp             ETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE-E
T ss_pred             ccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCeEEEECCC--CcEE-E
Confidence            767788999998 43321     1111           01134678999999998666664 4899999983  3322 2


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +......             ..+.+++++++|++.++.. . .|..++.+
T Consensus       265 ~~~~~~~-------------~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          265 YQLQTEN-------------AEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EECCSTT-------------CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             EECCccC-------------CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            2211110             0114899999998666554 4 77777653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=5.5e-09  Score=95.56  Aligned_cols=229  Identities=10%  Similarity=0.041  Sum_probs=141.5

Q ss_pred             EEEEEEcCCCC-EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           35 VSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        35 V~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      ..+.+|+|++. ++++...++.|.+|+.++++.                            ..+. ..            
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~------------   89 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP------------   89 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS------------
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC------------
Confidence            46789999754 556666788999999876532                            1111 12            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.+++|.  ++|.++++. .+ .|.+||..+++...+....                                     
T Consensus        90 ~~v~~i~~~--~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~-------------------------------------  128 (326)
T 2ghs_A           90 FMGSALAKI--SDSKQLIAS-DD-GLFLRDTATGVLTLHAELE-------------------------------------  128 (326)
T ss_dssp             SCEEEEEEE--ETTEEEEEE-TT-EEEEEETTTCCEEEEECSS-------------------------------------
T ss_pred             CcceEEEEe--CCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC-------------------------------------
Confidence            568999995  577766654 44 4999998877654331100                                     


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cC----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                            .......+++++++|+|+++++. .+    ....||.+. .+....+.        ........++|+|++ +.
T Consensus       129 ------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~--------~~~~~~~~i~~s~dg-~~  192 (326)
T 2ghs_A          129 ------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--------ADISIPNSICFSPDG-TT  192 (326)
T ss_dssp             ------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--------EEESSEEEEEECTTS-CE
T ss_pred             ------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEee--------CCCcccCCeEEcCCC-CE
Confidence                  00112458899999999987765 32    233444444 33332221        122346789999999 76


Q ss_pred             EEEE-eCCCeEEEEEcc--CC-ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          269 LAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       269 l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      ++.+ +.++.|.+||+.  ++ ....  .+.+..          +.........+++.++|.+.++.. .+.|.+||.. 
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-  259 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-  259 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-
T ss_pred             EEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-
Confidence            6555 457899999986  44 3211  011211          001124567899999998777764 4899999983 


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEEEcC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  390 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~  390 (487)
                       ++.+..+..+...               +++++|+ ++++.|++++.
T Consensus       260 -g~~~~~i~~~~~~---------------~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          260 -GNHIARYEVPGKQ---------------TTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             -CCEEEEEECSCSB---------------EEEEEEESTTSCEEEEEEB
T ss_pred             -CCEEEEEECCCCC---------------cEEEEEecCCCCEEEEEec
Confidence             5666666544322               2589998 88877755543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=4.3e-09  Score=99.27  Aligned_cols=216  Identities=10%  Similarity=0.056  Sum_probs=131.8

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .....|+|  ++++.++++...++.|++||..++....+.                                        
T Consensus       131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------------------------------------  168 (409)
T 3hrp_A          131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVH----------------------------------------  168 (409)
T ss_dssp             CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred             CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEee----------------------------------------
Confidence            46788999  578887777777899999999887655431                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l  269 (487)
                             .. ..... ++|+++++.|+++ .++  .|..++...... ...+.    .+.. ....+.+++++|++ ..|
T Consensus       169 -------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~~~g----~~~~~~~~~p~~iav~p~~-g~l  233 (409)
T 3hrp_A          169 -------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PTRIG----QLGSTFSGKIGAVALDETE-EWL  233 (409)
T ss_dssp             -------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EEEEE----ECCTTSCSCCCBCEECTTS-SEE
T ss_pred             -------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eEEee----eccchhcCCcEEEEEeCCC-CeE
Confidence                   11 22233 8999999988887 544  788888874433 22210    0111 33556889999954 455


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccc--eeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQHLLSRD--YMNLKLWDIRMDS  345 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~  345 (487)
                      +++..++.|..||..++..     ..+.. ...       .++...  ...++|+|++..|..++  .+.|+.|+...  
T Consensus       234 yv~d~~~~I~~~d~~~~~~-----~~~~~-~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--  298 (409)
T 3hrp_A          234 YFVDSNKNFGRFNVKTQEV-----TLIKQ-LEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--  298 (409)
T ss_dssp             EEECTTCEEEEEETTTCCE-----EEEEE-CCC-------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--
T ss_pred             EEEECCCcEEEEECCCCCE-----EEEec-ccc-------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--
Confidence            5577788999999987642     22211 000       000111  13899999655555543  38999999753  


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  402 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~  402 (487)
                      . +..+.++.....................++++|+|+++++-+ .++.|+.|++.++
T Consensus       299 ~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          299 E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            3 333333220000000000000011236899999999888887 8899999998766

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=4.4e-09  Score=96.20  Aligned_cols=191  Identities=13%  Similarity=0.086  Sum_probs=119.7

Q ss_pred             eeEEEEEecCC-CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          116 INRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       116 I~~v~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      ....+|+  ++ +.++++...++.|..||..+++....                                          
T Consensus        51 ~egp~~~--~~~~~l~~~d~~~~~i~~~d~~~~~~~~~------------------------------------------   86 (326)
T 2ghs_A           51 GEGPTFD--PASGTAWWFNILERELHELHLASGRKTVH------------------------------------------   86 (326)
T ss_dssp             EEEEEEE--TTTTEEEEEEGGGTEEEEEETTTTEEEEE------------------------------------------
T ss_pred             CcCCeEe--CCCCEEEEEECCCCEEEEEECCCCcEEEE------------------------------------------
Confidence            4678895  54 55666666788999999987754322                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                             .....+.+++++++|++++++.+ .|.+||..++ ....+....   .......+..++++|+| .++++...
T Consensus        87 -------~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g-~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~  153 (326)
T 2ghs_A           87 -------ALPFMGSALAKISDSKQLIASDD-GLFLRDTATG-VLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMG  153 (326)
T ss_dssp             -------ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTC-CEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEE
T ss_pred             -------ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCC-cEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCC
Confidence                   12346889999999988776644 4999998743 332222110   01112468899999999 76665432


Q ss_pred             ------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCC--CC
Q 011368          275 ------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR--MD  344 (487)
Q Consensus       275 ------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~--~~  344 (487)
                            .+.|..++  +++.     ..+..             +......++|+|+|+.|+.++  ++.|.+||+.  + 
T Consensus       154 ~~~~~~~~~l~~~~--~g~~-----~~~~~-------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-  212 (326)
T 2ghs_A          154 RKAETGAGSIYHVA--KGKV-----TKLFA-------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART-  212 (326)
T ss_dssp             TTCCTTCEEEEEEE--TTEE-----EEEEE-------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-
T ss_pred             CcCCCCceEEEEEe--CCcE-----EEeeC-------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc-
Confidence                  23455555  3332     11111             023467899999999776654  3899999985  3 


Q ss_pred             C-ce-----eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          345 S-TP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       345 ~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      + ..     +..+.....               ....++++++|.+.++...++.|.+|+.
T Consensus       213 Gl~~~~~~~~~~~~~~~~---------------~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKG---------------GMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             CCBSSCCEEEEECTTSSS---------------EEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CCcccCceEEEECCCCCC---------------CCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            3 21     111111111               1147999999988777766788999987

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.28  E-value=2.8e-09  Score=97.83  Aligned_cols=262  Identities=11%  Similarity=0.089  Sum_probs=147.9

Q ss_pred             EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .++++|||++|++++          .++.|.+||..+.+..                           ..+.-..+    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g----  130 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA----  130 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCc----
Confidence            499999999887765          3678999999877642                           22210000    


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                       +..........++|  ++||++++.+..  ++.|.++|+.+++.......                             
T Consensus       131 -~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-----------------------------  178 (386)
T 3sjl_D          131 -PRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-----------------------------  178 (386)
T ss_dssp             -CCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-----------------------------
T ss_pred             -cccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-----------------------------
Confidence             00000023456888  689999888763  68999999999886654211                             


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcE-EEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~~  262 (487)
                                      .+    + ...+....+.+++. .||++.+.++...++..... .+  .+..-...+ ....|.
T Consensus       179 ----------------~g----~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~--~~~~~~~~~~~~~~~~  234 (386)
T 3sjl_D          179 ----------------PD----C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TE--VFHPEDEFLINHPAYS  234 (386)
T ss_dssp             ----------------CS----E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CC--CCSCTTSCBCSCCEEE
T ss_pred             ----------------CC----c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cc--eeccccccccccceeE
Confidence                            01    0 01111122333333 55666666655322221110 00  011111111 123665


Q ss_pred             -cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe---------
Q 011368          263 -PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---------  332 (487)
Q Consensus       263 -p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~---------  332 (487)
                       ++| + ++..+.+|.+.+.|+.+.....  ...+..-.......   .-.......++++++++.++...         
T Consensus       235 ~~dG-~-~~~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~~~~---g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk  307 (386)
T 3sjl_D          235 QKAG-R-LVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEAERAD---GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK  307 (386)
T ss_dssp             TTTT-E-EEEEBTTSEEEEEECTTSSCEE--CCCEESSCHHHHHT---TEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred             cCCC-c-EEEEeCCCEEEEEECCCCccee--ecceeccccccccc---cccCCCcceeeECCCCCeEEEEeccccccccC
Confidence             566 4 4446678999999997654210  01111000000000   00012344577899998887642         


Q ss_pred             C--CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EEEEE-cCCCcEEEEEeCCCCceeEE
Q 011368          333 Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       333 d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~sg-~~dg~i~iwd~~~~~~~~~~  408 (487)
                      +  +.|.+.|+.+ .+.+..+......                +++++++|++ +|++. ..++.|.++|..+++. ..+
T Consensus       308 ~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~-~~~  369 (386)
T 3sjl_D          308 TASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRS  369 (386)
T ss_dssp             SCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTTEEEEEETTTCCE-EEE
T ss_pred             CCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE-EEE
Confidence            1  5799999998 8888887755432                4899999997 66664 4589999999999853 444


Q ss_pred             Ee
Q 011368          409 VE  410 (487)
Q Consensus       409 ~~  410 (487)
                      ++
T Consensus       370 i~  371 (386)
T 3sjl_D          370 VN  371 (386)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=2.9e-10  Score=104.85  Aligned_cols=190  Identities=7%  Similarity=0.034  Sum_probs=124.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe-eecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..++.+++  ++...++++|+.++ +.+|++...+.... ...+.                                   
T Consensus        38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~-----------------------------------   79 (388)
T 1xip_A           38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPL-----------------------------------   79 (388)
T ss_dssp             SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCC-----------------------------------
T ss_pred             ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccc-----------------------------------
Confidence            46899999  46778899998875 66699875431000 00000                                   


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                       ++..  ...+.. |+.++|  |++.|+++.++.|++||+.+..+...        ...+...+.++.+.+.   .++++
T Consensus        80 -~~~~--~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i~~~~p---~~av~  142 (388)
T 1xip_A           80 -TFKW--EKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQLKNVNN---TLVIL  142 (388)
T ss_dssp             -CCSE--EEECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEEEECSS---EEEEE
T ss_pred             -cceE--EeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeEEecCC---CEEEE
Confidence             0000  123556 999999  89999999889999999985543322        2345556777776643   38889


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCce--eee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP--VAT  350 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~--~~~  350 (487)
                      +.||.|.+||+.++...    .   .              ...|++++|||+| ..+...||.+++|+... ...  ..+
T Consensus       143 ~~dG~L~v~dl~~~~~~----~---~--------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~  199 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTK----Q---L--------------AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFE  199 (388)
T ss_dssp             ETTSEEEEEETTTCCEE----E---E--------------EESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEE
T ss_pred             ECCCCEEEEEccCCccc----c---c--------------cCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccce
Confidence            99999999999976532    1   1              3479999999999 44444579999998875 443  444


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEE
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  387 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  387 (487)
                      +.......    +  +.+.-..|.++.|.+++.++++
T Consensus       200 I~~Pp~~~----~--~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          200 FSLPSELE----E--LPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ECCCHHHH----T--SCTTTSEEEEEEESSSSEEEEE
T ss_pred             ecCCcccc----c--ccCCCeeEEEEEEecCCeEEEE
Confidence            53211100    0  0001123479999999999886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=1.1e-08  Score=94.22  Aligned_cols=263  Identities=8%  Similarity=0.007  Sum_probs=150.1

Q ss_pred             CcEEEEEEcCCCCEEEEEe--cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ..+..++++|+|+++++..  .++.++||.+++++..                   ..|...  ....+|.         
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-------------------~~p~~~--~~~~~~~---------   66 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-------------------PFPPQS--GNAIITF---------   66 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-------------------ESCCCC--SSCCCCC---------
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-------------------cCCCcc--cCcccce---------
Confidence            4789999999999988864  2344677777644220                   000000  0111233         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeC-----CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCccee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (487)
                         ..+..|++  .+++.++++-..     +..|.+||+.+++..........                           
T Consensus        67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~---------------------------  114 (343)
T 2qe8_A           67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP---------------------------  114 (343)
T ss_dssp             ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT---------------------------
T ss_pred             ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh---------------------------
Confidence               67899999  577776665543     57899999998875443221100                           


Q ss_pred             eeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-----cCCeEEEEEccCCCceeEEeecCCCC--------CCC-
Q 011368          186 YHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSN--------MDD-  251 (487)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~-  251 (487)
                                    ...+...+..+++++++..++.+     .++.|.+||+.+ +...+++...+..        ..+ 
T Consensus       115 --------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~~~~~~~~~~~~~~~~g~  179 (343)
T 2qe8_A          115 --------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQGYPGIAPEDIDLVIDGV  179 (343)
T ss_dssp             --------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECTTCTTTSCCSCCCEETTE
T ss_pred             --------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEecCCCcccccccceeECCE
Confidence                          01233457899999865555444     367999999984 4444443210000        000 


Q ss_pred             -------------CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc---cceeecccccccCccccccccccc
Q 011368          252 -------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIAS  315 (487)
Q Consensus       252 -------------~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~  315 (487)
                                   ....+..++|+|++ +.|+++..++. ++|.+........   ....+..        ....++...
T Consensus       180 ~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~g~  249 (343)
T 2qe8_A          180 PVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSK--------IERYSEKPI  249 (343)
T ss_dssp             ECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTT--------CEEEEECCS
T ss_pred             EEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcc--------eEecccCCC
Confidence                         11246889999999 88888877653 4444432110000   0000000        000112345


Q ss_pred             eeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368          316 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  394 (487)
Q Consensus       316 v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i  394 (487)
                      ...++++++|.++++.. .+.|.+||... ++...........              ...+++|+++++++++.+..+.+
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~--------------~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLS--------------WTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGS--------------CEEEEEECTTSCEEEEECCGGGS
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCcee--------------cCCeeEECCCCcEEEEeCccccc
Confidence            67899999998887765 49999999843 4432222211110              12589999999888887765555


Q ss_pred             EEE
Q 011368          395 RIF  397 (487)
Q Consensus       395 ~iw  397 (487)
                      .+|
T Consensus       315 ~~f  317 (343)
T 2qe8_A          315 APL  317 (343)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.23  E-value=1.8e-08  Score=93.13  Aligned_cols=265  Identities=13%  Similarity=0.122  Sum_probs=146.5

Q ss_pred             EEc--CCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           39 EFD--KTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        39 ~~s--~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      .++  +++++|+.. ..++.|.|+|+.+...                       ..+..+++..-+    ..+.... ..
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~-----------------------~p~~~k~ie~~~----~~~~~g~-s~  139 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPR-----------------------EPKIIKVIEPEE----VKKVSGY-SR  139 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTT-----------------------SCEEEEEECHHH----HHHHHCE-EE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCC-----------------------Cceeeeeechhh----cccccCC-Cc
Confidence            346  788877664 4788999999865532                       112233332000    0000000 13


Q ss_pred             eeEEEEEecCCCcEEEEEeCC------CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      -..+..  .|+| +++++..+      +.|.+.|..+.+.+......                                 
T Consensus       140 Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~---------------------------------  183 (462)
T 2ece_A          140 LHTVHC--GPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID---------------------------------  183 (462)
T ss_dssp             EEEEEE--CSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB---------------------------------
T ss_pred             ccceeE--CCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC---------------------------------
Confidence            344555  5788 66666554      78999999988766542111                                 


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEec--------------------CCeEEEEEccCCCceeEEeecCCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                 ..-...-+.+.|+|+++.++++.                    +.+|.+||+.+ ++....++..    
T Consensus       184 -----------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg----  247 (462)
T 2ece_A          184 -----------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLG----  247 (462)
T ss_dssp             -----------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESC----
T ss_pred             -----------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecC----
Confidence                       01112234688899999988883                    78999999995 4555544221    


Q ss_pred             CCCCCcEEEEEE--ecCCCCEEEEEe------CCCeEEEEEccCCccccccceeecccccccCcc------ccccccccc
Q 011368          250 DDLTEVITSAEF--HPIYCNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SFFTEIIAS  315 (487)
Q Consensus       250 ~~~~~~v~~v~~--~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~~  315 (487)
                       ........+.|  +|++ +++++++      .+++|.+|....+...  ..+.+.. ...+...      ..+.+-...
T Consensus       248 -~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi-~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          248 -EENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEI-PAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             -TTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEE-CCEECCSSCCGGGGGGTEECCC
T ss_pred             -CCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeC-CCccccccccccccccccCCCc
Confidence             11223456656  9999 7666665      4668888777654321  1111111 0000000      001111245


Q ss_pred             eeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC--ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368          316 ISDIKFANDGQHLLSRD--YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  389 (487)
Q Consensus       316 v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~  389 (487)
                      ...|.+||||++|.++.  .+.|.+||+...+  +.+..+...... .......+.........++++|||++|+++.
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            78899999999999875  3999999986322  333333322100 0000000000000014799999999999888

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.22  E-value=1e-08  Score=95.92  Aligned_cols=70  Identities=10%  Similarity=0.119  Sum_probs=56.3

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-EE
Q 011368          318 DIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HF  385 (487)
Q Consensus       318 ~v~~s~~~~~l~s~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l  385 (487)
                      .++++|+++.+++..           .+.|.+.|+.+ .+.+..+.....+                ..+.|+|||+ ++
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~l  385 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLL  385 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEE
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEE
Confidence            478999988777642           25799999998 8888888765543                4899999999 88


Q ss_pred             EEEc-CCCcEEEEEeCCCCc
Q 011368          386 ATGS-YSNLLRIFSHGVGSA  404 (487)
Q Consensus       386 ~sg~-~dg~i~iwd~~~~~~  404 (487)
                      ++.. .++.|.++|+.+++.
T Consensus       386 yv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          386 YALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EEEETTTTEEEEEETTTCCE
T ss_pred             EEEcCCCCeEEEEECCCCCE
Confidence            8887 589999999999854

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=1.7e-08  Score=93.12  Aligned_cols=225  Identities=7%  Similarity=0.074  Sum_probs=133.2

Q ss_pred             cceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      ..+..|++  +++|+.+++..  .++.++||.+.+++........                                   
T Consensus        17 ~~p~~va~--~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~-----------------------------------   59 (343)
T 2qe8_A           17 LAPGNITL--TPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS-----------------------------------   59 (343)
T ss_dssp             SCEEEEEE--CTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC-----------------------------------
T ss_pred             CCcceEEE--CCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc-----------------------------------
Confidence            35788999  67888888864  2343677776644432110000                                   


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-c-----CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                           . ....+...+..++++++++++++- .     +..|.+||+.+ ++....+.... ....+...+..++++|++
T Consensus        60 -----~-~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~-~~~~~~~~~~~v~vd~~~  131 (343)
T 2qe8_A           60 -----G-NAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPP-PITLSNSFVNDLAVDLIH  131 (343)
T ss_dssp             -----S-SCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCT-TTSCTTCCCCEEEEETTT
T ss_pred             -----c-CcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECCh-hhcccccccceEEEecCC
Confidence                 0 013456789999999999877765 4     68999999984 44444443321 112233456889999865


Q ss_pred             CCEEEEEe---CCCeEEEEEccCCccccccceeeccccc-ccCc-cccccc--------------cccceeEEEEcCCCC
Q 011368          266 CNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAE-SHGS-KSFFTE--------------IIASISDIKFANDGQ  326 (487)
Q Consensus       266 ~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~~-~~~~~~--------------~~~~v~~v~~s~~~~  326 (487)
                      ...+++..   .++.|.+||+.+++..    +.+..|.. .+.. .....+              ....+..|+|+|+|+
T Consensus       132 g~~yvtd~~~~~~~~i~v~d~~~g~~~----r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~  207 (343)
T 2qe8_A          132 NFVYISDPAPDDKAALIRVDLQTGLAA----RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE  207 (343)
T ss_dssp             TEEEEEECCSGGGCEEEEEETTTCCEE----EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred             CEEEEEcCccCCCCeEEEEECCCCCEE----EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence            14445554   5789999999877643    33333211 0000 000000              012468899999999


Q ss_pred             EEEEEeC--CeEEEEeCCC--CCc-----eeeeee--cccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368          327 HLLSRDY--MNLKLWDIRM--DST-----PVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  395 (487)
Q Consensus       327 ~l~s~~d--~~i~iwd~~~--~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~  395 (487)
                      .|+.++.  ..+..++...  ...     ....+.  ++...               ...++++++|.++++...++.|.
T Consensus       208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~l~va~~~~~~V~  272 (343)
T 2qe8_A          208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHNIYVGDLAHSAIG  272 (343)
T ss_dssp             EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCCEEEEEGGGTEEE
T ss_pred             EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCCEEEEccCCCeEE
Confidence            8887753  4555555321  010     000000  11110               03799999999999999999999


Q ss_pred             EEEeCCC
Q 011368          396 IFSHGVG  402 (487)
Q Consensus       396 iwd~~~~  402 (487)
                      +||.+++
T Consensus       273 ~~d~~~G  279 (343)
T 2qe8_A          273 VITSADR  279 (343)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9998555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=8.7e-09  Score=104.51  Aligned_cols=237  Identities=11%  Similarity=0.044  Sum_probs=142.4

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          201 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                      .++...+..++|||||++|+.+      ....|++||+.++. .+..      .+...  ....++|+ ++ +.|+.++.
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~------~~~~~--k~~~~~Ws-Dg-~~l~y~~~  193 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-PLET------PLKDV--KFSGISWL-GN-EGFFYSSY  193 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-EEEE------EEEEE--ESCCCEEE-TT-TEEEEEES
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-CCcc------ccCCc--eeccEEEe-CC-CEEEEEEe
Confidence            3456678899999999999864      22579999999554 3221      01111  12467899 99 88888877


Q ss_pred             CC-------------eEEEEEccCCccccccceeecccccccCccccccc-cccceeEEEEcCCCCEEEEE-e---C-Ce
Q 011368          275 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN  335 (487)
Q Consensus       275 dg-------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~-~---d-~~  335 (487)
                      +.             .|.+|++.++....  ..++..           .. |...+..+.|+|||++|+.. .   . +.
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  260 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR  260 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGC--EEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccc--eEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence            63             48899987754211  122332           11 23457789999999988753 2   2 58


Q ss_pred             EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CC---CcEEEEEeCCCCc-eeEEEe
Q 011368          336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YS---NLLRIFSHGVGSA-GGITVE  410 (487)
Q Consensus       336 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~d---g~i~iwd~~~~~~-~~~~~~  410 (487)
                      |+++|+.........+..+....               ... ++++|..|+..+ .+   +.|..+++.++.. ....+.
T Consensus       261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence            99999976333445555444322               133 667666655443 33   6799999987643 134555


Q ss_pred             ccCCccccceEeeCCccccccccceeee-cccce---ecCCCCCccccc--cccCCCeEEEEEcCCCCEEEEec-C----
Q 011368          411 AGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA---HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACAN-G----  479 (487)
Q Consensus       411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g-~~~~~---~~w~~~~~~~~~--~~~~~~v~~~~~spd~~~la~~s-~----  479 (487)
                      .|...+.  .+++.  +..     |+.. ..++.   .+|.........  ......+..+.++|+++.|+... +    
T Consensus       325 ~~~~~~~--~~s~~--g~~-----lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP  395 (693)
T 3iuj_A          325 PERQQVL--TVHSG--SGY-----LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP  395 (693)
T ss_dssp             CCCSSCE--EEEEE--TTE-----EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred             cCCCCEE--EEEEE--CCE-----EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC
Confidence            6655554  67763  333     4443 34443   344432222222  23345677888999998776543 2    


Q ss_pred             CeEEEEe
Q 011368          480 NSLFFHY  486 (487)
Q Consensus       480 ~~~~i~~  486 (487)
                      ..+|.|+
T Consensus       396 ~~l~~~d  402 (693)
T 3iuj_A          396 PTLYRFE  402 (693)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEE
Confidence            4577664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=1.1e-08  Score=95.57  Aligned_cols=251  Identities=10%  Similarity=0.095  Sum_probs=141.8

Q ss_pred             EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC-Ccccc
Q 011368           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (487)
                      .++++|||++|+++.          .++.|.++|..+.+..                           ..+.-- .+.  
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------------------------~~I~v~g~~r--  172 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPR--  172 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCCC--
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---------------------------EEEECCCccc--
Confidence            799999999888876          3678999998877542                           222100 000  


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCce-----eeeeccccccccccccC
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFV-----SSENTLLAEKNFMNEHN  178 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  178 (487)
                          .........++|  ++||++++.+..  ++.|.+.|..+++............+     ..+....+++.++....
T Consensus       173 ----~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          173 ----FLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             ----CCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             ----cccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence                000022355778  689999988864  57899999999887655433211000     00001112222222211


Q ss_pred             CCCcceeeeeeeeccceeeeecccCCCc-eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCcee-EEeecCCCCCCC---C
Q 011368          179 PPSFAHGYHLEWTENMATKVYPHAHDFN-INSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD---L  252 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~---~  252 (487)
                      ....... ..     .  ..+ .....+ ...+.+.+++..++.. ..+.+.+.|.......+ ..+.........   .
T Consensus       247 ~~~~v~~-~~-----~--~~~-~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          247 ADGETKV-TN-----T--EVF-HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             CTTCCEE-EE-----C--CCC-SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             CCCcEEE-Ee-----e--eee-ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence            1100000 00     0  111 111112 2245678888877776 77899999987332111 000000000000   0


Q ss_pred             CCcEEEEEEecCCCCEEEEEeC----------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc
Q 011368          253 TEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  322 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s  322 (487)
                      ......++++|++ ..+++...          ++.|.++|..+.+..    ..+..              ......+.|+
T Consensus       318 p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----~~I~v--------------g~~P~gia~s  378 (426)
T 3c75_H          318 PGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----NKIEL--------------GHEIDSINVS  378 (426)
T ss_dssp             ECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE--------------EEEECEEEEC
T ss_pred             cCCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeEE----EEEEC--------------CCCcCeEEEc
Confidence            1112236899998 66655532          357999999998765    44444              2357899999


Q ss_pred             CCCC-EEEEEe--CCeEEEEeCCCCCceeeee
Q 011368          323 NDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       323 ~~~~-~l~s~~--d~~i~iwd~~~~~~~~~~~  351 (487)
                      |||+ ++++..  ++.|.++|+.+ .+.+..+
T Consensus       379 pDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI  409 (426)
T 3c75_H          379 QDAEPLLYALSAGTQTLHIYDAAT-GEELRSV  409 (426)
T ss_dssp             CSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred             cCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence            9999 787765  59999999997 7878776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=1.8e-08  Score=92.57  Aligned_cols=77  Identities=12%  Similarity=0.043  Sum_probs=56.8

Q ss_pred             EEEcCCCCEEEEE-e-C--------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEE
Q 011368          319 IKFANDGQHLLSR-D-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FAT  387 (487)
Q Consensus       319 v~~s~~~~~l~s~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~s  387 (487)
                      ++++|+++.++.+ . .        +.+.++|+.+ .+.+..+.....+                ..++|+|||++ +++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA  331 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence            6899999887754 2 2        3566999998 7778877766543                48999999984 555


Q ss_pred             Ec-CCCcEEEEEeCCCCceeEEEeccC
Q 011368          388 GS-YSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       388 g~-~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      .. .++.|.++|+.+++ ....+....
T Consensus       332 ~~~~~~~VsVID~~t~k-vv~~I~vg~  357 (368)
T 1mda_H          332 NSAGTEVLDIYDAASDQ-DQSSVELDK  357 (368)
T ss_dssp             EETTTTEEEEEESSSCE-EEEECCCCS
T ss_pred             ccCCCCeEEEEECCCCc-EEEEEECCC
Confidence            55 58999999999984 345554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.01  E-value=2.5e-06  Score=75.33  Aligned_cols=217  Identities=11%  Similarity=-0.007  Sum_probs=128.1

Q ss_pred             cceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..+..++|.  +++ .++++-..++.|..++..++....+                                        
T Consensus        36 ~~~~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~----------------------------------------   73 (267)
T 1npe_A           36 KVIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTI----------------------------------------   73 (267)
T ss_dssp             EEEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEE----------------------------------------
T ss_pred             CcEEEEEEe--cCCCEEEEEECCCCEEEEEecCCCCcEEE----------------------------------------
Confidence            446889995  544 4445555678999999876543222                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             ..........+++++++..|+.+  ..+.|.+++.+. .....+.       .........++++|++ ..|+
T Consensus        74 -------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~-------~~~~~~P~~i~vd~~~-g~ly  137 (267)
T 1npe_A           74 -------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRRVLF-------DTGLVNPRGIVTDPVR-GNLY  137 (267)
T ss_dssp             -------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE-------CSSCSSEEEEEEETTT-TEEE
T ss_pred             -------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEEEEE-------ECCCCCccEEEEeeCC-CEEE
Confidence                   11222457889999876665554  678999999873 2222221       1112356899999965 4555


Q ss_pred             EEeC---CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368          271 YSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS  345 (487)
Q Consensus       271 ~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~  345 (487)
                      .+..   .+.|..+++.....     +.+..            ........+++++++..|..++  .+.|.++|+.. .
T Consensus       138 v~~~~~~~~~I~~~~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~  199 (267)
T 1npe_A          138 WTDWNRDNPKIETSHMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-P  199 (267)
T ss_dssp             EEECCSSSCEEEEEETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-E
T ss_pred             EEECCCCCcEEEEEecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-C
Confidence            4443   36888888764321     22211            0023578899999888777664  38999999863 3


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC-CccccceEeeC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA  424 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~  424 (487)
                      .....+.....+                ..++.. ++..+++....+.|.++|..+++. ...+.... .....+++.|.
T Consensus       200 ~~~~~~~~~~~P----------------~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~-~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          200 GRRKVLEGLQYP----------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKE-MDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEEEEECCCSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEE-EEEECCSSCCCCCCEEEECS
T ss_pred             ceEEEecCCCCc----------------eEEEEe-CCEEEEEECCCCeEEEEeCCCCCc-eEEEccccccccceeeecCc
Confidence            222222221111                366654 344444444668999999988743 44554332 23455666653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.97  E-value=2.1e-07  Score=86.93  Aligned_cols=194  Identities=10%  Similarity=0.032  Sum_probs=105.8

Q ss_pred             CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF  205 (487)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (487)
                      ++..++.++.++.|..+|..+++.........                                           .....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-------------------------------------------~~~~~  138 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-------------------------------------------EALSR  138 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSS-------------------------------------------CCCSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-------------------------------------------ceEcC
Confidence            35678888899999999999888654321110                                           00011


Q ss_pred             ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC--CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      ++    ..  +..++.+ .++.|..+|..++......- .....  ......    .... +  ..+++++.++.+..+|
T Consensus       139 p~----~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~----~~~~-~--~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          139 PV----VS--DGLVLIHTSNGQLQALNEADGAVKWTVN-LDMPSLSLRGESA----PTTA-F--GAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             CE----EE--TTEEEEECTTSEEEEEETTTCCEEEEEE-CCC-----CCCCC----CEEE-T--TEEEECCTTTEEEEEE
T ss_pred             CE----EE--CCEEEEEcCCCeEEEEECCCCcEEEEEe-CCCCceeecCCCC----cEEE-C--CEEEEEcCCCEEEEEE
Confidence            11    11  3466666 89999999998665544331 11000  000111    1222 3  4677888899999999


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      ..+++..    .....  ..+.....+............  .+..++.++ ++.+..+|.++ ++.+........     
T Consensus       205 ~~tG~~~----w~~~~--~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~-----  270 (376)
T 3q7m_A          205 MEQGQMI----WQQRI--SQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRS-GQIMWKRELGSV-----  270 (376)
T ss_dssp             TTTCCEE----EEEEC--CC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTT-CCEEEEECCCCE-----
T ss_pred             CCCCcEE----EEEec--ccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCC-CcEEeeccCCCC-----
Confidence            9988743    12211  000000000000000001111  134555554 59999999987 666655442211     


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                                  ..+..  ++..|+.++.++.|..+|..+++.
T Consensus       271 ------------~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          271 ------------NDFIV--DGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             ------------EEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred             ------------CCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence                        13333  356788888899999999999854

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.93  E-value=1.6e-05  Score=82.09  Aligned_cols=334  Identities=10%  Similarity=0.057  Sum_probs=184.0

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      |.++...++|++.+ |..++.|..|+..+++..                         ... ...+.            .
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-------------------------~~~-~~~~~------------~  215 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE-------------------------KVI-PILGT------------K  215 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE-------------------------ECC-----C------------C
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE-------------------------Eec-CCCCC------------C
Confidence            88888888887555 555545888886554321                         000 00112            5


Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .|.++...  .++. |..++.++-+.+||..+++..........+                                   
T Consensus       216 ~i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-----------------------------------  257 (795)
T 4a2l_A          216 QIQAILQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNP-----------------------------------  257 (795)
T ss_dssp             CEEEEEEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCT-----------------------------------
T ss_pred             eeEEEEEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCc-----------------------------------
Confidence            57888773  4555 445554445888998776654331100000                                   


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCC-CCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                           ..-....|.++...++|.+.+...+ -|.+||..+ .. +..+...+ ....-....|.++..+++| . |-.|+
T Consensus       258 -----~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt  327 (795)
T 4a2l_A          258 -----KSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT-DS-FASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGT  327 (795)
T ss_dssp             -----TSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT-TE-EEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEE
T ss_pred             -----cccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC-Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEE
Confidence                 0112456999999988887766654 588898773 32 22221110 0111134579999999987 4 55677


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeec
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~  353 (487)
                      .++.|..|+..++..     ..+.. ...+   .  .-....|.++...++|.+.+...++-|..|+..+ +. ...+..
T Consensus       328 ~~~Gl~~~~~~~~~~-----~~~~~-~~~~---~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~  394 (795)
T 4a2l_A          328 YFGGLNYYHPIRNRF-----KNIRN-IPYK---N--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTL  394 (795)
T ss_dssp             SSSCEEEECGGGGSS-----EEECC-CTTS---S--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECC
T ss_pred             CCCCeEEeCCCcccc-----eEEcC-CCCC---C--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEec
Confidence            777789998766432     11211 0000   0  0013569999999998866655557899999865 33 222221


Q ss_pred             cc-ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec-----cCCccccceEeeCCcc
Q 011368          354 HE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRA  427 (487)
Q Consensus       354 ~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~  427 (487)
                      .. .....    .   ....|.+++..++|+.|..|+.++-|.+||..+++.  ..+..     +...|.++...  +++
T Consensus       395 ~~~~~~~~----l---~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d--~~g  463 (795)
T 4a2l_A          395 QEDESARG----I---GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPD--GEG  463 (795)
T ss_dssp             C------C----C---SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEEC--SSS
T ss_pred             CCCCcccC----C---CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEEC--CCC
Confidence            11 00000    0   011235888888888466677777899999887643  22221     12233333332  244


Q ss_pred             ccccccceeeecccceecCCCCCcccccc-------c-cCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          428 RRSSLSNLTRGLYRQAHENSSSGHHELSY-------N-LSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       428 ~~~~~~~l~~g~~~~~~~w~~~~~~~~~~-------~-~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                      .+      -.|...+...++.........       . ....|.++...++|.+.+... ++++.|.
T Consensus       464 ~l------wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~  523 (795)
T 4a2l_A          464 NL------WLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK  523 (795)
T ss_dssp             CE------EEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred             CE------EEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence            43      333334444442221111111       1 235789999999998877665 7888875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=3.4e-07  Score=92.06  Aligned_cols=192  Identities=10%  Similarity=0.105  Sum_probs=112.1

Q ss_pred             eeEEEeCCCCCEEEEe-cCC-------------------eEEEEEccCCCceeEEeecCCCC---CCCCCCcEEEEEEec
Q 011368          207 INSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHP  263 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p  263 (487)
                      ...++++|++..++.+ .++                   .|..+|.++++.....- ..+..   +.. .....-+....
T Consensus       245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~-~~~~d~wd~~~-~~~p~l~~~~~  322 (677)
T 1kb0_A          245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ-ETPGDNWDYTS-TQPMILADIKI  322 (677)
T ss_dssp             CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCC-CSCCEEEEEEE
T ss_pred             ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe-cCCCccccccc-CCCcEEEeccc
Confidence            3467788888888877 553                   58999999666554431 11110   001 11222233334


Q ss_pred             CCC--CEEEEEeCCCeEEEEEccCCccccccceeecccccc-------cCcc-------------cccc---ccccceeE
Q 011368          264 IYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-------HGSK-------------SFFT---EIIASISD  318 (487)
Q Consensus       264 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-------~~~~-------------~~~~---~~~~~v~~  318 (487)
                      +|.  ..++.++.+|.+.++|.++++.+.    .+......       ....             ..++   +.. .-..
T Consensus       323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~  397 (677)
T 1kb0_A          323 AGKPRKVILHAPKNGFFFVLDRTNGKFIS----AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHP  397 (677)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSC
T ss_pred             CCcEeeEEEEECCCCEEEEEECCCCCEec----cccccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCC
Confidence            552  468888999999999999998642    11110000       0000             0000   000 1136


Q ss_pred             EEEcCCCCEEEEEe--------------------------------------------CCeEEEEeCCCCCceeeeeecc
Q 011368          319 IKFANDGQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       319 v~~s~~~~~l~s~~--------------------------------------------d~~i~iwd~~~~~~~~~~~~~~  354 (487)
                      ++++|++.++++..                                            .+.|..||+.+ ++.+..+...
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~  476 (677)
T 1kb0_A          398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHV  476 (677)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEES
T ss_pred             ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCC
Confidence            78899888777631                                            16799999987 7777666543


Q ss_pred             cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC-CccccceEee
Q 011368          355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQA  423 (487)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~  423 (487)
                      ...                +...++.++..+++++.||.+++||.++++. +..+.... .....+.+..
T Consensus       477 ~~~----------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~y~~  529 (677)
T 1kb0_A          477 SPW----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMV  529 (677)
T ss_dssp             SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEE
T ss_pred             CCC----------------cCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeeeCCCCcccCCEEEEe
Confidence            221                2445666788889999999999999999955 45554333 2333444433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.89  E-value=7.6e-07  Score=82.41  Aligned_cols=172  Identities=10%  Similarity=0.019  Sum_probs=101.1

Q ss_pred             ceeEEEeCCCCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-----
Q 011368          206 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----  273 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----  273 (487)
                      .-..+..+|+| +++++ .+      +.|.++|.++ .+.+..+...    ......-+.+.|+|++ +.+++..     
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T-~~v~~~~~~~----~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~  211 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS-FEPLGKWEID----RGDQYLAYDFWWNLPN-EVLVSSEWAVPN  211 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT-CCEEEECCSB----CTTCCCCCCEEEETTT-TEEEECBCCCHH
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC-CeEEEEEccC----CCCccccceEEECCCC-CEEEEccCcCcc
Confidence            34567788999 77776 55      7899999984 4444443111    0111223467889999 8888874     


Q ss_pred             --------------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE--cCCCCEEEEE-e----
Q 011368          274 --------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSR-D----  332 (487)
Q Consensus       274 --------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~--s~~~~~l~s~-~----  332 (487)
                                    .+.+|.+||+.+++..    ..+.. .          ........+.|  +|+++++..+ .    
T Consensus       212 ~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~v-g----------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~  276 (462)
T 2ece_A          212 TIEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTL-G----------EENRMALELRPLHDPTKLMGFINMVVSLK  276 (462)
T ss_dssp             HHTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEES-C----------TTEEEEEEEEECSSTTCCEEEEEEEEETT
T ss_pred             ccccccchhhhhhccCCEEEEEECCCCcEe----eEEec-C----------CCCCccceeEeeECCCCCEEEEEEeeecc
Confidence                          3689999999987543    33333 0          00123445555  9999987764 4    


Q ss_pred             -C-CeEEEEeCCCCCce--eeeeeccccccc-cccccc----CCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCC
Q 011368          333 -Y-MNLKLWDIRMDSTP--VATFKIHEHLRP-KLCDLY----NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  402 (487)
Q Consensus       333 -d-~~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~  402 (487)
                       . ++|.+|.... +..  ...+......+. .+..+.    ....  ....+.+||||++|.++.. .+.|.+||+...
T Consensus       277 ~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~--~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          277 DLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP--LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECC--CCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             CCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCC--ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence             4 7888877653 321  111111110000 000000    0000  1248999999999987775 589999999643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=1.4e-09  Score=101.18  Aligned_cols=189  Identities=10%  Similarity=0.009  Sum_probs=96.4

Q ss_pred             CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEE
Q 011368           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (487)
Q Consensus        43 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~  122 (487)
                      ++..+++++.||.|+.||..+++..                           -.+.. .             .+.+..+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~-   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPT-   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------Cceecce-
Confidence            5678999999999999999888652                           12221 1             1222223 


Q ss_pred             ecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeeccc
Q 011368          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHA  202 (487)
Q Consensus       123 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (487)
                       ..++..+++++.|+.|+.||..+++...........                                         ..
T Consensus        46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-----------------------------------------~~   83 (369)
T 2hz6_A           46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-----------------------------------------LV   83 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-----------------------------------------HH
T ss_pred             -EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-----------------------------------------cc
Confidence             245667778889999999999888654321100000                                         00


Q ss_pred             CCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          203 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      ...++    +. ++..++++ .++.|+.||.++++.....        ..+.    ...++|++ ..+++++.++.|..|
T Consensus        84 ~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~--------~~~~----~~~~~p~~-~~v~~~~~dg~v~a~  145 (369)
T 2hz6_A           84 QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL--------SSAF----ADSLSPST-SLLYLGRTEYTITMY  145 (369)
T ss_dssp             TTCSC----C------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECC
T ss_pred             ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe--------cCCC----cccccccC-CEEEEEecCCEEEEE
Confidence            01111    11 24456666 8999999999966544321        2221    23456677 889999999999999


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCC----CCEEEEEeCCeEEEEeCCCCCceeeeeec
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~----~~~l~s~~d~~i~iwd~~~~~~~~~~~~~  353 (487)
                      |.++++.+    ..+..+               ......+.++    +..++++.++.|+.||.++ ++.+.....
T Consensus       146 d~~tG~~~----W~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~  201 (369)
T 2hz6_A          146 DTKTRELR----WNATYF---------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES-GDVLWIQNY  201 (369)
T ss_dssp             CSSSSSCC----CEEEEE---------------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT-CCEEEEEEC
T ss_pred             ECCCCCEE----EeEecc---------------cccCccccCCccccceEEEECCCCEEEEEECCC-CcEEEEecC
Confidence            99998744    222220               1122223332    4444444569999999987 777766653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.87  E-value=9e-07  Score=89.21  Aligned_cols=200  Identities=12%  Similarity=0.087  Sum_probs=114.8

Q ss_pred             eEEEeCCCCCEEEEe-cCC-------------------eEEEEEccCCCceeEEeecCCCCCCC--CCCcEEEEEEecCC
Q 011368          208 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY  265 (487)
Q Consensus       208 ~~i~~s~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~  265 (487)
                      ..++++|++.+++.+ .++                   .|..+|.++++.....- ..+...-.  ....+.-.....+|
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee-cCCcccccccCCCCcEEEeeccCC
Confidence            467788888888888 665                   39999999766555431 11111000  11222222333355


Q ss_pred             CC---EEEEEeCCCeEEEEEccCCccccccce---eeccccc----cc-----------Cc--cccccccc--cceeEEE
Q 011368          266 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SH-----------GS--KSFFTEII--ASISDIK  320 (487)
Q Consensus       266 ~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~h~~----~~-----------~~--~~~~~~~~--~~v~~v~  320 (487)
                       +   .++.++.+|.+.++|.++++.+.....   .+..+..    .+           ..  ...+++..  ..-..++
T Consensus       317 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a  395 (689)
T 1yiq_A          317 -KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS  395 (689)
T ss_dssp             -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred             -cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence             4   788999999999999999986421000   0000000    00           00  00000000  0122378


Q ss_pred             EcCCCCEEEEEe----------------------------------------------CCeEEEEeCCCCCceeeeeecc
Q 011368          321 FANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIH  354 (487)
Q Consensus       321 ~s~~~~~l~s~~----------------------------------------------d~~i~iwd~~~~~~~~~~~~~~  354 (487)
                      ++|+..++++..                                              +|.|+.||+.+ ++.+..+..+
T Consensus       396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~  474 (689)
T 1yiq_A          396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYV  474 (689)
T ss_dssp             EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEES
T ss_pred             ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCC
Confidence            888877776541                                              26688999987 7777776654


Q ss_pred             cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc-cccceEeeCCcccc
Q 011368          355 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-NRKPILQAAPRARR  429 (487)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~  429 (487)
                      ...                ....++..+.++++|+.||.++.||.++|+. +..++..... ...+.+..  +++.
T Consensus       475 ~~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~ty~~--~G~q  531 (689)
T 1yiq_A          475 TIF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASGVMAAPVTYSV--DGEQ  531 (689)
T ss_dssp             SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEE--TTEE
T ss_pred             CCc----------------cCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCCcccCceEEEE--CCEE
Confidence            322                1335556778999999999999999999955 5555544332 34455544  4543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.85  E-value=8.2e-10  Score=102.83  Aligned_cols=186  Identities=10%  Similarity=0.057  Sum_probs=99.2

Q ss_pred             CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCC
Q 011368          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDF  205 (487)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (487)
                      ++..+++++.|+.|+.||..+|+......                                               .  +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-----------------------------------------------~--~   38 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-----------------------------------------------E--D   38 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------------------------C--C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec-----------------------------------------------C--C
Confidence            57789999999999999999998765421                                               1  2


Q ss_pred             ceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC-CcEE-EEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          206 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~-~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      .+.+..+..++..++++ .|+.|+.||.++++.....        ..+. ..+. +..+. .+ ..+++++.++.|..||
T Consensus        39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~--------~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D  108 (369)
T 2hz6_A           39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL--------PFTIPELVQASPCRS-SD-GILYMGKKQDIWYVID  108 (369)
T ss_dssp             CSCCCC-----CCEEECTTTCCEEEC-----CCSEEC--------SCCHHHHHTTCSCC-------CCCCEEEEEEEEEC
T ss_pred             CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee--------eccCccccccCceEe-cC-CEEEEEeCCCEEEEEE
Confidence            23333344567788887 9999999999855543321        1110 0000 00111 23 5677888899999999


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      .++++..    ..+..+              .   ...++|++..+++++ ++.|+.||.++ ++.+..+......    
T Consensus       109 ~~tG~~~----w~~~~~--------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~----  162 (369)
T 2hz6_A          109 LLTGEKQ----QTLSSA--------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA----  162 (369)
T ss_dssp             CC-------------------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC----
T ss_pred             CCCCcEE----EEecCC--------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc----
Confidence            9998754    233321              1   134456777777765 59999999987 6666555432211    


Q ss_pred             ccccCCCCcceeeEEEEcCCC---CEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          362 CDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                                   ..+++++.   ..+++++.||.|+.||..+++. .....
T Consensus       163 -------------~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~  200 (369)
T 2hz6_A          163 -------------ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV-LWIQN  200 (369)
T ss_dssp             -------------CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE-EEEEE
T ss_pred             -------------CccccCCccccceEEEECCCCEEEEEECCCCcE-EEEec
Confidence                         23333332   4577788999999999998854 33333

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.84  E-value=9.1e-08  Score=87.98  Aligned_cols=250  Identities=9%  Similarity=-0.003  Sum_probs=135.5

Q ss_pred             EEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC-Ccccc
Q 011368           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (487)
                      .++|+||+++++++.          .++.|.+||..+++.                           ..++... .+.| 
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---------------------------v~~I~v~~~~~~-  120 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAPRF-  120 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------EEEEEETTSCSC-
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------------------------EEEEECCCcccc-
Confidence            799999999988886          368899999988764                           2333211 0000 


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEeC--CCcEEE--EEccccceeEeeecCCCCceeeeeccccccc-cccccCCC
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPP  180 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  180 (487)
                           ..-.....+++  +|||++++.+..  +..+.+  +|..+  ...+ ....     ++.. .+++. .+..... 
T Consensus       121 -----~~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~-----~~~~-~p~g~~~~~~~~~-  183 (368)
T 1mda_H          121 -----SVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSAS-----CFHI-HPGAAATHYLGSC-  183 (368)
T ss_dssp             -----CBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSS-----CCCC-EEEETTEEECCCC-
T ss_pred             -----ccCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCC-----ceEE-ccCCCeEEEEEcC-
Confidence                 00012456888  689999988864  467888  88877  2222 1110     0111 12221 1111111 


Q ss_pred             Ccceeeeeeeec-----cceee---eecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCce-eEEeecCCCCCC
Q 011368          181 SFAHGYHLEWTE-----NMATK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMD  250 (487)
Q Consensus       181 ~~~~~~~~~~~~-----~~~~~---~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~  250 (487)
                      +..... ...+.     .+...   ..+.-...+.   . .+++..++.. . +.+.+.|+...... ...+........
T Consensus       184 dg~~~~-vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~  257 (368)
T 1mda_H          184 PASLAA-SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             TTSCEE-EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             CCCEEE-EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence            111111 11111     00000   0011112232   3 4555555555 7 89999998743221 111100000000


Q ss_pred             CC---CCcEEEEEEecCCCCEEEEEeC---------CCeEEEEEccCCccccccceeecccccccCccccccccccceeE
Q 011368          251 DL---TEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  318 (487)
Q Consensus       251 ~~---~~~v~~v~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  318 (487)
                      .+   ......++++|++ +.++++..         ++.+.++|+.+.+..    ..+..              ......
T Consensus       258 ~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v--------------g~~p~g  318 (368)
T 1mda_H          258 ADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GHDSDA  318 (368)
T ss_dssp             HTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EEEECE
T ss_pred             ccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC--------------CCCcce
Confidence            01   1111226899999 66665532         235679999998755    44443              235889


Q ss_pred             EEEcCCCCE-EEEEe--CCeEEEEeCCCCCceeeeeeccccc
Q 011368          319 IKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       319 v~~s~~~~~-l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      ++|+|||+. +++..  ++.|.++|+.+ .+.+..+.....+
T Consensus       319 i~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P  359 (368)
T 1mda_H          319 IIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             EEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             EEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence            999999984 45554  59999999998 8888888866654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.77  E-value=2.8e-05  Score=68.47  Aligned_cols=218  Identities=12%  Similarity=0.126  Sum_probs=129.8

Q ss_pred             cEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      .+..++|++++..|+.+. .++.|.+++.++...                           ...+....           
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------------------~~~~~~~~-----------   78 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------------------TTIIRQDL-----------   78 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------EEEECTTC-----------
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------EEEEECCC-----------
Confidence            467999999776666554 567899999865532                           11111111           


Q ss_pred             ccceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          113 EEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                       .....+++.  +++ .++++-...+.|.+++.+......+                                       
T Consensus        79 -~~p~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~~~~~~---------------------------------------  116 (267)
T 1npe_A           79 -GSPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVL---------------------------------------  116 (267)
T ss_dssp             -CCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------------------
T ss_pred             -CCccEEEEE--ecCCeEEEEECCCCEEEEEEcCCCCEEEE---------------------------------------
Confidence             356889984  544 4445555678899988865432211                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe--c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                              ..........++++|++..|+.+  .  .+.|..++++. .....+.       .........++++|++ .
T Consensus       117 --------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~-------~~~~~~P~gia~d~~~-~  179 (267)
T 1npe_A          117 --------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILA-------QDNLGLPNGLTFDAFS-S  179 (267)
T ss_dssp             --------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEE-------CTTCSCEEEEEEETTT-T
T ss_pred             --------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEE-------ECCCCCCcEEEEcCCC-C
Confidence                    01112346789999966655554  3  46888888873 2221111       1122357899999987 5


Q ss_pred             EEE-EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368          268 LLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~  344 (487)
                      .|+ +-...+.|..+|+......    .....              ......++..  +..|..++  .+.|.++|..+ 
T Consensus       180 ~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-  238 (267)
T 1npe_A          180 QLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-  238 (267)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-
T ss_pred             EEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC-
Confidence            554 4455689999998754321    11111              1223456554  45555553  38999999986 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  383 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  383 (487)
                      ++.+..+.......+              ..+++.|++.
T Consensus       239 g~~~~~i~~g~~~~p--------------~gi~~~~~~~  263 (267)
T 1npe_A          239 SKEMDTFHPHKQTRL--------------YGITIALSQC  263 (267)
T ss_dssp             TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred             CCceEEEcccccccc--------------ceeeecCccC
Confidence            777777754332111              3788888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.76  E-value=6.3e-06  Score=83.07  Aligned_cols=200  Identities=11%  Similarity=-0.005  Sum_probs=107.3

Q ss_pred             EEEEecCCCCEEEEEeCCCe-------------------EEEEEccCCccccccceeecccccccCccccccccccceeE
Q 011368          258 SAEFHPIYCNLLAYSSSRGF-------------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  318 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  318 (487)
                      .++++|++ .+++.++.++.                   |..+|.++++..    -.++....  .... +. ....+.-
T Consensus       239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~----W~~~~~~~--d~wd-~~-~~~~~~l  309 (689)
T 1yiq_A          239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV----WHYQTTPG--DAWD-YT-ATQHMIL  309 (689)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE----EEEESSTT--CCSC-CC-CCSCEEE
T ss_pred             ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee----EeeecCCc--cccc-cc-CCCCcEE
Confidence            57889988 88888887764                   999999998754    22222000  0000 00 0111222


Q ss_pred             EEEcCCCC---EEEEEe-CCeEEEEeCCCCCceeeeeecccc-cc-------------------------cccccccCCC
Q 011368          319 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATFKIHEH-LR-------------------------PKLCDLYNND  368 (487)
Q Consensus       319 v~~s~~~~---~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~~  368 (487)
                      .....+|+   .++.++ +|.++++|.++ ++++........ ..                         ...++-....
T Consensus       310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg  388 (689)
T 1yiq_A          310 AELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA  388 (689)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred             EeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence            22223564   666665 49999999987 777644322110 00                         0000000000


Q ss_pred             CcceeeEEEEcCCCCEEEEEcC---------------------------------------------CCcEEEEEeCCCC
Q 011368          369 SIFDKFECSVSGDGLHFATGSY---------------------------------------------SNLLRIFSHGVGS  403 (487)
Q Consensus       369 ~~~~~~~~~~s~d~~~l~sg~~---------------------------------------------dg~i~iwd~~~~~  403 (487)
                      ..+  ..++++|+..++++...                                             +|.|+.||+.+++
T Consensus       389 ~~w--~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          389 HDW--QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             SCS--SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cCC--CcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence            011  24789998887776522                                             3789999999995


Q ss_pred             ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCcccccc-ccCCCeEEEEEcCCCCE-EEEec
Q 011368          404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY-NLSSKLLHLAWHPTTNL-IACAN  478 (487)
Q Consensus       404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~-~~~~~v~~~~~spd~~~-la~~s  478 (487)
                      . ....+.+.. +....+..  .+.+     ++.|+.|+. +.|  .+++.+.... +....-.-+.|..||+. +++.+
T Consensus       467 ~-~W~~~~~~~-~~~g~~~t--aggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          467 A-AWEVPYVTI-FNGGTLST--AGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             E-EEEEEESSS-CCCCEEEE--TTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             e-EeEccCCCC-ccCccceE--CCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            4 444444432 33333333  2223     677888887 888  4555554433 22211234667889875 44443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.75  E-value=3.9e-06  Score=84.41  Aligned_cols=198  Identities=9%  Similarity=-0.045  Sum_probs=106.9

Q ss_pred             EEEEEecCCCCEEEEEeCCC-------------------eEEEEEccCCccccccceeecccccccCcccccccccccee
Q 011368          257 TSAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  317 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  317 (487)
                      ..++++|++ ..++.++.++                   .|..+|.++++..    -.++....   ...-+.. .....
T Consensus       246 ~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~----W~~~~~~~---d~wd~~~-~~~p~  316 (677)
T 1kb0_A          246 DSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK----WHYQETPG---DNWDYTS-TQPMI  316 (677)
T ss_dssp             SCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE----EEEESSTT---CCSCCCC-CSCCE
T ss_pred             cceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE----EEEecCCC---ccccccc-CCCcE
Confidence            357889988 8888887664                   5899999998744    22222000   0000000 11222


Q ss_pred             EEEEcCCC---CEEEEEe-CCeEEEEeCCCCCceeeeeeccccc-c--------c-------------ccccccCCCCcc
Q 011368          318 DIKFANDG---QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL-R--------P-------------KLCDLYNNDSIF  371 (487)
Q Consensus       318 ~v~~s~~~---~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~-~--------~-------------~~~~~~~~~~~~  371 (487)
                      -+....+|   ..++.++ +|.++++|..+ ++++..+...... .        +             ..++-......+
T Consensus       317 l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w  395 (677)
T 1kb0_A          317 LADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW  395 (677)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred             EEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC
Confidence            23333467   5677775 49999999987 7777665432110 0        0             000000000011


Q ss_pred             eeeEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEEeCCCCceeEE
Q 011368          372 DKFECSVSGDGLHFATGSY-------------------------------------------SNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       372 ~~~~~~~s~d~~~l~sg~~-------------------------------------------dg~i~iwd~~~~~~~~~~  408 (487)
                        ..++++|++.++++...                                           .|.|..||+.+++. ...
T Consensus       396 --~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~  472 (677)
T 1kb0_A          396 --HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWS  472 (677)
T ss_dssp             --SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEE
T ss_pred             --CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-Eee
Confidence              26789999888877543                                           27899999999854 333


Q ss_pred             EeccCCccccceEeeCCccccccccceeeecccce-ecC--CCCCcccccc-ccCCCeEEEEEcCCCCEEE
Q 011368          409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY-NLSSKLLHLAWHPTTNLIA  475 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w--~~~~~~~~~~-~~~~~v~~~~~spd~~~la  475 (487)
                      .+. ..++....+..  ++..     ++.|+.++. +.|  .+++.+.... +....-.-+.|.++|+.++
T Consensus       473 ~~~-~~~~~~g~~~~--~g~~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          473 VEH-VSPWNGGTLTT--AGNV-----VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEE-SSSCCCCEEEE--TTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cCC-CCCCcCcceEe--CCCE-----EEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            332 23344444444  2333     566777777 777  3444444332 2211223356778887544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.73  E-value=0.00018  Score=74.10  Aligned_cols=342  Identities=10%  Similarity=0.016  Sum_probs=182.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ...|.++...++|.+.+ |..++.+.+|+..+++.                            ..+......   ...+.
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~----------------------------~~~~~~~~~---~~~l~  261 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEI----------------------------KNYLHSPSN---PKSIS  261 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEE----------------------------EEECCCTTC---TTSCS
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeE----------------------------EEeecCCCC---ccccC
Confidence            45688888888887555 44444488888665432                            111100000   00000


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                       ...|.++..  .++|.+ ..|+.+ -|.+|+..++...........+                                
T Consensus       262 -~~~i~~i~~--d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~--------------------------------  304 (795)
T 4a2l_A          262 -SNYIRSLAM--DSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVEN--------------------------------  304 (795)
T ss_dssp             -CSBEEEEEE--CTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTST--------------------------------
T ss_pred             -CCeEEEEEE--cCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCC--------------------------------
Confidence             156888887  456654 445555 5888998777654432111000                                


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                              ..-....|.++...++|.+.+...++-|..|+.....  +..+...+..-.-....|.++...++| . |-.
T Consensus       305 --------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWi  372 (795)
T 4a2l_A          305 --------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWI  372 (795)
T ss_dssp             --------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTS-C-EEE
T ss_pred             --------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEE
Confidence                    0123456999999999987766677778888876322  222211110001124569999998887 4 555


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      |+.++.|..||..++...     .+......+.  .  ......|.++...++|+.|..|. ++.|.+||..+ ++ ...
T Consensus       373 Gt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~--~--~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~  441 (795)
T 4a2l_A          373 GTNDGGLNLYNPITQRFT-----SYTLQEDESA--R--GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VEN  441 (795)
T ss_dssp             EESSSCEEEECTTTCCEE-----EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEE
T ss_pred             EECCCCeEEEcCCCCcEE-----EEecCCCCcc--c--CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEE
Confidence            777777999998775421     1111000000  0  00125789999989998444454 47899999875 33 333


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe-----ccCCccccceEeeCC
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-----AGKNENRKPILQAAP  425 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~  425 (487)
                      +.......          ....|.++...++|.+.+.. . +.+.+|+..++........     .....+.++...  .
T Consensus       442 ~~~~~~~l----------~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~  507 (795)
T 4a2l_A          442 FNQRNSQL----------VNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD--S  507 (795)
T ss_dssp             ECTTTSCC----------SCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC--T
T ss_pred             eecCCCCc----------CCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC--C
Confidence            32111000          01123588888888866544 4 4588899876632211110     011233333332  2


Q ss_pred             ccccccccceeeecccceecCCCCCccccc-------cccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          426 RARRSSLSNLTRGLYRQAHENSSSGHHELS-------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~-------~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                      ++.+      -.|...+...++........       .-....|.++...++|.+.+.... +++.|+
T Consensus       508 ~g~l------Wigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d  568 (795)
T 4a2l_A          508 HKRL------WIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFN  568 (795)
T ss_dssp             TCCE------EEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEE
T ss_pred             CCCE------EEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeEC
Confidence            4443      22333444444211111011       113457899999999987665554 888875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.69  E-value=5.6e-05  Score=68.06  Aligned_cols=235  Identities=12%  Similarity=0.135  Sum_probs=130.1

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      .....++|+++|+++++-..++.|..||.++..                            ...+. -.           
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------~~~~~-~~-----------   71 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------QIHAT-VE-----------   71 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------EEEEE-CS-----------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----------------------------EEEEe-CC-----------
Confidence            457789999999977776678889888865431                            11111 11           


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                       ..+..+++  .++++++++.....  .|..++..+++...+...                                   
T Consensus        72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-----------------------------------  113 (306)
T 2p4o_A           72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-----------------------------------  113 (306)
T ss_dssp             -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred             -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-----------------------------------
Confidence             45788998  57888666554333  355566666665433110                                   


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEEEEecCCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 ........++..+++..+++. .++.|+.+|.......+......  .......-.....+  +|++ .
T Consensus       114 -----------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg-~  179 (306)
T 2p4o_A          114 -----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG-N  179 (306)
T ss_dssp             -----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET-T
T ss_pred             -----------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC-C
Confidence                       011112344444555555555 68888888876321111111000  00011111234555  7887 5


Q ss_pred             EEEEE-eCCCeEEEEEccC-CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          268 LLAYS-SSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                      .|+.+ ...+.|..+|+.. +...  ....+..              ......+++.++|+++++.. .+.|.++|..  
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~--  241 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD--  241 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT--
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC--
Confidence            55544 5578999999875 3211  1122211              12457789999998766654 4889999874  


Q ss_pred             Cceee--eeecccccccccccccCCCCcceeeEEEEc---CCCCEEEEEcCCC
Q 011368          345 STPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN  392 (487)
Q Consensus       345 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~~l~sg~~dg  392 (487)
                      ++...  .+...-.               ..++++|.   ||++.|+.++..+
T Consensus       242 G~~~~~~~~~~~~~---------------~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          242 RSTTIIAQAEQGVI---------------GSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CCEEEEECGGGTCT---------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCEEEEeecccccC---------------CceEEEEecccCCCCEEEEECCCC
Confidence            44322  2221101               12589998   8887777665543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=7.3e-06  Score=71.11  Aligned_cols=209  Identities=9%  Similarity=0.004  Sum_probs=123.9

Q ss_pred             eeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          116 INRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ...+.|  ++++.++++.+.  ++.|+++|..+++.......                                      
T Consensus        23 ~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--------------------------------------   62 (266)
T 2iwa_A           23 TQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--------------------------------------   62 (266)
T ss_dssp             EEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--------------------------------------
T ss_pred             cccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--------------------------------------
Confidence            578999  466655555543  68999999999987654221                                      


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             .. ......+++.  +..| ++. .++.+.++|..+. +.+..+...    .+.     ...++++| ..+++
T Consensus        63 -------~~-~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-~v~~~i~~g----~~~-----g~glt~Dg-~~l~v  121 (266)
T 2iwa_A           63 -------DD-SYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-SNIKNFTHQ----MKD-----GWGLATDG-KILYG  121 (266)
T ss_dssp             -------CT-TCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT-EEEEEEECC----SSS-----CCEEEECS-SSEEE
T ss_pred             -------CC-CcceEEEEEe--CCEEEEEEecCCEEEEEECCCC-cEEEEEECC----CCC-----eEEEEECC-CEEEE
Confidence                   11 1112244554  4444 445 8999999999844 444443211    011     12355677 66666


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      +..++.|.++|..+.+..    ..+.. ...+       ..-..++.+.|. +|+..+... .+.|.+.|..+ ++.+..
T Consensus       122 s~gs~~l~viD~~t~~v~----~~I~V-g~~~-------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~  187 (266)
T 2iwa_A          122 SDGTSILYEIDPHTFKLI----KKHNV-KYNG-------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGW  187 (266)
T ss_dssp             ECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEE
T ss_pred             ECCCCeEEEEECCCCcEE----EEEEE-CCCC-------cccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEE
Confidence            667889999999887654    33332 0000       001236678888 675444443 48999999997 888887


Q ss_pred             eecccccccc-cccccCCCCcceeeEEEEcCCCCE-EEEEcCCCcEEEEEeCCC
Q 011368          351 FKIHEHLRPK-LCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       351 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~~dg~i~iwd~~~~  402 (487)
                      +......... .......+.   ...++|+|+++. ++++...+.+++.++...
T Consensus       188 I~~~g~~~~~~~~~~~~~~v---~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          188 ILLPNLRKKLIDEGFRDIDV---LNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EECHHHHHHHHHTTCTTCCC---EEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EECCCcccccccccccccCc---eEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            7643110000 000000001   158999999765 556667789999998754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.64  E-value=6.8e-06  Score=78.92  Aligned_cols=147  Identities=13%  Similarity=0.164  Sum_probs=94.1

Q ss_pred             CCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE-e-cCCCCEEEEEe----------------
Q 011368          214 SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS----------------  273 (487)
Q Consensus       214 ~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~-p~~~~~l~~~~----------------  273 (487)
                      +||++++.+  .+.+|.+.|++ ..++.+++.++      ....+..+++ + |++ .++++++                
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip------~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCG
T ss_pred             cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCC------CCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccc
Confidence            388888887  67789999999 44566654322      1234678887 4 898 8887774                


Q ss_pred             --CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCC----------------e
Q 011368          274 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM----------------N  335 (487)
Q Consensus       274 --~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~----------------~  335 (487)
                        .++.+.+.|..+.+..    ..+..              .+....++++|+|+++++.+.+                .
T Consensus       171 ~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~  232 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  232 (595)
T ss_dssp             GGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             cccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence              2457889999886543    22222              1234667889999998876521                1


Q ss_pred             EEEEe-----------------------CCCC-Cce-eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-
Q 011368          336 LKLWD-----------------------IRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-  389 (487)
Q Consensus       336 i~iwd-----------------------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-  389 (487)
                      |.+.|                       .++. +.. +..+.....+                .++.++|||+++++++ 
T Consensus       233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~~  296 (595)
T 1fwx_A          233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAGK  296 (595)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEECT
T ss_pred             EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeCC
Confidence            44444                       3320 011 2222222211                4799999999877665 


Q ss_pred             CCCcEEEEEeCCC
Q 011368          390 YSNLLRIFSHGVG  402 (487)
Q Consensus       390 ~dg~i~iwd~~~~  402 (487)
                      .+.+|.++|+.+.
T Consensus       297 ~s~~VsVid~~~~  309 (595)
T 1fwx_A          297 LSPTVTVLDVTRF  309 (595)
T ss_dssp             TSSBEEEEEGGGH
T ss_pred             CCCeEEEEECccc
Confidence            6789999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.64  E-value=2.1e-06  Score=82.45  Aligned_cols=215  Identities=8%  Similarity=0.085  Sum_probs=124.1

Q ss_pred             CCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          126 NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       126 ~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      ||+++.... .+..|.+.|+.+.+...+....                                              ..
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip----------------------------------------------~g  133 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP----------------------------------------------NA  133 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS----------------------------------------------SC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC----------------------------------------------CC
Confidence            567766654 5667999999998866643211                                              12


Q ss_pred             CceeEEEe-C-CCCCEEEEe-------------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec
Q 011368          205 FNINSISN-N-SDCETFVSA-------------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  263 (487)
Q Consensus       205 ~~v~~i~~-s-~~~~~l~s~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  263 (487)
                      .....+++ + |++++++++                   .++.+.+.|.++.....++.      ..+   ....++++|
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~------Vgg---~pd~~~~sp  204 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL------VSG---NLDNCDADY  204 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE------ESS---CCCCEEECS
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE------eCC---CccceEECC
Confidence            23556665 3 666666555                   24578888888544333321      112   235577899


Q ss_pred             CCCCEEEEEeCCC---------------eEEEEEccCCccc--------cccceeecccccccCcc--ccccccccceeE
Q 011368          264 IYCNLLAYSSSRG---------------FVRLVDMRQSALC--------DHSARILRDAAESHGSK--SFFTEIIASISD  318 (487)
Q Consensus       264 ~~~~~l~~~~~dg---------------~i~iwd~~~~~~~--------~~~~~~~~~h~~~~~~~--~~~~~~~~~v~~  318 (487)
                      +| +++++.+.+.               .|.+.|.......        ...+..+... ......  ..++ -.....+
T Consensus       205 dG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~-~~~~~~~~~~Ip-vg~~PhG  281 (595)
T 1fwx_A          205 EG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR-KEASSLFTRYIP-IANNPHG  281 (595)
T ss_dssp             SS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS-GGGCCSSEEEEE-EESSCCC
T ss_pred             CC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc-ccCCceeEEEEe-cCCCceE
Confidence            98 8888777542               3555554432100        0111222220 000000  0000 0235678


Q ss_pred             EEEcCCCCEEEEEe--CCeEEEEeCCCCCc------------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCE
Q 011368          319 IKFANDGQHLLSRD--YMNLKLWDIRMDST------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  384 (487)
Q Consensus       319 v~~s~~~~~l~s~~--d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  384 (487)
                      +.++|||+++++++  +.+|.++|+.+ .+            .+..+.....+                +.++|+|+|..
T Consensus       282 v~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~gP----------------~h~aF~~dG~a  344 (595)
T 1fwx_A          282 CNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLGP----------------LHTAFDGRGNA  344 (595)
T ss_dssp             EEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSCE----------------EEEEECTTSEE
T ss_pred             EEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCCc----------------ceEEECCCCeE
Confidence            99999999998875  49999999975 21            22233322222                58999999944


Q ss_pred             EEEEcCCCcEEEEEeCCC---------CceeEEEeccCCc
Q 011368          385 FATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE  415 (487)
Q Consensus       385 l~sg~~dg~i~iwd~~~~---------~~~~~~~~~~~~~  415 (487)
                      .++.--|+.|.+||+.+.         ...+..+..|..+
T Consensus       345 Y~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          345 YTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             EEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence            445667899999999872         2446666666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.64  E-value=3.5e-05  Score=69.97  Aligned_cols=254  Identities=11%  Similarity=0.057  Sum_probs=142.3

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc-------
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY-------  106 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------  106 (487)
                      ...+++|+++|+++.++..++.|..|+..+++.                            ..+.... .+..       
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~----------------------------~~~~~~~-~~~~~~~~~g~   70 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF----------------------------VDFAYAS-PYWNKAFCENS   70 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE----------------------------EEEEESC-TTCCHHHHTTC
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce----------------------------EEEeccc-ccccccccccc
Confidence            356788999999788888889999998765432                            1111000 0000       


Q ss_pred             --ccccccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          107 --LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       107 --~~~~~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                        .........+..+++  .+ ++. |+.+...+.|..+|..++....+...                            
T Consensus        71 ~~~~~~~~~~~p~gi~~--~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~----------------------------  119 (322)
T 2fp8_A           71 TDAEKRPLCGRTYDISY--NLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATS----------------------------  119 (322)
T ss_dssp             CCGGGHHHHCCEEEEEE--ETTTTE-EEEEETTTEEEEECTTCEECEEEESE----------------------------
T ss_pred             cchhccccCCCCceEEE--cCCCCc-EEEEECCCCEEEEeCCCCEEEEeccc----------------------------
Confidence              000001135788888  44 454 45554445588888765543322100                            


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCC-CCCEEEEe-c-----------------CCeEEEEEccCCCceeEEeec
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDM  244 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~  244 (487)
                                     .........+.+++.+ +|++.++. .                 ++.|..+|..+. ......  
T Consensus       120 ---------------~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~--  181 (322)
T 2fp8_A          120 ---------------VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK-ETTLLL--  181 (322)
T ss_dssp             ---------------ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT-EEEEEE--
T ss_pred             ---------------CCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC-EEEEec--
Confidence                           0001123467899999 89877764 3                 266888887632 222111  


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCCEEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC
Q 011368          245 KPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  323 (487)
Q Consensus       245 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~  323 (487)
                            ........++++|++ +.|+.+ +..+.|..|++.....-  ....+..             ..+ ...+++.+
T Consensus       182 ------~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~  238 (322)
T 2fp8_A          182 ------KELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNA  238 (322)
T ss_dssp             ------EEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECT
T ss_pred             ------cCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECC
Confidence                  011224678999998 766555 55689999998753210  0111111             012 67789999


Q ss_pred             CCCEEEEE-e----------CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCC
Q 011368          324 DGQHLLSR-D----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  392 (487)
Q Consensus       324 ~~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg  392 (487)
                      +|++.++. .          .+.|..+|..  ++.+..+.......           ...++.+++ .++++.++...++
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~  304 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHG  304 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCS
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCC
Confidence            99877764 3          2567777763  66666665443210           001135666 3666666666778


Q ss_pred             cEEEEEeCCC
Q 011368          393 LLRIFSHGVG  402 (487)
Q Consensus       393 ~i~iwd~~~~  402 (487)
                      .|.++++...
T Consensus       305 ~i~~~~~~~~  314 (322)
T 2fp8_A          305 SVGILVYDKK  314 (322)
T ss_dssp             EEEEEEC---
T ss_pred             ceEEEecccc
Confidence            9999998644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.63  E-value=2.5e-06  Score=77.87  Aligned_cols=211  Identities=10%  Similarity=0.028  Sum_probs=118.3

Q ss_pred             CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccce
Q 011368          216 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  294 (487)
Q Consensus       216 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  294 (487)
                      +..+..+ .++.|..+|.. +......        ......+.++...+++ . +..++.++.|..+|.. ++..    .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence            3455556 88999999987 4443322        1122334555666676 4 6667888999999988 5432    2


Q ss_pred             eecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceee
Q 011368          295 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  374 (487)
Q Consensus       295 ~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (487)
                      .+..             ....+.++...+++.+.++.  +.|..+| .+ +..+.........+               .
T Consensus       171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~  218 (330)
T 3hxj_A          171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T  218 (330)
T ss_dssp             EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred             EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence            2221             02346667777788766555  8899999 54 55555554332211               3


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCC-CCcc
Q 011368          375 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHH  452 (487)
Q Consensus       375 ~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~-~~~~  452 (487)
                      ++...++|. |..++.++.|..++. ++ .....+.........+....  ++.      +..++.++. ..++. ++..
T Consensus       219 ~~~~~~~g~-l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~~~--~g~------l~v~t~~ggl~~~d~~g~~~  287 (330)
T 3hxj_A          219 RPAISEDGT-IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIESSPVIGN--TDT------IYFGSYDGHLYAINPDGTEK  287 (330)
T ss_dssp             CCEECTTSC-EEEEETTTEEEEECT-TS-CEEEEEECSSCCCSCCEECT--TSC------EEEECTTCEEEEECTTSCEE
T ss_pred             ceEECCCCe-EEEEcCCCeEEEECC-CC-CEeEEeeCCCCccccceEcC--CCe------EEEecCCCCEEEECCCCcEE
Confidence            677888875 455677788888874 34 33344443333333333321  333      455666644 44432 2222


Q ss_pred             ccccccCCCeEEEEEcCCCCEEEEecCCeEEEE
Q 011368          453 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  485 (487)
Q Consensus       453 ~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~  485 (487)
                      .........+.++...++|.+.+.+.+..+++.
T Consensus       288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL  320 (330)
T ss_dssp             EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred             EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence            222222344556677778876664444445543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.61  E-value=2e-05  Score=68.40  Aligned_cols=209  Identities=7%  Similarity=-0.018  Sum_probs=124.6

Q ss_pred             cEEEEEEcCCCCEEEEEec--CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec--CCCcccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKS  109 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~  109 (487)
                      ....++|++++.++++.+.  ++.|+++|..+++..                           ..+.  .+         
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~---------   65 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDS---------   65 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTT---------
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCC---------
Confidence            3679999998765555443  579999999988652                           2221  21         


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          .....+++.   ++.+.++.-.++.+.++|..+.+......                                   
T Consensus        66 ----~fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~~~i~-----------------------------------  103 (266)
T 2iwa_A           66 ----YFGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-----------------------------------  103 (266)
T ss_dssp             ----CCEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEEEEEE-----------------------------------
T ss_pred             ----cceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEEEEEE-----------------------------------
Confidence                112345552   23444555578999999999877654421                                   


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                 .+ ...  ...+++||+.++.+ .++.|.++|..+.. ....+....  -...-..+..+.|. ++ ..
T Consensus       104 -----------~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~--~~~p~~~~nele~~-dg-~l  164 (266)
T 2iwa_A          104 -----------HQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKY--NGHRVIRLNELEYI-NG-EV  164 (266)
T ss_dssp             -----------CC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEE--TTEECCCEEEEEEE-TT-EE
T ss_pred             -----------CC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECC--CCcccccceeEEEE-CC-EE
Confidence                       11 011  12245578888888 88899999998544 343332110  00111236778888 66 66


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC-CeEEEEeCCC
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRM  343 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~iwd~~~  343 (487)
                      ++....++.|.+.|..+++..    ..+......+.....-..-......|+|+|+++.++.+ .. +.+.+.++..
T Consensus       165 yvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCcEE----EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            666656889999999998765    33332000000000000001356899999998866654 33 8888888864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.58  E-value=4.1e-05  Score=71.25  Aligned_cols=199  Identities=13%  Similarity=0.112  Sum_probs=109.2

Q ss_pred             CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCc
Q 011368          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFN  206 (487)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (487)
                      +..++.++.++.|..+|..+++...........                                     .. ......+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~-------------------------------------~~-~~~~~~~  184 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS-------------------------------------LS-LRGESAP  184 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------------------------------------------CCCCCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc-------------------------------------ee-ecCCCCc
Confidence            347788888999999999988766543211100                                     00 0111111


Q ss_pred             eeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC---CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          207 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       207 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      +    ..  +..++.+ .++.+..+|..++......-...+..   +............  .+ ..++.++.++.+..+|
T Consensus       185 ~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          185 T----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALD  255 (376)
T ss_dssp             E----EE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEE
T ss_pred             E----EE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEE
Confidence            1    11  3466667 88999999998655544321000000   0000000001111  13 5677888899999999


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      .++++..      +...             ......+...  +..+..+ .++.|..+|..+ ++.+..........   
T Consensus       256 ~~tG~~~------w~~~-------------~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~---  310 (376)
T 3q7m_A          256 LRSGQIM------WKRE-------------LGSVNDFIVD--GNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL---  310 (376)
T ss_dssp             TTTCCEE------EEEC-------------CCCEEEEEEE--TTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC---
T ss_pred             CCCCcEE------eecc-------------CCCCCCceEE--CCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc---
Confidence            9988743      2220             0123334433  4455555 458999999987 66665554211110   


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                              .   .....  .+..|+.++.+|.++++|..+++. ......
T Consensus       311 --------~---~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~  346 (376)
T 3q7m_A          311 --------L---TSPVL--YNGNLVVGDSEGYLHWINVEDGRF-VAQQKV  346 (376)
T ss_dssp             --------C---CCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEEEEC
T ss_pred             --------c---cCCEE--ECCEEEEEeCCCeEEEEECCCCcE-EEEEec
Confidence                    0   12222  246788899999999999999854 333433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.55  E-value=2.7e-06  Score=77.66  Aligned_cols=219  Identities=12%  Similarity=0.067  Sum_probs=114.4

Q ss_pred             ceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011368          206 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  285 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~  285 (487)
                      .+.++...+++.+++...+  |..+|.. +....        ............... +  ..+..++.++.|..+|.. 
T Consensus        61 ~~~~~~~~~~g~l~v~t~~--l~~~d~~-g~~~~--------~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-  125 (330)
T 3hxj_A           61 IECRPSIGKDGTIYFGSDK--VYAINPD-GTEKW--------RFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-  125 (330)
T ss_dssp             EEECCEETTTTEECCSSCE--EEEECCC-GGGGG--------GSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-
T ss_pred             cccceEEecCCcEEEecCc--EEEECCC-CcEEE--------EEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-
Confidence            3466667666654443344  8888753 33221        111111112223333 4  567788889999999988 


Q ss_pred             CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccccccccc
Q 011368          286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  365 (487)
Q Consensus       286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  365 (487)
                      ++..    .....             ....+.++...+++.+++...++.|..+|..  +..+..+......+       
T Consensus       126 g~~~----~~~~~-------------~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~-------  179 (330)
T 3hxj_A          126 GTEK----WRFKT-------------KKAIYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWRFKTNDAIT-------  179 (330)
T ss_dssp             SCEE----EEEEC-------------SSCCCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEEEECSSCCC-------
T ss_pred             CCEE----EEEcC-------------CCceeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEEEecCCCce-------
Confidence            5432    11121             0234556677778876665556999999986  55555554332221       


Q ss_pred             CCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccce-e
Q 011368          366 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H  444 (487)
Q Consensus       366 ~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~  444 (487)
                              .++...+++.+++ ++  +.|..+| .+++ ...........+..+...+  ++.      +..+..++. .
T Consensus       180 --------~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~--~g~------l~v~t~~~gl~  238 (330)
T 3hxj_A          180 --------SAASIGKDGTIYF-GS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISE--DGT------IYVTSLDGHLY  238 (330)
T ss_dssp             --------SCCEECTTCCEEE-ES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECT--TSC------EEEEETTTEEE
T ss_pred             --------eeeEEcCCCEEEE-Ee--CEEEEEC-CCCc-EEEEEccCCcceeceEECC--CCe------EEEEcCCCeEE
Confidence                    3667777877554 44  7899999 6553 3444444445555555543  333      344444333 3


Q ss_pred             cCCC-CCccccccccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          445 ENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       445 ~w~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                      .+.. +............+..+...+++.+.+....++++.|+
T Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          239 AINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN  281 (330)
T ss_dssp             EECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred             EECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence            3322 22222211112222334555566555444444788775

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.52  E-value=0.00023  Score=64.01  Aligned_cols=203  Identities=10%  Similarity=0.086  Sum_probs=113.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .....++|  .+++.++++-..++.|..||..+.. ...                                         
T Consensus        32 ~~pegia~--~~~g~lyv~d~~~~~I~~~d~~g~~-~~~-----------------------------------------   67 (306)
T 2p4o_A           32 TFLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIH-----------------------------------------   67 (306)
T ss_dssp             CCEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEE-----------------------------------------
T ss_pred             CCcceEEE--CCCCCEEEEeCCCCeEEEECCCCce-EEE-----------------------------------------
Confidence            34678999  5678877776678889888876532 211                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             .........+++.++++++++. ...  .|..++..+ +....+...     . .......++..+.+ ..++
T Consensus        68 -------~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v  132 (306)
T 2p4o_A           68 -------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTL-----P-DAIFLNGITPLSDT-QYLT  132 (306)
T ss_dssp             -------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEEC-----T-TCSCEEEEEESSSS-EEEE
T ss_pred             -------EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEEEEEeC-----C-CccccCcccccCCC-cEEE
Confidence                   1112357889999999977665 332  466666653 333333221     1 11223445555554 4454


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCce-
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP-  347 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~-  347 (487)
                      +-..++.|..+|...+....   ..... .....   ...+.-.....+  +|++++|..++  .+.|..+++...+.. 
T Consensus       133 ~d~~~g~i~~~d~~~~~~~v---~~~~~-~~~~~---~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~  203 (306)
T 2p4o_A          133 ADSYRGAIWLIDVVQPSGSI---WLEHP-MLARS---NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG  203 (306)
T ss_dssp             EETTTTEEEEEETTTTEEEE---EEECG-GGSCS---STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred             EECCCCeEEEEeCCCCcEeE---EEECC-ccccc---cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC
Confidence            44468888888876542100   00000 00000   000001123445  78888877764  389999998642221 


Q ss_pred             -eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          348 -VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                       ...+.....+                ..++++++|+++++....+.|.+++..
T Consensus       204 ~~~~~~~~~~P----------------~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          204 EPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             CCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ccEEEeccCCC----------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence             1111111111                379999999887777777899999864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=0.00058  Score=70.24  Aligned_cols=248  Identities=10%  Similarity=0.014  Sum_probs=132.2

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEee-------cCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  276 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  276 (487)
                      ...|.++...++|.+.+....+-|.++|..... ......       .....-.-....|.++...++| . |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQ-FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCe-eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence            456899999888876665565678888887332 111100       0000011234579999999887 4 55667677


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccc
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      .|..++...+..     ..+.. ........  ......|.++...++|.+.+...++-|..||..+ + ....+.....
T Consensus       334 Gl~~~~~~~~~~-----~~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~  403 (781)
T 3v9f_A          334 GINFISNAPPTF-----HTWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENRE  403 (781)
T ss_dssp             CEEEECSSCCSC-----EEEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----
T ss_pred             eEEEeCCCCCcc-----eeecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCC
Confidence            788888776432     11211 00000000  0013568999999888766655457788898753 2 2222211000


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEec---cCCccccceEeeCCcccccccc
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GKNENRKPILQAAPRARRSSLS  433 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~  433 (487)
                      .           ....|.++...++|.+.+ |+.++-|..++..+++.  ..+..   ....+.++...  +++.+    
T Consensus       404 ~-----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d--~~g~l----  463 (781)
T 3v9f_A          404 L-----------LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYED--KNKKI----  463 (781)
T ss_dssp             C-----------CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEEC--TTSEE----
T ss_pred             C-----------CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEEC--CCCCE----
Confidence            0           011235888888887655 67667788898876632  22211   12333333332  24443    


Q ss_pred             ceeeecccceecCCCCC-cccccc------ccCCCeEEEEEcCCCCEEEEecCCeEEEEe
Q 011368          434 NLTRGLYRQAHENSSSG-HHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY  486 (487)
Q Consensus       434 ~l~~g~~~~~~~w~~~~-~~~~~~------~~~~~v~~~~~spd~~~la~~s~~~~~i~~  486 (487)
                        -.|...+...++... ......      .....|.++...++|.+.+....++++.|+
T Consensus       464 --wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~  521 (781)
T 3v9f_A          464 --WIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT  521 (781)
T ss_dssp             --EEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred             --EEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence              333334443332111 111111      114678999999999887766667888875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.50  E-value=0.00055  Score=63.69  Aligned_cols=199  Identities=12%  Similarity=0.049  Sum_probs=118.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+..++|.+ .++.++++-...+.|..+++.++....+.                                        
T Consensus       116 ~~~~gl~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~----------------------------------------  154 (386)
T 3v65_B          116 ENAIALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVV----------------------------------------  154 (386)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCEEEEE----------------------------------------
T ss_pred             CccEEEEEec-CCCeEEEEeCCCCcEEEEecCCCCcEEEE----------------------------------------
Confidence            4578899953 34455555557788888888766533321                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             .........+++.+.+..|+.+  ..+.|.+.+++. .....++       .........++++|.+ ..|+.
T Consensus       155 -------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~-------~~~l~~P~giavdp~~-g~ly~  218 (386)
T 3v65_B          155 -------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL-------WQSLEKPRAIALHPME-GTIYW  218 (386)
T ss_dssp             -------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEE-------CSSCSCEEEEEEETTT-TEEEE
T ss_pred             -------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEee-------cCCCCCCcEEEEEcCC-CeEEE
Confidence                   1222334678888765555554  677888888873 3222221       1223456899999976 45544


Q ss_pred             Ee-CC-CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCce
Q 011368          272 SS-SR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP  347 (487)
Q Consensus       272 ~~-~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~  347 (487)
                      +. .. +.|..+++......    .....             .-.....++++|++..|..++  .+.|..+|+.. ...
T Consensus       219 td~~~~~~I~r~~~dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~  280 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHR  280 (386)
T ss_dssp             EECSSSCEEEEEETTSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSC
T ss_pred             eccCCCCEEEEEeCCCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-Cee
Confidence            44 44 67888887654311    11111             023568999998888777765  38899999863 222


Q ss_pred             eeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          348 VATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       348 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ...+... ..+                ..+++. ++..+++-...+.|..++..+++.
T Consensus       281 ~~~~~~~~~~P----------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          281 KAVISQGLPHP----------------FAITVF-EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEEECSSCSSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEECCCCCc----------------eEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence            2222211 111                377773 455556666778898888666644

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.48  E-value=0.00046  Score=59.46  Aligned_cols=220  Identities=11%  Similarity=0.132  Sum_probs=128.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+..++|+|. ++.++++...++.|...|.. ++......                                       
T Consensus        27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~---------------------------------------   65 (255)
T 3qqz_A           27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIP---------------------------------------   65 (255)
T ss_dssp             SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEE---------------------------------------
T ss_pred             cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEe---------------------------------------
Confidence            67999999642 34455556778888888887 55443311                                       


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCc--eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             .........|++.+++.++++. .++.+.++++.....  .......+. .....+.....++|+|.+ +.|.
T Consensus        66 -------l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~  136 (255)
T 3qqz_A           66 -------LDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFW  136 (255)
T ss_dssp             -------CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEE
T ss_pred             -------cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEE
Confidence                   1223557788999989887887 889999999875553  122222111 012345567999999998 6777


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCcee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~  348 (487)
                      ++.+.....+|.+. +..-......... ....   .  ..+...+.+++++|....|..-+  ...+..+|..  ++.+
T Consensus       137 va~E~~p~~i~~~~-g~~~~~~l~i~~~-~~~~---~--~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~  207 (255)
T 3qqz_A          137 FFKEKNPIEVYKVN-GLLSSNELHISKD-KALQ---R--QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVI  207 (255)
T ss_dssp             EEEESSSEEEEEEE-STTCSSCCEEEEC-HHHH---H--TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEE
T ss_pred             EEECcCCceEEEEc-ccccCCceeeecc-hhhc---c--ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEE
Confidence            77665555666655 2100001121111 0000   0  01124578999999866555544  3889999975  5566


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      ..+......-..      ...+...-.++|.++|+. ...++.+.++++.-
T Consensus       208 ~~~~L~~g~~~l------~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~  251 (255)
T 3qqz_A          208 GEMSLTKGSRGL------SHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEEECSTTGGGC------SSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred             EEEEcCCccCCc------ccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence            555433211000      000111148999999984 44577777666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.48  E-value=0.00076  Score=61.77  Aligned_cols=200  Identities=13%  Similarity=0.057  Sum_probs=118.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+..++|.+ .++.++.+-...+.|..+++.++....+.                                        
T Consensus        73 ~~~~~l~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~----------------------------------------  111 (349)
T 3v64_C           73 ENAIALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVV----------------------------------------  111 (349)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEE----------------------------------------
T ss_pred             CceEEEEEec-cccEEEEEeccCCceEEEecCCCCceEEE----------------------------------------
Confidence            4578899953 34445555557788888888766533321                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             .........+++.+.+..|+.+  ..+.|.+.+++. .....++       .........++++|.+..++.+
T Consensus       112 -------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~-------~~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          112 -------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL-------WQSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             -------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE-------CTTCSCEEEEEEETTTTEEEEE
T ss_pred             -------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC-CceEEEE-------eCCCCCcceEEEecCcCeEEEe
Confidence                   1222345678888755555444  678999999873 3222221       1223456899999966244444


Q ss_pred             EeCC-CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCcee
Q 011368          272 SSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV  348 (487)
Q Consensus       272 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~  348 (487)
                      -... +.|..+++.....     ..+-.            ..-.....++++|++..|..++.  +.|..+|+.. ....
T Consensus       177 d~~~~~~I~r~~~dG~~~-----~~~~~------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~  238 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSGR-----RIIAD------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRK  238 (349)
T ss_dssp             ECSSSCEEEEEETTSCSC-----EESCC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCE
T ss_pred             ccCCCCEEEEEeCCCCCc-----EEEEE------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceE
Confidence            4444 7888888765321     11111            00235689999998887777653  8899999863 2222


Q ss_pred             eeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          349 ATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       349 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ..+... ..+                ..+++. ++...++-...+.|..++..+++.
T Consensus       239 ~~~~~~~~~P----------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          239 AVISQGLPHP----------------FAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EEECSSCSSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEeCCCCCc----------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence            222211 111                377773 455555666678888888666644

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.45  E-value=7.7e-05  Score=63.91  Aligned_cols=197  Identities=11%  Similarity=0.065  Sum_probs=113.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      .-...+.|  + ++.++.+.+.+|  .|+++|+.+++........                                   
T Consensus        43 ~ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----------------------------------   84 (262)
T 3nol_A           43 AFTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----------------------------------   84 (262)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------------------------
T ss_pred             cccceEEE--E-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------------------------
Confidence            34578888  3 566677777665  8999999999876553211                                   


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                                . ...-..++.  ++..|.. . .++.+.+||.++.. .+..+.     ..+..     ..+.+++ ..|
T Consensus        85 ----------~-~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~-~~~ti~-----~~~eG-----~glt~dg-~~L  139 (262)
T 3nol_A           85 ----------K-RYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR-QVRSFN-----YDGEG-----WGLTHND-QYL  139 (262)
T ss_dssp             ----------T-TCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC-EEEEEE-----CSSCC-----CCEEECS-SCE
T ss_pred             ----------C-ccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc-EEEEEE-----CCCCc-----eEEecCC-CEE
Confidence                      1 111122333  3444444 4 89999999998544 444332     12211     2333566 666


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      +.+..++.|.++|..+.+..    ..+... ...       ..-..++.+.|. +|+..+..- ++.|.+.|.++ ++.+
T Consensus       140 ~~SdGs~~i~~iDp~T~~v~----~~I~V~-~~g-------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t-G~V~  205 (262)
T 3nol_A          140 IMSDGTPVLRFLDPESLTPV----RTITVT-AHG-------EELPELNELEWV-DGEIFANVWQTNKIVRIDPET-GKVT  205 (262)
T ss_dssp             EECCSSSEEEEECTTTCSEE----EEEECE-ETT-------EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT-CBEE
T ss_pred             EEECCCCeEEEEcCCCCeEE----EEEEec-cCC-------ccccccceeEEE-CCEEEEEEccCCeEEEEECCC-CcEE
Confidence            66666788999999987654    332220 000       001234567776 676544443 48999999997 8888


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  390 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~  390 (487)
                      ..+....-...........+..   +.++++|+++.|.+.+.
T Consensus       206 ~~Id~~~L~~~~~~~~~~~~vl---NGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          206 GIIDLNGILAEAGPLPSPIDVL---NGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEECTTGGGGSCSCCSSCCCE---EEEEEETTTTEEEEEET
T ss_pred             EEEECCcCccccccccCcCCce---EEEEEcCCCCEEEEECC
Confidence            7776542110000000011122   58999998877776665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.44  E-value=7.7e-05  Score=63.92  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=95.5

Q ss_pred             CceeEEEeCCCCCEEEEe-cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          205 FNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      .....+.|+ ++.++.++ .+|  .|+.+|+++++ ....+.+     ... ..-..++.  .+..+.+..-.++.+.+|
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-v~~~~~l-----~~~-~FgeGit~--~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-TLQQIEL-----GKR-YFGEGISD--WKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-EEEEEEC-----CTT-CCEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCc-EEEEEec-----CCc-cceeEEEE--eCCEEEEEEeeCCEEEEE
Confidence            345788888 66665665 555  99999999554 4443322     111 11123444  341444444468899999


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccc
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK  360 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~  360 (487)
                      |..+.+..    ..+..              ..  ....+++|++.|+.++ .+.|.++|..+ .+.+..+.......+ 
T Consensus       113 D~~t~~~~----~ti~~--------------~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~-  170 (262)
T 3nol_A          113 NIRNLRQV----RSFNY--------------DG--EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE-  170 (262)
T ss_dssp             ETTTCCEE----EEEEC--------------SS--CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE-
T ss_pred             ECccCcEE----EEEEC--------------CC--CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc-
Confidence            99998755    44443              11  2223345677776654 48899999987 777777665432110 


Q ss_pred             cccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          361 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                               +.....+.|. +|+..+..-.++.|.+.|.++++
T Consensus       171 ---------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~  203 (262)
T 3nol_A          171 ---------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGK  203 (262)
T ss_dssp             ---------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred             ---------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence                     0011357776 77655555567899999999884

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.42  E-value=7.8e-05  Score=74.87  Aligned_cols=185  Identities=15%  Similarity=0.140  Sum_probs=103.0

Q ss_pred             eEEEeCCCCCEEEEe-cCC-------------------eEEEEEccCCCceeEEeecCCCCCCC--CCCcEEEEEEecCC
Q 011368          208 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY  265 (487)
Q Consensus       208 ~~i~~s~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~  265 (487)
                      ..+++.|+..+++.+ .++                   .|..+|.++++.....- ..+...-.  .........+..+|
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~-~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ-VTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee-cCCCccccccCCCCcEEEEeccCC
Confidence            456788877788777 655                   48899998666555431 11100000  11223333333455


Q ss_pred             CC---EEEEEeCCCeEEEEEccCCccccccce---eeccccc----ccCc--c--------ccccccc--cceeEEEEcC
Q 011368          266 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SHGS--K--------SFFTEII--ASISDIKFAN  323 (487)
Q Consensus       266 ~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~h~~----~~~~--~--------~~~~~~~--~~v~~v~~s~  323 (487)
                       +   .++.++.+|.+.++|.++++.+.....   .+.....    .+..  .        ..+++..  ..-..++++|
T Consensus       312 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp  390 (668)
T 1kv9_A          312 -KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP  390 (668)
T ss_dssp             -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             -cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence             4   688899999999999999986521000   0000000    0000  0        0000000  0012366777


Q ss_pred             CCCEEEEE------------------------------------e-CCeEEEEeCCCCCceeeeeecccccccccccccC
Q 011368          324 DGQHLLSR------------------------------------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  366 (487)
Q Consensus       324 ~~~~l~s~------------------------------------~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (487)
                      +...++..                                    . +|.|..||+.+ ++.+.........         
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~---------  460 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW---------  460 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC---------
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC---------
Confidence            76655431                                    1 27789999987 7777666543321         


Q ss_pred             CCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          367 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       367 ~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                             ....+...+.++++++.||.++.||.++++. +..++..
T Consensus       461 -------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~-l~~~~~~  498 (668)
T 1kv9_A          461 -------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQ  498 (668)
T ss_dssp             -------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred             -------cCceeEeCCCEEEEECCcccchhhhhhcChh-heEecCC
Confidence                   1233444677889999999999999999854 4455444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.39  E-value=6.6e-05  Score=64.32  Aligned_cols=197  Identities=9%  Similarity=0.025  Sum_probs=114.7

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .-...+.|.   ++.++.+.+.+|.|+++|+.+++..... .                                      
T Consensus        55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--------------------------------------   92 (268)
T 3nok_A           55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-R--------------------------------------   92 (268)
T ss_dssp             CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-E--------------------------------------
T ss_pred             cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--------------------------------------
Confidence            345788883   4677777888899999999999866542 1                                      


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                             .. ...-..+++.. +++.+.. .++.+.+||.++. +.+..+.     ..+..   +.++  +++ ..|+.+
T Consensus        93 -------~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl-~~~~ti~-----~~~eG---wGLt--~Dg-~~L~vS  151 (268)
T 3nok_A           93 -------LG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP-QRERTTR-----YSGEG---WGLC--YWN-GKLVRS  151 (268)
T ss_dssp             -------CT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTT-EEEEEEE-----CSSCC---CCEE--EET-TEEEEE
T ss_pred             -------CC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcC-cEEEEEe-----CCCce---eEEe--cCC-CEEEEE
Confidence                   11 11112344442 3444445 8999999999954 4444432     12221   3333  567 677777


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~  351 (487)
                      ..++.|.++|..+.+..    ..+.. ...+       ..-..++.+.|. +|+..+... .+.|.+.|.++ ++.+..+
T Consensus       152 dGs~~l~~iDp~T~~v~----~~I~V-~~~g-------~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T-G~V~~~I  217 (268)
T 3nok_A          152 DGGTMLTFHEPDGFALV----GAVQV-KLRG-------QPVELINELECA-NGVIYANIWHSSDVLEIDPAT-GTVVGVI  217 (268)
T ss_dssp             CSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT-CBEEEEE
T ss_pred             CCCCEEEEEcCCCCeEE----EEEEe-CCCC-------cccccccccEEe-CCEEEEEECCCCeEEEEeCCC-CcEEEEE
Confidence            77899999999987654    33332 0000       001245667777 775444443 48999999997 8888777


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  389 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~  389 (487)
                      ....-...........+...  +.++++|+++.|...+
T Consensus       218 dl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          218 DASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred             ECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence            65421100000000011111  5899999766555444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.39  E-value=0.00028  Score=59.94  Aligned_cols=210  Identities=9%  Similarity=0.049  Sum_probs=120.1

Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCC--CcEEEEEccccceeEeeecCCCCceeeeecc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (487)
                      .++.+.++ .|.+.          .-...+.|+   ++.++.+.+.+  ..|+.+|+.+++........           
T Consensus         8 ~~~v~~~~-phd~~----------~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-----------   62 (243)
T 3mbr_X            8 GYRVVKRY-PHDTT----------AFTEGLFYL---RGHLYESTGETGRSSVRKVDLETGRILQRAEVP-----------   62 (243)
T ss_dssp             CEEEEEEE-ECCTT----------CCEEEEEEE---TTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-----------
T ss_pred             ceEEEEEc-CCCCc----------cccccEEEE---CCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-----------
Confidence            44556666 56533          557789994   35666666654  48999999999876653211           


Q ss_pred             ccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCC
Q 011368          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  246 (487)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  246 (487)
                                                        .+ ..-..++.. ++++.+.. .++.+.+||.++. +.+..+.   
T Consensus        63 ----------------------------------~~-~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl-~~~~ti~---  102 (243)
T 3mbr_X           63 ----------------------------------PP-YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATL-TPRARFR---  102 (243)
T ss_dssp             ----------------------------------TT-CCEEEEEEE-TTEEEEEESSSSEEEEEETTTT-EEEEEEE---
T ss_pred             ----------------------------------CC-cceeEEEEe-CCEEEEEEeeCCEEEEEECCcC-cEEEEEe---
Confidence                                              11 011223333 23344445 8999999999854 4444432   


Q ss_pred             CCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368          247 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  326 (487)
Q Consensus       247 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~  326 (487)
                        ..+.   -..++  +++ ..|+.+..++.|.++|..+.+..    ..+.. ...+.       --..++.+.+. +|+
T Consensus       103 --~~~~---Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~-------~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X          103 --YPGE---GWALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGR-------PLDNLNELEWV-NGE  161 (243)
T ss_dssp             --CSSC---CCEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------ECCCEEEEEEE-TTE
T ss_pred             --CCCC---ceEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCc-------ccccceeeEEe-CCE
Confidence              1121   13343  566 56666667889999999987654    33332 00000       01245566665 666


Q ss_pred             EEEEE-eCCeEEEEeCCCCCceeeeeeccccccccccc--ccCCCCcceeeEEEEcCCCCEEEEEcC
Q 011368          327 HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSY  390 (487)
Q Consensus       327 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~d~~~l~sg~~  390 (487)
                      ..+.. ....|.+.|.++ ++.+..+....-... ...  ....+..   +.++++|+++.|...+.
T Consensus       162 lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~-~~~~~~~~~~vl---NGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPAS-GKVVAWIDLQALVPD-ADALTDSTNDVL---NGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEECTTT-CBEEEEEECGGGSTT-TTSCCCTTSSCE---EEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCeEEEEECCC-CCEEEEEECCcCccc-cccccCCcCCce---EEEEEcCCCCEEEEECC
Confidence            55444 348999999997 888877765432100 000  0011122   58999998776665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.38  E-value=0.00036  Score=60.11  Aligned_cols=218  Identities=11%  Similarity=0.137  Sum_probs=123.1

Q ss_pred             CcEEEEEEcCCCCEEE-EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee--cCCCcccccccc
Q 011368           33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS  109 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~  109 (487)
                      +.+..++++|++..|+ +...++.|...|.. ++.                           ...+  .+.         
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------------------------~~~i~l~g~---------   69 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------------------------IRTIPLDFV---------   69 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------------------------EEEEECSSC---------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------------------------EEEEecCCC---------
Confidence            4699999999876554 56677777777765 332                           1222  221         


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeE-eeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                          .....|++  .+++.++++.-.++.+.++++....... ......                               
T Consensus        70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~-------------------------------  112 (255)
T 3qqz_A           70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI-------------------------------  112 (255)
T ss_dssp             ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC-------------------------------
T ss_pred             ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc-------------------------------
Confidence                34677888  4677666666677889998886544211 110000                               


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccC--CCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                              .............++|+|.++.|.++ ......+|.++.  ....+.+.+.+...-......+.+++++|..
T Consensus       113 --------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          113 --------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             --------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             --------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence                    00002345668999999998777776 444445555441  1122333211000001122346889999987


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  341 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~  341 (487)
                      ..+++.+..++.|.++|.... ..    ..+.....    ..-+..--..-..|+|.++|++.+++.-+.++.+.-
T Consensus       185 g~lliLS~~s~~L~~~d~~g~-~~----~~~~L~~g----~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLVGE-VI----GEMSLTKG----SRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             TEEEEEETTTTEEEEECTTCC-EE----EEEECSTT----GGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             CeEEEEECCCCeEEEEcCCCC-EE----EEEEcCCc----cCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            466666667788999997653 22    22221000    000000123568899999999777765476666653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.38  E-value=5.8e-05  Score=64.68  Aligned_cols=157  Identities=11%  Similarity=-0.018  Sum_probs=97.7

Q ss_pred             CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      ......+.|+ ++.++.+. .++.|+.+|+++++....+  +.     . ...-..+++  .+..+.+..-.++.+.+||
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-----~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RL-----G-NIFAEGLAS--DGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--EC-----T-TCCEEEEEE--CSSCEEEEESSSCEEEEEE
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CC-----C-CcceeEEEE--eCCEEEEEEccCCEEEEEE
Confidence            3445788887 34555555 8889999999965543332  22     1 111123444  3425555555789999999


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      ..+.+.+    ..+..              ...-..++  +|++.|+.++ ++.|.++|..+ .+.+..+.......+  
T Consensus       123 ~~Tl~~~----~ti~~--------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~--  179 (268)
T 3nok_A          123 GMPPQRE----RTTRY--------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP--  179 (268)
T ss_dssp             TTTTEEE----EEEEC--------------SSCCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE--
T ss_pred             CCcCcEE----EEEeC--------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc--
Confidence            9998765    44443              11113333  5677777664 59999999987 777777765443221  


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                              +...+.+.|. +|+..+..-.++.|.+.|.++++
T Consensus       180 --------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          180 --------VELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             --------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             --------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence                    1111467777 77655555567899999999884

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.36  E-value=0.00029  Score=71.87  Aligned_cols=158  Identities=12%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             cEEEEEEc-CCCCEEEEEec-CC----cEEEEEeeCC-cCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           34 IVSAIEFD-KTGDYLAVGDR-GG----RVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        34 ~V~~~~~s-~~~~~l~~g~~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      .+...+|| |||++||.+.. +|    +|+++|+.++ +..                              ..+-     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------------------------------~~~~-----  219 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------------------------------ADKV-----  219 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------------------------------CCCE-----
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------------------------------Cccc-----
Confidence            57889999 99999886543 23    4999998877 531                              0000     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCC-----cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCC
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                            +.....++|  +|||+.|+....|.     .|.++++.++.....                             
T Consensus       220 ------~~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-----------------------------  262 (751)
T 2xe4_A          220 ------SGTNGEIVW--GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV-----------------------------  262 (751)
T ss_dssp             ------EEECSCCEE--CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE-----------------------------
T ss_pred             ------cCceeeEEE--ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE-----------------------------
Confidence                  022346789  67888887776542     466666655431100                             


Q ss_pred             cceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe----cCCeEEEEEccCCCcee--EEeecCCCCCCCCCCc
Q 011368          182 FAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCF--NIVDMKPSNMDDLTEV  255 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~  255 (487)
                                     ..+-.........+.|+|||++|+..    ....|+++|+.++....  ..+      .......
T Consensus       263 ---------------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~  321 (751)
T 2xe4_A          263 ---------------CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV------RPREKGV  321 (751)
T ss_dssp             ---------------EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES------SCCCTTC
T ss_pred             ---------------EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe------ecCCCCc
Confidence                           00101222345678999999988774    24568888887542222  221      1223344


Q ss_pred             EEEEEEecCCCCEEEEEeCC--C--eEEEEEccC
Q 011368          256 ITSAEFHPIYCNLLAYSSSR--G--FVRLVDMRQ  285 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~d--g--~i~iwd~~~  285 (487)
                      ..++.|+..+ .+++....+  +  .|..+|+.+
T Consensus       322 ~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          322 RYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CEEEEEETTT-EEEEEECTTTCTTCEEEEEETTS
T ss_pred             eEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCC
Confidence            5566655443 444444443  2  566666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.35  E-value=0.0003  Score=59.74  Aligned_cols=158  Identities=12%  Similarity=0.028  Sum_probs=95.7

Q ss_pred             CCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEE
Q 011368          204 DFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  280 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  280 (487)
                      ......+.|++ +.++.+. .  .+.|+.+|+.+++ ....+.+     ..+. .-..++..  +..+....-.++.+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l-----~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-ILQRAEV-----PPPY-FGAGIVAW--RDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-EEEEEEC-----CTTC-CEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-EEEEEeC-----CCCc-ceeEEEEe--CCEEEEEEeeCCEEEE
Confidence            34466889986 5555554 4  3599999999554 4443322     2211 11234443  3145555556899999


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccccccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP  359 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~  359 (487)
                      ||..+.+.+    ..+..              ...-..++  ++++.|+.++ ++.|.++|..+ .+.+..+.......+
T Consensus        90 ~D~~tl~~~----~ti~~--------------~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           90 YDLATLTPR----ARFRY--------------PGEGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRP  148 (243)
T ss_dssp             EETTTTEEE----EEEEC--------------SSCCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEE
T ss_pred             EECCcCcEE----EEEeC--------------CCCceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcc
Confidence            999997755    44443              11113443  5666666553 58999999987 777777765432211


Q ss_pred             ccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          360 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                                +...+.+.+. +|+..+..-.+..|.+.|.++++
T Consensus       149 ----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~  181 (243)
T 3mbr_X          149 ----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGK  181 (243)
T ss_dssp             ----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred             ----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence                      1111366666 67655555467799999999984

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.0045  Score=63.61  Aligned_cols=340  Identities=10%  Similarity=0.057  Sum_probs=175.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (487)
                      ..|.++...++|.+.+. ..+ -+.+||..+++..                            .+......   ...+ .
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~----------------------------~~~~~~~~---~~~l-~  256 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFT----------------------------NFHNNPGN---IHGA-L  256 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEE----------------------------C---------------C
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEE----------------------------EEEcCCCc---cccc-c
Confidence            46899999888876654 444 5888886554321                            01000000   0000 0


Q ss_pred             ccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       113 ~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ...|.++..  ..+|. |..|+..+-|.+++..++............                              +  
T Consensus       257 ~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~------------------------------~--  301 (781)
T 3v9f_A          257 SSYIFSIKQ--LKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEF------------------------------I--  301 (781)
T ss_dssp             CCCEEEEEE--CTTSE-EEEEESSSCEEEEETTCC---------CEE------------------------------E--
T ss_pred             CceEEEEEE--CCCCC-EEEEeCCCCeEEECCCCCeeeeeecccccc------------------------------c--
Confidence            156888887  45554 556666456888888776543321100000                              0  


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCC---CCCCCCCcEEEEEEecCCCCEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                       ........-....|.++...++|.+-+...++-|..++.... . +..+...+.   .-.-....|.++...++| . |
T Consensus       302 -~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-l  376 (781)
T 3v9f_A          302 -REGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPP-T-FHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-L  376 (781)
T ss_dssp             -CBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCC-S-CEEEC----CCCSSCCSSSCEEEEEECTTS-C-E
T ss_pred             -cCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCC-c-ceeeccCccccccCCCCCcceEEEEEcCCC-C-E
Confidence             000000012345689999998887666557778888887632 2 222211000   011123569999988887 4 5


Q ss_pred             EEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368          270 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~  349 (487)
                      ..|+.++.|..||..++...     .+..    +.     ......|.++...++|.+.+...++.|..+|..+ ++ ..
T Consensus       377 Wigt~~~Gl~~~~~~~~~~~-----~~~~----~~-----~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~  440 (781)
T 3v9f_A          377 WIGTDGGGINVFENGKRVAI-----YNKE----NR-----ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQ  440 (781)
T ss_dssp             EEEEBSSCEEEEETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EE
T ss_pred             EEEeCCCcEEEEECCCCeEE-----EccC----CC-----CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EE
Confidence            56666666888988764321     1110    00     0113578999988888766644447788898865 33 22


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc-----CCccccceEeeC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAA  424 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~  424 (487)
                      .+.....            ....|.++...++|.+.+ |+. +-|..|+..+++..... ...     ...+.++...  
T Consensus       441 ~~~~~~~------------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d--  503 (781)
T 3v9f_A          441 IIELEKN------------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHY-DTSNSQLLENFVRSIAQD--  503 (781)
T ss_dssp             ECCSTTT------------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEE-CTTTSSCSCSCEEEEEEC--
T ss_pred             EeccCCC------------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecc-cCcccccccceeEEEEEc--
Confidence            2221100            001235788888887555 444 56888998876432221 111     1233333322  


Q ss_pred             Cccccccccceeeecc-cceecCCCCC-cccccc---c-cCCCeEEEEEcCCCCEEEEecCCeE-EEEe
Q 011368          425 PRARRSSLSNLTRGLY-RQAHENSSSG-HHELSY---N-LSSKLLHLAWHPTTNLIACANGNSL-FFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~-~~~~~w~~~~-~~~~~~---~-~~~~v~~~~~spd~~~la~~s~~~~-~i~~  486 (487)
                      .++.+      -.|.. .+...+.... ......   + ....|.++...++|.+.+... +++ +.|.
T Consensus       504 ~~g~l------Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          504 SEGRF------WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             TTCCE------EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             CCCCE------EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            24433      33333 3333332211 111111   1 235788999999998766555 777 7764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=0.00093  Score=63.11  Aligned_cols=184  Identities=9%  Similarity=0.064  Sum_probs=91.3

Q ss_pred             ceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE-EEEeCCCeEEEEE
Q 011368          206 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVD  282 (487)
Q Consensus       206 ~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd  282 (487)
                      ....++++| ++.++++- .++.|..++... .....+..     ... ......++|+|+| ++| ++-...+.|..++
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~-----~~~-~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFT-----IQD-SGWEFHIQFHPSG-NYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEE-----CSS-SSCCEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEE-----cCC-CCcceeEEEcCCC-CEEEEEECCCCEEEEEe
Confidence            356788999 67766666 888999999873 33212211     111 2346789999999 744 4445678899988


Q ss_pred             ccCCccccccceeecccccccCccc-c-cccccccee-EEEEc--------CCCCEEEEEe-CCeEEEEeCCCCCceeee
Q 011368          283 MRQSALCDHSARILRDAAESHGSKS-F-FTEIIASIS-DIKFA--------NDGQHLLSRD-YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~-~-~~~~~~~v~-~v~~s--------~~~~~l~s~~-d~~i~iwd~~~~~~~~~~  350 (487)
                      .............+.+......... . ....-.... .++..        ++|.+.++-. .+.|+.++..  +. +..
T Consensus       299 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~--G~-v~~  375 (430)
T 3tc9_A          299 YDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ--GR-VTT  375 (430)
T ss_dssp             EETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT--SE-EEE
T ss_pred             CCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC--Cc-EEE
Confidence            7642100001122222000000000 0 000011223 45553        3354444433 3788888842  43 333


Q ss_pred             eecccc-ccccccc--ccCCCCcceeeEEEEcC-CCCEEEEEcCCCcEEEEEeC
Q 011368          351 FKIHEH-LRPKLCD--LYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       351 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~s~-d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +.+... ......+  ............++++| ++.++++-..++.|+.++++
T Consensus       376 ~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          376 FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            322200 0000000  00000112236899999 46666666677888888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.30  E-value=0.00024  Score=69.81  Aligned_cols=61  Identities=8%  Similarity=-0.026  Sum_probs=39.6

Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      +.|..||+.+ ++.+..+.......                ...+...+..++.++.||.|+.+|.++++. +..++..
T Consensus       444 g~l~a~D~~t-G~~~W~~~~~~~~~----------------~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~~~  504 (571)
T 2ad6_A          444 GQIRAFDLTT-GKAKWTKWEKFAAW----------------GGTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMP  504 (571)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCCC----------------SBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred             CeEEEEECCC-CCEEEEecCCCCcc----------------ceeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEeCC
Confidence            6788888886 66666655332211                222223456777899999999999999855 4444433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.26  E-value=0.0015  Score=61.62  Aligned_cols=184  Identities=10%  Similarity=0.036  Sum_probs=95.2

Q ss_pred             CceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE-EeCCCeEEEE
Q 011368          205 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLV  281 (487)
Q Consensus       205 ~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~iw  281 (487)
                      .....++++| ++.++++- .++.|+.++..++.....+...      +.......++|+|++ +.|+. -...+.|+.+
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence            3456788999 67666666 7889999988733321222211      111223579999999 74544 4557889998


Q ss_pred             EccC--CccccccceeecccccccCccc--cccccccceeEEEE---------cCCCCEEEEEeC-CeEEEEeCCCCCce
Q 011368          282 DMRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP  347 (487)
Q Consensus       282 d~~~--~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~v~~---------s~~~~~l~s~~d-~~i~iwd~~~~~~~  347 (487)
                      +...  +...  ....+.+.........  .....-.....+++         .++|.++++-.. +.|+.++..  + .
T Consensus       301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~  375 (433)
T 4hw6_A          301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-R  375 (433)
T ss_dssp             EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-E
T ss_pred             eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-C
Confidence            8763  2211  0112222000000000  00001124567888         666665555433 889998852  4 3


Q ss_pred             eeeeeccccc-cccccc--ccCCCCcceeeEEEEc-CCCCEEEEEcCCCcEEEEEeC
Q 011368          348 VATFKIHEHL-RPKLCD--LYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       348 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~s-~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +..+.+.... .....+  ............++++ ++|.++++-..++.|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            3333322110 000000  0000111223689999 677777766777888888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.19  E-value=0.0012  Score=59.72  Aligned_cols=215  Identities=9%  Similarity=0.016  Sum_probs=117.8

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      ...+++|  .+++.++.++..++.|..|+..++............            .. ..+. .             .
T Consensus        20 ~p~~i~~--d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~------------~~-~~~~-g-------------~   70 (322)
T 2fp8_A           20 APNSFTF--DSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW------------NK-AFCE-N-------------S   70 (322)
T ss_dssp             CCCCEEC--CTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTC------------CH-HHHT-T-------------C
T ss_pred             CceEEEE--cCCCCEEEEEcCCCeEEEECCCCCceEEEecccccc------------cc-cccc-c-------------c
Confidence            3566888  567887888888899999988766543321100000            00 0000 0             0


Q ss_pred             eeeeecccCCCceeEEEeCC-CCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEec-CCCCEEEE
Q 011368          195 ATKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHP-IYCNLLAY  271 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p-~~~~~l~~  271 (487)
                      .... ..........+++.+ +++++++...+.|..+|... +. ++.+..   ...+ .......+++.+ +| .+.++
T Consensus        71 ~~~~-~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~-g~-~~~~~~---~~~~~~~~~p~~i~~d~~~G-~l~v~  143 (322)
T 2fp8_A           71 TDAE-KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG-GH-ATQLAT---SVDGVPFKWLYAVTVDQRTG-IVYFT  143 (322)
T ss_dssp             CCGG-GHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC-EE-CEEEES---EETTEECSCEEEEEECTTTC-CEEEE
T ss_pred             cchh-ccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC-CE-EEEecc---cCCCCcccccceEEEecCCC-EEEEE
Confidence            0000 001123478899997 66555554555588888662 22 222100   0111 123468899999 88 76666


Q ss_pred             EeC-----------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--
Q 011368          272 SSS-----------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  332 (487)
Q Consensus       272 ~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--  332 (487)
                      ...                 ++.|..+|..+++..    .....              -.....++++|+|+.|..++  
T Consensus       144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~----~~~~~--------------~~~p~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT----LLLKE--------------LHVPGGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE----EEEEE--------------ESCCCEEEECTTSSEEEEEEGG
T ss_pred             CCcccccccccceehcccCCCceEEEEeCCCCEEE----EeccC--------------CccCcceEECCCCCEEEEEeCC
Confidence            432                 367888887665421    11111              12456799999999777664  


Q ss_pred             CCeEEEEeCCCCC-ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC----------CCcEEEEEe
Q 011368          333 YMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSH  399 (487)
Q Consensus       333 d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~----------dg~i~iwd~  399 (487)
                      .+.|.+|++.... .....+.....+                ..++++++|++.++...          .+.|..+|.
T Consensus       206 ~~~I~~~~~~~~~~~~~~~~~~~~gP----------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          206 SHQIVKYWLEGPKKGTAEVLVKIPNP----------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             GTEEEEEESSSTTTTCEEEEEECSSE----------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             CCeEEEEECCCCcCCccceEEeCCCC----------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence            3899999986411 111111111111                47999999987666544          355666665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.15  E-value=0.00029  Score=71.93  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=73.4

Q ss_pred             cCCC-ceeEEEeC-CCCCEEEEe-c-CC----eEEEEEccCC-CceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          202 AHDF-NINSISNN-SDCETFVSA-D-DL----RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       202 ~~~~-~v~~i~~s-~~~~~l~s~-~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                      +|.. .+...+|| |||++|+.+ . +|    .|+++|+.++ ....       ..+.   .....++|+|+| +.|+..
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------~~~~---~~~~~~~WspDg-~~l~y~  238 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------DKVS---GTNGEIVWGPDH-TSLFYV  238 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------CCEE---EECSCCEECSST-TEEEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------cccc---CceeeEEEecCC-CEEEEE
Confidence            3443 67889999 999999875 2 33    4999999855 3111       0111   112467899999 777776


Q ss_pred             eCC-----CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----CCeEEEEeCCC
Q 011368          273 SSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRM  343 (487)
Q Consensus       273 ~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d~~i~iwd~~~  343 (487)
                      ..+     ..|.++++.++....  ..++..            ........+.|+|||++|+...    ...|+++|+..
T Consensus       239 ~~d~~~~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          239 TKDETLRENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EECTTCCEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EECCCCCCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            654     257777776653211  122221            0123456789999999988643    26788899875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.14  E-value=0.0016  Score=65.42  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             EEEEecCCCCEEEEEeCCC-------------------eEEEEEccCCccccccceeecccccccCccccccccccceeE
Q 011368          258 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  318 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  318 (487)
                      .++++|.. ..++.++.++                   .|.-+|.++++..    -.++.  . +.....+. ...+...
T Consensus       234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~----W~~~~--~-~~~~wd~~-~~~~~~~  304 (668)
T 1kv9_A          234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA----WHYQV--T-PGDSWDFT-ATQQITL  304 (668)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE----EEEES--S-TTCCSCCC-CCSCEEE
T ss_pred             ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee----eEeec--C-CCcccccc-CCCCcEE
Confidence            47888887 7888887766                   3889999998743    22221  0 00000000 0112222


Q ss_pred             EEEcCCCC---EEEEEe-CCeEEEEeCCCCCceeeee
Q 011368          319 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       319 v~~s~~~~---~l~s~~-d~~i~iwd~~~~~~~~~~~  351 (487)
                      ..+..+|+   .++.++ +|.++++|..+ ++.+...
T Consensus       305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~  340 (668)
T 1kv9_A          305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE  340 (668)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred             EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence            22333665   566665 59999999987 7776443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.12  E-value=0.00063  Score=68.33  Aligned_cols=34  Identities=12%  Similarity=0.161  Sum_probs=24.7

Q ss_pred             eEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEe
Q 011368          117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKI  152 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~  152 (487)
                      .++++  ..++++++.|+ .+..+.+||..+++....
T Consensus       246 ~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~  280 (656)
T 1k3i_A          246 PGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPG  280 (656)
T ss_dssp             CEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEEC
T ss_pred             ccccC--CCCCCEEEeCCCCCCceEEecCcCCceeEC
Confidence            34555  46888888887 456899999988765543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.07  E-value=0.0011  Score=65.21  Aligned_cols=31  Identities=13%  Similarity=0.079  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          381 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       381 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      .+..++.++.||.++.||.++|+. +..++..
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~-lW~~~l~  513 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDL-LWKFKIP  513 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCCE-EEEeeCC
Confidence            566777899999999999999965 4444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.05  E-value=0.0016  Score=65.42  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=48.5

Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CC-----C
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----G  276 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-----g  276 (487)
                      ....++++..++++++.|  .+..+.+||..+.  ....+    ..+...... .+++..+++ ++++.|+ .+     .
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~----~~~~~~R~~-~s~~~~~dg-~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPG----PDMQVARGY-QSSATMSDG-RVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEEC----CCCSSCCSS-CEEEECTTS-CEEEECCCCCSSSCCC
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCC--ceeEC----CCCCccccc-cceEEecCC-eEEEEeCcccCCcccc
Confidence            334457788899999997  5678999999843  22221    112221111 345566788 8888888 34     4


Q ss_pred             eEEEEEccCCc
Q 011368          277 FVRLVDMRQSA  287 (487)
Q Consensus       277 ~i~iwd~~~~~  287 (487)
                      .+.+||..+++
T Consensus       315 ~~e~yd~~t~~  325 (656)
T 1k3i_A          315 NGEVYSPSSKT  325 (656)
T ss_dssp             CEEEEETTTTE
T ss_pred             cceEeCCCCCc
Confidence            68999998764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.01  E-value=0.0015  Score=64.21  Aligned_cols=62  Identities=19%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      |.|..||+.+ ++.+..........                .-.....+.+++.|+.||.++.||.++|+. +..++...
T Consensus       466 G~l~A~D~~t-G~~~W~~~~~~~~~----------------~g~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~~  527 (582)
T 1flg_A          466 GSLRAMDPVS-GKVVWEHKEHLPLW----------------AGVLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGS  527 (582)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCCC----------------SCCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSS
T ss_pred             ceEEEEECCC-CCEEEEecCCCCCc----------------ccceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCCC
Confidence            7788899887 77666655332110                111112466788899999999999999955 44555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.96  E-value=0.012  Score=55.46  Aligned_cols=210  Identities=10%  Similarity=-0.012  Sum_probs=112.7

Q ss_pred             ceeEEEEEecCC--CcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          115 KINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       115 ~I~~v~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ....|+|.  ++  +..|..+...+.|+.++..++....+                                        
T Consensus       140 ~P~gvavd--~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~----------------------------------------  177 (433)
T 4hw6_A          140 NIWRMMFD--PNSNYDDLYWVGQRDAFRHVDFVNQYVDIK----------------------------------------  177 (433)
T ss_dssp             CCCEEEEC--TTTTTCEEEEECBTSCEEEEETTTTEEEEE----------------------------------------
T ss_pred             CCceEEEc--cccCCCEEEEEeCCCCEEEEECCCCEEEEe----------------------------------------
Confidence            45688884  42  33444443338888888877765443                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEecCC-----eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSADDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC  266 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~  266 (487)
                              .........++++++|+++++...+     .+...+..........+       . .......++++| ++ 
T Consensus       178 --------~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-------~-~~~~P~giavd~~~G-  240 (433)
T 4hw6_A          178 --------TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL-------C-NARGAKTCAVHPQNG-  240 (433)
T ss_dssp             --------CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE-------E-ECSSBCCCEECTTTC-
T ss_pred             --------ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc-------c-ccCCCCEEEEeCCCC-
Confidence                    2234457899999999955554321     23333332111100110       1 123346688999 66 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD  344 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~  344 (487)
                      .++++-..++.|+.+|..++....   ..+.. ..           ...-..++|+|+|++|..++  .+.|+.++....
T Consensus       241 ~lyv~d~~~~~V~~~d~~~g~~~~---~~~~~-~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~  305 (433)
T 4hw6_A          241 KIYYTRYHHAMISSYDPATGTLTE---EEVMM-DT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE  305 (433)
T ss_dssp             CEEECBTTCSEEEEECTTTCCEEE---EEEEC-SC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred             eEEEEECCCCEEEEEECCCCeEEE---EEecc-CC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            666566667889999988665310   11111 00           12234699999999776664  388999887531


Q ss_pred             Cce---eeeeecccccccccccc-cCCCCcceeeEEEE---------cCCCCEEEEEcCCCcEEEEEe
Q 011368          345 STP---VATFKIHEHLRPKLCDL-YNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       345 ~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      ...   ...+.+..... ...+- ...........+++         .++|.+.++-..++.|+.++.
T Consensus       306 ~~~~~~~~~~ag~~g~~-g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          306 TGKLAVPYIVCGQHSSP-GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TCCBCCCEEEEECTTCC-CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CcccCcEEEEEecCCCC-ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            111   11222210000 00000 00001112257898         677777777777788888874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.012  Score=55.83  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=93.4

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      ....|+|.|..++.++++....+.|++.|..++.+..+....                                      
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~--------------------------------------  181 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN--------------------------------------  181 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--------------------------------------
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--------------------------------------
Confidence            456888853112444444444567888888877665442100                                      


Q ss_pred             eeeeecccCCCceeEEEe-------CCCCCEEEEe-cCC-------eEEEEEccCCCcee-----EEeecCCCCCCCCCC
Q 011368          195 ATKVYPHAHDFNINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTE  254 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~-------s~~~~~l~s~-~d~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~  254 (487)
                            .........++|       +++++.|+++ ..+       .|.+.+....+...     ..+       ... .
T Consensus       182 ------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~  247 (496)
T 3kya_A          182 ------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-K  247 (496)
T ss_dssp             ------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-S
T ss_pred             ------ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-C
Confidence                  112345789999       9999966665 332       26666544312211     111       111 1


Q ss_pred             cEEEEEEecCCCCEEEEEeCCCeEEEEEcc-------CCccccc--------cceeecccccccCccccccccccceeEE
Q 011368          255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMR-------QSALCDH--------SARILRDAAESHGSKSFFTEIIASISDI  319 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~--------~~~~~~~h~~~~~~~~~~~~~~~~v~~v  319 (487)
                      ....++++|++..++++-..++.|..+|+.       ++.....        ....+..            +.......|
T Consensus       248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~~i  315 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEFQI  315 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCEEE
T ss_pred             CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCceEE
Confidence            235678899552666666678899999998       5442000        0011111            012346789


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEeCC
Q 011368          320 KFANDGQHLLSRD--YMNLKLWDIR  342 (487)
Q Consensus       320 ~~s~~~~~l~s~~--d~~i~iwd~~  342 (487)
                      +|+|+|++|..++  ...|+.++..
T Consensus       316 a~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          316 FIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCCEEEEEecC
Confidence            9999999766664  3888887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.95  E-value=0.0049  Score=55.26  Aligned_cols=159  Identities=8%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE--ecCCCC-EEEEEeCCCeEEEEEcc---CCccccccceeec
Q 011368          224 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMR---QSALCDHSARILR  297 (487)
Q Consensus       224 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~  297 (487)
                      +++|.+|++......+..+......+..-...++.+++  +|.+.. ++++...+|.+..|++.   .+....+.++.|.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            68999998852222333321000000011144566676  674313 67778889999999884   3333333446666


Q ss_pred             ccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC----CceeeeeecccccccccccccCCCCcce
Q 011368          298 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD  372 (487)
Q Consensus       298 ~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (487)
                      .              .+.+..|...+....|+.+. +..|..++.+..    ...+..+.. ..            ...+
T Consensus       178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~------------l~aD  230 (355)
T 3amr_A          178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RH------------LTRD  230 (355)
T ss_dssp             C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SS------------BCSC
T ss_pred             C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-Cc------------cccC
Confidence            5              35788999999888888886 445777775421    223333321 11            1112


Q ss_pred             eeEEEE--cCCCC-EEEEEc-CCCcEEEEEeCCCCceeEEE
Q 011368          373 KFECSV--SGDGL-HFATGS-YSNLLRIFSHGVGSAGGITV  409 (487)
Q Consensus       373 ~~~~~~--s~d~~-~l~sg~-~dg~i~iwd~~~~~~~~~~~  409 (487)
                      +-.|++  .++++ +|++.+ .+++..+||.+........+
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            346766  45666 666665 56799999997332334444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.91  E-value=0.015  Score=54.22  Aligned_cols=161  Identities=9%  Similarity=0.007  Sum_probs=96.6

Q ss_pred             CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC--CCeE
Q 011368          203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFV  278 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i  278 (487)
                      .......+++.+.+..|+.+  ..+.|.+.+++ +.....++       .........++++|.+ ..|+....  .+.|
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~-g~ly~td~~~~~~I  227 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI  227 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTT-TEEEEEECSSSCCE
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEeccc-CeEEEEeCCCCCEE
Confidence            34456788888755555544  77899999887 33333222       1223347899999976 55555542  3678


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeee-eccc
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATF-KIHE  355 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~-~~~~  355 (487)
                      ...++......    .....             .-.....|++++++..|..++  .+.|..+|+..  .....+ ....
T Consensus       228 ~~~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~~  288 (400)
T 3p5b_L          228 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEK  288 (400)
T ss_dssp             EEEETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCCEEEEECSS
T ss_pred             EEEeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--CccEEEEeCCC
Confidence            88887654321    11111             024678999999888888775  38899999863  333333 2111


Q ss_pred             ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                      ...             ...++++. .+..+.+-...+.|..++..+++..
T Consensus       289 ~l~-------------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          289 RLA-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             TTS-------------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             CCC-------------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence            100             01367764 3445556667788999997777543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.88  E-value=0.0087  Score=55.56  Aligned_cols=206  Identities=8%  Similarity=-0.006  Sum_probs=115.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+..++|++.+..|+... ..+.|..++.++...                           ...+....         
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---------------------------~~~~~~~~---------  158 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---------------------------EEVVSTGL---------  158 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---------------------------EEEECSSC---------
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---------------------------EEEEeCCC---------
Confidence            34577899998666555544 567788888765432                           01111111         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         .....+++.+ ..+.++++-...+.|.+.+++......+                                      
T Consensus       159 ---~~p~glavd~-~~g~lY~~d~~~~~I~~~~~dg~~~~~l--------------------------------------  196 (386)
T 3v65_B          159 ---ESPGGLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVL--------------------------------------  196 (386)
T ss_dssp             ---SCCCCEEEET-TTTEEEEEETTTTEEEECBTTSCSCEEE--------------------------------------
T ss_pred             ---CCccEEEEEe-CCCeEEEEcCCCCeEEEEeCCCCceEEe--------------------------------------
Confidence               2345677742 2445555556667788777765432221                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                               +.........+++.|.+..|+.+  .. +.|...+++. .....++       ...-.....|+++|++ .
T Consensus       197 ---------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~-------~~~~~~PnGlavd~~~-~  258 (386)
T 3v65_B          197 ---------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIA-------DTHLFWPNGLTIDYAG-R  258 (386)
T ss_dssp             ---------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEE-------CSSCSCEEEEEEEGGG-T
T ss_pred             ---------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEEE-------ECCCCCeeeEEEeCCC-C
Confidence                     12233456889999876666665  44 7788888773 3222221       1223346899999876 4


Q ss_pred             EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .|+.+ +..+.|..+|+......    ..+..             .......+++. .+.++++-. .+.|..++..+ +
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~~~~----~~~~~-------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~-G  319 (386)
T 3v65_B          259 RMYWVDAKHHVIERANLDGSHRK----AVISQ-------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFT-G  319 (386)
T ss_dssp             EEEEEETTTTEEEEECTTSCSCE----EEECS-------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-C
T ss_pred             EEEEEECCCCEEEEEeCCCCeeE----EEEEC-------------CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC-C
Confidence            45444 45678999988653211    12221             01345677773 333333332 38888888554 5


Q ss_pred             ceeeeee
Q 011368          346 TPVATFK  352 (487)
Q Consensus       346 ~~~~~~~  352 (487)
                      ..+..+.
T Consensus       320 ~~~~~i~  326 (386)
T 3v65_B          320 KNQEIIR  326 (386)
T ss_dssp             CSCEEEE
T ss_pred             cceEEEc
Confidence            5444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.87  E-value=0.014  Score=52.47  Aligned_cols=158  Identities=10%  Similarity=0.013  Sum_probs=95.1

Q ss_pred             CceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-C-CeEEE
Q 011368          205 FNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRL  280 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d-g~i~i  280 (487)
                      .....+++.+.+..|+ +- ..+.|.+.+.+ +.....++       .........++++|.+ ..|+.+.. . +.|..
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~  147 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK  147 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCC-CEEEEEccCCCCeEEE
Confidence            3457888886555554 44 78899999987 33332222       1122456899999976 45544443 3 67888


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeeeeec-cccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI-HEHL  357 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~-~~~~  357 (487)
                      .++.....     +.+..            ..-.....++++|++..|..++.  +.|..+|+..  .....+.. ....
T Consensus       148 ~~~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~~~~  208 (316)
T 1ijq_A          148 GGLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRL  208 (316)
T ss_dssp             EETTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECTTTT
T ss_pred             EcCCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecCCcc
Confidence            88764321     22211            00245789999998888877653  8999999863  32333321 1110


Q ss_pred             ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      .             ....+++. ++..+++-...+.|..++..+++.
T Consensus       209 ~-------------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          209 A-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             S-------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             C-------------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            0             01377775 455556666778999999877754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.86  E-value=0.012  Score=57.76  Aligned_cols=26  Identities=4%  Similarity=0.060  Sum_probs=21.4

Q ss_pred             CcEEEEEeCCCcEEEEEccccceeEe
Q 011368          127 GSMFILSTNDKTIKLWKVRDQKVKKI  152 (487)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~  152 (487)
                      +..++.++.|+.+..+|..+++....
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            45778888899999999999987654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.84  E-value=0.049  Score=57.90  Aligned_cols=33  Identities=9%  Similarity=0.016  Sum_probs=27.1

Q ss_pred             cCcEEEEEEcCC------CCEEEEEec-CCcEEEEEeeCC
Q 011368           32 VDIVSAIEFDKT------GDYLAVGDR-GGRVILFETVGG   64 (487)
Q Consensus        32 ~~~V~~~~~s~~------~~~l~~g~~-dg~i~iw~~~~~   64 (487)
                      ...|.|+++.|.      ++++|.|.. |++|+|+++++.
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            457999999863      379999995 999999998754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.82  E-value=0.019  Score=52.47  Aligned_cols=203  Identities=9%  Similarity=0.002  Sum_probs=115.5

Q ss_pred             CcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+..++|++.+..|.... ..+.|..++.++....                           ..+....          
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------------------~~~~~~~----------  115 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------------------EVVSTGL----------  115 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCce---------------------------EEEeCCC----------
Confidence            3467899997666665554 5677888887655321                           1111111          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .....+++.+ .++.++++-...+.|.+.++++.....+                                       
T Consensus       116 --~~p~glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l---------------------------------------  153 (349)
T 3v64_C          116 --ESPGGLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVL---------------------------------------  153 (349)
T ss_dssp             --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------------------
T ss_pred             --CCccEEEEec-CCCeEEEEcCCCCeEEEEcCCCCceEEE---------------------------------------
Confidence              3356778742 2455556666678888888875432221                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                              ..........+++.|.+..|+.+  .. +.|...+++. .....+       ....-.....++++|++ ..
T Consensus       154 --------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~-------~~~~~~~PnGla~d~~~-~~  216 (349)
T 3v64_C          154 --------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRII-------ADTHLFWPNGLTIDYAG-RR  216 (349)
T ss_dssp             --------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEES-------CCSSCSCEEEEEEETTT-TE
T ss_pred             --------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEE-------EECCCCCcceEEEeCCC-CE
Confidence                    12233456889999866666555  44 7888888773 222211       11223457899999876 55


Q ss_pred             EEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368          269 LAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS  345 (487)
Q Consensus       269 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~  345 (487)
                      |+.+ ...+.|..+|+......    ..+..             .......+++. .+ .|..++  .+.|..++..+ +
T Consensus       217 lY~aD~~~~~I~~~~~dG~~~~----~~~~~-------------~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~-G  276 (349)
T 3v64_C          217 MYWVDAKHHVIERANLDGSHRK----AVISQ-------------GLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT-G  276 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCSCE----EEECS-------------SCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT-C
T ss_pred             EEEEECCCCEEEEEeCCCCceE----EEEeC-------------CCCCceEEEEE-CC-EEEEecCCCCeEEEEEccC-C
Confidence            5544 45678999998753211    11211             01345677773 33 444443  37888887544 4


Q ss_pred             ceeeee
Q 011368          346 TPVATF  351 (487)
Q Consensus       346 ~~~~~~  351 (487)
                      +.+..+
T Consensus       277 ~~~~~i  282 (349)
T 3v64_C          277 KNQEII  282 (349)
T ss_dssp             CSCEEE
T ss_pred             CccEEe
Confidence            444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.045  Score=55.64  Aligned_cols=163  Identities=8%  Similarity=0.001  Sum_probs=97.4

Q ss_pred             CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-C-CeE
Q 011368          203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFV  278 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d-g~i  278 (487)
                      .......|++.+.++.|+.+  ..+.|.+.+++ +.....++       .........|+++|.+ ..|+.+.. . +.|
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I  539 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI  539 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEE
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeE
Confidence            34456788888877666665  78899999988 33333222       1223457899999986 45555543 3 678


Q ss_pred             EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeeeeecccc
Q 011368          279 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       279 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      ...++......    .....             .-.....|++.+.+..|+.++.  +.|...++.. ......+.....
T Consensus       540 ~~~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~  601 (791)
T 3m0c_C          540 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKR  601 (791)
T ss_dssp             EEEETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTT
T ss_pred             EEEecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCc
Confidence            88888754321    11211             0246789999988887777653  7899999863 322222222111


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      ..             ...+|++.. +.++++-...+.|...+..+++...
T Consensus       602 l~-------------~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          602 LA-------------HPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             TS-------------SEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             cC-------------CCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceE
Confidence            10             013666643 3444455566888888877775543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.03  Score=53.18  Aligned_cols=186  Identities=8%  Similarity=0.008  Sum_probs=93.9

Q ss_pred             eeEEEeCCC-CCEEEEe-cCCeEEEEEcc-------CCCc------e----e-EEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          207 INSISNNSD-CETFVSA-DDLRINLWNLE-------ISDQ------C----F-NIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       207 v~~i~~s~~-~~~l~s~-~d~~i~iwd~~-------~~~~------~----~-~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                      ...++.+|+ +.++++- .++.|..+|+.       ++..      .    . .+.     .. +.....+.++|+|+| 
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-----~~-~~~~~p~~ia~~p~G-  321 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-----TI-ADPSWEFQIFIHPTG-  321 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-----EC-SSSSCCEEEEECTTS-
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE-----ec-CCCCCceEEEEcCCC-
Confidence            457788995 4445555 88899999987       3322      0    1 111     11 122345899999999 


Q ss_pred             CEEEEE-eCCCeEEEEEccCCccccccceeecccccccCcc-cc-cccccccee-EEEEc-------CCCCEEEEEe-CC
Q 011368          267 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-SF-FTEIIASIS-DIKFA-------NDGQHLLSRD-YM  334 (487)
Q Consensus       267 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-~~-~~~~~~~v~-~v~~s-------~~~~~l~s~~-d~  334 (487)
                      +.|+.+ +....|+.++.............+-+........ .. ....-.... .++..       ++|.++++-. ..
T Consensus       322 ~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~  401 (496)
T 3kya_A          322 KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF  401 (496)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGT
T ss_pred             CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCC
Confidence            754444 5577898876643210000001222200000000 00 000011233 44444       4455444433 38


Q ss_pred             eEEEEeCCCCCceeeeeecccccc---c----cccc--ccCCCCcceeeEEEEcCC-CCEEEEEcCCCcEEEEEeCCC
Q 011368          335 NLKLWDIRMDSTPVATFKIHEHLR---P----KLCD--LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       335 ~i~iwd~~~~~~~~~~~~~~~~~~---~----~~~~--~~~~~~~~~~~~~~~s~d-~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .|+.++. . + .+.++.+.....   +    ...+  ............++++++ |.++++=..++.|+.++++..
T Consensus       402 rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          402 CVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             EEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            9999984 2 4 455554431100   0    0000  000111223468999996 777777777889999998754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.74  E-value=0.024  Score=51.23  Aligned_cols=151  Identities=11%  Similarity=0.050  Sum_probs=81.8

Q ss_pred             CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368          205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  284 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~  284 (487)
                      ..+..+.+.++++.++++.++.|  |.....+.....+.      ......+..+.+.|++ .+++++...+..+-.|- 
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~------~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~-  191 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALV------QEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEP-  191 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEE------CSCCCCEEEEEECTTS-CEEEEETTSSEEEEECT-
T ss_pred             CCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEee------cCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCC-
Confidence            34667777666777766655544  33333455454431      2334568899999987 77766644433333332 


Q ss_pred             CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccc
Q 011368          285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  364 (487)
Q Consensus       285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  364 (487)
                      .+...    .....            .....+..+.+.+++..++.+.+|.+++.+... +..-..+......       
T Consensus       192 gG~tW----~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~-------  247 (327)
T 2xbg_A          192 GQTAW----EPHNR------------TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRR-------  247 (327)
T ss_dssp             TCSSC----EEEEC------------CSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTTSS-------
T ss_pred             CCCce----eECCC------------CCCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCccc-------
Confidence            12211    11111            113468889999999888777778887764221 2222222111000       


Q ss_pred             cCCCCcceeeEEEEcCCCCEEEEEcCCCcE
Q 011368          365 YNNDSIFDKFECSVSGDGLHFATGSYSNLL  394 (487)
Q Consensus       365 ~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i  394 (487)
                       ..   ..+..+.+.+++..++++. +|.|
T Consensus       248 -~~---~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          248 -NS---VGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             -CC---SCEEEEEESSSSCEEEEES-TTCE
T ss_pred             -CC---cceEEEEecCCCEEEEEeC-CCeE
Confidence             00   0125888988887776655 5655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.71  E-value=0.025  Score=50.76  Aligned_cols=200  Identities=11%  Similarity=0.052  Sum_probs=118.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+..+.|.+ .++.++.+-...+.|..++..++......                                        
T Consensus        35 ~~~~~ld~d~-~~~~lyw~D~~~~~I~r~~~~g~~~~~~~----------------------------------------   73 (318)
T 3sov_A           35 EDAAAVDFVF-SHGLIYWSDVSEEAIKRTEFNKTESVQNV----------------------------------------   73 (318)
T ss_dssp             EEEEEEEEEG-GGTEEEEEETTTTEEEEEETTSSSCCCEE----------------------------------------
T ss_pred             CccEEEEEEe-CCCEEEEEECCCCcEEEEEccCCCceEEE----------------------------------------
Confidence            3467888963 34555555567788888888765321100                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                            +.........+++.+.+..|+.+  ..+.|.+++++. .....++       .........++++|.+ ..|+.
T Consensus        74 ------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~-------~~~~~~P~giavdp~~-g~ly~  138 (318)
T 3sov_A           74 ------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLF-------WQELDQPRAIALDPSS-GFMYW  138 (318)
T ss_dssp             ------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE-------CSSCSSEEEEEEEGGG-TEEEE
T ss_pred             ------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEE-------eCCCCCccEEEEeCCC-CEEEE
Confidence                  01122345678888755555444  778999999873 3222221       1223456899999976 45555


Q ss_pred             Ee--CCCeEEEEEccCCccccccceee-cccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCc
Q 011368          272 SS--SRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDST  346 (487)
Q Consensus       272 ~~--~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~  346 (487)
                      +.  ..+.|...++.....     +.+ ..             .-.....++++|++..|..++ . +.|..+|+..  .
T Consensus       139 td~~~~~~I~r~~~dG~~~-----~~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~  198 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSSR-----FIIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--T  198 (318)
T ss_dssp             EECSSSCEEEEEETTSCSC-----EEEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--C
T ss_pred             EecCCCCEEEEEEcCCCCe-----EEEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--C
Confidence            54  257888888764321     121 11             023568999999888777765 3 8999999863  2


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ....+......              ....+++.. +..+.+-...+.|..++..+++.
T Consensus       199 ~~~~~~~~~~~--------------~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          199 NRQAVVKGSLP--------------HPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             SCEEEECSCCS--------------CEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             ceEEEecCCCC--------------CceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            22222211110              013677753 34555666778899999877754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.65  E-value=0.033  Score=54.76  Aligned_cols=85  Identities=13%  Similarity=0.015  Sum_probs=46.7

Q ss_pred             EEEEecCCCCEEEEEeCC----------------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEE
Q 011368          258 SAEFHPIYCNLLAYSSSR----------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  321 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~  321 (487)
                      .+++.+.. .+++.+..+                +.|.-+|.++++..    -.++..   +....-+.....++. +..
T Consensus       245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~----W~~q~~---~~d~wd~d~~~~p~l-~d~  315 (599)
T 1w6s_A          245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK----FGYQKT---PHDEWDYAGVNVMML-SEQ  315 (599)
T ss_dssp             CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE----EEEESS---TTCSSCCCCCCCCEE-EEE
T ss_pred             ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee----eEeecC---CCccccccCCCccEE-Eec
Confidence            35667776 677777655                37889999998753    222220   000000000011121 222


Q ss_pred             c-CCC---CEEEEEe-CCeEEEEeCCCCCceeeeee
Q 011368          322 A-NDG---QHLLSRD-YMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       322 s-~~~---~~l~s~~-d~~i~iwd~~~~~~~~~~~~  352 (487)
                      . .+|   ..++.++ +|.++++|.++ ++++....
T Consensus       316 ~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~  350 (599)
T 1w6s_A          316 KDKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK  350 (599)
T ss_dssp             ECTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             cccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence            2 567   3555564 59999999987 77766554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.58  E-value=0.069  Score=52.44  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             CcEEEEEeCCCcEEEEEccccceeEe
Q 011368          127 GSMFILSTNDKTIKLWKVRDQKVKKI  152 (487)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~  152 (487)
                      +..++.++.|+.|..+|..+|+....
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEee
Confidence            45677888899999999999987654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.57  E-value=0.041  Score=49.65  Aligned_cols=158  Identities=9%  Similarity=0.007  Sum_probs=87.9

Q ss_pred             CCCceeEEEeCCCCCEEEEecCCeEEE-EEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          203 HDFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      ....+..+.+.+++.+++.+.++.+.. +|-  ++...+.+.      ......+..+.+.+++ .++ .++.+|.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s  230 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFS  230 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEe
Confidence            345688899999998888885555443 332  133333221      1234568889999987 655 55567887776


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccccccccc
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      +...++       .+.. ...+.    + .....+..+.+.+++..++++.++.| ++.... ++.-..+.......   
T Consensus       231 ~~D~G~-------tW~~-~~~~~----~-~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~---  292 (327)
T 2xbg_A          231 DPDNSE-------NWGE-LLSPL----R-RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVP---  292 (327)
T ss_dssp             ETTEEE-------EECC-CBCTT----S-SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSS---
T ss_pred             cCCCCC-------eeEe-ccCCc----c-cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCC---
Confidence            433232       2222 00000    0 01235788999998888888877776 333332 43333332111000   


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                            ..+   .++.|.++++ +++++.+|.|.-++
T Consensus       293 ------~~~---~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          293 ------SNF---YKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             ------SCC---CEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             ------CCe---EEEEEECCCc-eEEEcCCceEEEEc
Confidence                  011   4788875554 56677788776554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.57  E-value=0.04  Score=49.44  Aligned_cols=210  Identities=9%  Similarity=0.047  Sum_probs=116.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+..++|++.+..|+.+. ..+.|..++.++....                     ...  ...+...-         
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~---------------------~~~--~~~~~~~~---------   76 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------SSY--DTVISRDI---------   76 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------C--EEEECSSC---------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC---------------------ccc--EEEEeCCC---------
Confidence            34578999998766665554 5678888887652100                     000  01121111         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         .....+++.+ .++.++++-...+.|.+.+........+                                      
T Consensus        77 ---~~p~glavd~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~--------------------------------------  114 (316)
T 1ijq_A           77 ---QAPDGLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTL--------------------------------------  114 (316)
T ss_dssp             ---SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEE--------------------------------------
T ss_pred             ---CCcCEEEEee-cCCeEEEEECCCCEEEEEeCCCCceEEE--------------------------------------
Confidence               3357788742 2445555556778899988875433222                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                               ..........+++.|.+..|+.+  .. +.|...+++ +.....+.       ...-.....++++|++ .
T Consensus       115 ---------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~-------~~~~~~P~gla~d~~~-~  176 (316)
T 1ijq_A          115 ---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS-G  176 (316)
T ss_dssp             ---------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CSSCSCEEEEEEETTT-T
T ss_pred             ---------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE-------ECCCCCceEEEEeccC-C
Confidence                     12223456889999866655554  33 688888877 33222221       1122457899999887 5


Q ss_pred             EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCC
Q 011368          268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~  344 (487)
                      .|+.+ +..+.|..+|+.....     +.+....          ..-.....+++. .+ .|...+  .+.|..++..+ 
T Consensus       177 ~lY~~D~~~~~I~~~d~dg~~~-----~~~~~~~----------~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~~-  238 (316)
T 1ijq_A          177 RLYWVDSKLHSISSIDVNGGNR-----KTILEDE----------KRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRLT-  238 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSCSC-----EEEEECT----------TTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT-
T ss_pred             EEEEEECCCCeEEEEecCCCce-----EEEeecC----------CccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCCC-
Confidence            55554 4567999999875321     2221100          001234667774 23 444443  38888888765 


Q ss_pred             Cceeeee
Q 011368          345 STPVATF  351 (487)
Q Consensus       345 ~~~~~~~  351 (487)
                      ++.+..+
T Consensus       239 g~~~~~i  245 (316)
T 1ijq_A          239 GSDVNLL  245 (316)
T ss_dssp             CCCCEEE
T ss_pred             CcceEEE
Confidence            4444444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.55  E-value=0.04  Score=49.45  Aligned_cols=205  Identities=7%  Similarity=0.004  Sum_probs=116.1

Q ss_pred             CcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+.+++|++.+..|.... ..+.|..++.++....                        +  ..+...-          
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~------------------------~--~~~~~~l----------   78 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------------------------Q--NVVVSGL----------   78 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC------------------------C--EEEEECC----------
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce------------------------E--EEEcCCC----------
Confidence            3467899998655555444 5678888887655310                        0  0111111          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .....+++.+ .++.++++-...+.|.+++.++.....+                                       
T Consensus        79 --~~p~glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l---------------------------------------  116 (318)
T 3sov_A           79 --LSPDGLACDW-LGEKLYWTDSETNRIEVSNLDGSLRKVL---------------------------------------  116 (318)
T ss_dssp             --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------------------
T ss_pred             --CCccEEEEEc-CCCeEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence              3356777742 3455556656778898888875432222                                       


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                              ..........+++.|.+..|+.+ .  .+.|...+++ +.....++       ...-.....++++|++ ..
T Consensus       117 --------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-------~~~l~~Pnglavd~~~-~~  179 (318)
T 3sov_A          117 --------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII-------NSEIYWPNGLTLDYEE-QK  179 (318)
T ss_dssp             --------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE-------CSSCSCEEEEEEETTT-TE
T ss_pred             --------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE-------ECCCCCccEEEEeccC-CE
Confidence                    12333456789999866666555 2  5778888877 32222221       1122346899999976 55


Q ss_pred             EEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368          269 LAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS  345 (487)
Q Consensus       269 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~  345 (487)
                      |+.+ +..+.|..+|+......    .....             .......+++..  ..++..+  .+.|..++..+ +
T Consensus       180 lY~aD~~~~~I~~~d~dG~~~~----~~~~~-------------~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~-G  239 (318)
T 3sov_A          180 LYWADAKLNFIHKSNLDGTNRQ----AVVKG-------------SLPHPFALTLFE--DILYWTDWSTHSILACNKYT-G  239 (318)
T ss_dssp             EEEEETTTTEEEEEETTSCSCE----EEECS-------------CCSCEEEEEEET--TEEEEEETTTTEEEEEETTT-C
T ss_pred             EEEEECCCCEEEEEcCCCCceE----EEecC-------------CCCCceEEEEeC--CEEEEEecCCCeEEEEECCC-C
Confidence            5544 45788999998753211    11121             013456677653  3444333  38899999865 5


Q ss_pred             ceeeeee
Q 011368          346 TPVATFK  352 (487)
Q Consensus       346 ~~~~~~~  352 (487)
                      +....+.
T Consensus       240 ~~~~~i~  246 (318)
T 3sov_A          240 EGLREIH  246 (318)
T ss_dssp             CSCEEEE
T ss_pred             CceEEEe
Confidence            4444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.53  E-value=0.007  Score=57.09  Aligned_cols=155  Identities=7%  Similarity=-0.004  Sum_probs=90.7

Q ss_pred             CceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CC----e
Q 011368          205 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----F  277 (487)
Q Consensus       205 ~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg----~  277 (487)
                      .....++++| ++..|+.+ ..+.|+.+|+. .+....+.        ........++|++++ +.|+++.. ++    .
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPN  206 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEE
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccce
Confidence            3467889998 45566666 44889999987 33333322        133457899999999 75555554 22    2


Q ss_pred             EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEEe-CCeEEEEeCCCCCceeeeeeccc
Q 011368          278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                      +..++. .+....  ...+..              -.....++++| +|.++++-. .+.|+.++... ...........
T Consensus       207 v~~~~~-~g~~~~--~~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~  268 (430)
T 3tc9_A          207 NYILTR-ESGFKV--ITELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQD  268 (430)
T ss_dssp             EEEEEG-GGTSCS--EEEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSS
T ss_pred             EEEEeC-CCceee--eeeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCC
Confidence            333333 332110  011111              13457788999 566555543 48999999864 33212222111


Q ss_pred             ccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEEEeCC
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGV  401 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iwd~~~  401 (487)
                      ...              ...++|+|+|++| ++-...+.|..++...
T Consensus       269 ~~~--------------P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          269 SGW--------------EFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSC--------------CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCc--------------ceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            100              1489999999954 4555678899988764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.48  E-value=0.02  Score=51.93  Aligned_cols=167  Identities=10%  Similarity=0.089  Sum_probs=95.4

Q ss_pred             CCceeEEEeCCCCCEEEEe-------------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec--CCCCE
Q 011368          204 DFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNL  268 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~  268 (487)
                      .....++...|+|..++++             .+|.|.++|.++.......+......+.........+.+.+  ++...
T Consensus        49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            3456677788888777775             58899999987433222222211100222334567777766  34123


Q ss_pred             EEEE-eC--CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe----C--------
Q 011368          269 LAYS-SS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y--------  333 (487)
Q Consensus       269 l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----d--------  333 (487)
                      |+++ ..  +..|.+|++............+.+.            .-...+.+.+.++|.+.++..    +        
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~  196 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM  196 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchh
Confidence            4444 33  5678888877643222222333320            124678999999999887753    1        


Q ss_pred             ------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCC
Q 011368          334 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV  401 (487)
Q Consensus       334 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~  401 (487)
                            |.|+.+|.   ++.......-..+                +.++||||++.|+.+. ..+.|+.|++..
T Consensus       197 ~~~~~~g~vyr~d~---~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          197 HLGLAWSFVTYYSP---NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HTTCCCEEEEEECT---TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             hccCCccEEEEEEC---CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                  33444443   2222112211111                5899999998777654 568999999974

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.46  E-value=0.04  Score=50.30  Aligned_cols=115  Identities=14%  Similarity=0.044  Sum_probs=63.1

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC---CCCEEEEEeCC-----
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~d-----  275 (487)
                      -.....++|.|+|+++++-.++.|++++ . + ....+.+.+  ...........++++|+   +..+.++-...     
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g-~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR-E-G-RLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE-T-T-EEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE-C-C-CccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            3456799999999976666669999998 3 2 222221111  12222456799999998   41444443332     


Q ss_pred             CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      +.|..++...+.. ......+..-   +..  .-..|  ....++|.|||.+.++.
T Consensus       105 ~~v~r~~~~~~~~-~~~~~l~~~~---p~~--~~~~h--~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          105 NQVVRLRHLGERG-VLDRVVLDGI---PAR--PHGLH--SGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEEECSSCE-EEEEEEEEEE---CCC--TTCCC--CCCCEEECTTSCEEEEC
T ss_pred             cEEEEEEeCCCCc-CceEEEEEeC---CCC--CCCCc--CCceEEECCCCCEEEEE
Confidence            5777887764321 1111112110   000  00112  23689999999776663

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.45  E-value=0.11  Score=51.52  Aligned_cols=197  Identities=9%  Similarity=0.030  Sum_probs=120.4

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+..|+|.+ .++..+.+-..++.|..+++.+.....+.                                        
T Consensus        37 ~~~~~l~~d~-~~~~lywtD~~~~~I~r~~~~g~~~~~v~----------------------------------------   75 (628)
T 4a0p_A           37 KEASALDFDV-TDNRIYWTDISLKTISRAFMNGSALEHVV----------------------------------------   75 (628)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEE----------------------------------------
T ss_pred             CceEEEEEEC-CCCEEEEEECCCCeEEEEECCCCCcEEEE----------------------------------------
Confidence            4578899963 34455555567888988888765433221                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                             .........+++.+.+..|+.+  ..+.|.+.+++. .....++       ...-.....++++|.. ..|+.
T Consensus        76 -------~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~-------~~~l~~P~~iavdp~~-G~lY~  139 (628)
T 4a0p_A           76 -------EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLV-------WKDLDSPRALALDPAE-GFMYW  139 (628)
T ss_dssp             -------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEE-------CSSCCCEEEEEEETTT-TEEEE
T ss_pred             -------eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEE-------eCCCCCcccEEEccCC-CeEEE
Confidence                   1122345678887766666555  678999999873 3222221       1222456899999965 45555


Q ss_pred             EeC--CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCce
Q 011368          272 SSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTP  347 (487)
Q Consensus       272 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~  347 (487)
                      ...  .+.|...++......    .....              -.....+++++++..|..++.  +.|..+|+.. ...
T Consensus       140 tD~g~~~~I~r~~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~  200 (628)
T 4a0p_A          140 TEWGGKPKIDRAAMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR  200 (628)
T ss_dssp             EECSSSCEEEEEETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC
T ss_pred             eCCCCCCEEEEEeCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce
Confidence            542  567777777654321    11222              246789999998888887753  8899999864 222


Q ss_pred             eeeeecc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          348 VATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       348 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                       ..+... ..+                .++++.. +...++-...+.|...|..+++.
T Consensus       201 -~v~~~~l~~P----------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          201 -EVIADDLPHP----------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             -EEEEECCSCE----------------EEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             -EEeeccCCCc----------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence             233211 111                3777765 44445555678898888777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.45  E-value=0.11  Score=52.82  Aligned_cols=202  Identities=9%  Similarity=0.030  Sum_probs=113.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+..|+|++.+..|+... ..+.|+.+++++....                       ......+....         
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----------------------~~~~~vi~~~l---------  470 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI---------  470 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC---------
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----------------------cceeEEEecCC---------
Confidence            44577899998655555444 5577888887643110                       00011122111         


Q ss_pred             ccccceeEEEEEecCCC-cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         .....|++.  ..+ .++++-...+.|.+.++.+.....+                                     
T Consensus       471 ---~~P~GLAvD--~~~~~LY~tD~~~~~I~v~~ldG~~~~~l-------------------------------------  508 (791)
T 3m0c_C          471 ---QAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTL-------------------------------------  508 (791)
T ss_dssp             ---SCCCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEE-------------------------------------
T ss_pred             ---CCcceeeee--ecCCcEEEEecCCCeEEEEeCCCCeEEEE-------------------------------------
Confidence               445678874  344 5555556778899998876543322                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                +.........|++.|.+..|+.+  .. +.|...+++ +.....++       ...-.....|++++.+ 
T Consensus       509 ----------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv-------~~~l~~P~GLavD~~~-  569 (791)
T 3m0c_C          509 ----------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS-  569 (791)
T ss_dssp             ----------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CSSCSCEEEEEEETTT-
T ss_pred             ----------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEE-------eCCCCCceEEEEecCC-
Confidence                      12233457899999876666555  33 678888887 33333322       1223467899999877 


Q ss_pred             CEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCC
Q 011368          267 NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM  343 (487)
Q Consensus       267 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~  343 (487)
                      ..|+.+. ..+.|...++......    ......           +.-.....|++.  +..|+..+ . +.|...+..+
T Consensus       570 ~~LYwaD~~~~~I~~~d~dG~~~~----~v~~~~-----------~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          570 GRLYWVDSKLHSISSIDVNGGNRK----TILEDE-----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE----EEEECT-----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEeCCCCcEEEEecCCCceE----EEecCC-----------CccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence            5555554 4678999998654321    222210           001223456654  34565554 3 7888887655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.42  E-value=0.0026  Score=64.01  Aligned_cols=157  Identities=11%  Similarity=0.027  Sum_probs=86.8

Q ss_pred             ceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CC-CeEEEE
Q 011368          206 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLV  281 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~iw  281 (487)
                      ....|++.+.+..|+.+  ..+.|.+.++. +.....++       .........++++|.+ ..|+.+. .. +.|..+
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~-------~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEEC-------CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEE-------eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEE
Confidence            34578888655455444  67889999987 33322221       1112234678899876 4444433 22 677777


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecc-cccc
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIH-EHLR  358 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~-~~~~  358 (487)
                      ++.....     +.+..            ..-.....|+|+|++..|+.++  .+.|..+++..  .....+... ....
T Consensus       525 ~~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~  585 (699)
T 1n7d_A          525 GLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLA  585 (699)
T ss_dssp             CSSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCS
T ss_pred             eCCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCC
Confidence            6654321     11111            0013467899999877776664  38899999863  222222211 1000


Q ss_pred             cccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                                   ....+++..+ .++++....+.|..++..+++.
T Consensus       586 -------------~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          586 -------------HPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             -------------SCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             -------------CceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence                         0025666544 4445555678999999877643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.41  E-value=0.083  Score=49.16  Aligned_cols=211  Identities=9%  Similarity=0.029  Sum_probs=117.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+..|+|++.+..|+..+ ..+.|+.+++++....                       ......+....         
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----------------------~~~~~~~~~~~---------  158 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI---------  158 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------CCCEEEECSSC---------
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----------------------CcceEEEeCCC---------
Confidence            45678999998766666554 5677888887653100                       00011122111         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         .....|++.+ ..+.++++-...+.|.+.++++.....+                                      
T Consensus       159 ---~~p~glavD~-~~~~lY~~d~~~~~I~~~~~~g~~~~~l--------------------------------------  196 (400)
T 3p5b_L          159 ---QAPDGLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTL--------------------------------------  196 (400)
T ss_dssp             ---SCEEEEEEET-TTTEEEEEETTTTEEEEECTTTCSEEEE--------------------------------------
T ss_pred             ---CCcccEEEEe-cCCceEEEECCCCeEEEEeCCCCceEEE--------------------------------------
Confidence               4567788842 2455556666778888888876543322                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--c-CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                               +.........|++.|.+..|+.+  . .+.|...+++ +.....++       ...-.....|+++|++ .
T Consensus       197 ---------~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~-------~~~l~~P~glavd~~~-~  258 (400)
T 3p5b_L          197 ---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS-G  258 (400)
T ss_dssp             ---------EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEE-------CSSCSCEEEEEEETTT-T
T ss_pred             ---------EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEE-------ECCCCceEEEEEEeCC-C
Confidence                     12233446889999866666555  2 4778888887 33322221       1222457899999887 5


Q ss_pred             EEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC-CeEEEEeCCCC
Q 011368          268 LLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMD  344 (487)
Q Consensus       268 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~iwd~~~~  344 (487)
                      .|+.+. ..+.|..+|+......    ......           +.-.....+++.  +..|+.. .. +.|..+|..+ 
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~~~~----~~~~~~-----------~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~-  320 (400)
T 3p5b_L          259 RLYWVDSKLHSISSIDVNGGNRK----TILEDE-----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT-  320 (400)
T ss_dssp             EEEEEETTTTEEEEEETTSCCCE----EEEECS-----------STTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS-
T ss_pred             EEEEEECCCCEEEEEeCCCCccE----EEEeCC-----------CCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC-
Confidence            565554 5678999998754321    111110           001234566663  3344433 33 7888888655 


Q ss_pred             Cceeeeee
Q 011368          345 STPVATFK  352 (487)
Q Consensus       345 ~~~~~~~~  352 (487)
                      ++.+..+.
T Consensus       321 G~~~~~i~  328 (400)
T 3p5b_L          321 GSDVNLLA  328 (400)
T ss_dssp             CCCCEEEE
T ss_pred             CCceEEEe
Confidence            54444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.37  E-value=0.036  Score=49.20  Aligned_cols=173  Identities=10%  Similarity=0.061  Sum_probs=103.6

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      --.+++|.+ .++.++++.-..++|..|+...+....+.......                                   
T Consensus        14 yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~-----------------------------------   57 (334)
T 2p9w_A           14 TPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASS-----------------------------------   57 (334)
T ss_dssp             CCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCC-----------------------------------
T ss_pred             CCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccc-----------------------------------
Confidence            346788952 34444444458999999999766543331000000                                   


Q ss_pred             eeeeecccCCCceeEEEe---CCCCCEEEEe-c-------------CCeEEEEEcc---CCCceeEEeecCCCCCCC---
Q 011368          195 ATKVYPHAHDFNINSISN---NSDCETFVSA-D-------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD---  251 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~---s~~~~~l~s~-~-------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~---  251 (487)
                           -......+..+.|   .|+++++++. .             +..|..+|+.   +++.... .++.. ...+   
T Consensus        58 -----~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~-~~~~~~~  130 (334)
T 2p9w_A           58 -----NGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEK-VQDEFEK  130 (334)
T ss_dssp             -----SSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHH-HHHHHHH
T ss_pred             -----cCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCcc-ccccccc
Confidence                 0001123578899   6887777764 2             6779999988   5544332 22110 0000   


Q ss_pred             ----CCCcEEEEEEecCCCCEEEEEeCC-CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368          252 ----LTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  326 (487)
Q Consensus       252 ----~~~~v~~v~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~  326 (487)
                          -......++..++| +..++++.. +.|...+......     ..+.. ....      .......+.|+++|+|+
T Consensus       131 ~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~-~~~~------~~~~~G~nGIv~~pdg~  197 (334)
T 2p9w_A          131 KAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAW-ESGN------GGQRPGYSGITFDPHSN  197 (334)
T ss_dssp             HHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEE-CCCC------SSSCCSCSEEEEETTTT
T ss_pred             cccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeee-cCCC------cccccCcceEEEeCCCC
Confidence                11347899999999 999988888 8877777664321     22221 0000      01123578999999999


Q ss_pred             EEEEEe-CCeEEEEeCCC
Q 011368          327 HLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       327 ~l~s~~-d~~i~iwd~~~  343 (487)
                      .|++.. .+.|..+|+..
T Consensus       198 ~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          198 KLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEESSSSSEEEEECSS
T ss_pred             EEEEEcCCCeEEEEcCCC
Confidence            888874 59999999874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.30  E-value=0.067  Score=47.53  Aligned_cols=182  Identities=9%  Similarity=-0.004  Sum_probs=103.9

Q ss_pred             cCCCceeEEEeCC-CCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEE---ecCCCCEEEEEe--
Q 011368          202 AHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF---HPIYCNLLAYSS--  273 (487)
Q Consensus       202 ~~~~~v~~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~---~p~~~~~l~~~~--  273 (487)
                      ....--.+++|.+ ++.++++. ..++|..|+... +....+ ..+.....+. ...+..|.|   .|++ .++++..  
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~   86 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA   86 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence            3344456889977 45555556 899999999873 333332 1110000011 124578999   6887 7777544  


Q ss_pred             -----------CCCeEEEEEcc---CCccccccceeecccccccCccccccc-cccceeEEEEcCCCCEEEEEe-C-CeE
Q 011368          274 -----------SRGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD-Y-MNL  336 (487)
Q Consensus       274 -----------~dg~i~iwd~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~~-d-~~i  336 (487)
                                 .+..|..||+.   +++..    ............ ....+ -......++..++|+..++++ - +.|
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~~-~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDEF-EKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI  161 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHHH-HHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCccccccc-cccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence                       26789999998   66533    111110000000 00000 013488999999999888775 3 566


Q ss_pred             EEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          337 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       337 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ...+..  ++.+..+-.......         .....+.++++|+|..|++...+|.+..+|+.+.
T Consensus       162 ~rV~pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          162 ARVSAD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECTT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EEEeCC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            555553  443333321111000         0111258999999998888877999999998843

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.18  E-value=0.0039  Score=62.77  Aligned_cols=122  Identities=8%  Similarity=-0.004  Sum_probs=66.2

Q ss_pred             CceeEEEeCCCCCEEEEe--cC-CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEE
Q 011368          205 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  281 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iw  281 (487)
                      .....+++.|.+..|+.+  .. +.|...++.. .....++       ...-.....|+|+|++..++++-+..+.|..+
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~-------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~  567 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  567 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES-------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE-------eCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence            345788899866555554  33 6787777762 2221111       11123456799999863555555567889999


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-e-CCeEEEEeCCCCCceeeeee
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~  352 (487)
                      ++.....     +.+....          ..-.....|++..+  .|+.. . .+.|..++..+ ++.+..+.
T Consensus       568 d~dG~~~-----~~~~~~~----------~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~-G~~~~~i~  622 (699)
T 1n7d_A          568 DVNGGNR-----KTILEDE----------KRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT-GSDVNLLA  622 (699)
T ss_dssp             CSSSSCC-----EEECCCS----------SSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT-EEEEECCC
T ss_pred             ccCCCce-----EEEEecC----------CcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC-CCceEEee
Confidence            9865321     2221100          00112344555443  44443 3 38899998765 55555553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.10  E-value=0.15  Score=46.14  Aligned_cols=153  Identities=10%  Similarity=0.123  Sum_probs=86.6

Q ss_pred             ceeEEEeCC--CCC--EEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeC---
Q 011368          206 NINSISNNS--DCE--TFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS---  274 (487)
Q Consensus       206 ~v~~i~~s~--~~~--~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~---  274 (487)
                      ....+.+.+  +++  ++++- .  +.+|.+|+++..+.....+.    ++.+ .-...+.+.+.++| .+.++...   
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft  187 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI  187 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence            445555533  343  44442 3  67888988875544444331    1222 22457899999998 76666531   


Q ss_pred             --------------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEE
Q 011368          275 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL  338 (487)
Q Consensus       275 --------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~i  338 (487)
                                    .|.|.-+|.  ++..    .....              -..-+.++|+||++.|..++  .+.|+.
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~  247 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHV  247 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECT--TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CcccccchhhccCCccEEEEEEC--CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence                          133444433  2211    11222              23568999999999888875  389999


Q ss_pred             EeCCCCCce--eeeeecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEcCC-CcEEEEEe
Q 011368          339 WDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSH  399 (487)
Q Consensus       339 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~~d-g~i~iwd~  399 (487)
                      |++...+..  ...+.....+                -.+++.+ +|++.+++..+ +.|..|+.
T Consensus       248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            998643322  1222111111                3789998 59887766544 34444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.05  E-value=0.18  Score=45.99  Aligned_cols=27  Identities=33%  Similarity=0.584  Sum_probs=21.4

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~   60 (487)
                      .....++|.|+|+++++ ..+|.|.+++
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence            35679999999996555 5679998888

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.05  E-value=0.18  Score=45.97  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=21.0

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEE
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~   60 (487)
                      .....|+|.|+|++++ +..+|.|++++
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence            3578999999998555 45669998886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.01  E-value=0.32  Score=48.10  Aligned_cols=155  Identities=12%  Similarity=0.064  Sum_probs=92.2

Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC--CCeEEE
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL  280 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~i  280 (487)
                      .....+++.+.++.|+.+  ..+.|.+.+++ +.....++       ...-.....|+++|.+ ..|+.+..  .+.|..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~-------~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r  154 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLF-------WQELDQPRAIALDPSS-GFMYWTDWGEVPKIER  154 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEE-------eCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence            457889998866666655  78899999998 33322222       1222345789999976 45555443  356666


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeeeeec--ccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI--HEH  356 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~~~~--~~~  356 (487)
                      .++......    .....             .-.....+++++++..|..++.  +.|...|+..  .....+..  ...
T Consensus       155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~~~~~  215 (619)
T 3s94_A          155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKGSLPH  215 (619)
T ss_dssp             EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC---------
T ss_pred             EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeCCCCC
Confidence            666543211    11111             0245789999998887777653  7888888863  32222211  111


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      +                .++++..+ ...++-...+.|...|..+++.
T Consensus       216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            1                36777655 4444555678899999887754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.81  E-value=0.18  Score=46.31  Aligned_cols=166  Identities=11%  Similarity=0.115  Sum_probs=98.4

Q ss_pred             eCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccc
Q 011368          212 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  291 (487)
Q Consensus       212 ~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~  291 (487)
                      ...+|..++.+.++.||.-++... ..++++..+. .+  .-..|..+..+|+| .+||..+.. .|.|..+..+.....
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~L~~~~-~i--~f~~i~qlvlSpsG-~lLAl~g~~-~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTD-SLYHSLNFSR-HL--VLDDTFHVISSTSG-DLLCLFNDN-EIFVMEVPWGYSNVE  101 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTC-SSCEEEECTT-TC--CCCTTCEEEECTTS-SEEEEECSS-EEEEEECCTTCSCCC
T ss_pred             EEcCCCEEEEEECCEEEEEECCCC-CcceEEecCc-cc--ccCceeEEEECCCC-CEEEEecCC-eEEEEEecCccccCc
Confidence            345788888888889998888733 3455543220 00  11246789999999 888887654 789998884321110


Q ss_pred             ------cce--eecccccccCccccccccccceeEEEEcCCC---CEEEE-EeCCeEEEEeCCCC-Cceeeeeecccccc
Q 011368          292 ------SAR--ILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLS-RDYMNLKLWDIRMD-STPVATFKIHEHLR  358 (487)
Q Consensus       292 ------~~~--~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~  358 (487)
                            ..+  .+..  ...     ......+|..+.|+|-+   ..|++ .+|+.|++||+... .++. .++....  
T Consensus       102 ~~~~~~~~q~~ty~l--~~~-----~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~--  171 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSI--DEE-----EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN--  171 (452)
T ss_dssp             CHHHHHTTEEEEEEG--GGC-----C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS--
T ss_pred             ccccccccceeEEEc--CCc-----ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc--
Confidence                  111  1221  000     01125689999999854   45665 46799999999752 2333 3331111  


Q ss_pred             cccccccCCCCcceeeEEEEcCCCCEEEEEc--CCCcEEEE
Q 011368          359 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIF  397 (487)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~--~dg~i~iw  397 (487)
                          .+...+.+..+.+++|++++-.|...+  .+|.|+-.
T Consensus       172 ----~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          172 ----SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ----EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ----ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                011112234567999999887676644  77877643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.77  E-value=0.28  Score=43.97  Aligned_cols=133  Identities=11%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             CceeEEEe--CCC-CC-EEEEe-cCCeEEEEEccCC--C-ceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC
Q 011368          205 FNINSISN--NSD-CE-TFVSA-DDLRINLWNLEIS--D-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  276 (487)
Q Consensus       205 ~~v~~i~~--s~~-~~-~l~s~-~d~~i~iwd~~~~--~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  276 (487)
                      ..+..+++  +|. ++ ++++. .++.+..|++...  + ...+.+    +++. ..+.+..+...+.. ..|+.+-++.
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV----R~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~  201 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV----RAFK-MNSQTEGMAADDEY-GRLYIAEEDE  201 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE----EEEE-CSSCEEEEEEETTT-TEEEEEETTT
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE----EEec-CCCCcceEEEcCCC-CeEEEecccc
Confidence            45667777  774 44 45555 8899999998432  1 111111    1111 23467888999887 8999999987


Q ss_pred             eEEEEEccCCccc-cccceeecccccccCccccccccccceeEEEE--cCCCC-EEEEEe--CCeEEEEeCCCCCceeee
Q 011368          277 FVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQ-HLLSRD--YMNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       277 ~i~iwd~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~s~~--d~~i~iwd~~~~~~~~~~  350 (487)
                      .|..++.+..... ...+..+..           ......+..|++  .++++ ||++++  ++++.+||.....+.+..
T Consensus       202 GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          202 AIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             eEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            7777775522100 000111111           011235777777  56666 666554  489999999733666766


Q ss_pred             eecc
Q 011368          351 FKIH  354 (487)
Q Consensus       351 ~~~~  354 (487)
                      +...
T Consensus       271 f~Ig  274 (355)
T 3amr_A          271 FRIT  274 (355)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            6533

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.77  E-value=0.29  Score=44.12  Aligned_cols=118  Identities=11%  Similarity=0.022  Sum_probs=65.7

Q ss_pred             cCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC----CCCEEEEEe--C
Q 011368          202 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSS--S  274 (487)
Q Consensus       202 ~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~~~~--~  274 (487)
                      ..-...+.|+|.|+|+++++- ..|.|++++... +....+... +............|+++|+    + .+.++-+  .
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~  105 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRKTELGEV-PGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSAS  105 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSS
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcEeeeccc-CceeecCCCCceeeEeccccccCC-EEEEEEecCC
Confidence            334567899999999988888 599999998653 332222111 1122233456899999995    4 3333322  3


Q ss_pred             CCeEEEEEccCCc----cccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          275 RGFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       275 dg~i~iwd~~~~~----~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      ++.|.-|.+..+.    ........+..  . +.    -..|  .-..|+|.|||.+.++.
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~--~-p~----~~~H--~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRG--I-PK----GVIH--NGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEE--E-CC----CSSC--CCCCEEECTTSCEEEEC
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEc--C-CC----CCCc--cCccccCCCCCCEEEEE
Confidence            4455556555421    11111112221  0 00    0122  35679999999877763

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.65  E-value=0.3  Score=43.26  Aligned_cols=136  Identities=7%  Similarity=-0.038  Sum_probs=71.9

Q ss_pred             EeCCCCCEEEEec---CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEEEccCC
Q 011368          211 SNNSDCETFVSAD---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS  286 (487)
Q Consensus       211 ~~s~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~  286 (487)
                      .++++++.|+-+.   ++.-.||.+...+...+.+       ..+..    ..++|++ ..|+-.+. ...|..-++..+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l-------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI-------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEE-------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEE-------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence            5667888887653   4444444443223222221       11211    3467888 67776655 567777777665


Q ss_pred             ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C-CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368          287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      ...    +.+.+                ... ..+.|++.+|+-.+  + ..|..-++.  +.....+....        
T Consensus       178 ~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~--------  226 (302)
T 3s25_A          178 SEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN--------  226 (302)
T ss_dssp             EEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC--------
T ss_pred             CEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC--------
Confidence            421    22222                122 23569999888654  2 355555554  44344443211        


Q ss_pred             ccCCCCcceeeEEEEcCCCCEEEEEcC--CCcEEEEEeC
Q 011368          364 LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHG  400 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~--dg~i~iwd~~  400 (487)
                                 ...|+|++++|.-++.  .+.|..-++.
T Consensus       227 -----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          227 -----------IEHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             -----------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             -----------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence                       2347888888876533  3455555554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.64  E-value=0.4  Score=44.07  Aligned_cols=114  Identities=8%  Similarity=0.034  Sum_probs=70.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccc--cccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE--IIASISDIKFANDGQHLLSRDYMNLKLWD  340 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~s~~d~~i~iwd  340 (487)
                      .+| .-++.+- ++.||..++..... +   +.+..           +.  .-..+..+..+|+|++||..++..|.|-.
T Consensus        30 ~n~-t~i~~a~-~n~iR~~~i~~~~~-Y---k~L~~-----------~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~   92 (452)
T 3pbp_A           30 QNG-TRIVFIQ-DNIIRWYNVLTDSL-Y---HSLNF-----------SRHLVLDDTFHVISSTSGDLLCLFNDNEIFVME   92 (452)
T ss_dssp             TTT-TEEEEEE-TTEEEEEETTTCSS-C---EEEEC-----------TTTCCCCTTCEEEECTTSSEEEEECSSEEEEEE
T ss_pred             cCC-CEEEEEE-CCEEEEEECCCCCc-c---eEEec-----------CcccccCceeEEEECCCCCEEEEecCCeEEEEE
Confidence            444 4444443 46788888774321 1   33333           00  01257889999999999998888999999


Q ss_pred             CCCCCcee-----------eeeecccccccccccccCCCCcceeeEEEEcC---CCCEEEEEcCCCcEEEEEeCCC
Q 011368          341 IRMDSTPV-----------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       341 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +.......           +.+.....        .. ..-..|..+.|+|   .+..|++-..|+.|++||+...
T Consensus        93 LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~-~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A           93 VPWGYSNVEDVSIQDAFQIFHYSIDEE--------EV-GPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             CCTTCSCCCCHHHHHTTEEEEEEGGGC--------C---CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             ecCccccCcccccccccceeEEEcCCc--------cc-CCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence            87321111           11111110        00 0011246999999   4668999999999999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.54  E-value=0.12  Score=47.17  Aligned_cols=114  Identities=13%  Similarity=0.016  Sum_probs=62.4

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC---CCCEEEEEeC---C--
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R--  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~---d--  275 (487)
                      -.....++|.|+|+++++-.++.|++++..  +. ..+...+  ...........|+++|+   +..+.++-+.   +  
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~--G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS--GK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECSS--CE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC--Cc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            345789999999986666666999998743  33 2222111  11222356789999997   4144444332   3  


Q ss_pred             --CeEEEEEccCCcc-ccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          276 --GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       276 --g~i~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                        ..|..|+...... .......+..  . +    .-..|  ....++|.|||.++++.
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~--~-~----~~~~h--~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDG--I-P----GAYIH--NGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEE--E-E----CCSSC--CCCCEEECTTSCEEEEC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEc--C-C----CCCCc--CCceEEECCCCcEEEEE
Confidence              5677777665410 1000011111  0 0    00112  34679999999877763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.19  E-value=0.48  Score=44.76  Aligned_cols=118  Identities=10%  Similarity=0.077  Sum_probs=63.1

Q ss_pred             CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC--CCCCcEEEEEEecC---CCCEEEEEeC---
Q 011368          204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPI---YCNLLAYSSS---  274 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~---~~~~l~~~~~---  274 (487)
                      -...+.|+|.|+|+++++- ..+.|++++... +....+.... ..+.  .....+..|+|+|+   +..+.++-+.   
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~-~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVP-EIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECT-TCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCC-ccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            3456799999999988887 445788887652 3332222221 1111  13456889999994   4144444332   


Q ss_pred             ---------CCeEEEEEccCCc-cccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          275 ---------RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       275 ---------dg~i~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                               ...|.-++...+. .+......+..  . +.    -..  .....|+|.|||.+.++..
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~--~-p~----~~~--H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG--L-PS----SKD--HQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE--E-CC----CSS--CCEEEEEECTTSCEEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEc--C-CC----CCC--CCCCeEeECCCCeEEEEEC
Confidence                     1345555554321 01111112221  0 00    011  2468999999998777643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.16  E-value=0.73  Score=41.86  Aligned_cols=30  Identities=7%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~  145 (487)
                      .....|+|  .++|..|+.+...+.|++++..
T Consensus        18 ~~P~~i~~--~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAF--LPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEE--CSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEE--cCCCCEEEEEeCCceEEEEeCC
Confidence            44688999  5788734455567888888753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.07  E-value=1.3  Score=43.80  Aligned_cols=203  Identities=7%  Similarity=-0.087  Sum_probs=105.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+..++|++.+..|+.+. ..+.|..++.++....                          ...+....         
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------------------------~~v~~~~~---------   83 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL---------   83 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------------------------EEEECSSC---------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------------------------EEEEeCCC---------
Confidence            34578999999777776665 4567888887654210                          11122211         


Q ss_pred             ccccceeEEEEEecC-CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          111 EIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                         .....|++.  . .+.++++-...+.|.+.+.++.....+..... .....+++.+..+.++....... ..+....
T Consensus        84 ---~~P~GlAvD--~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~Iavdp~~g~ly~tD~g~~-~~I~r~~  156 (619)
T 3s94_A           84 ---LSPDGLACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-DQPRAIALDPSSGFMYWTDWGEV-PKIERAG  156 (619)
T ss_dssp             ---SCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SCCCCEEEETTTTEEEEEECSSS-CEEEEEE
T ss_pred             ---CCcCeEEEE--ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-CCCceEEEecCCCeEEEeccCCC-CEEEEEE
Confidence               457888884  4 44555555678899999988765433332111 11234444444443333322111 1111111


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                      ++ +.....+....-...+.+++++++..|+.+  ..+.|...+++ +.....++       .+.......+++..+  .
T Consensus       157 ~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~-------~~~~~~P~gi~~~~~--~  225 (619)
T 3s94_A          157 MD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVV-------KGSLPHPFALTLFED--I  225 (619)
T ss_dssp             TT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC----------------CCCEEESSS--E
T ss_pred             CC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEE-------eCCCCCceEEEEeCC--E
Confidence            11 111222223334567899999987777776  67788888887 33222221       111112245566543  3


Q ss_pred             EEEEEeCCCeEEEEEccCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSA  287 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~  287 (487)
                      ++.+-...+.|...|..+++
T Consensus       226 ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          226 LYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEECTTTCSEEEEESSSCC
T ss_pred             EEEecCCCCEEEEEECCCCc
Confidence            44444456788888887765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.97  E-value=1.4  Score=43.51  Aligned_cols=200  Identities=11%  Similarity=-0.071  Sum_probs=110.2

Q ss_pred             CcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+..|+|++.+..|+.+. .++.|..+++++....                           ..+....          
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------------------~v~~~g~----------   79 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------------------HVVEFGL----------   79 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------------------EEEeCCC----------
Confidence            4578999999776666554 6678888887654321                           1111111          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        .....|++.+ ..++++++-...+.|.+.++++.....+..... .....++..+..+.++....... ..+.....+
T Consensus        80 --~~P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~iavdp~~G~lY~tD~g~~-~~I~r~~~d  154 (628)
T 4a0p_A           80 --DYPEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-DSPRALALDPAEGFMYWTEWGGK-PKIDRAAMD  154 (628)
T ss_dssp             --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-CCEEEEEEETTTTEEEEEECSSS-CEEEEEETT
T ss_pred             --CCcceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-CCcccEEEccCCCeEEEeCCCCC-CEEEEEeCC
Confidence              3356777742 334555555677889999987654433332222 22345555554444444332111 111111111


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                      . .....+ ...-...+.++++++++.|+.+  ..+.|...|++....  +++       .........+++.. + .++
T Consensus       155 G-~~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-------~~~l~~P~glav~~-~-~ly  221 (628)
T 4a0p_A          155 G-SERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-------ADDLPHPFGLTQYQ-D-YIY  221 (628)
T ss_dssp             S-CSCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-------EECCSCEEEEEEET-T-EEE
T ss_pred             C-CceEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-------eccCCCceEEEEEC-C-EEE
Confidence            1 111222 2234567899999987777777  678899999974333  222       11223356777765 3 455


Q ss_pred             EEEeCCCeEEEEEccCCc
Q 011368          270 AYSSSRGFVRLVDMRQSA  287 (487)
Q Consensus       270 ~~~~~dg~i~iwd~~~~~  287 (487)
                      .+-...+.|...|..+++
T Consensus       222 ~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          222 WTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EecCCCCEEEEEECCCCC
Confidence            555557788888865553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.95  E-value=0.18  Score=41.71  Aligned_cols=112  Identities=13%  Similarity=-0.083  Sum_probs=64.3

Q ss_pred             CceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCc--------EEEEEEecCCCCEEEEEeCCC
Q 011368          205 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--------ITSAEFHPIYCNLLAYSSSRG  276 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------v~~v~~~p~~~~~l~~~~~dg  276 (487)
                      ..+.+++|+|+|.+.++ .++.++-.+..+....         ..-+....        -.++.|.|+| .+.++  .||
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~---------~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG  107 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND---------NWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKD  107 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC---------CHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETT
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcc---------cccccccEecccccccceEEEECCCC-CEEEe--CCC
Confidence            47789999999987777 7777655554321110         00011111        3678899999 66666  569


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEe
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  340 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd  340 (487)
                      .|.-++..+...     ..+-. . .   ...-..-=..+..|.+.|+|.+.+.. ++.++-+.
T Consensus       108 ~iyr~~pP~~~~-----~~Wl~-~-a---~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~  160 (236)
T 1tl2_A          108 KLYKASPPQSDT-----DNWIA-R-A---TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKAL  160 (236)
T ss_dssp             EEEEESCCCSTT-----CCHHH-H-S---EEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred             EEEEeCCCcCCC-----Cceec-c-c---cEeccCCCCceEEEEECCCceEEEEe-CCcEEecC
Confidence            887776533211     11110 0 0   00000001357999999999988888 88765433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.67  E-value=1.2  Score=40.39  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=21.6

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEe
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFET   61 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~   61 (487)
                      ....|+|.|+|++|..+...|.|++++.
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            5689999999993444556799988874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.54  E-value=0.67  Score=38.37  Aligned_cols=116  Identities=7%  Similarity=-0.154  Sum_probs=61.6

Q ss_pred             cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCC
Q 011368          255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  334 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~  334 (487)
                      .+..++|+|+| .+.++  .+|.+.-.+..+...     ..+-. .. . ... -.+ -....++.|.|+|.+.++ +||
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~-s~-t-~IG-~~G-w~~F~a~~fD~~G~LYav-~dG  107 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMG-RA-K-KIG-NGG-WNQFQFLFFDPNGYLYAV-SKD  107 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHH-HC-E-EEE-CSC-GGGCSEEEECTTSCEEEE-ETT
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccc-cc-c-Eec-ccc-cccceEEEECCCCCEEEe-CCC
Confidence            46699999998 65555  777766555543211     11111 00 0 000 000 012578999999998888 779


Q ss_pred             eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368          335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  395 (487)
Q Consensus       335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~  395 (487)
                      .|+-++-.+.+.. .-+.. ...+       ....-.++..+.+.|+|.+.++.  |+.++
T Consensus       108 ~iyr~~pP~~~~~-~Wl~~-a~~v-------g~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          108 KLYKASPPQSDTD-NWIAR-ATEV-------GSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             EEEEESCCCSTTC-CHHHH-SEEE-------ECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEEEeCCCcCCCC-ceecc-ccEe-------ccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            9988876431211 00000 0000       00000123589999999877666  77743

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.47  E-value=1.2  Score=39.12  Aligned_cols=147  Identities=10%  Similarity=0.084  Sum_probs=70.5

Q ss_pred             CCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEEc
Q 011368          215 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  283 (487)
Q Consensus       215 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~  283 (487)
                      ++++++.| .+     ..+.+||..+.  ....+...+.....|    ..+.+  ++ .+++.|+.+     ..+.+||+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~  182 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGA----GLVVA--SG-VIYCLGGYDGLNILNSVEKYDP  182 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSC----EEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccc----eEEEE--CC-EEEEECCCCCCcccceEEEEeC
Confidence            46666665 32     35788888743  232221111111111    12222  55 777777654     45888998


Q ss_pred             cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCCceeeeeeccccc
Q 011368          284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      .+.+-.     ....   .+..       ......+.+  ++++++.|. +     ..+.+||+.+ .. -..+......
T Consensus       183 ~~~~W~-----~~~~---~p~~-------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~  243 (301)
T 2vpj_A          183 HTGHWT-----NVTP---MATK-------RSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTP  243 (301)
T ss_dssp             TTTEEE-----EECC---CSSC-------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSC
T ss_pred             CCCcEE-----eCCC---CCcc-------cccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCc
Confidence            875421     1111   1110       111122222  455666553 1     5789999875 32 2222211111


Q ss_pred             ccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS  403 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----g~i~iwd~~~~~  403 (487)
                      .          ..   .+++.. +++.++.|+.+     ..+.+||+++.+
T Consensus       244 r----------~~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          244 R----------CY---VGATVL-RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             C----------BS---CEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             c----------cc---eeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            1          00   122222 67777788765     357788887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.88  E-value=2.4  Score=39.20  Aligned_cols=167  Identities=6%  Similarity=0.038  Sum_probs=94.7

Q ss_pred             CCceeEEEeCCCCCEEEE-e---c----CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEe
Q 011368          204 DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS  273 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~  273 (487)
                      ...|.....+++.++++. |   .    .|.+.+|..+.. . .+       .+++|...-..+...  +....+++.+.
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~-sQ-------~ieGhaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-V-SQ-------PIEGHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-C-EE-------EECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-c-cc-------hheeeeeeeEEEecCCCCCCceEEEEEE
Confidence            466777888899888765 2   2    467889988832 2 22       246775544333322  11113455554


Q ss_pred             CC---CeEEEEEccCCc-cc-cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          274 SR---GFVRLVDMRQSA-LC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       274 ~d---g~i~iwd~~~~~-~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      ..   +.++|.++.... .. .-..+..+. ..++.      .-..-..++..|+.-..+..-+ .|.|.+||+.+ +.+
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe------~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~  292 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTC  292 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCE
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeee-eCCcc------cccCceeEEEecccCCEEEEEecCceEEEEeccc-cee
Confidence            43   789999885431 00 000011111 00110      1123445777887766666655 49999999998 888


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      +..-+.....+               +..+-+....-++.....|.|.--.++..
T Consensus       293 i~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          293 IYMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eeeecccCCce---------------EEecccCCCCcEEEEccCceEEEEEEccc
Confidence            77766555433               24444444455666668888777777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.57  E-value=6.2  Score=42.55  Aligned_cols=172  Identities=12%  Similarity=0.075  Sum_probs=93.0

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-------CC
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------RG  276 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg  276 (487)
                      ..+|.-=.|-. .+.|+--.+..|+.|++.....+.++++-. ..+.  +..|-.-..+++. ++++..+-       .|
T Consensus       105 ~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G  179 (1630)
T 1xi4_A          105 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVG  179 (1630)
T ss_pred             CCCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccc
Confidence            34566666653 345555567799999997433333332111 1122  3456667778887 77765442       47


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc--C-CCCEEEEEe----CCeEEEEeCCCC--Cce
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--N-DGQHLLSRD----YMNLKLWDIRMD--STP  347 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s--~-~~~~l~s~~----d~~i~iwd~~~~--~~~  347 (487)
                      .+.+|..+.+..     +.+++|             .+....+...  + ....++.+.    .+.+.|-++...  +.+
T Consensus       180 ~mQLyS~er~~s-----Q~iegh-------------a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~  241 (1630)
T 1xi4_A          180 AMQLYSVDRKVS-----QPIEGH-------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  241 (1630)
T ss_pred             eeeeeecccccc-----hhhhHh-------------HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC
Confidence            888888876542     455554             3333333332  1 122222221    168888888542  111


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ...-+.-.-.   ..+-..+|-.   .++..|+.-..+..-+.-|.|++||+.++..
T Consensus       242 ~f~kk~~~~~---~~~~~~~Dfp---v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          242 PFPKKAVDVF---FPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             CCcccccccc---CCcccccCcc---eEEEeccccCEEEEEecCceEEEEecccchh
Confidence            1100000000   0000111222   3788888888888899999999999999843

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.31  E-value=5.2  Score=40.60  Aligned_cols=172  Identities=10%  Similarity=-0.039  Sum_probs=90.3

Q ss_pred             CceeEEEeCCCCCEEEEecCCeEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011368          205 FNINSISNNSDCETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  283 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~  283 (487)
                      ..|.++.-..+|++.+...+| +..++..++. ..+..+......-.-....|.++.-.++| .+.+ |+ ++.|..||.
T Consensus       324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWi-gt-~~GL~~~~~  399 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWI-AT-DGSINRYDY  399 (758)
T ss_dssp             CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEE-EE-TTEEEEEET
T ss_pred             ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEE-Ee-CCcHhhcCc
Confidence            468888888888776665544 5566654321 11222111000001123468888888887 5444 45 457899998


Q ss_pred             cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCC----Ccee---eeeecccc
Q 011368          284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD----STPV---ATFKIHEH  356 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~----~~~~---~~~~~~~~  356 (487)
                      .+++..     .+.. ......     .....|.++...++|.+.+....+-|.++|..+.    ....   ..+.....
T Consensus       400 ~~~~~~-----~~~~-~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (758)
T 3ott_A          400 ATRQFI-----HYNI-VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG  468 (758)
T ss_dssp             TTTEEE-----EEEE-ECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGT
T ss_pred             CCCcEE-----Eeec-CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccc
Confidence            876532     1111 000000     0124688888888876555443467888885420    0111   11111111


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      .           ....|.++...++|.+.+.++..+-|..+|..++
T Consensus       469 l-----------~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~  503 (758)
T 3ott_A          469 L-----------SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR  503 (758)
T ss_dssp             C-----------SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred             c-----------ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence            0           0012358888888887764444456888898765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.06  E-value=5.8  Score=42.73  Aligned_cols=134  Identities=8%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             CCceeEEEeCCCCCEEEE-e-------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEe
Q 011368          204 DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS  273 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s-~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~  273 (487)
                      ...|.....+++.++++. |       -.|.+.+|.++....         +.++||...-..+...  +..+.+++.+.
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---------Q~iegha~~F~~~~~~~~~~~~~l~~f~~  220 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc---------hhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence            456777777888888764 2       247788888873221         2346665543333322  22113444333


Q ss_pred             C---CCeEEEEEccCC-ccccccceeecccccccCccc-ccc--ccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          274 S---RGFVRLVDMRQS-ALCDHSARILRDAAESHGSKS-FFT--EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       274 ~---dg~i~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~-~~~--~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .   .+.++|-++... ...    ..|..     .... .++  .-..-..++..++.-..+..-+ .|.|.+||+.+ +
T Consensus       221 ~~~~g~kLhi~Ei~~~~~~~----~~f~k-----k~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~  290 (1630)
T 1xi4_A          221 RGQAGGKLHIIEVGTPPTGN----QPFPK-----KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-G  290 (1630)
T ss_pred             ecCCCceEEEEecCCCccCC----CCCcc-----ccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc-c
Confidence            2   268888888543 100    11111     0000 000  0112334667776655555544 49999999998 7


Q ss_pred             ceeeeeecccc
Q 011368          346 TPVATFKIHEH  356 (487)
Q Consensus       346 ~~~~~~~~~~~  356 (487)
                      .++..-+....
T Consensus       291 ~~i~~~ris~~  301 (1630)
T 1xi4_A          291 TCIYMNRISGE  301 (1630)
T ss_pred             hhhhhccccCC
Confidence            76665554443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.83  E-value=4.4  Score=38.11  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=22.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCC
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~   64 (487)
                      ...+.|+|.|+|+++++-...+.|++++..++
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            35679999999997776544346877765433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.64  E-value=3.4  Score=36.18  Aligned_cols=22  Identities=14%  Similarity=0.373  Sum_probs=16.4

Q ss_pred             CCCEEEEEcCCC-----cEEEEEeCCC
Q 011368          381 DGLHFATGSYSN-----LLRIFSHGVG  402 (487)
Q Consensus       381 d~~~l~sg~~dg-----~i~iwd~~~~  402 (487)
                      +++.++.|+.++     .+.+||+.+.
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            677778887653     4888888766

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.45  E-value=3.7  Score=36.03  Aligned_cols=23  Identities=0%  Similarity=0.189  Sum_probs=17.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368          381 DGLHFATGSYS-----NLLRIFSHGVGS  403 (487)
Q Consensus       381 d~~~l~sg~~d-----g~i~iwd~~~~~  403 (487)
                      ++++++.|+.+     ..+.+||+.+.+
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            67788888854     468888888764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.38  E-value=3.2  Score=37.19  Aligned_cols=25  Identities=8%  Similarity=-0.124  Sum_probs=18.3

Q ss_pred             CCEEEEe-cCCeEEEEEccCCCceeE
Q 011368          216 CETFVSA-DDLRINLWNLEISDQCFN  240 (487)
Q Consensus       216 ~~~l~s~-~d~~i~iwd~~~~~~~~~  240 (487)
                      +..++++ .++.+.-.|+.++....+
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             CEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEE
Confidence            4566677 899999999986655443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.33  E-value=5.4  Score=37.57  Aligned_cols=60  Identities=13%  Similarity=0.034  Sum_probs=35.2

Q ss_pred             CceeEEEeCCCCC--EEEEecCCeEEEEEccCCCceeEEeecCCCCCC----CCCCcEEEEEEecC
Q 011368          205 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI  264 (487)
Q Consensus       205 ~~v~~i~~s~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~  264 (487)
                      ..-+.|+|.|++.  ++++-..|.|++++.........+.+++.....    ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3457899999985  555558899999975422111111111111111    12456889999996

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.19  E-value=4.2  Score=35.83  Aligned_cols=104  Identities=12%  Similarity=0.039  Sum_probs=57.4

Q ss_pred             EeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC--CeEEEEEccCC
Q 011368          211 SNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFVRLVDMRQS  286 (487)
Q Consensus       211 ~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--g~i~iwd~~~~  286 (487)
                      +++++++.|+-.  ....|...++. ++....+.       .   +... ..+.|++ ..|+-...+  ..|..-++..+
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~~~~l~-------~---~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTA-SQSEALFY-------D---CNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETT-TTEEEEEE-------C---SCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSC
T ss_pred             EeeEECCEEEEEeCCCceEEEEECC-CCCEEEEe-------C---CCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCCC
Confidence            456778888766  36778777776 33322221       1   1112 2356888 777776543  35555566554


Q ss_pred             ccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC---CeEEEEeCCCCCceeeee
Q 011368          287 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       287 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~~i~iwd~~~~~~~~~~~  351 (487)
                      ..     +.+..               ..+  ..|+|++++|.-+++   +.|..-++.  +.....+
T Consensus       218 ~~-----~~Lt~---------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l  261 (302)
T 3s25_A          218 NP-----VVLTE---------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKEL  261 (302)
T ss_dssp             CC-----EECSC---------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEE
T ss_pred             Ce-----EEEeC---------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEe
Confidence            32     22222               223  347888998886643   556666654  4444444

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.96  E-value=5.7  Score=36.76  Aligned_cols=216  Identities=13%  Similarity=0.084  Sum_probs=123.8

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      +|..+.++.-. ..++.++|+++....+..                                                ..
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~------------------------------------------------~~  104 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAH------------------------------------------------TM  104 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEE------------------------------------------------EC
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcce------------------------------------------------ec
Confidence            35556666554 679999999987655442                                                12


Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-------CC
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------RG  276 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg  276 (487)
                      ...|..=.|-. .+.|+--.+..|+-|++.....+.++++-. ..+.  ...|-.-..+++. ++++..+-       .|
T Consensus       105 ~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G  179 (494)
T 1bpo_A          105 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVG  179 (494)
T ss_dssp             SSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEE
T ss_pred             CCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccc
Confidence            33455556642 356666677899999998555566554322 1222  3567777788888 77775542       36


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEEEe----CCeEEEEeCCCCCceee
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSRD----YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s~~----d~~i~iwd~~~~~~~~~  349 (487)
                      .+.+|..+.+..     +.+++|             .+....+....+.   ..++.+.    .+.+.|-++......-.
T Consensus       180 ~mQLYS~er~~s-----Q~ieGh-------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~  241 (494)
T 1bpo_A          180 AMQLYSVDRKVS-----QPIEGH-------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  241 (494)
T ss_dssp             EEEEEESTTCCE-----EEECCS-------------EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred             eEEEeecccccc-----chheee-------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence            788998877542     566664             4444444333211   1222232    17899998854210000


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCcc
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  416 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v  416 (487)
                      .+......+ -..+...+|--   .++..|+.-..+..-+.-|.|++||++++. ....-+-..+++
T Consensus       242 ~f~kk~vdv-~fppe~~~DFP---vamqvs~kygviyviTK~G~i~lyDleTgt-~i~~nrIs~~~i  303 (494)
T 1bpo_A          242 PFPKKAVDV-FFPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETGT-CIYMNRISGETI  303 (494)
T ss_dssp             CCCCEEEEC-CCCTTSTTCCE---EEEEEETTTTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCE
T ss_pred             Cccceeeee-eCCcccccCce---eEEEecccCCEEEEEecCceEEEEecccce-eeeeecccCCce
Confidence            110000000 00000111222   488999988899999999999999999993 344444444433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.92  E-value=6.1  Score=34.69  Aligned_cols=147  Identities=11%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             CCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEEc
Q 011368          215 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  283 (487)
Q Consensus       215 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~  283 (487)
                      ++++++.| .+     ..+.+||..+.  ....+.    .+......-..+.+  ++ .+++.|+.+     ..+.+||+
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~  191 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVA----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP  191 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTT--EEEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCC--eEeECC----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence            56666665 32     46788888733  233221    11111111122222  55 777777654     45888888


Q ss_pred             cCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCCceeeeeeccccc
Q 011368          284 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      .+.+-.     ...   ..+..       ......+.+  ++++++.|. +     ..+.+||+.+ .. -..+......
T Consensus       192 ~~~~W~-----~~~---~~p~~-------r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~  252 (308)
T 1zgk_A          192 ERNEWR-----MIT---AMNTI-------RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHR  252 (308)
T ss_dssp             TTTEEE-----ECC---CCSSC-------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSC
T ss_pred             CCCeEe-----eCC---CCCCc-------cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCC
Confidence            775421     111   01111       111222333  556666553 1     5789999875 32 2222111111


Q ss_pred             ccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-----CcEEEEEeCCCC
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS  403 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-----g~i~iwd~~~~~  403 (487)
                      +          ..   .+++.. ++++++.|+.+     ..+.+||+.+.+
T Consensus       253 r----------~~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          253 R----------SA---LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             C----------BS---CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             c----------cc---eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1          00   133332 67777778754     357788887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.88  E-value=7.8  Score=33.91  Aligned_cols=27  Identities=7%  Similarity=0.246  Sum_probs=18.1

Q ss_pred             CCcEEEEEeCC------CcEEEEEccccceeEe
Q 011368          126 NGSMFILSTND------KTIKLWKVRDQKVKKI  152 (487)
Q Consensus       126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~  152 (487)
                      ++.+++.|+.+      ..+.+||..+.+....
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            56677777654      4578888887765543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.86  E-value=8.8  Score=34.49  Aligned_cols=27  Identities=4%  Similarity=-0.144  Sum_probs=17.0

Q ss_pred             CCCCEEEEEcCCC------cEEEEEeCCCCcee
Q 011368          380 GDGLHFATGSYSN------LLRIFSHGVGSAGG  406 (487)
Q Consensus       380 ~d~~~l~sg~~dg------~i~iwd~~~~~~~~  406 (487)
                      .++++++.|+.++      .|.++++++++...
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            4678888888653      35666887765443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.68  E-value=20  Score=38.30  Aligned_cols=121  Identities=9%  Similarity=0.118  Sum_probs=69.8

Q ss_pred             CEEEEEe----------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeE
Q 011368          267 NLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  336 (487)
Q Consensus       267 ~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i  336 (487)
                      .++++|+          ..|.|.+|++..+++     +.+..           ....+.+++++-- +| +|++|-...|
T Consensus       845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-----~lv~~-----------~~v~g~v~al~~~-~g-~Lla~ig~~l  906 (1158)
T 3ei3_A          845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-----QTVAE-----------KEVKGAVYSMVEF-NG-KLLASINSTV  906 (1158)
T ss_dssp             CEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-----EEEEE-----------EEESSCEEEEEEE-TT-EEEEEETTEE
T ss_pred             EEEEEEeeecCCCCCCCCceEEEEEEEECCEE-----EEEEE-----------EEcCCcCEEEeee-CC-EEEEEcCCEE
Confidence            6888886          247899999875432     22211           1124678887744 34 6666666899


Q ss_pred             EEEeCCCCCceee-eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc--C
Q 011368          337 KLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--K  413 (487)
Q Consensus       337 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~  413 (487)
                      ++|++.. .+.+. .......             +   ..+.....+.+|+.|..-..|.+...+........+..+  .
T Consensus       907 ~vy~l~~-~~~L~~~~~~~~~-------------i---~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~  969 (1158)
T 3ei3_A          907 RLYEWTT-EKELRTECNHYNN-------------I---MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP  969 (1158)
T ss_dssp             EEEEECT-TSCEEEEEEECCC-------------S---CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred             EEEECCC-CceEEEEeecccc-------------E---EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence            9999975 43333 1111111             0   122333357789999888888887766544444444433  3


Q ss_pred             CccccceEe
Q 011368          414 NENRKPILQ  422 (487)
Q Consensus       414 ~~v~~~~~~  422 (487)
                      .+++++.+-
T Consensus       970 ~~vta~~~l  978 (1158)
T 3ei3_A          970 NWMSAVEIL  978 (1158)
T ss_dssp             BCEEEEEEE
T ss_pred             ccEEEEEEE
Confidence            444555554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.48  E-value=19  Score=36.35  Aligned_cols=163  Identities=9%  Similarity=-0.024  Sum_probs=87.3

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCC----Ccee---EEeecCCCCCCC-CCCcEEEEEEecCCCCEEEEEeCC
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCF---NIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR  275 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~----~~~~---~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d  275 (487)
                      ...|.++...+++++.+....+-+.++|..+.    ...+   ..+..    ..+ ....|.++...++| .+.+.++..
T Consensus       418 ~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~i~~i~~d~~g-~lWi~~~t~  492 (758)
T 3ott_A          418 TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV----HNGLSGMFINQIIPDNEG-NVWVLLYNN  492 (758)
T ss_dssp             SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG----GGTCSCSCEEEEEECTTS-CEEEEETTC
T ss_pred             CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccc----ccccccceeeeEEEcCCC-CEEEEccCC
Confidence            34588888888877666556666788886521    0111   11100    011 22458999999988 766644444


Q ss_pred             CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeeccc
Q 011368          276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                      +.|..+|..+++..     .+.. ..       +. ....+.++....+|.+.++.. +-+..|+..+ .. ...+.. .
T Consensus       493 ~Gl~~~d~~~~~~~-----~~~~-~~-------~~-~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~-~~-~~~~~~-~  554 (758)
T 3ott_A          493 KGIDKINPRTREVT-----KLFA-DE-------LT-GEKSPNYLLCDEDGLLWVGFH-GGVMRINPKD-ES-QQSISF-G  554 (758)
T ss_dssp             SSEEEEETTTTEEE-----EECT-TT-------SC-GGGCEEEEEECTTSCEEEEET-TEEEEECC---CC-CCBCCC-C
T ss_pred             CCcEEEeCCCCceE-----EecC-CC-------cC-CCcccceEEECCCCCEEEEec-CceEEEecCC-Cc-eEEecc-c
Confidence            55888898775432     1111 00       00 024577888888888776554 5688888764 22 222211 1


Q ss_pred             ccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          356 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ...        ...   +.++... +|. |-.++.+| |..+|..+.+
T Consensus       555 gl~--------~~~---i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~  588 (758)
T 3ott_A          555 SFS--------NNE---ILSMTCV-KNS-IWVSTTNG-LWIIDRKTMD  588 (758)
T ss_dssp             C-----------CC---EEEEEEE-TTE-EEEEESSC-EEEEETTTCC
T ss_pred             CCC--------ccc---eEEEEEC-CCC-EEEECCCC-eEEEcCCCce
Confidence            100        011   2356553 565 44455555 7778887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.85  E-value=15  Score=32.99  Aligned_cols=114  Identities=14%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      .....|+|  .|+|.++++--..|.|++++..+++...+....                                     
T Consensus        32 ~~P~~ia~--~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~-------------------------------------   72 (347)
T 3das_A           32 NSPWGLAP--LPGGDLLVSSRDEATITRVDAKTGRKTELGEVP-------------------------------------   72 (347)
T ss_dssp             SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECT-------------------------------------
T ss_pred             CCceEEEE--cCCCcEEEEEecCCEEEEEECCCCcEeeecccC-------------------------------------
Confidence            45689999  578887666655899998876555432221100                                     


Q ss_pred             ceeeeecccCCCceeEEEeCCC---CCEEEEe----cCCeEEEEEccCCC-------ceeEEeecCCCCCCCCCCcEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSD---CETFVSA----DDLRINLWNLEISD-------QCFNIVDMKPSNMDDLTEVITSA  259 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~----~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~v  259 (487)
                          ............|+++|+   +..|+.+    .++.|.-|......       ....++...+. -..|.  ...|
T Consensus        73 ----~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~--g~~l  145 (347)
T 3das_A           73 ----GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHN--GGRI  145 (347)
T ss_dssp             ----TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCC--CCCE
T ss_pred             ----ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCcc--Cccc
Confidence                001334567889999995   3444432    45566666665311       11122211111 12343  3579


Q ss_pred             EEecCCCCEEEEEeC
Q 011368          260 EFHPIYCNLLAYSSS  274 (487)
Q Consensus       260 ~~~p~~~~~l~~~~~  274 (487)
                      .|.|+| .++++.+.
T Consensus       146 ~fgpDG-~Lyvt~Gd  159 (347)
T 3das_A          146 AFGPDK-MLYAGTGE  159 (347)
T ss_dssp             EECTTS-CEEEECBC
T ss_pred             cCCCCC-CEEEEECC
Confidence            999999 76666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=85.12  E-value=19  Score=31.48  Aligned_cols=64  Identities=9%  Similarity=0.057  Sum_probs=34.6

Q ss_pred             CCCEEEEe-cC-----CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----CeEEEEEc
Q 011368          215 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  283 (487)
Q Consensus       215 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~iwd~  283 (487)
                      ++++++.| .+     ..+.+||+.+.  ....+.    .+......-..+.+  ++ .+++.|+.+     ..+.+||+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMIT----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCC----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence            56666665 43     45888888733  333321    11111111122222  55 777777664     46889998


Q ss_pred             cCCc
Q 011368          284 RQSA  287 (487)
Q Consensus       284 ~~~~  287 (487)
                      .+.+
T Consensus       239 ~~~~  242 (308)
T 1zgk_A          239 ETET  242 (308)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.30  E-value=8.3  Score=34.49  Aligned_cols=27  Identities=7%  Similarity=0.074  Sum_probs=22.1

Q ss_pred             CcEEEEEeCCCcEEEEEccccceeEee
Q 011368          127 GSMFILSTNDKTIKLWKVRDQKVKKIK  153 (487)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~  153 (487)
                      +..++.++.||.|.-.|..+|+.+...
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~   36 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSI   36 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            347888999999999999998877654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.64  E-value=17  Score=34.81  Aligned_cols=80  Identities=15%  Similarity=0.079  Sum_probs=53.3

Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeE--EeecC---CCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMK---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      .....+..+|||++++.+  -+.++.++|+++-...+.  +++..   ....+ ..-.....+|.++| ....+.--|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence            344678889999999886  799999999984211000  00000   00111 23456889999998 76667778999


Q ss_pred             EEEEEccCC
Q 011368          278 VRLVDMRQS  286 (487)
Q Consensus       278 i~iwd~~~~  286 (487)
                      |.-|++...
T Consensus       401 vvkWni~~a  409 (638)
T 3sbq_A          401 VVKWNMEEA  409 (638)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEeccHH
Confidence            999999763

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.74  E-value=28  Score=31.63  Aligned_cols=157  Identities=8%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             eEEEEEccCCC-ceeEEeecCCCCCCCCCCcEEEEEEe---cC---CCCEEEEEe-CCCeEEEEEccCCccccccceeec
Q 011368          226 RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFH---PI---YCNLLAYSS-SRGFVRLVDMRQSALCDHSARILR  297 (487)
Q Consensus       226 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~---p~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~  297 (487)
                      .|.+||+.+.. +.++.+.++..... ....+..+.+.   |.   +..+.+.+. ..+.|.++|+.+++..    +...
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~  198 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH  198 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence            56677777541 55555554432333 24568888888   22   113333333 4678999999998765    4332


Q ss_pred             ccccccCcccc--cccc----ccceeEEEEcCC----CCEEEEEeCCeEEEEeCCCC----Cc---eeeeeecccccccc
Q 011368          298 DAAESHGSKSF--FTEI----IASISDIKFAND----GQHLLSRDYMNLKLWDIRMD----ST---PVATFKIHEHLRPK  360 (487)
Q Consensus       298 ~h~~~~~~~~~--~~~~----~~~v~~v~~s~~----~~~l~s~~d~~i~iwd~~~~----~~---~~~~~~~~~~~~~~  360 (487)
                      . ...+.....  ..|.    ...+..|+++|+    ++.|.-..-..-++|.+.+.    ..   .+..+ +.....  
T Consensus       199 ~-~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~--  274 (381)
T 3q6k_A          199 P-TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKY--  274 (381)
T ss_dssp             G-GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTT--
T ss_pred             C-CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCC--
Confidence            2 222221111  1111    247889999998    77777654333344444320    11   11111 111100  


Q ss_pred             cccccCCCCcceeeEEEEc-CCCCEEEEEcCCCcEEEEEeCC
Q 011368          361 LCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGV  401 (487)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~s-~d~~~l~sg~~dg~i~iwd~~~  401 (487)
                            .++    ..+++. .+|.++++--..+.|..|+..+
T Consensus       275 ------s~~----~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          275 ------NDA----IALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             ------CCE----EEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             ------CCc----ceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence                  011    256775 5777777777888999999875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.15  E-value=43  Score=33.42  Aligned_cols=157  Identities=10%  Similarity=0.027  Sum_probs=76.6

Q ss_pred             CCCEEEEe-cC------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC--eEEEEEccC
Q 011368          215 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ  285 (487)
Q Consensus       215 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~iwd~~~  285 (487)
                      ++++++.| .+      ..+.+||..+.  .+..+.    .+...... .+++...++ .+++.|+.++  .+.+||..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~--~W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTT--EEEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCC--cEEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence            56677765 32      35778888742  333221    11111111 122222366 7888887654  688999888


Q ss_pred             CccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEeC--------CeEEEEeCCCCCc--e--eeeee
Q 011368          286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDST--P--VATFK  352 (487)
Q Consensus       286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~d--------~~i~iwd~~~~~~--~--~~~~~  352 (487)
                      ..-.     ........+.       .......+.+..+ +++++.|+.        +.+.+||+.+...  .  -..+.
T Consensus       523 ~~W~-----~~~~~g~~p~-------~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~  590 (695)
T 2zwa_A          523 EIFK-----DVTPKDEFFQ-------NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL  590 (695)
T ss_dssp             TEEE-----ECCCSSGGGG-------SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE
T ss_pred             CceE-----EccCCCCCCC-------cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC
Confidence            5421     1110000010       0122234555555 555555531        4688999876321  0  11111


Q ss_pred             cc-cccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC--------CcEEEEEeCCCCc
Q 011368          353 IH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSA  404 (487)
Q Consensus       353 ~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d--------g~i~iwd~~~~~~  404 (487)
                      .. ...+.          -   .+++...++++++.|+.+        ..+.+||+.+..-
T Consensus       591 ~~p~~~R~----------~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          591 QHPLFQRY----------G---SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             ECGGGCCB----------S---CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             CCCCCCcc----------c---ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            11 11110          0   134444347777878743        4688999887643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.07  E-value=26  Score=36.56  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368          255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      .+.+++..++. .++++-+.|+++|+|++.+++++
T Consensus       237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v  270 (950)
T 4gq2_M          237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV  270 (950)
T ss_dssp             CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred             eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence            56777888887 89999999999999999998765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.17  E-value=30  Score=32.52  Aligned_cols=29  Identities=14%  Similarity=0.059  Sum_probs=22.9

Q ss_pred             cEEEEEEecCCCC-EEEEEeCCCeEEEEEcc
Q 011368          255 VITSAEFHPIYCN-LLAYSSSRGFVRLVDMR  284 (487)
Q Consensus       255 ~v~~v~~~p~~~~-~l~~~~~dg~i~iwd~~  284 (487)
                      ..+.|+|.|+| . .|+++...|.|++++..
T Consensus        15 ~P~~~a~~pdG-~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDG-SQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSS-SCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCC-CeEEEEEeCCceEEEEeCC
Confidence            45889999998 5 46666788999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	487
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 47/369 (12%), Positives = 112/369 (30%), Gaps = 48/369 (13%)

Query: 33  DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91
            +V  ++F   G+YLA G ++  +V            +   + ++            PE 
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK-----------DPEN 111

Query: 92  RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK 151
              +   S +              I  V +   P+G        D+ I++W + ++K+  
Sbjct: 112 LNTSSSPSSD------------LYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVM 157

Query: 152 IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSIS 211
           I +       S +       +     +          +      +            ++S
Sbjct: 158 ILQGHEQDIYSLDYF----PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213

Query: 212 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 271
                     + D  + +W+ E +      +D +  +     + + S  F       +  
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVS 271

Query: 272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS- 330
            S    V+L +++     + + +       S   +  +      +  +    + +++LS 
Sbjct: 272 GSLDRSVKLWNLQ-----NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 331 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 390
                +  WD +    P+   + H +    +     N S           +   FATGS 
Sbjct: 327 SKDRGVLFWDKK-SGNPLLMLQGHRN--SVISVAVANGSSL-------GPEYNVFATGSG 376

Query: 391 SNLLRIFSH 399
               RI+ +
Sbjct: 377 DCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 21/301 (6%)

Query: 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162
           + +  KSL+    +  V++  + +G  ++ +  +KT ++++V D  +      D      
Sbjct: 52  DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 163 SENTLLAEKNFMNEHNP-----PSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCE 217
            EN   +     + +       P             +      +     I          
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 218 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277
                   ++   + + + + +++   + S    + + +T+    P     +A  S    
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 337
           VR+ D     L +                   T    S+  + F  DGQ ++S       
Sbjct: 229 VRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 338 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 397
                 ++   +  K       ++  + + D +      + + +  +  +GS    +  +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS---VATTQNDEYILSGSKDRGVLFW 335

Query: 398 S 398
            
Sbjct: 336 D 336

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 35/324 (10%), Positives = 88/324 (27%), Gaps = 63/324 (19%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--------IKEMDHFPFVSSE 164
              + RV +   P  S+ + ++ D TIK+W       ++        ++++         
Sbjct: 17  RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 165 NTLLAEKNFMNEHNP-----------------------------PSFAHGYHLEWTENMA 195
            +  A+                                       S      +   +   
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 196 TKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 254
                  H   +  +  N D     S  +D  + +W +   +    + + +         
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---- 190

Query: 255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 314
           +  + E      +    S ++   +      S   D + ++      +            
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDN 248

Query: 315 SISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 373
            +  + F + G+ +LS  D   L++WD + +   + T   HE              +   
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHE------------HFVTS- 294

Query: 374 FECSVSGDGLHFATGSYSNLLRIF 397
                     +  TGS    ++++
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 36/304 (11%), Positives = 84/304 (27%), Gaps = 36/304 (11%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-----FVSSENTL 167
             KI  + W    +  + + ++ D  + +W            +         +  S N +
Sbjct: 55  LAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRI 227
                              ++  +  +A      +    ++     +       A     
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 228 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL------LAYSSSRGFVRLV 281
                         V       D    V  + +      ++        ++     +  +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 282 DMRQ------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM 334
                     +   D + R+    A+          II  I+ + F+  G+ LL+  D  
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

Query: 335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 394
           N  +WD    +        H+            + +       V+ DG+  ATGS+ + L
Sbjct: 293 NCNVWDAL-KADRAGVLAGHD------------NRVSC---LGVTDDGMAVATGSWDSFL 336

Query: 395 RIFS 398
           +I++
Sbjct: 337 KIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 41/356 (11%), Positives = 91/356 (25%), Gaps = 45/356 (12%)

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
            +G K   + H++     + + F     P+         H      + +L   E +  V 
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFP----PDALIGPGIPRH---ARQINTLNHGEVVCAVT 58

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDHFPFVSS-----ENTLLAEK 171
                     + +     +K+W +        V ++  ++   ++ S     +   L   
Sbjct: 59  IS--NPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

Query: 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN 231
              +  +    A        E  ++    +A   + +S    S C     A     N   
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175

Query: 232 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 291
           +       +       + D         +      +L      +       +     C  
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235

Query: 292 SARILRDAAESHGSKSFFTEII--------ASISDIKFANDGQHLLSRDY-MNLKLWDIR 342
              +      S+       +          + +  +KFA  G+  +S      L  W   
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

Query: 343 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 398
                +   K                S+     C +S D  +  TGS      ++ 
Sbjct: 296 -YGASIFQSKES-------------SSVLS---CDISVDDKYIVTGSGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 40/371 (10%), Positives = 95/371 (25%), Gaps = 68/371 (18%)

Query: 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176
           + V  C    G+  +  ++D T+K+W     K  +     H   V S           + 
Sbjct: 17  DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWS-------SQMRDN 68

Query: 177 HNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 236
                        W       ++      +     +  +      + D  + +W++E   
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 237 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 296
               ++    +                     +   +    V++ D       +     L
Sbjct: 129 CLHVLMGHVAAVR-----------CVQYDGRRVVSGAYDFMVKVWDPE----TETCLHTL 173

Query: 297 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 356
           +       S  F    + S S      D          ++++WD+               
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSL-----DT---------SIRVWDVET------------- 206

Query: 357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 416
                 +  +  +        +        +G+  + ++I+    G          K+++
Sbjct: 207 -----GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 261

Query: 417 RKPILQAAPRARRSS-------LSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 469
               LQ       +S       L +L  G + +      SG           +  +    
Sbjct: 262 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS------GGVVWRIRASN 315

Query: 470 TTNLIACANGN 480
           T  + A  + N
Sbjct: 316 TKLVCAVGSRN 326

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 23/273 (8%), Positives = 62/273 (22%), Gaps = 42/273 (15%)

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           +  +   S  +  + D  +K+W                      +  L +     + +  
Sbjct: 18  FSVSACNSFTVSCSGDGYLKVW----------------------DNKLLDNENPKDKSYS 55

Query: 181 SFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 239
            F H            K   H  D       +  +     +      +  + +   D+  
Sbjct: 56  HFVH------------KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 103

Query: 240 NIVDMKPSNMD------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 293
            ++  K   +D          +   A    +  + L  +  +G   +      A   +S 
Sbjct: 104 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163

Query: 294 RILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 352
            +      E  G+           + +  +  G      +   +++ ++           
Sbjct: 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES 223

Query: 353 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 385
            H  +           S                
Sbjct: 224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 37/369 (10%), Positives = 92/369 (24%), Gaps = 38/369 (10%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK-----NTPNQHISRSELEKQMDFTSTS 87
            +++ ++F+   +Y+  G     + +++++  K     +  +  +   +        S S
Sbjct: 14  SVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS 71

Query: 88  HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 147
                   + +       +         +  +      N    +  + D T+ +WK+  +
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 148 KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNI 207
                   +H   +                      H   +         V   ++D  +
Sbjct: 129 SSVPDHGEEHDYPLVFHT-----PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 208 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 267
                      ++    L  +   +  +           ++MD    +        +Y  
Sbjct: 184 IVWDVAQMKCLYI----LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239

Query: 268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 327
               +             SA  D S R       S       T + A  +   F      
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT---FYVSDNI 296

Query: 328 LLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 387
           L+S       ++++R      A                  D I+     +  G  L  A 
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKD------------ADQIWS---VNFKGKTL-VAA 340

Query: 388 GSYSNLLRI 396
                   +
Sbjct: 341 VEKDGQSFL 349

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 30/308 (9%), Positives = 67/308 (21%), Gaps = 33/308 (10%)

Query: 114 EKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171
            +I  VR     +  +  +        + ++  R  K +K +E     F    +      
Sbjct: 43  LRIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD------ 94

Query: 172 NFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN 231
                    +          E     V   + +  I   + + +            +   
Sbjct: 95  RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP-LKHGET 153

Query: 232 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALC 289
                Q  ++ DM+   +   T   +             L Y S R      D       
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 290 DHSARILRDAAESHGSKSFF------TEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 343
                         GS +            A   D+         ++ D  + ++     
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 344 DSTPVATFKIHEHLRPKLCDLYNNDSIF--------------DKFECSVSGDGLHFATGS 389
            S  + +  +H               +               +  +  +S D        
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK 333

Query: 390 YSNLLRIF 397
               +  F
Sbjct: 334 DDGKIYTF 341

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 35/301 (11%), Positives = 85/301 (28%), Gaps = 25/301 (8%)

Query: 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS--- 163
           L+ +    + ++  +C   +    +    D TIK+W     + K+I    H   V     
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY 63

Query: 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNS------DCE 217
           +  ++   +  +         G  L    +    V     +  +    +        D  
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 218 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 277
           +       R+ + +    +          S   D T  + +         L  +      
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 278 VRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN- 335
           ++  D    S   D++ R+     +                      D + ++S  Y   
Sbjct: 184 LQYRDRLVVSGSSDNTIRLW----DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 336 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 395
           +K+WD+     P    +           + ++  +F      +  D     + S+ + + 
Sbjct: 240 IKVWDLVAALDP----RAPAGTLCLRTLVEHSGRVF-----RLQFDEFQIVSSSHDDTIL 290

Query: 396 I 396
           I
Sbjct: 291 I 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	487
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.02
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.88
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.81
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.74
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.56
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.42
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.35
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.83
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.62
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.46
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.09
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.86
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.37
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.26
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.67
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.28
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.46
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.62
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.53

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-40  Score=303.06  Aligned_cols=286  Identities=15%  Similarity=0.192  Sum_probs=229.9

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..+.|.+.|+|++|+|+|++||+|+ ||.|+|||+.+....                      .........+|.     
T Consensus        46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~----------------------~~~~~~~~~~h~-----   97 (337)
T d1gxra_          46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD-----   97 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT-----
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc----------------------ceeEEeeecCCC-----
Confidence            3557999999999999999999997 799999998876532                      122234456777     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             +.|.+++|  +|++++|++++.|+.|++||+.........                                 
T Consensus        98 -------~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------------------  135 (337)
T d1gxra_          98 -------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKA---------------------------------  135 (337)
T ss_dssp             -------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEE---------------------------------
T ss_pred             -------CcEEEEEE--cCCCCEEEEeeccccccccccccccccccc---------------------------------
Confidence                   88999999  688999999999999999998765432211                                 


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  .+..|...+.+++|+|++..++++ .|+.|++|++.+. .....       ..+|...|.+++|++++
T Consensus       136 ------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~-~~~~~-------~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         136 ------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQ-------FQGHTDGASCIDISNDG  195 (337)
T ss_dssp             ------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE-------ECCCSSCEEEEEECTTS
T ss_pred             ------------cccccccccccccccccccccccccccccccccccccc-ccccc-------ccccccccccccccccc
Confidence                        136788999999999999999999 9999999999844 33332       45788999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  344 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~  344 (487)
                       ..+++++.|+.+++||+++++.+    +.+.              |...|.+++|+|++++|++++ ++.+++||++. 
T Consensus       196 -~~~~~~~~d~~v~i~d~~~~~~~----~~~~--------------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~-  255 (337)
T d1gxra_         196 -TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-  255 (337)
T ss_dssp             -SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-
T ss_pred             -cccccccccccccccccccceee----cccc--------------cccceEEEEEcccccccceeccccccccccccc-
Confidence             99999999999999999987643    3333              367899999999999999986 59999999986 


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeC
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  424 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  424 (487)
                      ... .....|...+               ++++|+|++++|++|+.||.|++||+.+++.. ..                
T Consensus       256 ~~~-~~~~~~~~~i---------------~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~-~~----------------  302 (337)
T d1gxra_         256 PDK-YQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQ----------------  302 (337)
T ss_dssp             SCE-EEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EE----------------
T ss_pred             ccc-cccccccccc---------------ceEEECCCCCEEEEEeCCCeEEEEECCCCCEE-EE----------------
Confidence            443 3444555533               69999999999999999999999999877331 11                


Q ss_pred             CccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          425 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                     ..|...|.+++|+||+++||+|+.|+ ++||.
T Consensus       303 -------------------------------~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         303 -------------------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             -------------------------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             -------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence                                           12445889999999999999998665 99996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-39  Score=304.80  Aligned_cols=322  Identities=19%  Similarity=0.311  Sum_probs=223.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ++|.+.|+||+|+|||++||+|+ |++|+|||+.+++..       ..+.....  ....+.........+|.       
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~-------  121 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-------ARLSDDSA--ANKDPENLNTSSSPSSD-------  121 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-------EEECC-------------------CCC-------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE-------eeeccccc--ccccccccccccccCCC-------
Confidence            46999999999999999999987 899999999877542       11100000  00000111112222343       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++++|++|+.|+.|++||...++....                                    
T Consensus       122 -----~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~~------------------------------------  158 (388)
T d1erja_         122 -----LYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMI------------------------------------  158 (388)
T ss_dssp             -----CBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE------------------------------------
T ss_pred             -----CCEEEEEE--CCCCCcceecccccccccccccccccccc------------------------------------
Confidence                 78999999  57899999999999999999988875543                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEec-CCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~  266 (487)
                                 ..+|...|.++++++++..++++ .++.+++||..+.. ....       . .+.....++.+.+ ++ 
T Consensus       159 -----------~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~-------~-~~~~~~~~~~~~~~~~-  217 (388)
T d1erja_         159 -----------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLT-------L-SIEDGVTTVAVSPGDG-  217 (388)
T ss_dssp             -----------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE-------E-ECSSCEEEEEECSTTC-
T ss_pred             -----------cccccccccccccccccccccccccceeeeeeeccccc-cccc-------c-ccccccccccccCCCC-
Confidence                       37899999999999999999999 99999999998443 3322       1 2334455666665 55 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.||.|++||.+++...    ..+..      ......+|...|.+++|+|++++|++++ |+.|++||++. .
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~----~~~~~------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~  286 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-A  286 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             CeEEEEcCCCeEEEeecccCccc----eeecc------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC-C
Confidence            99999999999999999987644    22221      1112346788999999999999999986 59999999975 3


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      ....................+...   +++++|+|++++|++|+.||.|++||+.++ ....++++|.+.|.++++.+  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~~~~--  360 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVAN--  360 (388)
T ss_dssp             ------------CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECS--
T ss_pred             ccccccccccccceeeecccccce---EEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEEec--
Confidence            322222111111000000111112   269999999999999999999999999988 45778899988888777764  


Q ss_pred             ccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          426 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                            .++|+||+++||+|+.|+ ++||+
T Consensus       361 --------------------------------------~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         361 --------------------------------------GSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             --------------------------------------SCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             --------------------------------------CcccCCCCCEEEEEeCCCEEEEEe
Confidence                                                  235788999999888654 88886

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-38  Score=295.81  Aligned_cols=340  Identities=13%  Similarity=0.153  Sum_probs=237.3

Q ss_pred             cCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      .++|+|++|+|+|++||+|+.||.|+||+.++++                         ......+++|.          
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~----------   51 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN----------   51 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS----------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCC----------
Confidence            5689999999999999999999999999998763                         34567889999          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                        ++|.+|+|  +|++++|++++.|++|++||+.++......                                      
T Consensus        52 --~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~~~~~~~~--------------------------------------   89 (371)
T d1k8kc_          52 --GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTL--------------------------------------   89 (371)
T ss_dssp             --SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEE--------------------------------------
T ss_pred             --CCEEEEEE--CCCCCEEEEEECCCeEEEEeeccccccccc--------------------------------------
Confidence              99999999  478999999999999999999877644321                                      


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             .+.+|...|.+++|+|+++.|+++ .|+.|++|+++.........    .....|...|.+++|+|++ .+|+
T Consensus        90 -------~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----~~~~~~~~~v~~v~~~p~~-~~l~  157 (371)
T d1k8kc_          90 -------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTVLSLDWHPNS-VLLA  157 (371)
T ss_dssp             -------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCEEEEEECTTS-SEEE
T ss_pred             -------ccccccccccccccccccccceeecccCcceeeeeeccccccccc----ccccccccccccccccccc-ccee
Confidence                   136788999999999999999999 99999999998554433221    2346788999999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCccccccceeeccccccc--CccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      +++.|+.|++||................ ...+  .......+|...|.+++|+|+|++|++++ |+.|++||+.. +..
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~  235 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWG-SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMA  235 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTB-SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-TTE
T ss_pred             ccccCcEEEEEeeccCcccccccccccc-ccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec-ccc
Confidence            9999999999999875432111000000 0000  11122356788999999999999999886 59999999987 788


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee-CCc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA-APR  426 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  426 (487)
                      +..+..|..++               ++++|+||+++|++|+ |+.+++|....... ...+..+........... ...
T Consensus       236 ~~~~~~~~~~v---------------~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  298 (371)
T d1k8kc_         236 VATLASETLPL---------------LAVTFITESSLVAAGH-DCFPVLFTYDSAAG-KLSFGGRLDVPKQSSQRGLTAR  298 (371)
T ss_dssp             EEEEECSSCCE---------------EEEEEEETTEEEEEET-TSSCEEEEEETTTT-EEEECCCCCCC--------CHH
T ss_pred             eeeeecccccc---------------eeeeecCCCCEEEEEc-CCceEEEEeeCCCc-eEEEeeeecCccccccccccce
Confidence            88888887654               6999999998887665 67777877765433 222322211111000000 000


Q ss_pred             cccccccceeeecccceecC-CCCCccccccccCCCeEEEEEcCCC----CEEEEecCC-eEEEEe
Q 011368          427 ARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTT----NLIACANGN-SLFFHY  486 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w-~~~~~~~~~~~~~~~v~~~~~spd~----~~la~~s~~-~~~i~~  486 (487)
                      ..      +....... ... ...........|...|+++++.|.+    ..|++++.| .++||+
T Consensus       299 ~~------~~~~~~~~-~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         299 ER------FQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             HH------HHHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ee------Eeccccee-EEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            00      00000000 001 0000111123588899999998865    358888855 499997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-37  Score=283.53  Aligned_cols=282  Identities=18%  Similarity=0.267  Sum_probs=234.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|.++|++|+|+|++++||+|+.||+|+|||+.+++.                           ..++++|.      
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~---------------------------~~~~~~h~------   59 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHT------   59 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCS------
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEEeCCC------
Confidence            345999999999999999999999999999999988765                           47788998      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|  ++++.++++++.++.+.+|+....+....                                   
T Consensus        60 ------~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------   96 (317)
T d1vyhc1          60 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT-----------------------------------   96 (317)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC-----------------------------------
T ss_pred             ------CcEEEEee--ecccccccccccccccccccccccccccc-----------------------------------
Confidence                  89999999  57899999999999999999887664433                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  +.+|...+.++.++|+++.++++ .|+.+++||++++. ....       +.+|...+.+++|+|++ 
T Consensus        97 ------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~-  155 (317)
T d1vyhc1          97 ------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKT-------FTGHREWVRMVRPNQDG-  155 (317)
T ss_dssp             ------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEE-------EECCSSCEEEEEECTTS-
T ss_pred             ------------cccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeE-------EccCCCcceeeecccCC-
Confidence                        36889999999999999999999 99999999999544 3332       46788899999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC--------------------CC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------------------GQ  326 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~--------------------~~  326 (487)
                      .+|++++.|+.|++|++.+++..    ..+..|             ...+.++.|+|+                    +.
T Consensus       156 ~~l~~~~~d~~v~~~~~~~~~~~----~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (317)
T d1vyhc1         156 TLIASCSNDQTVRVWVVATKECK----AELREH-------------RHVVECISWAPESSYSSISEATGSETKKSGKPGP  218 (317)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEE----EEECCC-------------SSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred             CEEEEEeCCCeEEEEeeccceee----EEEecC-------------CCCceEEEEeeccccceeeccccceeeeeccCCc
Confidence            99999999999999999987654    444442             455666666554                    45


Q ss_pred             EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          327 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       327 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                      ++++++ |+.|++||+++ ++++..+.+|...+               ++++|+|++++|++|+.||.|+|||+.+++. 
T Consensus       219 ~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-  281 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTLRVWDYKNKRC-  281 (317)
T ss_dssp             EEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEEEEECCTTSCC-
T ss_pred             eeEeccCCCEEEEEECCC-CcEEEEEeCCCCCE---------------EEEEECCCCCEEEEEECCCeEEEEECCCCcE-
Confidence            677775 69999999997 88999999888754               6899999999999999999999999987732 


Q ss_pred             eEEEeccCCccccceEeeCCccccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEE
Q 011368          406 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFF  484 (487)
Q Consensus       406 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i  484 (487)
                      ...+.+                                              |...|++++|+|++++||+|+.|+ ++|
T Consensus       282 ~~~~~~----------------------------------------------h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         282 MKTLNA----------------------------------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             CEEEEC----------------------------------------------CSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             EEEEcC----------------------------------------------CCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            334433                                              444788999999999999988765 888


Q ss_pred             Ee
Q 011368          485 HY  486 (487)
Q Consensus       485 ~~  486 (487)
                      |.
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            84

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-36  Score=275.83  Aligned_cols=289  Identities=12%  Similarity=0.125  Sum_probs=224.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      +.+.+.+++++|+|+.||.+. ++.|.+|++++.+.                           ...+.+|.         
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~---------------------------~~~~~~H~---------   58 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------------TEIYTEHS---------   58 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------------CEEECCCS---------
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce---------------------------eEEEcCCC---------
Confidence            455677899999999999885 56899999987755                           36788998         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         +.|++++|  +|+|++|++|+.|++|++||+.++.....                                      
T Consensus        59 ---~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~--------------------------------------   95 (311)
T d1nr0a1          59 ---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILK--------------------------------------   95 (311)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEE--------------------------------------
T ss_pred             ---CCEEEEEE--eCCCCeEeccccCceEeeeeeeccccccc--------------------------------------
Confidence               89999999  57899999999999999999988753321                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-c--CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                             ..+..|...|.+++|+|++++|+++ .  +..+++|++++... .       ..+.+|...|++++|+|++..
T Consensus        96 -------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~-------~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1          96 -------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-N-------GNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             -------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-C-------BCCCCCSSCEEEEEECSSSSC
T ss_pred             -------cccccccCccccccccccccccccccccccccccccccccccc-c-------cccccccccccccccccccee
Confidence                   1136789999999999999999887 4  56699999985443 2       356789999999999999844


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      .|++|+.|+.|++||+++++..    ..+..             |...|.++.|+|+++++++++ |+.|++||+.. +.
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~-~~  222 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFK----STFGE-------------HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GT  222 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CC
T ss_pred             eecccccccccccccccccccc----ccccc-------------ccccccccccCcccccccccccccccccccccc-cc
Confidence            6889999999999999987644    44444             478999999999999999886 69999999986 66


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc-cccceEeeCC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-NRKPILQAAP  425 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~  425 (487)
                      .+..+.......     ..+.+.   |++++|+|++++|++|+.||.|+|||++++ ....++..|... ...+.+.+. 
T Consensus       223 ~~~~~~~~~~~~-----~~h~~~---V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~~~~~~~~~~~~~~~~-  292 (311)
T d1nr0a1         223 KTGVFEDDSLKN-----VAHSGS---VFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIWT-  292 (311)
T ss_dssp             EEEECBCTTSSS-----CSSSSC---EEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEEC-
T ss_pred             cccccccccccc-----cccccc---ccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEECCCCccceEEEEEec-
Confidence            665554322110     011122   369999999999999999999999999988 456777776543 333344442 


Q ss_pred             ccccccccceeeecccce-ecCCC
Q 011368          426 RARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                       +..     +++++.||. ++|+.
T Consensus       293 -~~~-----l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         293 -KQA-----LVSISANGFINFVNP  310 (311)
T ss_dssp             -SSC-----EEEEETTCCEEEEET
T ss_pred             -CCE-----EEEEECCCEEEEEeC
Confidence             233     788888888 88843

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-36  Score=271.61  Aligned_cols=252  Identities=13%  Similarity=0.192  Sum_probs=204.1

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|+|++|+|+|++||+|+.||+|+|||+.+++..                         ....+.+|.       
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~-------  102 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS-------  102 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-------------------------ccccccccc-------
Confidence            468999999999999999999999999999999877532                         345678888       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeC--CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                           ++|.+++|  ++++++|++++.  +..+++|+++.++....                                  
T Consensus       103 -----~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~----------------------------------  141 (311)
T d1nr0a1         103 -----GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGTSNGN----------------------------------  141 (311)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCCBCBC----------------------------------
T ss_pred             -----Cccccccc--ccccccccccccccccccccccccccccccc----------------------------------
Confidence                 89999999  678999999875  56699999988764432                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCE-EEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                                   +.+|...|++++|+|++++ |++| .|+.|++||+++ .+....       +.+|...|+++.|+|+
T Consensus       142 -------------l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~-------~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         142 -------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKST-------FGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             -------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEE-------ECCCSSCEEEEEECTT
T ss_pred             -------------ccccccccccccccccceeeecccccccccccccccc-cccccc-------cccccccccccccCcc
Confidence                         3789999999999999885 7778 999999999994 444332       4678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM  343 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~  343 (487)
                      + ++|++++.|+.|++||++++...    ..+..      ......+|...|.+++|+|++++|++|+ |+.|+|||+++
T Consensus       201 ~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         201 G-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             c-ccccccccccccccccccccccc----ccccc------cccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            9 99999999999999999987643    33332      1122356789999999999999999986 69999999987


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                       ++++..+..+.....              ..+.+.+++.+|++++.||.|++||.+
T Consensus       270 -~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         270 -LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             -CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence             888888877654211              133444456689999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-35  Score=271.33  Aligned_cols=286  Identities=14%  Similarity=0.193  Sum_probs=223.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .+|.++|++++|+|++++||+|+.||+|+|||+.+++.                           +..+.+|.       
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~---------------------------~~~~~~~~-------   97 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS-------   97 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSC-------
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee---------------------------EEEEeccc-------
Confidence            35999999999999999999999999999999887654                           57788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  +|++.++++++.|+.+++|+.........                                    
T Consensus        98 -----~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~------------------------------------  134 (340)
T d1tbga_          98 -----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVR------------------------------------  134 (340)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCC------------------------------------
T ss_pred             -----ccEEeeEe--eccceeeeeecccceeecccccccccccc------------------------------------
Confidence                 89999999  68899999999999999999876542211                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                            .... +.+|...........+ ..+..+ .+.....+..........        ...+...+....+.+.+ .
T Consensus       135 ------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~  197 (340)
T d1tbga_         135 ------VSRE-LAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT--------FTGHTGDVMSLSLAPDT-R  197 (340)
T ss_dssp             ------EEEE-ECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEE--------EECCSSCEEEEEECTTS-S
T ss_pred             ------ccee-cccccccccccccccc-ccccccccccccccccccccccccc--------ccccceeEeeecccccc-c
Confidence                  1111 2566666666655544 455555 889999998874433222        23566778899999998 9


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      ++++++.|+.|++||+++++..    ..+..             |...|++++|+|++++|++|+ |+.|++||++. ..
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~----~~~~~-------------h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~-~~  259 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCR----QTFTG-------------HESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQ  259 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TE
T ss_pred             eeEEeecCceEEEEECCCCcEE----EEEeC-------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc-cc
Confidence            9999999999999999987654    55555             478999999999999999986 59999999986 66


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCc
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  426 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  426 (487)
                      .+..+.......             .++.++|+|++++|++|+.||.|++||+.+++. ...+.                
T Consensus       260 ~~~~~~~~~~~~-------------~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~----------------  309 (340)
T d1tbga_         260 ELMTYSHDNIIC-------------GITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLA----------------  309 (340)
T ss_dssp             EEEEECCTTCCS-------------CEEEEEECSSSCEEEEEETTSCEEEEETTTCCE-EEEEC----------------
T ss_pred             cccccccccccC-------------ceEEEEECCCCCEEEEEECCCEEEEEECCCCcE-EEEEc----------------
Confidence            655554332211             236899999999999999999999999987732 33333                


Q ss_pred             cccccccceeeecccceecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          427 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       427 ~~~~~~~~l~~g~~~~~~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                                                    +|..+|++++|+||+++||+|+.|+ ++||+
T Consensus       310 ------------------------------~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         310 ------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ------------------------------CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                                          3445788999999999999988654 88985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-35  Score=267.25  Aligned_cols=246  Identities=15%  Similarity=0.206  Sum_probs=191.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeee-cCCCccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY  106 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~  106 (487)
                      ..+|.++|++++|+|+|++||+|+.||+|++||+++++.                           ...+ .+|.     
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~h~-----   55 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------------------NRVFPDVHA-----   55 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EECSSCSCS-----
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------------EEEEcCCCC-----
Confidence            346999999999999999999999999999999987754                           2334 4677     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                             ..|.+++|  ++++. +++++.|+.+++|+.........                                  
T Consensus        56 -------~~v~~v~~--~~~g~-~~~~~~d~~v~~~~~~~~~~~~~----------------------------------   91 (299)
T d1nr0a2          56 -------TMITGIKT--TSKGD-LFTVSWDDHLKVVPAGGSGVDSS----------------------------------   91 (299)
T ss_dssp             -------SCEEEEEE--CTTSC-EEEEETTTEEEEECSSSSSSCTT----------------------------------
T ss_pred             -------CcEEEEEe--eccce-eecccceeeEEEeccCCcccccc----------------------------------
Confidence                   88999999  56765 56777899999999875432111                                  


Q ss_pred             eeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          187 HLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ......+...+.+++++|+++.++++.++.+++|+...   ....         .....+.+++|+|++ 
T Consensus        92 ----------~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~---------~~~~~~~~~~~s~~~-  148 (299)
T d1nr0a2          92 ----------KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEV---------PISYNSSCVALSNDK-  148 (299)
T ss_dssp             ----------SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEE---------ECSSCEEEEEECTTS-
T ss_pred             ----------cccccccccccccccccccccccccccccccccccccc---cccc---------ccccccccccccccc-
Confidence                      00124667889999999999988888778999998652   2221         123457899999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ++|++++.||.|++||+++++..    .. ..           ..|...|.+++|+|++++|++++ ++.|++||+.+ +
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~----~~-~~-----------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~-~  211 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVS----EV-KT-----------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN-N  211 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEE----EE-EE-----------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG-T
T ss_pred             ccccccccccccccccccccccc----cc-cc-----------ccccccccccccccccccccccccccccccccccc-c
Confidence            99999999999999999886532    11 11           23467899999999999999986 59999999976 4


Q ss_pred             cee---eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          346 TPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       346 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ...   ..+..|...+               ++++|+|++++|++|+.||.|++||++++..
T Consensus       212 ~~~~~~~~~~~h~~~v---------------~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         212 FELAHTNSWTFHTAKV---------------ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             TEESCCCCCCCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccc---------------ccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            333   3344555433               6899999999999999999999999987643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=262.83  Aligned_cols=241  Identities=18%  Similarity=0.259  Sum_probs=203.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ...|.+.|++++|+|+|++|++|+.||.|++||+....                         .+....+.+|.      
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~------  141 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-------------------------PRIKAELTSSA------  141 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------EEEEEEECSS------
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc-------------------------ccccccccccc------
Confidence            34688999999999999999999999999999987553                         23456677888      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|..++|  ++++.++++++.|+.|++|++.+++....                                   
T Consensus       142 ------~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~~~~~~~-----------------------------------  178 (337)
T d1gxra_         142 ------PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-----------------------------------  178 (337)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE-----------------------------------
T ss_pred             ------cccccccc--ccccccccccccccccccccccccccccc-----------------------------------
Confidence                  88999999  57899999999999999999998775443                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  ..+|...|.+++|+++++.++++ .|+.|++||+++. +.+..        ..|...|.+++|+|++ 
T Consensus       179 ------------~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~-~~~~~--------~~~~~~i~~l~~~~~~-  236 (337)
T d1gxra_         179 ------------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQ--------HDFTSQIFSLGYCPTG-  236 (337)
T ss_dssp             ------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEE--------EECSSCEEEEEECTTS-
T ss_pred             ------------ccccccccccccccccccccccccccccccccccccc-eeecc--------cccccceEEEEEcccc-
Confidence                        26789999999999999999999 9999999999844 44433        2467889999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.|+.+++||++++...     ...             .|...|.+++|+|++++|++++ |+.|++||+.+ +
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~~~-----~~~-------------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~-~  297 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPDKY-----QLH-------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-G  297 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCEE-----EEC-------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-C
T ss_pred             cccceeccccccccccccccccc-----ccc-------------ccccccceEEECCCCCEEEEEeCCCeEEEEECCC-C
Confidence            99999999999999999987532     222             3478899999999999999986 59999999987 7


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      +.+..+. |...+               ++++|+|++++|++|+.||+|+|||+
T Consensus       298 ~~~~~~~-~~~~v---------------~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         298 ASIFQSK-ESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEE-CSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CEEEEcc-CCCCE---------------EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            7776655 33322               69999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-33  Score=259.76  Aligned_cols=319  Identities=12%  Similarity=0.196  Sum_probs=234.1

Q ss_pred             ccccCcE-EEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V-~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      .+|.+.| +|++|  ++++||+|+.||+|+|||+.+++.                           +.++++|.      
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~---------------------------~~~l~~H~------   53 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------------LLQLSGHD------   53 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEE---------------------------EEEEECCS------
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEECCC------
Confidence            3587765 66665  578999999999999999876653                           68899999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ++|.+++|+  + +.+|++++.|++|++|++..........                                 
T Consensus        54 ------~~V~~l~~s--~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~---------------------------------   91 (355)
T d1nexb2          54 ------GGVWALKYA--H-GGILVSGSTDRTVRVWDIKKGCCTHVFE---------------------------------   91 (355)
T ss_dssp             ------SCEEEEEEE--T-TTEEEEEETTCCEEEEETTTTEEEEEEC---------------------------------
T ss_pred             ------CCEEEEEEc--C-CCEEEEEecccccccccccccccccccc---------------------------------
Confidence                  999999995  4 4689999999999999998876544321                                 


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCC---------------CCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS---------------NMDD  251 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~---------------~~~~  251 (487)
                                  ...+........+.++++.++++ .|+.|++||+...............               ....
T Consensus        92 ------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          92 ------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ------------CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ------------cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence                        12334445667778899999999 9999999999854322111000000               0112


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      |...+.  .+.+++ ++++++..|+.|++||+++++..    ..+..             +...+.++.++|++.+++++
T Consensus       160 ~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~~~~~  219 (355)
T d1nexb2         160 HMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILSG-------------HTDRIYSTIYDHERKRCISA  219 (355)
T ss_dssp             CSSCEE--EEEEET-TEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEEETTTTEEEEE
T ss_pred             cccccc--cccccc-ceeeeecccceeeeeecccccce----eeeec-------------cccccccccccccceeeecc
Confidence            233333  345667 89999999999999999987644    34443             35678999999999999988


Q ss_pred             e-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          332 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       332 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      + |+.|++||+++ +..+..+.+|...+               .+++++  +++|++|+.||.|++||++++   ...+.
T Consensus       220 ~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~  278 (355)
T d1nexb2         220 SMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFS  278 (355)
T ss_dssp             ETTSCEEEEETTT-CCEEEEECCCSSCC---------------CEEEEC--SSEEEEECTTSEEEEEETTTC---CEEEE
T ss_pred             cccceEEeeeccc-cccccccccccccc---------------cccccc--cceeeeeeccccccccccccc---ceecc
Confidence            6 59999999997 88889999888755               478876  469999999999999999876   34566


Q ss_pred             ccCCccccceEeeCCccccccccceeeecccce-ecCC--CCCccc-cccccCCCeEEEEEcCCCCEEEEecCCe-EEEE
Q 011368          411 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNS-LFFH  485 (487)
Q Consensus       411 ~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~--~~~~~~-~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~  485 (487)
                      .|...+..+.+.+. ++++     +++| .|+. ++|+  .++.+. ...+|..+|.+++|+|+ .++++++.|+ ++||
T Consensus       279 ~~~~~~~~~~~~~~-~~~~-----l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         279 YHHTNLSAITTFYV-SDNI-----LVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             EECTTCCCCCEEEE-CSSE-----EEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             cccCCceEEEEEcC-CCCE-----EEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            77777777766553 4454     5555 5777 9994  445543 45688899999999987 4677777554 6666

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-33  Score=262.58  Aligned_cols=260  Identities=15%  Similarity=0.238  Sum_probs=198.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|...|++++|+|+|++|++|+.||.|++|+...++.                           ...+.+|.       
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~---------------------------~~~~~~h~-------  163 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI---------------------------VMILQGHE-------  163 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-------
T ss_pred             cCCCCCEEEEEECCCCCcceeccccccccccccccccc---------------------------cccccccc-------
Confidence            35788899999999999999999999999999876643                           57788898       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|  ++++..+++++.++.+++||..+......                                    
T Consensus       164 -----~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~------------------------------------  200 (388)
T d1erja_         164 -----QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLT------------------------------------  200 (388)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE------------------------------------
T ss_pred             -----cccccccc--ccccccccccccceeeeeeeccccccccc------------------------------------
Confidence                 88999999  57889999999999999999987765443                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEe-CCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  ..+.....++.+ .+++++|+++ .|+.|++|+..+.. ....+........+|...|.+++|+|++ 
T Consensus       201 ------------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~-  266 (388)
T d1erja_         201 ------------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDG-  266 (388)
T ss_dssp             ------------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTS-
T ss_pred             ------------cccccccccccccCCCCCeEEEEcCCCeEEEeecccCc-cceeeccccccccCCCCCEEEEEECCCC-
Confidence                        223333445555 4588999999 99999999999544 4444333334456789999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+|++++.||.|++||++++....    .... ............|...|.+++|+|++++|++|+ ||.|++||+++ +
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~  340 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-G  340 (388)
T ss_dssp             SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-C
T ss_pred             CEEEEEECCCcEEEEeccCCcccc----cccc-ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC-C
Confidence            999999999999999998865331    1111 011111222455788999999999999999986 59999999997 8


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEE------EcCCCCEEEEEcCCCcEEEEEeC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECS------VSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      +++..+++|...+               ++++      |+|++++|++|+.||+|+||+++
T Consensus       341 ~~~~~l~~H~~~V---------------~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         341 NPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEeCCCCCE---------------EEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999998765               3554      57899999999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-32  Score=248.88  Aligned_cols=270  Identities=11%  Similarity=0.093  Sum_probs=198.4

Q ss_pred             CcEEEEEEcCCCCEEEEEecCC-cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (487)
                      ..+++++|+|+|+.|+.++.+. .|+.|+....                         .......+.+|.          
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-------------------------~~~~~~~~~gh~----------   62 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-------------------------KVPPVVQFTGHG----------   62 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCC-------------------------SSCSEEEECTTT----------
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-------------------------CccceEEEeCCC----------
Confidence            3568999999999999886543 2344543222                         222356677775          


Q ss_pred             cccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeee
Q 011368          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (487)
Q Consensus       112 ~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                       ...|++++|+|..++.+|++|+.||+|++||+..++........                                   
T Consensus        63 -~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~-----------------------------------  106 (325)
T d1pgua1          63 -SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN-----------------------------------  106 (325)
T ss_dssp             -TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE-----------------------------------
T ss_pred             -CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc-----------------------------------
Confidence             16799999987678899999999999999999876533221100                                   


Q ss_pred             ccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          192 ENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                         .... ...|.++|.+++|+++++.++++   .++.+.+|+.+++ ..+.       .+.+|...|.+++|+|+++.+
T Consensus       107 ---~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1         107 ---VKSE-FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-NSLG-------EVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             ---EEEE-EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-CEEE-------ECCSCSSCEEEEEECSSSSCE
T ss_pred             ---cccc-cccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-ccce-------eeeecccccccccccccccce
Confidence               0011 25788999999999999998875   4778999999854 4443       357899999999999998556


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC-CCEEEEEe-CCeEEEEeCCCCCc
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +++++.|+.+++||....+..    ..+..          ..+|...|.+++|+|+ +.++++++ |+.|++||+++ ++
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~----~~~~~----------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~  239 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFS----ASDRT----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GE  239 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEE----EEECS----------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CC
T ss_pred             EEEeecccccccccccccccc----eeccc----------ccCCCCccEEeeeccccceeccccccccceeeeeecc-cc
Confidence            788999999999999876533    22222          2345788999999997 67888875 69999999987 88


Q ss_pred             eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368          347 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                      .+..+.+|...+..        .   +++++| |||++|++++.|+.|+|||+++++ ....+..|.
T Consensus       240 ~~~~l~~~~~~v~~--------~---~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~  293 (325)
T d1pgua1         240 FLKYIEDDQEPVQG--------G---IFALSW-LDSQKFATVGADATIRVWDVTTSK-CVQKWTLDK  293 (325)
T ss_dssp             EEEECCBTTBCCCS--------C---EEEEEE-SSSSEEEEEETTSEEEEEETTTTE-EEEEEECCT
T ss_pred             cccccccccccccc--------c---eeeeec-cCCCEEEEEeCCCeEEEEECCCCC-EEEEEEecC
Confidence            88999888765421        0   124444 589999999999999999999873 344444443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7e-33  Score=258.76  Aligned_cols=231  Identities=10%  Similarity=0.103  Sum_probs=180.6

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ++|++++|  +|++++||+|+.|+.|++||..+++.....                                        
T Consensus         8 ~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~~~~~~~~----------------------------------------   45 (371)
T d1k8kc_           8 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVH----------------------------------------   45 (371)
T ss_dssp             SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEE----------------------------------------
T ss_pred             CCeEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCEEEEE----------------------------------------
Confidence            78999999  689999999999999999999877644331                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                          . +.+|.+.|++++|+|++++|++| .|++|++||+.... .....     .+.+|...|.+++|+|++ +.|+++
T Consensus        46 ----~-l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-~~~~~-----~~~~~~~~v~~i~~~p~~-~~l~~~  113 (371)
T d1k8kc_          46 ----E-LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-WKPTL-----VILRINRAARCVRWAPNE-KKFAVG  113 (371)
T ss_dssp             ----E-EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-EEEEE-----ECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred             ----E-ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc-ccccc-----cccccccccccccccccc-ccceee
Confidence                1 37899999999999999999999 99999999998443 22221     356788999999999999 999999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc-----
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST-----  346 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~-----  346 (487)
                      +.|+.|++|++............             ...|...|.+++|+|++++|++|+ |+.|++||......     
T Consensus       114 s~d~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~  180 (371)
T d1k8kc_         114 SGSRVISICYFEQENDWWVCKHI-------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA  180 (371)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEE-------------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             cccCcceeeeeeccccccccccc-------------ccccccccccccccccccceeccccCcEEEEEeeccCccccccc
Confidence            99999999998876532111112             234578999999999999999986 69999999864211     


Q ss_pred             ------------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          347 ------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       347 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                                  .+.....|..               .+.+++|+|++++|++++.|+.|++||+.++ .....+..|..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~  244 (371)
T d1k8kc_         181 PTPWGSKMPFGELMFESSSSCG---------------WVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASETL  244 (371)
T ss_dssp             CBTTBSCCCTTCEEEECCCCSS---------------CEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSC
T ss_pred             cccccccccceeeeeeccCccC---------------cEEEEEeecccccccccccCCcceEEeeecc-cceeeeecccc
Confidence                        1111222222               2369999999999999999999999999887 45667777777


Q ss_pred             ccccceEeeCCcccc
Q 011368          415 ENRKPILQAAPRARR  429 (487)
Q Consensus       415 ~v~~~~~~~~~~~~~  429 (487)
                      ++.+++|+|  ++++
T Consensus       245 ~v~s~~fs~--d~~~  257 (371)
T d1k8kc_         245 PLLAVTFIT--ESSL  257 (371)
T ss_dssp             CEEEEEEEE--TTEE
T ss_pred             cceeeeecC--CCCE
Confidence            777777776  4554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=246.23  Aligned_cols=310  Identities=13%  Similarity=0.156  Sum_probs=224.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      ..+|.+.|.+ +++++|++||||+.||+|+|||+.+++.                           +.++.+|.      
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~---------------------------~~~~~~h~------   57 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHT------   57 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCS------
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEEeCCC------
Confidence            4469988865 3666799999999999999999887754                           58899999      


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            ..|.+++|+  +  .+|++++.|+.+++|+..........                                  
T Consensus        58 ------~~V~~v~~~--~--~~l~s~s~D~~~~~~~~~~~~~~~~~----------------------------------   93 (342)
T d2ovrb2          58 ------GGVWSSQMR--D--NIIISGSTDRTLKVWNAETGECIHTL----------------------------------   93 (342)
T ss_dssp             ------SCEEEEEEE--T--TEEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred             ------CCEEEEEeC--C--Cccccceecccccccccccccceecc----------------------------------
Confidence                  899999994  3  38999999999999999876544321                                  


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                   ..+...+......  ...++.+ .|+.+.+|+..+.......        ......  .....+.. 
T Consensus        94 -------------~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~-  147 (342)
T d2ovrb2          94 -------------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL--------MGHVAA--VRCVQYDG-  147 (342)
T ss_dssp             -------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE--------ECCSSC--EEEEEECS-
T ss_pred             -------------cccceeEeeeecc--cccccccccceeEEEeecccccceeee--------eccccc--ceeecccc-
Confidence                         3344445444443  4566777 9999999999855443322        112222  22344455 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      ..+++++.|+.|++||.+.....    ..+..|             ...+  ..+++++.++++++ |+.|++||++. .
T Consensus       148 ~~~~~~~~d~~i~~~d~~~~~~~----~~~~~~-------------~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~-~  207 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPETETCL----HTLQGH-------------TNRV--YSLQFDGIHVVSGSLDTSIRVWDVET-G  207 (342)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEE----EEECCC-------------SSCE--EEEEECSSEEEEEETTSCEEEEETTT-C
T ss_pred             ceeeeecCCCeEEEeecccceee----EEEcCc-------------cccc--ccccCCCCEEEEEeCCCeEEEeeccc-c
Confidence            78999999999999999887644    445553             3344  44556788999886 69999999987 8


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc-eEeeC
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAA  424 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~  424 (487)
                      +++..+..|...+               .++++  ++++|++|+.||.|++||+.+.+. ...+..+......+ .+.+ 
T Consensus       208 ~~~~~~~~~~~~v---------------~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~-  268 (342)
T d2ovrb2         208 NCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQF-  268 (342)
T ss_dssp             CEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEE-
T ss_pred             eeeeEecccccce---------------eEEec--CCCEEEEEcCCCEEEEEecccccc-cccccccceeeeceeeccc-
Confidence            8888888887643               34555  567999999999999999988744 55565544333222 2222 


Q ss_pred             Cccccccccceeeecccce-ecCCC--CCccccc-----cccCCCeEEEEEcCCCCEEEEecCCe-----EEEEe
Q 011368          425 PRARRSSLSNLTRGLYRQA-HENSS--SGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS-----LFFHY  486 (487)
Q Consensus       425 ~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~-----~~~~~~v~~~~~spd~~~la~~s~~~-----~~i~~  486 (487)
                       ++.+     +++|+.|+. ++|+.  ++.+..+     .+|...|++++|+|++.+||+|+.|+     +++|.
T Consensus       269 -~~~~-----~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         269 -NKNF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             -CSSE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             -CCCe-----eEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence             2344     899999999 99943  4444332     35777899999999999999999776     77775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-31  Score=247.66  Aligned_cols=299  Identities=9%  Similarity=0.100  Sum_probs=195.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|.+.|+++++++  ++|++|+.|++|+|||..+.+..                    .| .........|.        
T Consensus        12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~--------------------~~-~~~~~~~~~~~--------   60 (393)
T d1sq9a_          12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE--------------------NP-KDKSYSHFVHK--------   60 (393)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC--------------------CG-GGGEEEEECCT--------
T ss_pred             cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCC--------------------cc-cceeEeeeecc--------
Confidence            5999999999875  69999999999999998766432                    00 11112222333        


Q ss_pred             cccccceeEEEE---Ee--cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          110 LEIEEKINRVRW---CA--APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       110 ~~~~~~I~~v~~---~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                          ..+..+..   .+  ..++.++++++.|+.|++|++.............                           
T Consensus        61 ----~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~---------------------------  109 (393)
T d1sq9a_          61 ----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK---------------------------  109 (393)
T ss_dssp             ----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE---------------------------
T ss_pred             ----CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccc---------------------------
Confidence                22222221   11  1123467789999999999987653221100000                           


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCC-----CCEEEEe-cCCeEEEEEccCCCce----------eEEeecCCCC
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQC----------FNIVDMKPSN  248 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~s~-~d~~i~iwd~~~~~~~----------~~~~~~~~~~  248 (487)
                                ........+...+..++|.++     +.+++++ .|+.+++|++......          ...+......
T Consensus       110 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (393)
T d1sq9a_         110 ----------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES  179 (393)
T ss_dssp             ----------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred             ----------cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceec
Confidence                      000001334556777777654     4677887 9999999998632210          0000011123


Q ss_pred             CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                      ...+...+.+++|+|++  +|++|+.||.|++||+++++.+    ..+..       ...+.+|..+|.+++|+|+|++|
T Consensus       180 ~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~-------~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         180 PMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES-------QHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             SSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC-------CC---CCCCCEEEEEECSSTTEE
T ss_pred             ccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc-------ccccccccceEEEccccccccee
Confidence            34556678999999986  8899999999999999987654    33332       12245678999999999999999


Q ss_pred             EEEe-CC---eEEEEeCCCCCceeeeeeccccccccccccc-CCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          329 LSRD-YM---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       329 ~s~~-d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      ++|+ |+   .|++||+++ +..+..+............+. +...   |++++|+||+++|++|+.|++|+|||++++ 
T Consensus       247 ~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~---V~~l~fspd~~~l~S~s~D~~v~vWd~~~g-  321 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSGETLCSAGWDGKLRFWDVKTK-  321 (393)
T ss_dssp             EEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSC---EEEEEECSSSSEEEEEETTSEEEEEETTTT-
T ss_pred             eeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCc---eeeeccCCCCCeeEEECCCCEEEEEECCCC-
Confidence            9985 44   599999987 777777653322211111111 1222   369999999999999999999999999998 


Q ss_pred             ceeEEEeccCCcccc
Q 011368          404 AGGITVEAGKNENRK  418 (487)
Q Consensus       404 ~~~~~~~~~~~~v~~  418 (487)
                      ....++.+|.+.|..
T Consensus       322 ~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         322 ERITTLNMHCDDIEI  336 (393)
T ss_dssp             EEEEEEECCGGGCSS
T ss_pred             CEEEEECCcCCcccC
Confidence            668899999998864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-31  Score=241.84  Aligned_cols=253  Identities=16%  Similarity=0.232  Sum_probs=190.3

Q ss_pred             cCcEEEEEEcC--CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        32 ~~~V~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      ...|++++|+|  +|++||+|+.||+|+|||+..++..       ..+            .......+..|.        
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~-------~~~------------~~~~~~~~~~~~--------  115 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------NSV------------EVNVKSEFQVLA--------  115 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------TEE------------EEEEEEEEECCS--------
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce-------eee------------eccccccccccc--------
Confidence            56899999998  5689999999999999999866532       000            111223455676        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEe--CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                          ++|.+++|  +++++++++++  .++.+++|+.++++....                                   
T Consensus       116 ----~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  154 (325)
T d1pgua1         116 ----GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-----------------------------------  154 (325)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCCEEEE-----------------------------------
T ss_pred             ----CcEEEEEE--CCCCCccceeeccccceEEEEeeccccccee-----------------------------------
Confidence                88999999  67889888775  477899999988765443                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCE-EEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                  +.+|...|.+++|+|++.. ++++ .|+.|++||..........     ....+|...|.+++|+|++
T Consensus       155 ------------~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-----~~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         155 ------------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-----RTHHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             ------------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-----CSSSCTTCCEEEEEECSTT
T ss_pred             ------------eeecccccccccccccccceEEEeecccccccccccccccceec-----ccccCCCCccEEeeecccc
Confidence                        3789999999999998875 5667 8999999998843322222     2456788899999999975


Q ss_pred             CCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc---CCCCEEEEEe-CCeEEEEeC
Q 011368          266 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---NDGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       266 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s---~~~~~l~s~~-d~~i~iwd~  341 (487)
                      ..+|++++.|+.|++||+++++..    ..+..|             ...+..+.|+   |+|++|++++ |+.|+|||+
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~~-------------~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFL----KYIEDD-------------QEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEE----EECCBT-------------TBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ceeccccccccceeeeeecccccc----cccccc-------------ccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            489999999999999999988754    566654             3444444443   6888999875 699999999


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      ++ ++++..+..+.......           ..++.+.++ .+|++|+.||.|++||+
T Consensus       281 ~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TT-SKCVQKWTLDKQQLGNQ-----------QVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TT-TEEEEEEECCTTCGGGC-----------EEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CC-CCEEEEEEecCCcccCe-----------EEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            97 88888887776543211           023444443 47899999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4.5e-30  Score=233.16  Aligned_cols=241  Identities=20%  Similarity=0.330  Sum_probs=205.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|.+++|+|++.+++++..++.+.+|+....+.                           ...+.+|.       
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~-------  101 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC---------------------------IRTMHGHD-------  101 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---------------------------EECCCCCS-------
T ss_pred             eCCCCcEEEEeeeccccccccccccccccccccccccc---------------------------cccccccc-------
Confidence            35889999999999999999999999999999765543                           45667777       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..+.++.|  .+++..+++++.|+.+++||+.+++....                                    
T Consensus       102 -----~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------------------------------------  138 (317)
T d1vyhc1         102 -----HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKT------------------------------------  138 (317)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred             -----ccceeeec--cCCCceEEeeccCcceeEeecccceeeeE------------------------------------
Confidence                 88999999  57889999999999999999998875543                                    


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC-
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-  266 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-  266 (487)
                                 +.+|...+.+++|+|++++|+++ .|+.|++|++..... ..       .+.+|...+.++.|+|++. 
T Consensus       139 -----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~-------~~~~~~~~i~~~~~~~~~~~  199 (317)
T d1vyhc1         139 -----------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KA-------ELREHRHVVECISWAPESSY  199 (317)
T ss_dssp             -----------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EE-------EECCCSSCEEEEEECCSCGG
T ss_pred             -----------EccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee-eE-------EEecCCCCceEEEEeecccc
Confidence                       36788999999999999999999 999999999995443 32       2457788888888887631 


Q ss_pred             ------------------CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          267 ------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       267 ------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                                        .++++++.|+.|++||+++++..    ..+.+             |...|.+++|+|++++|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l  262 (317)
T d1vyhc1         200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLVG-------------HDNWVRGVLFHSGGKFI  262 (317)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE----EEEEC-------------CSSCEEEEEECSSSSCE
T ss_pred             ceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE----EEEeC-------------CCCCEEEEEECCCCCEE
Confidence                              47899999999999999988754    55555             47899999999999999


Q ss_pred             EEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          329 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       329 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      ++|+ ||.|++||+++ ++++..+.+|...+               ++++|+|++++|++|+.||+|+|||
T Consensus       263 ~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V---------------~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         263 LSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCeEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9886 69999999987 88899999998754               6999999999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=8.9e-30  Score=233.64  Aligned_cols=305  Identities=8%  Similarity=-0.027  Sum_probs=203.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      ..|.+.|++|+|+|++++||+|+.||+|+|||++++..                       ..+ .....+|.       
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-----------------------~~~-~~~~~~h~-------   56 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------------------NVD-LLQSLRYK-------   56 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------------------EEE-EEEEEECS-------
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-----------------------ceE-EEEecCCC-------
Confidence            46899999999999999999999999999999987653                       112 22333577       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           .+|.+++|+| .++.+|++|+.|+.|++|++..+......                                   
T Consensus        57 -----~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~-----------------------------------   95 (342)
T d1yfqa_          57 -----HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQAL-----------------------------------   95 (342)
T ss_dssp             -----SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEEC-----------------------------------
T ss_pred             -----CCEEEEEEeC-CCCCEEEEcccccceeeeecccccccccc-----------------------------------
Confidence                 8999999975 45678999999999999999876544331                                   


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                                 ...+........+.++...++++ .++.+++||++............  .............+.+.+ .
T Consensus        96 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~  161 (342)
T d1yfqa_          96 -----------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKIFTMDTNS-S  161 (342)
T ss_dssp             -----------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCEEEEEECS-S
T ss_pred             -----------cccccccccccccccccccccccccccccceeeccccccceeeeccc--ccccccceeeeeeeeccC-C
Confidence                       12333334455566677888888 99999999987544333222111  111122334556677777 8


Q ss_pred             EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEc-CCCCEEEEEe-CCeEEEEeCCCCC
Q 011368          268 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD-YMNLKLWDIRMDS  345 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~s~~-d~~i~iwd~~~~~  345 (487)
                      .+++++.|+.|++||++.............              +...+.+..+. .++..+++++ +|.+.+|++....
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESG--------------LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECS--------------CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecc--------------cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            999999999999999987654321111111              13345555554 4567777775 6999999986421


Q ss_pred             cee-----eeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccce
Q 011368          346 TPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  420 (487)
Q Consensus       346 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  420 (487)
                      ...     ..+..+...      .........+++++|+|++++|++|+.||.|++||+++++. +..+..+ .....++
T Consensus       228 ~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~-l~~~~~~-~~~~~~~  299 (342)
T d1yfqa_         228 DDYNSSKRFAFRCHRLN------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKF-NEDSVVK  299 (342)
T ss_dssp             CSTTCTTCEEEECCCCC------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-EEECCCC-SSSEEEE
T ss_pred             ceeeccccceeeeeeec------cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE-EEEecCC-CCCEEEE
Confidence            111     111111110      01112233457999999999999999999999999998744 4445432 3344567


Q ss_pred             EeeCCccccccccceeeecccce-ecCCC
Q 011368          421 LQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       421 ~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      ++|  ++..     ++++..|.. ++|..
T Consensus       300 ~s~--~~~~-----l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         300 IAC--SDNI-----LCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEE--CSSE-----EEEEEECTHHHHCSS
T ss_pred             EEe--CCCE-----EEEEEcCCcEEEeee
Confidence            777  4555     777777777 88844

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.4e-29  Score=228.89  Aligned_cols=245  Identities=11%  Similarity=0.076  Sum_probs=179.7

Q ss_pred             eEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      ..++++||.            ++|++|+|  +|++++|++|+.|++|++||+.+++....                    
T Consensus         4 ~~~~~~GH~------------~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~--------------------   49 (299)
T d1nr0a2           4 IDQVRYGHN------------KAITALSS--SADGKTLFSADAEGHINSWDISTGISNRV--------------------   49 (299)
T ss_dssp             EEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEC--------------------
T ss_pred             cceEcCCCC------------CCcEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEE--------------------
Confidence            467899999            99999999  67899999999999999999998875543                    


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                                +...|...|++++|+|++++++++.|+.+++|+........     .......+
T Consensus        50 --------------------------~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~-----~~~~~~~~   98 (299)
T d1nr0a2          50 --------------------------FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS-----SKAVANKL   98 (299)
T ss_dssp             --------------------------SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT-----TSCCEEEC
T ss_pred             --------------------------EcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccc-----cccccccc
Confidence                                      22578999999999999987777799999999987432110     01112346


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  332 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~  332 (487)
                      ...+.+++|+|++ .++++++ ++.+++|+.....      ....               ...+.+++|+|++++|++|+
T Consensus        99 ~~~~~~~~~s~~g-~~~~~~~-~~~i~~~~~~~~~------~~~~---------------~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2          99 SSQPLGLAVSADG-DIAVAAC-YKHIAIYSHGKLT------EVPI---------------SYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             SSCEEEEEECTTS-SCEEEEE-SSEEEEEETTEEE------EEEC---------------SSCEEEEEECTTSCEEEEEE
T ss_pred             ccccccccccccc-ccccccc-ccccccccccccc------cccc---------------cccccccccccccccccccc
Confidence            6788999999998 7666554 5689999854321      2212               24678899999999999986


Q ss_pred             -CCeEEEEeCCCCCceee-eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce--eEE
Q 011368          333 -YMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GIT  408 (487)
Q Consensus       333 -d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~--~~~  408 (487)
                       ++.|++||+++ ..... ....|...+               ++++|+|++++|++++.|+.|++||+.++...  ...
T Consensus       156 ~dg~i~~~d~~~-~~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         156 QDSKVHVYKLSG-ASVSEVKTIVHPAEI---------------TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             TTSEEEEEEEET-TEEEEEEEEECSSCE---------------EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccc-ccccccccccccccc---------------ccccccccccccccccccccccccccccccccccccc
Confidence             59999999986 44332 233444433               69999999999999999999999999876432  234


Q ss_pred             EeccCCccccceEeeCCccccccccceeeecccce-ecCCC
Q 011368          409 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  448 (487)
Q Consensus       409 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~  448 (487)
                      +.+|..++.+++++|  ++.+     +++|+.|+. ++|+.
T Consensus       220 ~~~h~~~v~~l~~s~--~~~~-----l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         220 WTFHTAKVACVSWSP--DNVR-----LATGSLDNSVIVWNM  253 (299)
T ss_dssp             CCCCSSCEEEEEECT--TSSE-----EEEEETTSCEEEEET
T ss_pred             ccccccccccccccc--cccc-----eEEEcCCCEEEEEEC
Confidence            445566666666555  3444     566666655 56643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=223.98  Aligned_cols=270  Identities=12%  Similarity=0.209  Sum_probs=208.2

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|...|+|++|  ||++||+|+.||+|+|||+.+++.                           +.++++|.        
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~---------------------------~~~l~~H~--------   55 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------------KRILTGHT--------   55 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------------EEEECCCS--------
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEecCC--------
Confidence            46788999765  789999999999999999987754                           68899999        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          +.|.+++|    ++++|++|+.|+.|++|++..+......                                    
T Consensus        56 ----~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~------------------------------------   91 (293)
T d1p22a2          56 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTL------------------------------------   91 (293)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEE------------------------------------
T ss_pred             ----CCEeeeec----ccceeecccccccccccccccccccccc------------------------------------
Confidence                88999987    4679999999999999999987655431                                    


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                 ..+..  ....+.+....++++ .++.+.+|+..........     ..+..|...+..+.+.+   ..
T Consensus        92 -----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~---~~  150 (293)
T d1p22a2          92 -----------IHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNVVDFDD---KY  150 (293)
T ss_dssp             -----------CCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEEEEEET---TE
T ss_pred             -----------ccccc--ccccccccccceeecccccceeEeecccccccccc-----ccccccccccccceecc---cc
Confidence                       11222  222344456677777 9999999999855433322     13456788888887765   46


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      +++++.|+.|++||+++++..    ..+.+             +...+..+.++  +.+++++. |+.|++||+++ ...
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~  210 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GAC  210 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCE
T ss_pred             cccccCCCceeeecCCCCcEE----EEEcc-------------cccccccccCC--CCeEEEecCCCEEEEEeccc-cee
Confidence            889999999999999987654    44554             35567777665  56788775 69999999987 778


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC--------CceeEEEeccCCccccc
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------SAGGITVEAGKNENRKP  419 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~~  419 (487)
                      +..+..+...                 ...+++++.+|++|+.||.|++||+.+.        ......+.+|.++|.++
T Consensus       211 ~~~~~~~~~~-----------------v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         211 LRVLEGHEEL-----------------VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             EEEECCCSSC-----------------EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             eeeeccccee-----------------eeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence            8888777664                 3457788999999999999999998642        23467889999999999


Q ss_pred             eEeeCCccccccccceeeecccce-ecCC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      ++.+    ..     |++|+.|+. ++|+
T Consensus       274 ~~d~----~~-----l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         274 QFDE----FQ-----IVSSSHDDTILIWD  293 (293)
T ss_dssp             EECS----SC-----EEECCSSSEEEEEC
T ss_pred             EEcC----CE-----EEEEecCCEEEEeC
Confidence            8843    34     899999998 9883

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.1e-29  Score=227.57  Aligned_cols=244  Identities=23%  Similarity=0.373  Sum_probs=200.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      .|..+|++++|+|+++++++|+.|+.+++|+......                       ..+....+.+|.        
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~~~~~~~--------  143 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT--------  143 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS-----------------------CCCEEEEECCCS--------
T ss_pred             cccccEEeeEeeccceeeeeecccceeeccccccccc-----------------------ccccceeccccc--------
Confidence            4788999999999999999999999999999776543                       344556777887        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ........   ..+..+.....|.....+..........                                     
T Consensus       144 ----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  179 (340)
T d1tbga_         144 ----GYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTT-------------------------------------  179 (340)
T ss_dssp             ----SCEEEEEE---EETTEEEEEETTTEEEEEETTTTEEEEE-------------------------------------
T ss_pred             ----cccccccc---cccccccccccccccccccccccccccc-------------------------------------
Confidence                55555555   2356788888999999988776544332                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                ...+...+....+.+.+.+++++ .|+.|++||+++ .....       .+.+|...|++++|+|++ .+
T Consensus       180 ----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~-------~~~~h~~~i~~v~~~p~~-~~  240 (340)
T d1tbga_         180 ----------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ-------TFTGHESDINAICFFPNG-NA  240 (340)
T ss_dssp             ----------EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEE-------EECCCSSCEEEEEECTTS-SE
T ss_pred             ----------ccccceeEeeeccccccceeEEeecCceEEEEECCC-CcEEE-------EEeCCCCCeEEEEECCCC-CE
Confidence                      24667788999999999999999 999999999984 44443       356899999999999999 99


Q ss_pred             EEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCce
Q 011368          269 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  347 (487)
Q Consensus       269 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~  347 (487)
                      |++++.||.|++||++.....    ..+..           ..+...|.+++|+|++++|++|+ ||.|++||+.+ +++
T Consensus       241 l~s~s~d~~i~~~~~~~~~~~----~~~~~-----------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~  304 (340)
T d1tbga_         241 FATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK-ADR  304 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT-CCE
T ss_pred             EEEEeCCCeEEEEeecccccc----ccccc-----------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCC-CcE
Confidence            999999999999999987643    33322           22356799999999999999986 59999999987 889


Q ss_pred             eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          348 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      +..+.+|...+               ++++|+|++++|++|+.||.|+|||
T Consensus       305 ~~~~~~H~~~V---------------~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         305 AGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCCE---------------EEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999998755               6999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.1e-29  Score=230.68  Aligned_cols=295  Identities=12%  Similarity=0.147  Sum_probs=215.7

Q ss_pred             EeeecCCCcccccccccccccc-eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           94 KTEFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~-I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      ..+|+||.            .. |+|++|    ++++|++|+.|++|++||+.+++....                    
T Consensus         5 ~~tL~GH~------------~~vitc~~~----~~~~l~tgs~Dg~i~vWd~~~~~~~~~--------------------   48 (355)
T d1nexb2           5 RTTLRGHM------------TSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQ--------------------   48 (355)
T ss_dssp             EEEEECCS------------SSCEEEEEE----ETTEEEEEETTTEEEEEETTTTEEEEE--------------------
T ss_pred             cEEECCcC------------CCcEEEEEE----CCCEEEEEeCCCeEEEEECCCCcEEEE--------------------
Confidence            46799998            55 466666    467999999999999999998876544                    


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                                                 +.+|.+.|++++|+|+ .+|++| .|+.|++|+..... .....     ....
T Consensus        49 ---------------------------l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~-~~~~~-----~~~~   94 (355)
T d1nexb2          49 ---------------------------LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC-CTHVF-----EGHN   94 (355)
T ss_dssp             ---------------------------EECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE-EEEEE-----CCCS
T ss_pred             ---------------------------EECCCCCEEEEEEcCC-CEEEEEecccccccccccccc-ccccc-----cccc
Confidence                                       3789999999999986 578888 99999999998543 33221     1223


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCcccccccee------ecccccccCccccccccccceeEEEEcCCC
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI------LRDAAESHGSKSFFTEIIASISDIKFANDG  325 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~  325 (487)
                      +........+.+++ ..+++++.|+.|++||+++..........      ................|...+.  .+.+++
T Consensus        95 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~  171 (355)
T d1nexb2          95 STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHG  171 (355)
T ss_dssp             SCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEET
T ss_pred             cccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--cccccc
Confidence            34445667788888 99999999999999999876533111000      0000000000111122333333  345677


Q ss_pred             CEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCc
Q 011368          326 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  404 (487)
Q Consensus       326 ~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~  404 (487)
                      ++++++. |+.|++||+++ .+.+.....+....               ..+.++|++.++++++.|+.|++||+.++ .
T Consensus       172 ~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~  234 (355)
T d1nexb2         172 NIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCISASMDTTIRIWDLENG-E  234 (355)
T ss_dssp             TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEEEETTSCEEEEETTTC-C
T ss_pred             ceeeeecccceeeeeeccc-ccceeeeecccccc---------------ccccccccceeeecccccceEEeeecccc-c
Confidence            8888875 69999999987 77777777665533               58999999999999999999999999988 5


Q ss_pred             eeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEE-EEcCCCCEEEEecCCeE
Q 011368          405 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANGNSL  482 (487)
Q Consensus       405 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~-~~spd~~~la~~s~~~~  482 (487)
                      ....+.+|..++..+.+++    ..     +++|+.|+. ++|+..........|...+..+ ++++++.+|++|+++.+
T Consensus       235 ~~~~~~~h~~~v~~~~~~~----~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i  305 (355)
T d1nexb2         235 LMYTLQGHTALVGLLRLSD----KF-----LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF  305 (355)
T ss_dssp             EEEEECCCSSCCCEEEECS----SE-----EEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEE
T ss_pred             ccccccccccccccccccc----ce-----eeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEE
Confidence            5788999999999988864    34     899999999 9997766655556666666665 56788999999999899


Q ss_pred             EEEeC
Q 011368          483 FFHYA  487 (487)
Q Consensus       483 ~i~~~  487 (487)
                      +||+.
T Consensus       306 ~vwd~  310 (355)
T d1nexb2         306 NIYNL  310 (355)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-30  Score=229.58  Aligned_cols=262  Identities=15%  Similarity=0.118  Sum_probs=200.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .+|.++|++++|+|    |++|+.||+|++||+.++                                ..+|.       
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~-------   46 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------HQDHS-------   46 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------------------------ECCCC-------
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------------------------CCCCC-------
Confidence            45999999999997    999999999999996543                                45787       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                           ..|.+++|.   ++..+++++.|+++++|++...+                                        
T Consensus        47 -----~~V~~~~~~---~~~~~~s~s~D~~v~~w~~~~~~----------------------------------------   78 (287)
T d1pgua2          47 -----NLIVSLDNS---KAQEYSSISWDDTLKVNGITKHE----------------------------------------   78 (287)
T ss_dssp             -----SCEEEEECC---STTCCEEEETTTEEEETTEEEEE----------------------------------------
T ss_pred             -----CCEEEEEec---CCCeEEEEeeccccccccccccc----------------------------------------
Confidence                 889999983   34678999999999999986542                                        


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                    ....+.++++++++..++++.++.+.+|+.... .....+.        +...  ..++++++ ..
T Consensus        79 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~--~~~~~~~~-~~  132 (287)
T d1pgua2          79 --------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTG-DIIKSVR--------LNSP--GSAVSLSQ-NY  132 (287)
T ss_dssp             --------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTC-CEEEEEE--------CSSC--EEEEEECS-SE
T ss_pred             --------------cccceeeeeeccCCceEEEeecccceeeeccce-eeeeecc--------ccce--eeeeeccC-cc
Confidence                          123466788899988888887778889998844 4443321        2222  34567777 77


Q ss_pred             EEEEeCCC-eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCc
Q 011368          269 LAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  346 (487)
Q Consensus       269 l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~  346 (487)
                      +++++.++ .+++|++......    ..+.            ..|...+++++|+|++.+|++|+ +|.|++||+.. +.
T Consensus       133 ~~v~~~~~~~v~~~~~~~~~~~----~~~~------------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~  195 (287)
T d1pgua2         133 VAVGLEEGNTIQVFKLSDLEVS----FDLK------------TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-RE  195 (287)
T ss_dssp             EEEEETTTSCEEEEETTEEEEE----EECS------------SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TE
T ss_pred             eeeeccccceeeeeecccccee----eeee------------eccCCceeEEEeccCccccccccccccccceeecc-cc
Confidence            87777764 7999998765422    1111            12457899999999999999986 59999999986 44


Q ss_pred             e-eeeeecccccccccccccCCCCcceeeEEEEcC----------CCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCc
Q 011368          347 P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       347 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      . ...+..|...+               .+++|+|          ++.+|++|+.|+.|+|||++++......+.+|...
T Consensus       196 ~~~~~~~~h~~~v---------------~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~  260 (287)
T d1pgua2         196 VKTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG  260 (287)
T ss_dssp             EEECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred             ccccccccccccc---------------ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC
Confidence            3 33456666644               5788876          45689999999999999998877778888999999


Q ss_pred             cccceEeeCCccccccccceeeecccce-ecCC
Q 011368          416 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  447 (487)
Q Consensus       416 v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~  447 (487)
                      |.++.+++  +++      +++++.|+. ++|+
T Consensus       261 V~~v~~~~--~~~------l~s~g~D~~v~iW~  285 (287)
T d1pgua2         261 VNNLLWET--PST------LVSSGADACIKRWN  285 (287)
T ss_dssp             EEEEEEEE--TTE------EEEEETTSCEEEEE
T ss_pred             eEEEEECC--CCE------EEEEECCCeEEEEE
Confidence            99999997  333      688888988 9984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=226.78  Aligned_cols=268  Identities=10%  Similarity=0.038  Sum_probs=202.5

Q ss_pred             ceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccc
Q 011368           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (487)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      .+++++++||.            ++|++++|  ++    |++|+.||+|++||+.++.                      
T Consensus         3 ~~~i~~l~gH~------------~~I~~l~~--s~----l~sgs~Dg~v~~Wd~~~~~----------------------   42 (287)
T d1pgua2           3 DEVLKTISGHN------------KGITALTV--NP----LISGSYDGRIMEWSSSSMH----------------------   42 (287)
T ss_dssp             EEEEEEECCCS------------SCEEEEET--TT----TEEEETTSCEEETTTTEEE----------------------
T ss_pred             cceeEEECCCC------------CceEEEEE--Cc----EEEEeCCCeEEEEECCCCC----------------------
Confidence            46788999999            99999999  33    8999999999999987653                      


Q ss_pred             cccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCC
Q 011368          171 KNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                                    .+|...|.++++++++. ++++ .|++|++|++....             
T Consensus        43 ------------------------------~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~-------------   78 (287)
T d1pgua2          43 ------------------------------QDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE-------------   78 (287)
T ss_dssp             ------------------------------CCCCSCEEEEECCSTTC-CEEEETTTEEEETTEEEEE-------------
T ss_pred             ------------------------------CCCCCCEEEEEecCCCe-EEEEeeccccccccccccc-------------
Confidence                                          67899999999997654 5666 99999999986211             


Q ss_pred             CCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE
Q 011368          250 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  329 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  329 (487)
                        ....+.++.+++++ ..++ .+.++.+.+|+..+++..    ..+..              ..  ...++++++..++
T Consensus        79 --~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~----~~~~~--------------~~--~~~~~~~~~~~~~  134 (287)
T d1pgua2          79 --FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDII----KSVRL--------------NS--PGSAVSLSQNYVA  134 (287)
T ss_dssp             --CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCEE----EEEEC--------------SS--CEEEEEECSSEEE
T ss_pred             --cccceeeeeeccCC-ceEE-Eeecccceeeeccceeee----eeccc--------------cc--eeeeeeccCccee
Confidence              23446788899887 5554 456667889998887644    34333              12  2345677788887


Q ss_pred             EEe-C-CeEEEEeCCCCCceeeeeec-ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCcee
Q 011368          330 SRD-Y-MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  406 (487)
Q Consensus       330 s~~-d-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~  406 (487)
                      ++. + +.+++|++.. ......+.. +...               +++++|+|++.+|++|+.||.|++||+.++....
T Consensus       135 v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  198 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSD-LEVSFDLKTPLRAK---------------PSYISISPSETYIAAGDVMGKILLYDLQSREVKT  198 (287)
T ss_dssp             EEETTTSCEEEEETTE-EEEEEECSSCCSSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeccccceeeeeeccc-cceeeeeeeccCCc---------------eeEEEeccCccccccccccccccceeeccccccc
Confidence            764 4 6899999864 333333332 3332               2699999999999999999999999999886656


Q ss_pred             EEEeccCCccccceEeeCC--------ccccccccceeeecccce-ecCCC---CCccccccccCCCeEEEEEcCCCCEE
Q 011368          407 ITVEAGKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLI  474 (487)
Q Consensus       407 ~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~l~~g~~~~~-~~w~~---~~~~~~~~~~~~~v~~~~~spd~~~l  474 (487)
                      ..+.+|..++.+++++|..        ++.+     +++|+.|+. ++|+.   .+......+|...|++++|+|++.++
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~-----l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~  273 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV  273 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEE
T ss_pred             ccccccccccceeeecccccccccccCCCCe-----eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEE
Confidence            6678999999999998742        3344     899999999 99954   33444556899999999999987644


Q ss_pred             EEecCCeEEEEeC
Q 011368          475 ACANGNSLFFHYA  487 (487)
Q Consensus       475 a~~s~~~~~i~~~  487 (487)
                      .++.+..+++|+.
T Consensus       274 s~g~D~~v~iW~i  286 (287)
T d1pgua2         274 SSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEECCCeEEEEEE
Confidence            4444556999973

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3.2e-28  Score=225.63  Aligned_cols=309  Identities=12%  Similarity=0.060  Sum_probs=216.5

Q ss_pred             EEEEcC-CCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        37 ~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      .-.||| ||+++|+++ +|.|++||..+++.                            ..+ +|.            ..
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~----------------------------~~~-~~~------------~~   44 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV----------------------------LKV-PEP------------LR   44 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBE----------------------------EEC-SCC------------SC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcE----------------------------EEc-cCC------------CC
Confidence            467999 999999986 57999999877643                            222 577            88


Q ss_pred             eeEEEEEecCCCcEEEEEeCCC--cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          116 INRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      |.+++|  +|||++|++++.+.  .|++||..+++...+                                         
T Consensus        45 v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~-----------------------------------------   81 (360)
T d1k32a3          45 IRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-----------------------------------------   81 (360)
T ss_dssp             EEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEEC-----------------------------------------
T ss_pred             EEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEEe-----------------------------------------
Confidence            999999  68999998876553  799999998876543                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                             ..|...|.+++|+|++++|+++ .++.+++|++... ....+       +..|...+.+++|+|+| ++|+.+
T Consensus        82 -------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~spdg-~~la~~  145 (360)
T d1k32a3          82 -------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVI-------ERSREAMITDFTISDNS-RFIAYG  145 (360)
T ss_dssp             -------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEE-------EECSSSCCCCEEECTTS-CEEEEE
T ss_pred             -------eCCCceEEeeeecccccccceecccccccccccccc-ceeee-------eecccccccchhhccce-eeeeee
Confidence                   6889999999999999999999 9999999999844 44433       34577788899999999 888865


Q ss_pred             e----------CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeC
Q 011368          273 S----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI  341 (487)
Q Consensus       273 ~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~  341 (487)
                      .          .++.+++||+.+++..    ....              +...+..++|+|+|++|++++ ++.+++||.
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~----~~~~--------------~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKIF----AATT--------------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEEE----ECSC--------------SSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccccccceeeccccceeeeccccCcee----eecc--------------cccccccccccCCCCEEEEEeCCCceEcccc
Confidence            4          3456899999887532    2222              246788899999999999876 499999997


Q ss_pred             CCCCce-------eeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCc---EEEEEeCCCCceeEEEec
Q 011368          342 RMDSTP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       342 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~  411 (487)
                      .. ...       ...+..+....               ..+.|++++..++++..+..   .++|.+.........+..
T Consensus       208 ~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
T d1k32a3         208 VV-LNFSFEVVSKPFVIPLIPGSP---------------NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  271 (360)
T ss_dssp             SS-SCEECCSCBEEEEEESSTTCC---------------CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             cc-cceeeccccceEEEecccCcc---------------ccceECCCcCcccccceeecccccceeecccCcCceeEeee
Confidence            64 221       11122222211               24567777777766554321   234444322223344444


Q ss_pred             cCCccccceEeeC-Cccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEeC
Q 011368          412 GKNENRKPILQAA-PRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA  487 (487)
Q Consensus       412 ~~~~v~~~~~~~~-~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~~  487 (487)
                      +.+.+..+.+... ....+     +++++.++. .+|+....  ....+...|.+++|||||++|++++.|+ +++|.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~d~~~~--~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         272 LESSILIYSVPVHGEFAAY-----YQGAPEKGVLLKYDVKTR--KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             CSSEEEEEECCCCCSHHHH-----HHCCCCCEEEEEEETTTC--CEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             cCCCceEEEEEecCCCeeE-----EEecCCCCEEEEEECCCC--eEEEecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            5444443333332 12233     677888888 88955432  2335566799999999999999999655 999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-26  Score=205.82  Aligned_cols=263  Identities=15%  Similarity=0.209  Sum_probs=194.2

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..|+|++|    ++++|++|+.||+|+|||+.+++....                                         
T Consensus        16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~-----------------------------------------   50 (293)
T d1p22a2          16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI-----------------------------------------   50 (293)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred             CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence            78998765    688999999999999999998876554                                         


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  272 (487)
                            +.+|...|++++|  ++++|++| .|+.|++|++..+......        ..+..  ....+.+.. ..++++
T Consensus        51 ------l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~-~~~~~~  111 (293)
T d1p22a2          51 ------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL--------IHHCE--AVLHLRFNN-GMMVTC  111 (293)
T ss_dssp             ------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE--------CCCCS--CEEEEECCT-TEEEEE
T ss_pred             ------EecCCCCEeeeec--ccceeecccccccccccccccccccccc--------ccccc--ccccccccc-cceeec
Confidence                  3789999999987  57899999 9999999999955443322        11222  223344555 789999


Q ss_pred             eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eCCeEEEEeCCCCCceeeee
Q 011368          273 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       273 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~  351 (487)
                      ..++.+++||........ ....+             ..|...+..+.+.+  ..++++ .|+.|++||+++ .+.+..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~-~~~~~~~  174 (293)
T d1p22a2         112 SKDRSIAVWDMASPTDIT-LRRVL-------------VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTST-CEFVRTL  174 (293)
T ss_dssp             ETTSCEEEEECSSSSCCE-EEEEE-------------CCCSSCEEEEEEET--TEEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred             ccccceeEeecccccccc-ccccc-------------cccccccccceecc--cccccccCCCceeeecCCC-CcEEEEE
Confidence            999999999998765321 11112             23467787777765  455555 569999999987 7888888


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCcccccc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  431 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  431 (487)
                      .++...+               ..+.+  ++.++++++.||.|++||+.+. .......++...+....  +  +...  
T Consensus       175 ~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~--~--~~~~--  230 (293)
T d1p22a2         175 NGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR--F--DNKR--  230 (293)
T ss_dssp             ECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEE--C--CSSE--
T ss_pred             ccccccc---------------ccccC--CCCeEEEecCCCEEEEEecccc-eeeeeecccceeeeecc--c--cceE--
Confidence            8776643               24444  5679999999999999999987 44677777877665432  2  4445  


Q ss_pred             ccceeeecccce-ecCCCC-----------CccccccccCCCeEEEEEcCCCCEEEEecCCe-EEEEe
Q 011368          432 LSNLTRGLYRQA-HENSSS-----------GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  486 (487)
Q Consensus       432 ~~~l~~g~~~~~-~~w~~~-----------~~~~~~~~~~~~v~~~~~spd~~~la~~s~~~-~~i~~  486 (487)
                         |++|+.|+. ++|+..           .....+.+|.+.|++++|+  +++||+|+.|+ ++||.
T Consensus       231 ---l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 ---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ---EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ---EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence               899999999 999321           1233456799999999994  67899999765 99995

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-26  Score=213.83  Aligned_cols=288  Identities=13%  Similarity=0.129  Sum_probs=181.4

Q ss_pred             CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEe
Q 011368           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (487)
Q Consensus        44 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~  123 (487)
                      +.++++++.||.|++|++......                      ..........       +........+..++|.+
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~----------------------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  129 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDET----------------------KKVIFEKLDL-------LDSDMKKHSFWALKWGA  129 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTT----------------------CCEEEEEECC-------SCTTGGGSCEEEEEEEC
T ss_pred             CcEEEEEeCCCcEEEEEccCCCce----------------------eeeeccccce-------eeeccCCCceEEEEEec
Confidence            357889999999999998766432                      0000001110       01111125678888865


Q ss_pred             cC---CCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeec
Q 011368          124 AP---NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYP  200 (487)
Q Consensus       124 ~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (487)
                      ..   .+.++++++.|+++++|++................                            ......... ..
T Consensus       130 ~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~-~~  180 (393)
T d1sq9a_         130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP----------------------------TLELQGTVE-SP  180 (393)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC----------------------------EEEEEEEEC-CS
T ss_pred             CCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc----------------------------ceeccccee-cc
Confidence            32   25688999999999999986432111000000000                            000000001 12


Q ss_pred             ccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCC---
Q 011368          201 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---  276 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---  276 (487)
                      ..+...+.+++|+|++ +|++| .|++|++||+.+.. ....+.. ...+.+|...|++++|+|+| ++|++|+.|+   
T Consensus       181 ~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-~~~~~~~-~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~  256 (393)
T d1sq9a_         181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYNFES-QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFG  256 (393)
T ss_dssp             SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEEEEC-CC---CCCCCEEEEEECSST-TEEEEEEEETTEE
T ss_pred             cCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc-ccccccc-ccccccccceEEEccccccc-ceeeeecCCCCcc
Confidence            4566778999999997 88899 99999999999544 4333322 24567899999999999999 9999999886   


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceeeeeeccc
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE  355 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~  355 (487)
                      .|++||+++++..    ..+............+.+|...|++++|+|++++|++|+ |++|++||+++ ++++.++++|.
T Consensus       257 ~i~lwd~~~g~~~----~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~-g~~~~~l~gH~  331 (393)
T d1sq9a_         257 CITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHC  331 (393)
T ss_dssp             EEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCG
T ss_pred             eeeecccccceee----eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC-CCEEEEECCcC
Confidence            5999999998755    445442333344455678999999999999999999986 69999999997 89999999998


Q ss_pred             cccccccc--ccC----CCCcceeeEEEEcCCC----------CEEEEEcCCCcEEEEE
Q 011368          356 HLRPKLCD--LYN----NDSIFDKFECSVSGDG----------LHFATGSYSNLLRIFS  398 (487)
Q Consensus       356 ~~~~~~~~--~~~----~~~~~~~~~~~~s~d~----------~~l~sg~~dg~i~iwd  398 (487)
                      ..+.....  ...    ......++++.|.+.+          +.|++++.|+.|++|.
T Consensus       332 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         332 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            76542110  000    0001123455555432          3466666677777765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.8e-25  Score=203.52  Aligned_cols=274  Identities=16%  Similarity=0.227  Sum_probs=200.7

Q ss_pred             cceeEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeecccc
Q 011368           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (487)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                      .++....++||.            +.|.+ +++  ++|++|+||+.|++|+|||+.+++....                 
T Consensus         5 ~~~~~~~l~GH~------------~~V~s-~~~--~~g~~l~sgs~Dg~i~vWd~~~~~~~~~-----------------   52 (342)
T d2ovrb2           5 ELKSPKVLKGHD------------DHVIT-CLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------   52 (342)
T ss_dssp             CCCCCEEEECST------------TSCEE-EEE--EETTEEEEEETTSCEEEEETTTCCEEEE-----------------
T ss_pred             CCCcCEEECCcC------------CceEE-EEE--ECCCEEEEEeCCCeEEEEECCCCCEEEE-----------------
Confidence            445568899999            77754 242  3578999999999999999998876544                 


Q ss_pred             ccccccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC
Q 011368          170 EKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  248 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~  248 (487)
                                                    +.+|...|.+++|+|+  +|++| .|+.+++|+.........        
T Consensus        53 ------------------------------~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~--------   92 (342)
T d2ovrb2          53 ------------------------------LVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHT--------   92 (342)
T ss_dssp             ------------------------------CCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEE--------
T ss_pred             ------------------------------EeCCCCCEEEEEeCCC--ccccceecccccccccccccceec--------
Confidence                                          4789999999999864  88898 999999999984433222        


Q ss_pred             CCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEE
Q 011368          249 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  328 (487)
Q Consensus       249 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  328 (487)
                      ...+...+......+   ..++.+..|+.+.+|+..+++..    ..+..              .... .....+....+
T Consensus        93 ~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~----~~~~~--------------~~~~-~~~~~~~~~~~  150 (342)
T d2ovrb2          93 LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL----HVLMG--------------HVAA-VRCVQYDGRRV  150 (342)
T ss_dssp             ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE----EEEEC--------------CSSC-EEEEEECSSCE
T ss_pred             ccccceeEeeeeccc---ccccccccceeEEEeecccccce----eeeec--------------cccc-ceeecccccee
Confidence            223444555554443   57889999999999999987643    33332              1122 22333445556


Q ss_pred             EEE-eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeE
Q 011368          329 LSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  407 (487)
Q Consensus       329 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~  407 (487)
                      +++ .++.|++||... ...+..+.+|...                 ...+++++.+|++|+.||.|++||+.++ ....
T Consensus       151 ~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~  211 (342)
T d2ovrb2         151 VSGAYDFMVKVWDPET-ETCLHTLQGHTNR-----------------VYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIH  211 (342)
T ss_dssp             EEEETTSCEEEEEGGG-TEEEEEECCCSSC-----------------EEEEEECSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred             eeecCCCeEEEeeccc-ceeeEEEcCcccc-----------------cccccCCCCEEEEEeCCCeEEEeecccc-eeee
Confidence            655 569999999986 7888888877653                 5667778999999999999999999987 4578


Q ss_pred             EEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCC--cccc---ccccCCCeEEEEEcCCCCEEEEecCCe
Q 011368          408 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HHEL---SYNLSSKLLHLAWHPTTNLIACANGNS  481 (487)
Q Consensus       408 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~--~~~~---~~~~~~~v~~~~~spd~~~la~~s~~~  481 (487)
                      .+.+|...+..+.+.+    .+     +++|+.|+. ++|+...  ....   ...|...+..++++  ++++++|+.|+
T Consensus       212 ~~~~~~~~v~~~~~~~----~~-----l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg  280 (342)
T d2ovrb2         212 TLTGHQSLTSGMELKD----NI-----LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  280 (342)
T ss_dssp             EECCCCSCEEEEEEET----TE-----EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             EecccccceeEEecCC----CE-----EEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCC
Confidence            8899999888777754    34     899999999 9994432  2222   23456677777665  56899888665


Q ss_pred             -EEEEeC
Q 011368          482 -LFFHYA  487 (487)
Q Consensus       482 -~~i~~~  487 (487)
                       +++|+.
T Consensus       281 ~i~iwd~  287 (342)
T d2ovrb2         281 TVKLWDL  287 (342)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence             999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.1e-26  Score=206.57  Aligned_cols=290  Identities=8%  Similarity=-0.031  Sum_probs=196.2

Q ss_pred             eEeeecCCCcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccc
Q 011368           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (487)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      .+...++|+            +.|++|+|+  |++++|++|+.|++|+|||+..+......                   
T Consensus         3 ~v~~~~~h~------------d~I~~l~fs--p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~-------------------   49 (342)
T d1yfqa_           3 IVQIEQAPK------------DYISDIKII--PSKSLLLITSWDGSLTVYKFDIQAKNVDL-------------------   49 (342)
T ss_dssp             EEECSSCCS------------SCEEEEEEE--GGGTEEEEEETTSEEEEEEEETTTTEEEE-------------------
T ss_pred             eEEcCCCCC------------CCEEEEEEe--CCCCEEEEEECCCeEEEEEccCCCcceEE-------------------
Confidence            456678898            899999995  68899999999999999999875432210                   


Q ss_pred             cccccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCC-CCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCC
Q 011368          173 FMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  250 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  250 (487)
                                              .. ..+|...|.+++|+|+ +.+|++| .|+.|++|++.........       ..
T Consensus        50 ------------------------~~-~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~-------~~   97 (342)
T d1yfqa_          50 ------------------------LQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL-------TN   97 (342)
T ss_dssp             ------------------------EE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC-------BS
T ss_pred             ------------------------EE-ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc-------cc
Confidence                                    00 1479999999999986 4578888 9999999999855443321       12


Q ss_pred             CCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          251 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       251 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      .+........+.++. ..+++++.++.+++||++..............+           ..........+.+++..+++
T Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          98 NEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-----------NTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             CCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-----------SSSSCCCEEEEEECSSEEEE
T ss_pred             ccccccccccccccc-ccccccccccccceeeccccccceeeecccccc-----------cccceeeeeeeeccCCceee
Confidence            233344555566666 899999999999999998755332111111111           01233456667778888888


Q ss_pred             Ee-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEE-cCCCCEEEEEcCCCcEEEEEeCCCCce---
Q 011368          331 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVGSAG---  405 (487)
Q Consensus       331 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~sg~~dg~i~iwd~~~~~~~---  405 (487)
                      ++ |+.|++||+.. ...............         .   .....+ +.++..+++++.||.+.+|+.......   
T Consensus       166 ~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         166 GMNNSQVQWFRLPL-CEDDNGTIEESGLKY---------Q---IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EESTTEEEEEESSC-CTTCCCEEEECSCSS---------C---EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             ecCCCcEEEEeccc-Ccccceeeeeccccc---------c---eeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence            75 69999999986 333222221111100         0   124444 457889999999999999998754221   


Q ss_pred             --eE---------EEeccCCccccceEeeCCccccccccceeeecccce-ecCCCC--CccccccccCCCeEEEEEcCCC
Q 011368          406 --GI---------TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTT  471 (487)
Q Consensus       406 --~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~--~~~~~~~~~~~~v~~~~~spd~  471 (487)
                        ..         ....|...+++++|+|  ++.+     |++|+.|+. ++|+..  +.+..+ .....+..++|+|++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~-----lasg~~Dg~v~vWD~~~~~~l~~~-~~~~~~~~~~~s~~~  304 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNF-AKFNEDSVVKIACSD  304 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEEC-CCCSSSEEEEEEECS
T ss_pred             cccceeeeeeeccCCCcccccceeEEecC--CccE-----EEEECCCCEEEEEECCCCcEEEEe-cCCCCCEEEEEEeCC
Confidence              11         1234566778899998  5666     999999999 999543  233333 233455678899999


Q ss_pred             CEEEEecCC
Q 011368          472 NLIACANGN  480 (487)
Q Consensus       472 ~~la~~s~~  480 (487)
                      +.||+|+.|
T Consensus       305 ~~l~~a~sd  313 (342)
T d1yfqa_         305 NILCLATSD  313 (342)
T ss_dssp             SEEEEEEEC
T ss_pred             CEEEEEEcC
Confidence            999987744

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6.7e-26  Score=209.78  Aligned_cols=269  Identities=12%  Similarity=0.041  Sum_probs=187.4

Q ss_pred             CccccccCcEEEEEEcCCCCEEEEEecCC--cEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcc
Q 011368           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (487)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (487)
                      ...+.|...|.+++|+|||++|++++.+.  .|++||.++++.                            ..+..|.  
T Consensus        36 ~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~----------------------------~~~~~~~--   85 (360)
T d1k32a3          36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA----------------------------EKFEENL--   85 (360)
T ss_dssp             EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE----------------------------EECCCCC--
T ss_pred             EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE----------------------------EEeeCCC--
Confidence            34567999999999999999998876553  799999987753                            4567787  


Q ss_pred             cccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       104 ~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                                ..|.+++|  +|++++|++++.++.+++|++.+++....                               
T Consensus        86 ----------~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------  122 (360)
T d1k32a3          86 ----------GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVI-------------------------------  122 (360)
T ss_dssp             ----------CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------------------
T ss_pred             ----------ceEEeeee--cccccccceeccccccccccccccceeee-------------------------------
Confidence                      88999999  68999999999999999999998875544                               


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-----------cCCeEEEEEccCCCceeEEeecCCCCCCCC
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPSNMDDL  252 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  252 (487)
                                      +..|...+.+++|+|+|++|+.+           .++.+++|++.. ++...        +..+
T Consensus       123 ----------------~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~--------~~~~  177 (360)
T d1k32a3         123 ----------------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RKIFA--------ATTE  177 (360)
T ss_dssp             ----------------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TEEEE--------CSCS
T ss_pred             ----------------eecccccccchhhccceeeeeeeccccccceeeccccceeeecccc-Cceee--------eccc
Confidence                            25778889999999999999864           245689999984 33332        3456


Q ss_pred             CCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccc---eeecccccccCcc-----------------------
Q 011368          253 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA---RILRDAAESHGSK-----------------------  306 (487)
Q Consensus       253 ~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~h~~~~~~~-----------------------  306 (487)
                      ...+..++|+|+| +.|++++.++.+++||...........   .....|.......                       
T Consensus       178 ~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  256 (360)
T d1k32a3         178 NSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS  256 (360)
T ss_dssp             SSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred             ccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccce
Confidence            6778999999999 999999999999999976543221100   1111111100000                       


Q ss_pred             ccccccccceeEEEEcCCCC-------------EEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcce
Q 011368          307 SFFTEIIASISDIKFANDGQ-------------HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  372 (487)
Q Consensus       307 ~~~~~~~~~v~~v~~s~~~~-------------~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (487)
                      ..+....+....+...+++.             ++++++ ++.|++||+.+ ++ ...+..+   +              
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~~---v--------------  317 (360)
T d1k32a3         257 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RK-VTEVKNN---L--------------  317 (360)
T ss_dssp             EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CC-EEEEEEE---E--------------
T ss_pred             eecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-Ce-EEEecCC---c--------------
Confidence            00001112223333333322             233343 48899999976 43 2222222   2              


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCC
Q 011368          373 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  414 (487)
Q Consensus       373 ~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  414 (487)
                       .+++|||||++|++++.||.|++||+++++. ..++..+..
T Consensus       318 -~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~-~~~~~~d~~  357 (360)
T d1k32a3         318 -TDLRLSADRKTVMVRKDDGKIYTFPLEKPED-ERTVETDKR  357 (360)
T ss_dssp             -EEEEECTTSCEEEEEETTSCEEEEESSCTTS-CEECCCCSS
T ss_pred             -CEEEECCCCCEEEEEECCCeEEEEECCCCCc-ceEEEeccc
Confidence             5899999999999999999999999998854 444444443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.2e-24  Score=205.86  Aligned_cols=329  Identities=8%  Similarity=-0.008  Sum_probs=220.1

Q ss_pred             cCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEE
Q 011368           41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  120 (487)
Q Consensus        41 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~  120 (487)
                      ++++-++++.+.||+|.|||.++++.                           +..+..|             ..+..++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v---------------------------~~~~~~g-------------~~~~~v~   68 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTG-------------YAVHISR   68 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECS-------------SCEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcE---------------------------EEEEeCC-------------CCeeEEE
Confidence            44444568889999999999988765                           4666655             3489999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeec
Q 011368          121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYP  200 (487)
Q Consensus       121 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (487)
                      |  +|||+++++++.|+.|++||+.+++........                                         . .
T Consensus        69 f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~-----------------------------------------~-~  104 (432)
T d1qksa2          69 L--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-----------------------------------------I-G  104 (432)
T ss_dssp             E--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-----------------------------------------C-C
T ss_pred             E--CCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe-----------------------------------------c-C
Confidence            9  789999999999999999999887643321110                                         0 1


Q ss_pred             ccCCCceeEEEeCCCCCEE-EEe-cCCeEEEEEccCCCceeEEeecCC----CCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          201 HAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                      .+|.+.+.+..|+|||++| +++ .++.|++||..+. .....+....    .....+......+.++|++..++++...
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            3455667777889999987 556 8999999999954 4444432110    0112345667889999999444566677


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCceeeeee
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~~~~~~~  352 (487)
                      ++.|.+||..+.+..    +....            .+...+..++|+|+|+++++++ + +.+.++|..+ .+.+..+.
T Consensus       184 ~~~i~~~d~~~~~~~----~~~~i------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~-~~~~~~~~  246 (432)
T d1qksa2         184 TGKILLVDYTDLNNL----KTTEI------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIED  246 (432)
T ss_dssp             TTEEEEEETTCSSEE----EEEEE------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEE
T ss_pred             CCeEEEEEccCCCcc----eEEEE------------cccCccccceECCCCCEEEEeccccceEEEeeccc-ceEEEEec
Confidence            899999998876532    22221            0134678999999999988774 3 8999999875 54443332


Q ss_pred             ccccc-----c-----------ccccc-------------ccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          353 IHEHL-----R-----------PKLCD-------------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       353 ~~~~~-----~-----------~~~~~-------------~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      .....     .           .....             ....+....+....++|++..+++++.++..++|...+..
T Consensus       247 ~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~  326 (432)
T d1qksa2         247 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN  326 (432)
T ss_dssp             CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred             cCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC
Confidence            11100     0           00000             0001111234567788888888888888888999876542


Q ss_pred             ceeEEEeccCCccccceEeeCCccccccccceeeecccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEec----
Q 011368          404 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN----  478 (487)
Q Consensus       404 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s----  478 (487)
                             .|......+++ |  +++.     +++++.|+. ++|...+. ..+.++.+.|.+++|||||++|+++.    
T Consensus       327 -------~~~~~~~sv~v-p--Dg~~-----la~~s~d~~~k~w~~~~~-~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~  390 (432)
T d1qksa2         327 -------PEAEISGSVAV-F--DIKA-----MTGDGSDPEFKTLPIAEW-AGITEGQPRVVQGEFNKDGTEVWFSVWNGK  390 (432)
T ss_dssp             -------SSHHHHTCEEE-E--EGGG-----CCCSSSCCCEEEECHHHH-HTCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred             -------CCCCeeeEEEE-E--echh-----hcccccCCceEecccccc-cccCCCCCcEEEeEECCCCCEEEEEEecCC
Confidence                   23333334443 5  6676     999999999 99965322 23446778899999999999886553    


Q ss_pred             --CCeEEEEeC
Q 011368          479 --GNSLFFHYA  487 (487)
Q Consensus       479 --~~~~~i~~~  487 (487)
                        ++.+.||.+
T Consensus       391 ~~~g~i~i~D~  401 (432)
T d1qksa2         391 DQESALVVVDD  401 (432)
T ss_dssp             TSCCEEEEEET
T ss_pred             CCCCcEEEEEC
Confidence              234888864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=6.3e-24  Score=201.28  Aligned_cols=325  Identities=8%  Similarity=-0.007  Sum_probs=213.6

Q ss_pred             EcCCC--CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccccee
Q 011368           40 FDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (487)
Q Consensus        40 ~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~  117 (487)
                      ++.|.  -++++.+.||+|+|||+.+++.                           +.++..|.             .+.
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~---------------------------~~~l~~g~-------------~~~   65 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY-------------AVH   65 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSE---------------------------EEEEECCS-------------SEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcE---------------------------EEEEeCCC-------------Cee
Confidence            44443  3567788999999999988764                           46677664             489


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceee
Q 011368          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (487)
                      .++|  +|||+++++++.|++|++||+.+++........                                         
T Consensus        66 ~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~-----------------------------------------  102 (426)
T d1hzua2          66 ISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-----------------------------------------  102 (426)
T ss_dssp             EEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-----------------------------------------
T ss_pred             EEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe-----------------------------------------
Confidence            9999  689999999999999999999988754432111                                         


Q ss_pred             eecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCC----CCCCCCCcEEEEEEecCCCCEEEE
Q 011368          198 VYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       198 ~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                      . ..+|...+.+++|+|||++++++  .++.+.+||..+. .....+.....    ....+......+.+++++ ..++.
T Consensus       103 ~-~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~-~~~~~  179 (426)
T d1hzua2         103 I-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH-PEFIV  179 (426)
T ss_dssp             C-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSS-SEEEE
T ss_pred             C-CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEEEECCCC-CEEEE
Confidence            0 14566777888899999987664  8999999999954 44443311100    111233445666777777 44444


Q ss_pred             Ee-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCcee
Q 011368          272 SS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       272 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~  348 (487)
                      .. ..+.+.+++........   ..             ..++...+..+.|+|++++++++.  +..+.+++... ++.+
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~-~~~~  242 (426)
T d1hzua2         180 NVKETGKVLLVNYKDIDNLT---VT-------------SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLS  242 (426)
T ss_dssp             EETTTTEEEEEECSSSSSCE---EE-------------EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT-TEEE
T ss_pred             ecCCCCeEEEEEecccccee---eE-------------EeccCCccEeeeECCCCcEEEeeeecccceeeeeccc-ccEE
Confidence            33 34566666655543210   01             112356789999999999998874  38899999986 7776


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEcCCCC--E-EEEEcCCCcEEEEEeCCCC------ceeEEEeccCCccccc
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--H-FATGSYSNLLRIFSHGVGS------AGGITVEAGKNENRKP  419 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~--~-l~sg~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~  419 (487)
                      ............             ....+..++.  . .++.+.|+.+.+|+.....      .....+.+|...+..+
T Consensus       243 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v  309 (426)
T d1hzua2         243 ALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  309 (426)
T ss_dssp             EEEECSSCCCCS-------------CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE
T ss_pred             EEeccCCccccc-------------ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE
Confidence            666544332211             1233332222  2 2234567788888776532      4577899999999999


Q ss_pred             eEeeCCcccccccccee-------eecccce-ecCCCC--Ccccc---------ccccCCCeEEEEEcCCCCEEEEec--
Q 011368          420 ILQAAPRARRSSLSNLT-------RGLYRQA-HENSSS--GHHEL---------SYNLSSKLLHLAWHPTTNLIACAN--  478 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~-------~g~~~~~-~~w~~~--~~~~~---------~~~~~~~v~~~~~spd~~~la~~s--  478 (487)
                      +++|  +++.     |+       +|..++. ++|+..  +....         ...+...|.+++|||||++|++++  
T Consensus       310 ~~sP--dg~~-----l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         310 KTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             ECCT--TCSE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred             EcCC--CCce-----EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence            9999  6666     66       4666777 999543  22221         235667899999999999775432  


Q ss_pred             ----CCeEEEEeC
Q 011368          479 ----GNSLFFHYA  487 (487)
Q Consensus       479 ----~~~~~i~~~  487 (487)
                          ++.+.||.+
T Consensus       383 ~~~~~~~i~v~D~  395 (426)
T d1hzua2         383 GKNDSSALVVVDD  395 (426)
T ss_dssp             CTTSCCEEEEEET
T ss_pred             CCCCCCeEEEEEC
Confidence                233888864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=8.2e-22  Score=186.55  Aligned_cols=322  Identities=10%  Similarity=-0.022  Sum_probs=188.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      +.+...+..++|||||++|++++.|++|++||+.+++..                      ....+....+|.       
T Consensus        58 l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~----------------------~~~~i~~~~~~~-------  108 (426)
T d1hzua2          58 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----------------------KVAEIKIGIEAR-------  108 (426)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------------------EEEEEECCSEEE-------
T ss_pred             EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee----------------------EEEEEeCCCCCc-------
Confidence            334457999999999999999999999999999988642                      111122223343       


Q ss_pred             ccccccceeEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCC----------Cceeeeecccccccccccc
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHF----------PFVSSENTLLAEKNFMNEH  177 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  177 (487)
                           ..+.+++|  +|||++++++ ..++.+++||..++...........          .....+ ..++++..+...
T Consensus       109 -----~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~s~d~~~~~~~  180 (426)
T d1hzua2         109 -----SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI-IASHEHPEFIVN  180 (426)
T ss_dssp             -----EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE-EECSSSSEEEEE
T ss_pred             -----ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEE-EECCCCCEEEEe
Confidence                 45566666  6899987554 5899999999998877655432111          111111 112222222221


Q ss_pred             CCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCc
Q 011368          178 NPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  255 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  255 (487)
                      .......... ..............+...+..+.++|++++++++  .+..+.+++.. ...........     .+...
T Consensus       181 ~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~  253 (426)
T d1hzua2         181 VKETGKVLLV-NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG-----KTPHP  253 (426)
T ss_dssp             ETTTTEEEEE-ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT-TTEEEEEEECS-----SCCCC
T ss_pred             cCCCCeEEEE-EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc-cccEEEEeccC-----Ccccc
Confidence            1111111111 0111111111124677888999999999998886  77889999998 44444443221     22222


Q ss_pred             EEEEEEecCCCCEEE--EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE---
Q 011368          256 ITSAEFHPIYCNLLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS---  330 (487)
Q Consensus       256 v~~v~~~p~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s---  330 (487)
                      .....+...+.....  ..+.|+.+.+|+..........   +       .....+.+|...+..++|+||+++|++   
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~---~-------~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~  323 (426)
T d1hzua2         254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA---W-------KKVAELQGQGGGSLFIKTHPKSSHLYVDTT  323 (426)
T ss_dssp             SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB---T-------SEEEEEECSSSCCCCEECCTTCSEEEECCT
T ss_pred             cceeeeecCCCCceEEeccCCCceEEEeecccccccccc---c-------eEeEEEecCCCceeEEEcCCCCceEEEeec
Confidence            233444433312222  3345788888887764321110   0       011224456788999999999999995   


Q ss_pred             ----Ee-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-----cCCCcEEEEEeC
Q 011368          331 ----RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-----SYSNLLRIFSHG  400 (487)
Q Consensus       331 ----~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-----~~dg~i~iwd~~  400 (487)
                          +. +++|+|||+.+ ++....+..+.....      ..+....+..++|||||++|+..     +.+|.|+|||.+
T Consensus       324 ~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~------~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         324 FNPDARISQSVAVFDLKN-LDAKYQVLPIAEWAD------LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             TCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHC------CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             CCCCcccCCEEEEEECCC-CCcCeEEeccchhcc------cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence                22 48999999987 555444432211000      00011123589999999977432     467899999999


Q ss_pred             CCCceeEEEecc
Q 011368          401 VGSAGGITVEAG  412 (487)
Q Consensus       401 ~~~~~~~~~~~~  412 (487)
                      +++ ....+.++
T Consensus       397 T~k-~~~~i~~~  407 (426)
T d1hzua2         397 TLK-LKAVVKDP  407 (426)
T ss_dssp             TTE-EEEEECCT
T ss_pred             CCe-EEEEECCC
Confidence            984 45556555

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.8e-20  Score=168.17  Aligned_cols=245  Identities=11%  Similarity=0.086  Sum_probs=179.9

Q ss_pred             cccCcEEEEEEcCCCCEEE-EEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccc
Q 011368           30 QDVDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (487)
                      .....+..++|+|||++|+ +++.++.|++||+.+++.                           +..+..|.       
T Consensus        29 ~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~---------------------------~~~~~~~~-------   74 (301)
T d1l0qa2          29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAGS-------   74 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECSS-------
T ss_pred             ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce---------------------------eeeeeccc-------
Confidence            3345688999999999874 666889999999887754                           35555553       


Q ss_pred             ccccccceeEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          109 SLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       109 ~~~~~~~I~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            .+..++|  ++++..++ ++..++.+.+|+..+++....                                   
T Consensus        75 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  111 (301)
T d1l0qa2          75 ------SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT-----------------------------------  111 (301)
T ss_dssp             ------SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE-----------------------------------
T ss_pred             ------ccccccc--ccccccccccccccceeeecccccceeeee-----------------------------------
Confidence                  4688889  56777555 456788999999988865543                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  265 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  265 (487)
                                   ..+.....++.++|+++.++.+  .++.+.+|+..+.. ....+        .+...+.++.++|++
T Consensus       112 -------------~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~  169 (301)
T d1l0qa2         112 -------------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTV--------SVGRSPKGIAVTPDG  169 (301)
T ss_dssp             -------------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE--------ECCSSEEEEEECTTS
T ss_pred             -------------ccccccceEEEeecCCCeeeeeeccccceeeeeccccc-eeeec--------ccCCCceEEEeeccc
Confidence                         2345567889999999988664  78899999998543 33322        233457899999998


Q ss_pred             CCEEEEEeC-CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC---CeEEEEe
Q 011368          266 CNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---MNLKLWD  340 (487)
Q Consensus       266 ~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d---~~i~iwd  340 (487)
                       ..+++++. ++.+.+|+....+..    .....              ...+..+++++++..++.+ .+   +.|++||
T Consensus       170 -~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         170 -TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             -SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             -cceeeecccccccccccccceeee----ecccc--------------cCCcceeeccccccccccccccceeeeeeeee
Confidence             77776665 467778877765433    33333              3467889999999988754 22   7899999


Q ss_pred             CCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEE-EEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          341 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      +.+ ++.+..+..+..+                ..++|+|||++| ++++.|+.|++||+++++ ...++.
T Consensus       231 ~~t-~~~~~~~~~~~~~----------------~~va~spdg~~l~va~~~~~~i~v~D~~t~~-~~~~~~  283 (301)
T d1l0qa2         231 TGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFCNTVSVIDTATNT-ITATMA  283 (301)
T ss_dssp             TTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE
T ss_pred             cCC-CeEEEEEcCCCCE----------------EEEEEeCCCCEEEEEECCCCeEEEEECCCCe-EEEEEe
Confidence            987 7777777655443                589999999987 577889999999999984 345554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.1e-20  Score=167.78  Aligned_cols=222  Identities=11%  Similarity=0.129  Sum_probs=161.9

Q ss_pred             EEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecCCC
Q 011368           48 AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  127 (487)
Q Consensus        48 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~  127 (487)
                      ++++.|++|.|||+++++.                           +.++...             ..+..++|  +|+|
T Consensus         6 V~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g-------------~~p~~va~--spdG   43 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV---------------------------TATIPVG-------------SNPMGAVI--SPDG   43 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE---------------------------EEEEECS-------------SSEEEEEE--CTTS
T ss_pred             EEECCCCEEEEEECCCCeE---------------------------EEEEECC-------------CCceEEEE--eCCC
Confidence            4567899999999987754                           3444432             44788999  6899


Q ss_pred             cEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCc
Q 011368          128 SMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFN  206 (487)
Q Consensus       128 ~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (487)
                      ++|+ +++.++.|++||+.+++.....                                               ..+ ..
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~~~~~~~-----------------------------------------------~~~-~~   75 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATNNVIATV-----------------------------------------------PAG-SS   75 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEE-----------------------------------------------ECS-SS
T ss_pred             CEEEEEECCCCEEEEEECCCCceeeee-----------------------------------------------ecc-cc
Confidence            8874 5668899999999988765431                                               222 34


Q ss_pred             eeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011368          207 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  284 (487)
Q Consensus       207 v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~  284 (487)
                      +..++++++++.+++ + .++.+.+|+... ......+        .+...+.++.|+|++..+++++..++.+.+|+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~  146 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTV--------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEE--------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccccccccccccccccccccceeeeccccc-ceeeeec--------cccccceEEEeecCCCeeeeeeccccceeeeecc
Confidence            688999999987766 4 888999999984 4444332        2345578899999993344556668899999999


Q ss_pred             CCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCceeeeeecccccccccc
Q 011368          285 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  362 (487)
Q Consensus       285 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  362 (487)
                      +....    ..+..              ...+..+.++|++.+++++. + +.+.+|+... ......+..+..+     
T Consensus       147 ~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----  202 (301)
T d1l0qa2         147 TKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKVEAAP-----  202 (301)
T ss_dssp             TTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSEE-----
T ss_pred             cccee----eeccc--------------CCCceEEEeeccccceeeecccccccccccccc-eeeeecccccCCc-----
Confidence            87644    34443              34678899999999888764 4 7888888875 6666666555443     


Q ss_pred             cccCCCCcceeeEEEEcCCCCEEEEEc---CCCcEEEEEeCCCC
Q 011368          363 DLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGS  403 (487)
Q Consensus       363 ~~~~~~~~~~~~~~~~s~d~~~l~sg~---~dg~i~iwd~~~~~  403 (487)
                                 ..+++++++..++.++   .++.|++||+.+++
T Consensus       203 -----------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         203 -----------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             -----------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             -----------ceeeccccccccccccccceeeeeeeeecCCCe
Confidence                       4899999999887654   34689999998873

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=2.7e-20  Score=170.46  Aligned_cols=262  Identities=9%  Similarity=0.031  Sum_probs=172.3

Q ss_pred             EEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeec-CCCcccccccccccccce
Q 011368           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        38 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~I  116 (487)
                      ++|+++++||++++.+++|.|||+.+++.                           +.+++ .|.            ..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~---------------------------~~t~~~~~~------------~~p   42 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPDK------------FGP   42 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSSC------------CSS
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE---------------------------EEEEEcCCC------------CCc
Confidence            57999999999999999999999987754                           45554 334            567


Q ss_pred             eEEEEEecCCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      .+++|  +|||++++ ++..++.|.+||+.+++...........                                    
T Consensus        43 ~~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~------------------------------------   84 (346)
T d1jmxb_          43 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------   84 (346)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred             ceEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc------------------------------------
Confidence            89999  68998875 4568899999999998766543221111                                    


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEEe-c------------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                           ..+...+..++|+|||++++++ .            +..+.+|+..++..... +     ........+..+.++
T Consensus        85 -----~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          85 -----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-V-----RTFPMPRQVYLMRAA  153 (346)
T ss_dssp             -----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-S-----EEEECCSSCCCEEEC
T ss_pred             -----cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeE-E-----EeeeccCceEEEEec
Confidence                 2223346678899999988765 3            56677777764332110 0     001112234445566


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCccccccceeeccccc-----------------------------------------
Q 011368          263 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-----------------------------------------  301 (487)
Q Consensus       263 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-----------------------------------------  301 (487)
                      +++ .++++ +  +.+.+|++.+++..    ..+..+..                                         
T Consensus       154 ~~~-~~~~~-~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (346)
T d1jmxb_         154 DDG-SLYVA-G--PDIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  225 (346)
T ss_dssp             TTS-CEEEE-S--SSEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             CCC-EEEEe-C--CcceEEEccCCCEE----EEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEee
Confidence            665 44443 2  34677777665432    11111000                                         


Q ss_pred             --------------ccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCC
Q 011368          302 --------------SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  367 (487)
Q Consensus       302 --------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (487)
                                    .......+..|...+..+.+++++.+++...++.|++||..+ ++.+..+......          
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~----------  294 (346)
T d1jmxb_         226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHTY----------  294 (346)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSCC----------
T ss_pred             ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCCE----------
Confidence                          000001123455677788889998888887778999999987 7777766643322          


Q ss_pred             CCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccC
Q 011368          368 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  413 (487)
Q Consensus       368 ~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  413 (487)
                            ++++|||||++|++++.|+.|++||+++++ .+.+++.+.
T Consensus       295 ------~~va~s~DG~~l~v~~~d~~v~v~D~~t~~-~i~~i~~p~  333 (346)
T d1jmxb_         295 ------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLE-KVKNIKLPG  333 (346)
T ss_dssp             ------CEEEECSSSSCEEEESBSSEEEEEETTTTE-EEEEEECSS
T ss_pred             ------EEEEEcCCCCEEEEEeCCCcEEEEECccCC-EEEEEECCC
Confidence                  489999999999999999999999999884 455555443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1e-19  Score=165.86  Aligned_cols=250  Identities=11%  Similarity=0.060  Sum_probs=171.4

Q ss_pred             CEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEec
Q 011368           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (487)
Q Consensus        45 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~  124 (487)
                      +||++++.|++|.|||+.+++.                           +.++..+...          ..+.+++|  +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~---------------------------~~~i~~~~~~----------~~~~~i~~--s   42 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADAG----------PTPMVPMV--A   42 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTCT----------TCCCCEEE--C
T ss_pred             eEEEEEcCCCEEEEEECCCCeE---------------------------EEEEECCCCC----------CCccEEEE--C
Confidence            5899999999999999987754                           4555443210          45788999  6


Q ss_pred             CCCcEEE-EEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          125 PNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       125 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      |||++++ +++.++.|.+||+.+++.........                                          ...+
T Consensus        43 pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~------------------------------------------~~~~   80 (337)
T d1pbyb_          43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------------------------------------PEER   80 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------------------------------------TTEE
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC------------------------------------------Cccc
Confidence            8998874 56789999999999988765432111                                          0122


Q ss_pred             CCceeEEEeCCCCCEEEEe-c------------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          204 DFNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                      ...+..++|+|+++.++++ .            +..+.+||..+. .....+        .+...+.+++|+|+| ++++
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~--------~~~~~~~~~~~s~dg-~~l~  150 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAF--------EAPRQITMLAWARDG-SKLY  150 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEE--------ECCSSCCCEEECTTS-SCEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC-eEEEec--------cccCCceEEEEcCCC-CEEE
Confidence            3446689999999999886 4            467788888843 333332        133456789999999 8888


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccc------cC----------------------------------------
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAES------HG----------------------------------------  304 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~------~~----------------------------------------  304 (487)
                      +++.+  +.+||..+++..    ..+..+...      +.                                        
T Consensus       151 ~~~~~--~~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         151 GLGRD--LHVMDPEAGTLV----EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             EESSS--EEEEETTTTEEE----EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             EEcCC--cceeeeecCcEE----EEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence            88654  678998876532    111110000      00                                        


Q ss_pred             -------ccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEE
Q 011368          305 -------SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  377 (487)
Q Consensus       305 -------~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (487)
                             ....+..+...+..+.++|++.++++++ +.|++||+.+ ++.+..+......                .+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~~----------------~~~~  286 (337)
T d1pbyb_         225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEK-NASIKRVPLPHSY----------------YSVN  286 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTT-TEEEEEEECSSCC----------------CEEE
T ss_pred             EcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEECCC-CcEEEEEcCCCCE----------------EEEE
Confidence                   0001123445566777888888876654 8999999997 7777777644332                4899


Q ss_pred             EcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          378 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       378 ~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      |+|||++|++++.|+.|+|||.++++. ...++
T Consensus       287 ~s~dG~~l~v~~~~~~i~v~D~~t~~~-v~~i~  318 (337)
T d1pbyb_         287 VSTDGSTVWLGGALGDLAAYDAETLEK-KGQVD  318 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTCCE-EEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCcE-EEEEE
Confidence            999999999999999999999998854 44443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=1.2e-19  Score=166.12  Aligned_cols=290  Identities=10%  Similarity=0.026  Sum_probs=185.4

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      ++++++|++++.|++|.+||+.+++......                                              ..+
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~----------------------------------------------~~~   38 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----------------------------------------------MPD   38 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------CSS
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEE----------------------------------------------cCC
Confidence            6889999999999999999999998665421                                              245


Q ss_pred             CCceeEEEeCCCCCEEEE-e-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe--------
Q 011368          204 DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--------  273 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--------  273 (487)
                      ...+.+++|+|||+++++ + .++.|++||+.+. +....+... .....+...+..++|+|+| +++++++        
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~~-~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLS-SVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLND  115 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESC-CSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSS
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeeccc-ccccccCCceEEEEEecCC-CEEEEEecCCcceee
Confidence            566789999999998754 5 8899999999954 444333211 1111222345678999999 8787765        


Q ss_pred             ----CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceee
Q 011368          274 ----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       274 ----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~  349 (487)
                          .++.+.+||..+++..    ..+..+.           ....+..+.+++++.+++++  +.+.+|++.+ +..+.
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~  177 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEA----KPVRTFP-----------MPRQVYLMRAADDGSLYVAG--PDIYKMDVKT-GKYTV  177 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGB----CCSEEEE-----------CCSSCCCEEECTTSCEEEES--SSEEEECTTT-CCEEE
T ss_pred             eeccCcceEEEEecccceee----eEEEeee-----------ccCceEEEEecCCCEEEEeC--CcceEEEccC-CCEEE
Confidence                4678889998887643    2222210           02345667778888766654  4688999986 77777


Q ss_pred             eeecccccccccccc--------cCCCCccee--eEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccc
Q 011368          350 TFKIHEHLRPKLCDL--------YNNDSIFDK--FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP  419 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  419 (487)
                      .+..+..........        ........+  ....+.+....++++..++.+.+|++.++......+..+...+...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (346)
T d1jmxb_         178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG  257 (346)
T ss_dssp             EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             EEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEE
Confidence            766554322111100        000000000  1122223444556666777899999999877777778888888888


Q ss_pred             eEeeCCccccccccceeeecccceecCCCCC-ccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEeC
Q 011368          420 ILQAAPRARRSSLSNLTRGLYRQAHENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  487 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~l~~g~~~~~~~w~~~~-~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~~  487 (487)
                      .+++  ++..     ++....+...+|+... .......+...+.+++|+|||++|++++ ++.+.+|++
T Consensus       258 ~~~~--~~~~-----~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         258 LRSP--KDPN-----QIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             EECS--SCTT-----EEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             EEeC--CCCE-----EEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            8777  3343     5555554447884322 2223344556789999999999999988 555999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3e-19  Score=162.81  Aligned_cols=282  Identities=11%  Similarity=0.025  Sum_probs=183.9

Q ss_pred             cEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCce
Q 011368          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNI  207 (487)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (487)
                      +++++++.|++|++||+.+++......                                             ...+...+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~---------------------------------------------~~~~~~~~   36 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVIT---------------------------------------------IADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE---------------------------------------------CTTCTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEE---------------------------------------------CCCCCCCc
Confidence            589999999999999999987665421                                             13445567


Q ss_pred             eEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-----------
Q 011368          208 NSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----------  274 (487)
Q Consensus       208 ~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----------  274 (487)
                      .+++|+|||++++ ++ .++.|.+||+.+++ ....+...  ....+...+..++|+|++ +.++++..           
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-~~~~~~~~--~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLS--TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECC--BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEE
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecC--CCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccc
Confidence            8999999999874 56 89999999999544 44433221  111222345578999999 88877753           


Q ss_pred             -CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeec
Q 011368          275 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI  353 (487)
Q Consensus       275 -dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~  353 (487)
                       +..+.+||..+++..    ..+..              ...+..++|+|||+++++++ +.+.+||..+ +.....+..
T Consensus       113 ~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~-~~~~~~~~~  172 (337)
T d1pbyb_         113 QPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGLG-RDLHVMDPEA-GTLVEDKPI  172 (337)
T ss_dssp             CCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEES-SSEEEEETTT-TEEEEEECS
T ss_pred             cccceeeccccCCeEE----Eeccc--------------cCCceEEEEcCCCCEEEEEc-CCcceeeeec-CcEEEEeec
Confidence             567888998887644    44443              35678899999999999876 5678899987 666666655


Q ss_pred             cccccccccccc--------CCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCC
Q 011368          354 HEHLRPKLCDLY--------NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  425 (487)
Q Consensus       354 ~~~~~~~~~~~~--------~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  425 (487)
                      +...........        ...............+...+..++.++.+.+|+..++......+..+........+.+  
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  250 (337)
T d1pbyb_         173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP--  250 (337)
T ss_dssp             TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT--
T ss_pred             CCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc--
Confidence            443221110000        0000000111222233333344555678999999988766666666766666666665  


Q ss_pred             ccccccccceeeecccce-ecCCCCCc-cccccccCCCeEEEEEcCCCCEEEEecC-CeEEEEeC
Q 011368          426 RARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHYA  487 (487)
Q Consensus       426 ~~~~~~~~~l~~g~~~~~-~~w~~~~~-~~~~~~~~~~v~~~~~spd~~~la~~s~-~~~~i~~~  487 (487)
                      ++..     +..+  ++. .+|+.... ......+...+.+++|+|||++|++++. +.+.||++
T Consensus       251 ~~~~-----~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         251 AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             cceE-----EEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            3333     3332  345 88844322 2333456678889999999999998884 45899974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.2e-17  Score=151.76  Aligned_cols=252  Identities=9%  Similarity=0.090  Sum_probs=157.6

Q ss_pred             EEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccceeEEEEEecC
Q 011368           46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  125 (487)
Q Consensus        46 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~  125 (487)
                      .+++++.|++|+||+++....                        .+.+. ...|.            +.+..|+|  +|
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~------------------------l~~~~-~~~~~------------~~v~~la~--sp   46 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA------------------------LTLTQ-VVDVP------------GQVQPMVV--SP   46 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC------------------------EEEEE-EEECS------------SCCCCEEE--CT
T ss_pred             EEEECCCCCcEEEEEEcCCCC------------------------eEEEE-EEcCC------------CCEeEEEE--eC
Confidence            356777999999999975432                        11112 22354            77999999  68


Q ss_pred             CCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCC
Q 011368          126 NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHD  204 (487)
Q Consensus       126 ~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (487)
                      ||++|++++ .|+.|++|++..........                                            ....+.
T Consensus        47 DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~--------------------------------------------~~~~~~   82 (333)
T d1ri6a_          47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFA--------------------------------------------AESALP   82 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------------------------------------EEEECS
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEe--------------------------------------------eecccC
Confidence            999886655 58999999997654322100                                            002344


Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CCeEEEE
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV  281 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~iw  281 (487)
                      ..+..++|+|||++|+++  .++.|.+|+...... ....     ....+...+.++.++|++ +.+++++. +..|.+|
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-~~~~-----~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-VGVV-----DVVEGLDGCHSANISPDN-RTLWVPALKQDRICLF  155 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-EEEE-----EEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEE
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccc-eecc-----cccCCCccceEEEeeecc-eeeeccccccceeeEE
Confidence            557789999999999887  688999999874332 2221     123455667889999999 77777664 5689999


Q ss_pred             EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCceeeeeeccccccc
Q 011368          282 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP  359 (487)
Q Consensus       282 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~  359 (487)
                      +................           .........++|++++.+++... . +...+|+...................
T Consensus       156 ~~~~~~~~~~~~~~~~~-----------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  224 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVT-----------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE  224 (333)
T ss_dssp             EECTTSCEEEEEEEEEE-----------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred             EeccCCcceeeeceeee-----------eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeec
Confidence            98775432100000000           01124567899999999887664 3 78888887643322221111000000


Q ss_pred             ccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeCCCCc
Q 011368          360 KLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSA  404 (487)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~~~~~  404 (487)
                         ..   ........+++++|+++++.. ..++.+.+|++.....
T Consensus       225 ---~~---~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         225 ---NF---SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             ---TC---CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             ---CC---CccccceeEEEecccCceeeecccCCeEEEEEEcCCCC
Confidence               00   011122478999999876654 5678999999986533

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=4.7e-18  Score=160.15  Aligned_cols=276  Identities=11%  Similarity=-0.005  Sum_probs=175.1

Q ss_pred             EEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCcee
Q 011368          129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNIN  208 (487)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  208 (487)
                      ++++.+.|++|.|||..+++.+...                                               ..+ ..+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~-----------------------------------------------~~g-~~~~   65 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVL-----------------------------------------------DTG-YAVH   65 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEE-----------------------------------------------ECS-SCEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEE-----------------------------------------------eCC-CCee
Confidence            4588899999999999999876652                                               333 3589


Q ss_pred             EEEeCCCCCEEEEe-cCCeEEEEEccCCCcee-EEeecCCCCCCCCCCcEEEEEEecCCCCEE-EEEeCCCeEEEEEccC
Q 011368          209 SISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ  285 (487)
Q Consensus       209 ~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~iwd~~~  285 (487)
                      .++|+|||++++++ .|+.|++||+.+.+... ..+    ....+|.+.+.++.|+|+| ++| ++++.++.|++||..+
T Consensus        66 ~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i----~~~~~~~~~~~s~~~SpDG-~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2          66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----KIGSEARSIETSKMEGWED-KYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----ECCSEEEEEEECCSTTCTT-TEEEEEEEETTEEEEEETTT
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE----ecCCCCCCeEEecccCCCC-CEEEEEcCCCCeEEEEeCcc
Confidence            99999999999998 99999999998654322 111    1223455666777788999 764 7788899999999999


Q ss_pred             CccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC-CeEEEEeCCCCCceeeeeeccccccccccc
Q 011368          286 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  363 (487)
Q Consensus       286 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  363 (487)
                      ++..    ..+..|.......  ...+......+.++|+|..++.. .+ +.|.+||... .+.......+....     
T Consensus       141 ~~~~----~~~~~~~~~~~~~--~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~-~~~~~~~~i~~g~~-----  208 (432)
T d1qksa2         141 LEPK----KIQSTRGMTYDEQ--EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD-LNNLKTTEISAERF-----  208 (432)
T ss_dssp             CCEE----EEEECCEECTTTC--CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC-SSEEEEEEEECCSS-----
T ss_pred             ccce----eeeccCCccccce--eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC-CCcceEEEEcccCc-----
Confidence            8765    4444432221111  12235667889999999987654 44 9999999876 44433322222111     


Q ss_pred             ccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeCCCCceeEEEeccC---CccccceEeeCCccccccccceeeec
Q 011368          364 LYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK---NENRKPILQAAPRARRSSLSNLTRGL  439 (487)
Q Consensus       364 ~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~l~~g~  439 (487)
                               ...++|+|||+++++++. ++.+.++|..+++. ...+....   .......+.....+..     ..+..
T Consensus       209 ---------~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~g~~-----~~~~~  273 (432)
T d1qksa2         209 ---------LHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANFVHPTFGPV-----WATSH  273 (432)
T ss_dssp             ---------EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEEEETTTEEE-----EEEEB
T ss_pred             ---------cccceECCCCCEEEEeccccceEEEeecccceE-EEEeccCccccccCcccceecCCCCce-----ecccc
Confidence                     148999999998877765 56788999887643 33332211   1111222222112221     22221


Q ss_pred             -ccce-ecCCCCCccccccccCCCeEEEEEcCCCCEEEEec-CCeEEEEe
Q 011368          440 -YRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  486 (487)
Q Consensus       440 -~~~~-~~w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~~~~~i~~  486 (487)
                       .++. .+|...  ......+...|....++|++..+++++ .+..++|.
T Consensus       274 lg~~~v~~~~~~--~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         274 MGDDSVALIGTD--PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             SSSSEEEEEECC--TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             cCCceEEecccc--cccccccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence             1333 455322  122345666788888888888777776 45567764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.4e-17  Score=147.45  Aligned_cols=268  Identities=12%  Similarity=0.098  Sum_probs=172.9

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           27 EELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..+.|.+.|..|+|||||++|++++ .|+.|++|++......                       .+..... .+.    
T Consensus        31 ~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-----------------------~~~~~~~-~~~----   82 (333)
T d1ri6a_          31 QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------------------LTFAAES-ALP----   82 (333)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------------------EEEEEEE-ECS----
T ss_pred             EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-----------------------EEEeeec-ccC----
Confidence            3456888999999999999996555 5899999999866431                       1111111 122    


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                              ..+..++|  +|||++|++++ .++.+.+|+...........                              
T Consensus        83 --------~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~------------------------------  122 (333)
T d1ri6a_          83 --------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD------------------------------  122 (333)
T ss_dssp             --------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEE------------------------------
T ss_pred             --------CCceEEEE--cCCCCEEeecccCCCceeeeccccccceeccc------------------------------
Confidence                    45778999  68999998887 47789999987665433211                              


Q ss_pred             eeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          185 GYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                                     ...+...+.++.++|+++.++++  .+..|.+|+..............  ...........++|+
T Consensus       123 ---------------~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~p~~i~~~  185 (333)
T d1ri6a_         123 ---------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTVEGAGPRHMVFH  185 (333)
T ss_dssp             ---------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECSTTCCEEEEEEC
T ss_pred             ---------------ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeeecCCCccEEEEe
Confidence                           14566678899999999988886  67789999988554433221100  112234557889999


Q ss_pred             cCCCCEEEEEe-CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEE
Q 011368          263 PIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLW  339 (487)
Q Consensus       263 p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iw  339 (487)
                      +++ ..++... ..+...+|+................   .+.    ..........+++++++++++...  ++.+.+|
T Consensus       186 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~  257 (333)
T d1ri6a_         186 PNE-QYAYCVNELNSSVDVWELKDPHGNIECVQTLDM---MPE----NFSDTRWAADIHITPDGRHLYACDRTASLITVF  257 (333)
T ss_dssp             TTS-SEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC---SCT----TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccc-eeEEeeccccCceEEEeecccccceeeeeeeee---eec----CCCccccceeEEEecccCceeeecccCCeEEEE
Confidence            998 6665554 5678888887654322111111111   000    011134567889999999888754  4899999


Q ss_pred             eCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeC
Q 011368          340 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG  400 (487)
Q Consensus       340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~  400 (487)
                      ++...+.............          .   ++.++|+|||++|++++ .++.|.+|++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~----------~---p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         258 SVSEDGSVLSKEGFQPTET----------Q---PRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EECTTSCCEEEEEEEECSS----------S---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEcCCCCEEEEEEEeCCCC----------C---eeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            9876333332222111100          0   14799999999987765 56899999664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=6.4e-16  Score=142.78  Aligned_cols=319  Identities=10%  Similarity=-0.056  Sum_probs=198.2

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-----cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccc
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (487)
                      .+..++.+++++|||+.++...     .++.|.+||..+++.                           +..+..+.   
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~---------------------------~~~~~~~~---   67 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF---   67 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE---------------------------EEEEeCCC---
Confidence            3677899999999999887642     345788999887764                           35565554   


Q ss_pred             ccccccccccceeEEEEEecCCCcEEEEEe----------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368          105 DYLKSLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus       105 ~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                                 ...++|  +|||++|++++          .++.|.+||..+++............              
T Consensus        68 -----------~~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--------------  120 (373)
T d2madh_          68 -----------LPNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------------  120 (373)
T ss_pred             -----------CccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce--------------
Confidence                       236889  68999998874          45789999999988765432211110              


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDD  251 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  251 (487)
                                                ..-......+.|+++++.++..   .++.+.+|+.... +..           .
T Consensus       121 --------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-~~~-----------~  162 (373)
T d2madh_         121 --------------------------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS-SDD-----------Q  162 (373)
T ss_pred             --------------------------eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC-eEE-----------E
Confidence                                      0001123467888888877664   4567888888733 222           2


Q ss_pred             CCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          252 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       252 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      +.....++.++|++...+++.+.|+.+.+|+...+...    .....+...       .+.......+.+++++.+++.+
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  231 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG----AGLVGAMLT-------AAQNLLTQPAQANKSGRIVWPV  231 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee----EEEeeeccc-------cCccceeeeEEECCCceEEEec
Confidence            33446788999999566678889999999999887644    222221000       1112334556777877777777


Q ss_pred             eCCeEEEEeCCCCCceee--eeecccccccccccccCCCCcceeeEEEEcCCCCEE----------EEEcCCCcEEEEEe
Q 011368          332 DYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF----------ATGSYSNLLRIFSH  399 (487)
Q Consensus       332 ~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l----------~sg~~dg~i~iwd~  399 (487)
                      .++.+.+|+... .....  ............  ......   ...+++++++..+          ++...++.+.+||.
T Consensus       232 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         232 YSGKILQADISA-AGATNKAPIDALSGGRKAD--TWRPGG---WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             CCceEEEEEcCC-CeEEEEEeeccccCcEEee--eeccCc---ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence            779999999875 33221  111111110000  000000   0245666655544          45566778999999


Q ss_pred             CCCCceeEEEeccCCccccceEeeCCccc--cccccceeeecccce-ecCC--CCCccccccccCCCeEEEEEcC
Q 011368          400 GVGSAGGITVEAGKNENRKPILQAAPRAR--RSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHP  469 (487)
Q Consensus       400 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~l~~g~~~~~-~~w~--~~~~~~~~~~~~~~v~~~~~sp  469 (487)
                      .+++. ...+. +...+..++|+|  |++  +     +++++.++. ++|+  .++.+.....+......+++.+
T Consensus       306 ~t~~~-~~~~~-~~~~~~~~a~sp--DG~~~l-----~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         306 LVGQT-SSQIS-LGHDVDAISVAQ--DGGPDL-----YALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CCCcE-EEEec-CCCCeeEEEECC--CCCEEE-----EEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            98854 33443 445677899988  554  4     578888888 9994  4555555555555555555544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.9e-16  Score=145.30  Aligned_cols=133  Identities=12%  Similarity=0.081  Sum_probs=87.9

Q ss_pred             EEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-
Q 011368          256 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-  333 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-  333 (487)
                      +....+.+++ ..++.++.++.+.+|++..+.....  .....+...   .............+++++++..++... + 
T Consensus       197 ~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~---~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~  270 (355)
T d2bbkh_         197 INHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEA---ERADGWRPGGWQQVAYHRALDRIYLLVDQR  270 (355)
T ss_dssp             CSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHH---HHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             eeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEE--eccCCcccc---eEeeeeeccceEEEEEeCCCCeEEEEeccC
Confidence            4455677777 7888899999999999988753211  111110000   000000112345688999999887542 1 


Q ss_pred             ---------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC--EEEEEcCCCcEEEEEeCCC
Q 011368          334 ---------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       334 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~--~l~sg~~dg~i~iwd~~~~  402 (487)
                               +.|.+||..+ ++.+..+......                .+++|+|||+  ++++++.|+.|++||++++
T Consensus       271 ~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         271 DEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             CTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                     4799999987 7777777654432                4899999998  4567788999999999998


Q ss_pred             CceeEEEecc
Q 011368          403 SAGGITVEAG  412 (487)
Q Consensus       403 ~~~~~~~~~~  412 (487)
                      +. +.++..+
T Consensus       334 ~~-~~~i~~~  342 (355)
T d2bbkh_         334 EE-LRSVNQL  342 (355)
T ss_dssp             CE-EEEECCC
T ss_pred             CE-EEEEeCc
Confidence            54 5566544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=9.5e-15  Score=134.74  Aligned_cols=274  Identities=8%  Similarity=0.004  Sum_probs=164.0

Q ss_pred             EEEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..++|+|||++|++++          .++.|.+||..+++.                           ...+..+...  
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~~~~~~~~--  119 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAP--  119 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE---------------------------EEEEecCCcc--
Confidence            3799999999998875          457899999988764                           2333333300  


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEE--eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcc
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (487)
                         ..........+.|+  ++++.++..  ..++.+.+|+....+..                                 
T Consensus       120 ---~~~~~~~~~~~~~s--~dg~~~~v~~~~~~~~~~~~~~~~~~~~---------------------------------  161 (373)
T d2madh_         120 ---RFDVGPYSWMNANT--PNNADLLFFQFAAGPAVGLVVQGGSSDD---------------------------------  161 (373)
T ss_pred             ---eeEeccCCCcEEEE--eCCCcEEEEEEcCCCceEEeeccCCeEE---------------------------------
Confidence               00000122456774  566655544  34567888887765532                                 


Q ss_pred             eeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEE-Ee-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE
Q 011368          184 HGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  261 (487)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  261 (487)
                                        .+.....++.++|+++.++ +. .|+.+.+|+..... ........ ....+.......+.+
T Consensus       162 ------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~  221 (373)
T d2madh_         162 ------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA-AGAGLVGA-MLTAAQNLLTQPAQA  221 (373)
T ss_pred             ------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce-eeEEEeee-ccccCccceeeeEEE
Confidence                              2333456888999987764 45 89999999998443 33221110 011122223344556


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEE----------EE
Q 011368          262 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL----------SR  331 (487)
Q Consensus       262 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~----------s~  331 (487)
                      .+++  .++..+.++.+.+|+.........  ..+..+..   ..............+++++++..++          +.
T Consensus       222 ~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  294 (373)
T d2madh_         222 NKSG--RIVWPVYSGKILQADISAAGATNK--APIDALSG---GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             CCCc--eEEEecCCceEEEEEcCCCeEEEE--EeeccccC---cEEeeeeccCcceeeEEecCCCeEEEecCCCceEEee
Confidence            6654  566677889999999887653211  11111000   0000000112334556666665544          22


Q ss_pred             -eCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE--EEEEcCCCcEEEEEeCCCCceeEE
Q 011368          332 -DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH--FATGSYSNLLRIFSHGVGSAGGIT  408 (487)
Q Consensus       332 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~--l~sg~~dg~i~iwd~~~~~~~~~~  408 (487)
                       .++.+.+||..+ ++.+..+......                ..++|+|||+.  +++++.|+.|+|||+.+++ ....
T Consensus       295 ~~~~~v~~~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~-~~~~  356 (373)
T d2madh_         295 AAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQS  356 (373)
T ss_pred             cCCCeEEEEECCC-CcEEEEecCCCCe----------------eEEEECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEE
Confidence             237899999987 7777776644432                48999999984  4688999999999999984 4677


Q ss_pred             EeccCCccccceE
Q 011368          409 VEAGKNENRKPIL  421 (487)
Q Consensus       409 ~~~~~~~v~~~~~  421 (487)
                      +..+...-..+++
T Consensus       357 ~~~~g~~P~~l~~  369 (373)
T d2madh_         357 TVELGSGPQVLSV  369 (373)
T ss_pred             ECCCCCCCcEEEE
Confidence            7766554444444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.68  E-value=3.4e-15  Score=142.45  Aligned_cols=341  Identities=9%  Similarity=0.027  Sum_probs=184.1

Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      .+.|.++++++..  .|+.+.+||+.+++..       ..+               -...+..|.            ..|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~-------~~~---------------~~~~~~~~~------------~~i   64 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSS-------VFL---------------ENSTFDEFG------------HSI   64 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEE-------EEE---------------CTTTTTTSS------------SCC
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEE-------EEE---------------chhhhhhcc------------Ccc
Confidence            5789999988764  4788999999988642       000               001334444            779


Q ss_pred             eEEEEEecCCCcEEEEEeC---------CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                      .++.|  +|||++|+.++.         ++.+.+||+.+++...+                                   
T Consensus        65 ~~~~~--SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l-----------------------------------  107 (470)
T d2bgra1          65 NDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-----------------------------------  107 (470)
T ss_dssp             CEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------------------------
T ss_pred             ceeEE--CCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc-----------------------------------
Confidence            99999  689999998753         56788999998875443                                   


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecC-CC-CCC---------CCCCcE
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMK-PS-NMD---------DLTEVI  256 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~-~~-~~~---------~~~~~v  256 (487)
                                   ..+...+..+.|||||+.||...++.+++|+...+ ...++.... .. .+.         ...+..
T Consensus       108 -------------~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g-~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1         108 -------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL-PSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             -------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS-CCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             -------------ccCCccccccccccCcceeeEeecccceEEECCCC-ceeeeeeccCCCcccccccceeeeeeecCCc
Confidence                         67888899999999999999998889999998844 333321000 00 000         012234


Q ss_pred             EEEEEecCCCCEEEEEeCCC-eEEEEEccC---Ccccccc-----------------ceeecccccccCc----------
Q 011368          257 TSAEFHPIYCNLLAYSSSRG-FVRLVDMRQ---SALCDHS-----------------ARILRDAAESHGS----------  305 (487)
Q Consensus       257 ~~v~~~p~~~~~l~~~~~dg-~i~iwd~~~---~~~~~~~-----------------~~~~~~h~~~~~~----------  305 (487)
                      ..+.|+|+| +.|+....|. .+..|++..   .......                 +..+... .....          
T Consensus       174 ~~~~wSPDG-k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~  251 (470)
T d2bgra1         174 SALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQITA  251 (470)
T ss_dssp             BCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGG-GCCSSSCCCEEEECC
T ss_pred             cccEECCCC-CccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECC-CcceeeeccccccCC
Confidence            567899999 8898887643 244443321   1000000                 0000000 00000          


Q ss_pred             cccccccccceeEEEEcCCCCEEEEEe----C-CeEEEEeCCCC-CceeeeeecccccccccccccCCCCcceeeEEEEc
Q 011368          306 KSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  379 (487)
Q Consensus       306 ~~~~~~~~~~v~~v~~s~~~~~l~s~~----d-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  379 (487)
                      ..........+..+.|.++++.++...    + ..+.++++... +..................+..  ..  .....++
T Consensus       252 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~--~~--~~~~~~~  327 (470)
T d2bgra1         252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR--FR--PSEPHFT  327 (470)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS--SS--CCCCEEC
T ss_pred             ccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeec--cc--CCCceee
Confidence            000111234567788988887666432    1 23445544321 2222221111000000000000  00  0123344


Q ss_pred             CC--CCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeecccc---e-ecCCC----C
Q 011368          380 GD--GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ---A-HENSS----S  449 (487)
Q Consensus       380 ~d--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~---~-~~w~~----~  449 (487)
                      ++  +.+++....||..+||.+...+.....+..+...+..+ +.+..+..+     +.+...+.   . ++|..    +
T Consensus       328 ~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iy-----f~a~~~~~~p~~~~ly~v~~~g~  401 (470)
T d2bgra1         328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLY-----YISNEYKGMPGGRNLYKIQLSDY  401 (470)
T ss_dssp             TTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEE-----EEESCGGGCTTCBEEEEEETTCT
T ss_pred             ecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEE-----EEEecCCCCcceEEEEEEECCCC
Confidence            43  44466777888777776655444455555555555554 344323322     23322221   1 45511    1


Q ss_pred             Ccc----ccccccCCCeEEEEEcCCCCEEEE
Q 011368          450 GHH----ELSYNLSSKLLHLAWHPTTNLIAC  476 (487)
Q Consensus       450 ~~~----~~~~~~~~~v~~~~~spd~~~la~  476 (487)
                      ...    ....++...+..++|||||++++.
T Consensus       402 ~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~  432 (470)
T d2bgra1         402 TKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (470)
T ss_dssp             TCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             CceeEecccccCCCCCEEEEEECCCCCEEEE
Confidence            111    123467778999999999999774

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=2.3e-13  Score=124.33  Aligned_cols=275  Identities=12%  Similarity=0.035  Sum_probs=159.9

Q ss_pred             cCCCcEEEEEe-----CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeee
Q 011368          124 APNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKV  198 (487)
Q Consensus       124 ~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (487)
                      +||++.++...     .+..|.+||..+++.....                                             
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~---------------------------------------------   44 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---------------------------------------------   44 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---------------------------------------------
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE---------------------------------------------
Confidence            68999887653     4667999999998765431                                             


Q ss_pred             ecccCCCceeEEEeCCCCCEEEEe-----------cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          199 YPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       199 ~~~~~~~~v~~i~~s~~~~~l~s~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                        ..+  ....++|+|||++|+++           .|+.|++||..+. +....+................++|+|++ .
T Consensus        45 --~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~  118 (355)
T d2bbkh_          45 --DGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDG-K  118 (355)
T ss_dssp             --EEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTS-S
T ss_pred             --ECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC-CEEEEEecCCcceeecCCCCceEEEecCC-C
Confidence              222  23368999999988763           3689999999954 44444322211112222334568999999 8


Q ss_pred             EEEEEe--CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCC
Q 011368          268 LLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRM  343 (487)
Q Consensus       268 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~  343 (487)
                      .+++++  .+..+.+|+..+++..    ..+..+...    ..  .-......+.+++|++.++...  ++.+.+++...
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~--~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFK----RMLDVPDCY----HI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEE----EEEECCSEE----EE--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             eeEEecCCCCceeeeeecCCCcEe----eEEecCCcc----eE--eecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            777765  4678999999988654    333321000    00  0012344567778877776643  26666666543


Q ss_pred             CCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce-eEEEeccCCcccc----
Q 011368          344 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENRK----  418 (487)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~----  418 (487)
                       ....     +....               ....+++++..++.++.++.+++|++..+... ......+......    
T Consensus       189 -~~~~-----~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (355)
T d2bbkh_         189 -FHPE-----DEFLI---------------NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  247 (355)
T ss_dssp             -CSCT-----TSCBC---------------SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             -ccce-----eccee---------------eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeee
Confidence             2111     11111               24677788888999999999999999877432 2222333322222    


Q ss_pred             ------ceEeeCCccccccccceeeeccc----------ce-ecCCCC-CccccccccCCCeEEEEEcCCCCE--EEEec
Q 011368          419 ------PILQAAPRARRSSLSNLTRGLYR----------QA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNL--IACAN  478 (487)
Q Consensus       419 ------~~~~~~~~~~~~~~~~l~~g~~~----------~~-~~w~~~-~~~~~~~~~~~~v~~~~~spd~~~--la~~s  478 (487)
                            +++++  ++..     +.....+          .. .+|+.. ............+.+++|+|||+.  +++++
T Consensus       248 p~~~~~~~~~~--d~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         248 PGGWQQVAYHR--ALDR-----IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             ECSSSCEEEET--TTTE-----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET
T ss_pred             ccceEEEEEeC--CCCe-----EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEEC
Confidence                  33333  2222     2221111          12 455322 122222344556789999999984  34444


Q ss_pred             -CCeEEEEeC
Q 011368          479 -GNSLFFHYA  487 (487)
Q Consensus       479 -~~~~~i~~~  487 (487)
                       ++.+++|.+
T Consensus       321 ~d~~i~v~D~  330 (355)
T d2bbkh_         321 GDKTLYIHDA  330 (355)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCEEEEEEC
Confidence             456999974

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=2.5e-13  Score=124.82  Aligned_cols=79  Identities=10%  Similarity=0.080  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCCEEEEEe--C--------CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE-
Q 011368          316 ISDIKFANDGQHLLSRD--Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-  384 (487)
Q Consensus       316 v~~v~~s~~~~~l~s~~--d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-  384 (487)
                      ...+++++++..++...  +        ..|.+||..+ ++.+..+......                .+++|+|||+. 
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~  328 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASD  328 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCE
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCce----------------eEEEECCCCCEE
Confidence            34578899988776532  1        3699999987 7777776644332                48999999973 


Q ss_pred             -EEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          385 -FATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       385 -l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                       ++++..|+.|++||..+++. +..++..
T Consensus       329 ly~s~~~~~~v~v~D~~tgk~-~~~i~~g  356 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQD-QSSVELD  356 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEE-EEECCCC
T ss_pred             EEEEeCCCCeEEEEECCCCCE-EEEEECC
Confidence             46777889999999999844 4455433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=9.9e-14  Score=126.89  Aligned_cols=282  Identities=9%  Similarity=-0.001  Sum_probs=154.8

Q ss_pred             EEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccCCCceeE
Q 011368          130 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINS  209 (487)
Q Consensus       130 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  209 (487)
                      +++++.+|+|++|++.+++.......          | .+++..... ........    +....... .-..|......
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpV----------f-spd~~~g~g-~~~es~~v----l~~~~~~~-~gd~hhP~~s~   76 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPV----------F-NVDSATGWG-ITNESKEI----LGGDQQYL-NGDCHHPHISM   76 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECS----------S-SBCTTTCTT-TSHHHHHH----HCSSSCCS-CCCBCCCEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEe----------E-cCCCCEEEE-ECCccceE----Eecccccc-cCcccCCCcce
Confidence            56678899999999998887654311          1 122211111 10000000    00000000 01334455566


Q ss_pred             EEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeE---------
Q 011368          210 ISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV---------  278 (487)
Q Consensus       210 i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i---------  278 (487)
                      ...+|||++|++.  .+.+|.++|+++ .+..+++.+      .+...+..++|+|++....+++..+..+         
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t-~k~~~ii~i------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDI-MKTDKITHI------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTT-TEEEEEEEC------TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCC-CcEeeEEec------CCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            6678999999776  889999999994 445554422      2456789999999983323333333233         


Q ss_pred             ---------EEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--Ce------------
Q 011368          279 ---------RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN------------  335 (487)
Q Consensus       279 ---------~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~------------  335 (487)
                               ..+|..+.+..    .....              ......+.++|+|+++++.+.  ..            
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~----~qI~v--------------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVA----WQVIV--------------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             ccccccceEEeecCccceee----EEEec--------------CCCccceEECCCCCEEEEEecCCCceEEEeccCcceE
Confidence                     33555554322    11111              235678889999998876542  21            


Q ss_pred             ----------------------------EEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEE-
Q 011368          336 ----------------------------LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-  386 (487)
Q Consensus       336 ----------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-  386 (487)
                                                  +.+++... ...+..+.....+                ..+.++|||++++ 
T Consensus       212 d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgksP----------------hGv~vSPDGkyl~~  274 (441)
T d1qnia2         212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKNP----------------HGLNTSPDGKYFIA  274 (441)
T ss_dssp             CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSSC----------------CCEEECTTSCEEEE
T ss_pred             EEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCCc----------------cCceECCCCCEEEE
Confidence                                        22222221 2233333333322                4799999999875 


Q ss_pred             EEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe-----------eCCccccccccceeeecccce-ecCCCCC----
Q 011368          387 TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ-----------AAPRARRSSLSNLTRGLYRQA-HENSSSG----  450 (487)
Q Consensus       387 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~~~~l~~g~~~~~-~~w~~~~----  450 (487)
                      ++..+++|.|||+.+..   ..+.++.+....+...           ...++..     ..+...|.. ..|+.+.    
T Consensus       275 ~~~~~~tvsv~d~~k~~---~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~-----yts~~~ds~v~kw~~~~~~~~  346 (441)
T d1qnia2         275 NGKLSPTVSVIAIDKLD---DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA-----YTTLFIDSQVCKWNIADAIKH  346 (441)
T ss_dssp             ECTTSSBEEEEEGGGHH---HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE-----EEEETTTTEEEEEEHHHHHHH
T ss_pred             eCCcCCcEEEEEeehhh---hHhhccCCcceEEEeecccccCcccceecCCceE-----EEcccccceEEEeccchhhhh
Confidence            56788999999997532   1122222222222221           1123443     666666666 6673221    


Q ss_pred             -------ccc------cccccCCCeEEEEEcCCCCEEEEec
Q 011368          451 -------HHE------LSYNLSSKLLHLAWHPTTNLIACAN  478 (487)
Q Consensus       451 -------~~~------~~~~~~~~v~~~~~spd~~~la~~s  478 (487)
                             .+.      ...+|...+.+.+++|||++|++++
T Consensus       347 ~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         347 YNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             HTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             hccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence                   011      1246666677778999999999995

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=2.3e-11  Score=111.05  Aligned_cols=256  Identities=9%  Similarity=0.035  Sum_probs=146.6

Q ss_pred             cCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeeccc
Q 011368          124 APNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHA  202 (487)
Q Consensus       124 ~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (487)
                      ++||++|+.. ..+++|.++|+.+.+...+..                                              ..
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~----------------------------------------------iP  113 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITH----------------------------------------------IP  113 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEE----------------------------------------------CT
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe----------------------------------------------cC
Confidence            4689888665 578899999999987665421                                              34


Q ss_pred             CCCceeEEEeCCCCCEEEE--ecCCeE------------------EEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe
Q 011368          203 HDFNINSISNNSDCETFVS--ADDLRI------------------NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  262 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s--~~d~~i------------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  262 (487)
                      +......++|+|+++.+.+  ..+..+                  ..+|..+.....++.         .......++|+
T Consensus       114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~---------v~~~p~~v~~s  184 (441)
T d1qnia2         114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI---------VDGNLDNTDAD  184 (441)
T ss_dssp             TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE---------ESSCCCCEEEC
T ss_pred             CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe---------cCCCccceEEC
Confidence            5667889999999885433  243333                  335555433322221         12345778999


Q ss_pred             cCCCCEEEEEeCCC-eEEEEEccCCcccc------------------------ccceeecccccccCcccccccccccee
Q 011368          263 PIYCNLLAYSSSRG-FVRLVDMRQSALCD------------------------HSARILRDAAESHGSKSFFTEIIASIS  317 (487)
Q Consensus       263 p~~~~~l~~~~~dg-~i~iwd~~~~~~~~------------------------~~~~~~~~h~~~~~~~~~~~~~~~~v~  317 (487)
                      |+| +++++.+.+. .+..++..+.....                        .....+... ........++. .....
T Consensus       185 pdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~-~~~~v~~~IPv-gksPh  261 (441)
T d1qnia2         185 YTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR-GESEFTRYIPV-PKNPH  261 (441)
T ss_dssp             SSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS-SSCSSEEEECC-BSSCC
T ss_pred             CCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc-cCCceEEEEeC-CCCcc
Confidence            999 8887776542 22222221111000                        000000000 00000000111 13457


Q ss_pred             EEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEE
Q 011368          318 DIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  395 (487)
Q Consensus       318 ~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~  395 (487)
                      .+.++|||++++++.  +++|.+||+.+..   ..+..+-.....  -..+.+........+|+++|..+.+...|..|.
T Consensus       262 Gv~vSPDGkyl~~~~~~~~tvsv~d~~k~~---~~~~~~~~~~~~--~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~  336 (441)
T d1qnia2         262 GLNTSPDGKYFIANGKLSPTVSVIAIDKLD---DLFEDKIELRDT--IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVC  336 (441)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHH---HHTTTSSCGGGG--EEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CceECCCCCEEEEeCCcCCcEEEEEeehhh---hHhhccCCcceE--EEeecccccCcccceecCCceEEEcccccceEE
Confidence            799999999988764  4999999986411   111111110000  000111112234678999998888999999999


Q ss_pred             EEEeCC------C---CceeEEE-----eccCCccccceEeeCCccccccccceeeecccce-ecCCCC
Q 011368          396 IFSHGV------G---SAGGITV-----EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS  449 (487)
Q Consensus       396 iwd~~~------~---~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~~  449 (487)
                      .|++..      +   ......+     .+|...+.+..++|  +|++     |+++..-.. +.+..+
T Consensus       337 kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p--dGk~-----l~s~~k~s~dr~~~~g  398 (441)
T d1qnia2         337 KWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA--DGKW-----LVVLSKFSKDRFLPVG  398 (441)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC--CCCE-----EEEEESCCGGGSCCCS
T ss_pred             EeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC--CCcE-----EEecCccccccCcCCC
Confidence            999852      1   1223333     57888888888888  8999     999976666 555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=1.1e-10  Score=110.59  Aligned_cols=80  Identities=9%  Similarity=0.123  Sum_probs=64.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEec---------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCC
Q 011368           30 QDVDIVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (487)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l~~g~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (487)
                      .|...|.+++|||||++|+.++.         ++.+.|||+.+++.                            ..+..|
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----------------------------~~l~~~  110 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------------------------ITEERI  110 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------------------------CCSSCC
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----------------------------cccccC
Confidence            35567999999999999998753         56788999988763                            446666


Q ss_pred             CcccccccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEe
Q 011368          101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  152 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  152 (487)
                      .            +.+..+.|  +|||+++|.. .++.+.+|+..+++....
T Consensus       111 ~------------~~~~~~~~--SPDG~~ia~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         111 P------------NNTQWVTW--SPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             C------------TTEEEEEE--CSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             C------------cccccccc--ccCcceeeEe-ecccceEEECCCCceeee
Confidence            6            78999999  6899999986 567899999998876554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=1.1e-08  Score=92.93  Aligned_cols=185  Identities=8%  Similarity=-0.034  Sum_probs=108.8

Q ss_pred             CCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe-CCCeEEE
Q 011368          204 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRL  280 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~i  280 (487)
                      ...+.++.|+|+|++++++  ....|.+|+....+.....-..   .........+.++|+|++ +++++.. .++.|.+
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---~~~~~g~gPr~i~f~pdg-~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICE  219 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---eecCCCCceEEEEECCCC-ceEEEeccCCCEEEE
Confidence            4457899999999988887  5668999987755443322100   112334568999999999 6665555 5889999


Q ss_pred             EEccCCccccc-cceeeccc-ccccCccccccccccceeEEEEcCCCCEEEEEe--C-----CeEEEEeCCCCCceeeee
Q 011368          281 VDMRQSALCDH-SARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-----MNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       281 wd~~~~~~~~~-~~~~~~~h-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d-----~~i~iwd~~~~~~~~~~~  351 (487)
                      |++..+..... .......- ...+........+......+.++|||++|+++.  +     ..|..|++...+......
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            99977543210 00000000 000001111122344567899999999998752  2     347788876533322221


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcC-CCCEEEEEc-CCCcEEEEEeCCC
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGS-YSNLLRIFSHGVG  402 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~sg~-~dg~i~iwd~~~~  402 (487)
                      ........       ...   .+.++++| +|++|+++. .++.|.+|+++..
T Consensus       300 ~~~~~~~~-------G~~---p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         300 FLSPTPTS-------GGH---SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSC-------CTT---CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EeeEEEcC-------CCC---ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            11110000       000   14799998 899887664 6799999998754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=2.8e-10  Score=104.01  Aligned_cols=260  Identities=8%  Similarity=-0.021  Sum_probs=143.8

Q ss_pred             EEEEEcCCCCEEEEEe----------cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccc
Q 011368           36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (487)
Q Consensus        36 ~~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (487)
                      ..++|+|||++|++.+          .|+.|.+||..+++.                           ...+..+...  
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~---------------------------~~~i~~p~~~--  118 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAP--  118 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------EEEEEETTSC--
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE---------------------------eeeecCCccc--
Confidence            3589999999988754          467899999887764                           2223222100  


Q ss_pred             cccccccccceeEEEEEecCCCcEEEEEe-CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcce
Q 011368          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (487)
Q Consensus       106 ~~~~~~~~~~I~~v~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (487)
                         ..........++|  ++||++++++. .++.+.+||+.+++............     ..+.....+.....+.. .
T Consensus       119 ---~~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~Dg~-~  187 (368)
T d1mdah_         119 ---RFSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH-----IHPGAAATHYLGSCPAS-L  187 (368)
T ss_dssp             ---SCCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC-----CEEEETTEEECCCCTTS-C
T ss_pred             ---eecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce-----EccCCCceEEEEcCCCC-E
Confidence               0000022346889  68999998876 67999999999988766543322211     11111111111111111 1


Q ss_pred             eeeeeeecccee----eeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCC-----CCCCCc
Q 011368          185 GYHLEWTENMAT----KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM-----DDLTEV  255 (487)
Q Consensus       185 ~~~~~~~~~~~~----~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~  255 (487)
                      ......+.....    ......+...+....+.+++..+.+ ..+.+++++...... ...........     ......
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g  265 (368)
T d1mdah_         188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECS
T ss_pred             EEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCce-EEEeecccccceeeeeeecCCC
Confidence            111111110000    0112344555667777877755444 445566666663322 21110000000     001112


Q ss_pred             EEEEEEecCCCCEEEEEeCC---------CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCC
Q 011368          256 ITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  326 (487)
Q Consensus       256 v~~v~~~p~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~  326 (487)
                      ...++++|++ ..++....+         ..|.+||..+++..    ..+..              ...+..++|+|||+
T Consensus       266 ~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~--------------~~~~~~~a~spDG~  326 (368)
T d1mdah_         266 FQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GHDSDAIIAAQDGA  326 (368)
T ss_dssp             SSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EEEECEEEECCSSS
T ss_pred             ceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecC--------------CCceeEEEECCCCC
Confidence            2457889988 665554322         35889999988754    33333              35688999999997


Q ss_pred             -EEE-EEe-CCeEEEEeCCCCCceeeeeeccccc
Q 011368          327 -HLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       327 -~l~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                       +|+ ++. ++.|++||..+ ++.+..+.....+
T Consensus       327 ~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~P  359 (368)
T d1mdah_         327 SDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             EEEEEEeCCCCeEEEEECCC-CCEEEEEECCCCC
Confidence             343 443 59999999997 8888888766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=1.7e-09  Score=95.63  Aligned_cols=239  Identities=11%  Similarity=0.112  Sum_probs=150.3

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .+..++++|||+++++...+++|..|+.++..                             ..+....            
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-----------------------------~~~~~~~------------   67 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-----------------------------QIHATVE------------   67 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----------------------------EEEEECS------------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-----------------------------EEEEcCC------------
Confidence            47789999999999998889988777744321                             2222333            


Q ss_pred             cceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeecc
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                      ..+.+++|  .++|+++++...++.+..|+..........                                        
T Consensus        68 ~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  105 (302)
T d2p4oa1          68 GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVET----------------------------------------  105 (302)
T ss_dssp             SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEE----------------------------------------
T ss_pred             CCcceEEE--cCCCCeEEEecCCceEEEEEecccccceee----------------------------------------
Confidence            67899999  688998888888888888887653321110                                        


Q ss_pred             ceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecC--CCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          194 MATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       194 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                          ..........+.+++.++++++++. .++.+..++.......+......  .............+.++.+  .+++
T Consensus       106 ----~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~~  179 (302)
T d2p4oa1         106 ----LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYV  179 (302)
T ss_dssp             ----EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEEE
T ss_pred             ----ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--ceee
Confidence                0012334567899999999888887 88888888887443222222111  1111222334567777643  5666


Q ss_pred             EEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCceee
Q 011368          271 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  349 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~  349 (487)
                      +.+..+.|..++......... ...+..              ......+++.++|.+.++.. ++.|..++..  ++...
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~-~~~~~~--------------~~~pdgia~d~dG~l~va~~~~~~V~~i~p~--G~~~~  242 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTDKPGE-PEIFVE--------------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD--RSTTI  242 (302)
T ss_dssp             EETTTTEEEEEEBCTTSCBCC-CEEEEE--------------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT--CCEEE
T ss_pred             ecCCCCeEEeccccccccccc-cccccC--------------CCCCcceEECCCCCEEEEEcCCCcEEEECCC--CCEEE
Confidence            777788998888876532211 111111              23467799999999777764 4888888774  33333


Q ss_pred             eeecccccccccccccCCCCcceeeEEEE---cCCCCEEEEEcCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYS  391 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~~l~sg~~d  391 (487)
                      .........             ..++++|   ++|++.|+.++..
T Consensus       243 ~~~~~~~~~-------------~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         243 IAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEecCCCCC-------------CceEEEEcCCCCCCCEEEEECCC
Confidence            332222111             1258999   6788888766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.1e-09  Score=90.76  Aligned_cols=217  Identities=15%  Similarity=0.151  Sum_probs=126.0

Q ss_pred             cceeEEEEEecCCCcEEEEEeCCC---cEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          114 EKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      ..+...+|  +|||+.||......   .+.+.+..++.....                                      
T Consensus        39 ~~~~sP~w--SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------   78 (269)
T d2hqsa1          39 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------------------------   78 (269)
T ss_dssp             SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--------------------------------------
T ss_pred             CceeeeEE--CCCCCEEEEEEeeccCcceeeeecccCceeEE--------------------------------------
Confidence            56788899  78999998765332   355555555443322                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCE
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  268 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  268 (487)
                                ..+........|+|+|+.++..  .++...++...........       ............+++++...
T Consensus        79 ----------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  141 (269)
T d2hqsa1          79 ----------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEPTWFPDSQNL  141 (269)
T ss_dssp             ----------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------CCCCSSCEEEEEECTTSSEE
T ss_pred             ----------eeeecccccceecCCCCeeeEeeecCCccceeeccccccccee-------eeeccccccccccccccccc
Confidence                      4566778889999999998875  4444444333322221111       22333444566777777334


Q ss_pred             EEEEeCCCe--EEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCC
Q 011368          269 LAYSSSRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD  344 (487)
Q Consensus       269 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~  344 (487)
                      +++...++.  |.+.++..+...     ....             .........|+|+++.++..+ + +...+|.....
T Consensus       142 ~~~~~~~g~~~i~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~  203 (269)
T d2hqsa1         142 AFTSDQAGRPQVYKVNINGGAPQ-----RITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  203 (269)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCE-----ECCC-------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             eecccccCCceEeeeecccccce-----eeec-------------ccccccccccccccceeEEEeecCCceeeeEeecc
Confidence            444445554  444555544321     1111             135677789999999988753 3 44444444332


Q ss_pred             CceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC---CCcEEEEEeCCCCceeEEEeccCCccccceE
Q 011368          345 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPIL  421 (487)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  421 (487)
                      ......+.. ....               ....|||||++|+..+.   ...|+++++..+.  ...+......+...++
T Consensus       204 ~~~~~~~~~-~~~~---------------~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~--~~~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         204 TGGVQVLSS-TFLD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAW  265 (269)
T ss_dssp             TCCEEECCC-SSSC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEE
T ss_pred             cccceEeec-Cccc---------------cceEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEEeCCCCcEEeEEe
Confidence            333333322 2211               47899999999885543   3468899987653  3445555556666677


Q ss_pred             ee
Q 011368          422 QA  423 (487)
Q Consensus       422 ~~  423 (487)
                      +|
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=1.7e-08  Score=87.86  Aligned_cols=263  Identities=13%  Similarity=0.180  Sum_probs=162.1

Q ss_pred             hhhhcCCCCCCccccccCcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEe
Q 011368           16 CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKT   95 (487)
Q Consensus        16 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (487)
                      |.+-||++..+.  .+-.....|+++++|+++++-..++.|++||.+..                            ++.
T Consensus         8 ~~~~~G~~G~~~--g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~----------------------------~~~   57 (279)
T d1q7fa_           8 YHCKFGEFGVME--GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR----------------------------FKF   57 (279)
T ss_dssp             EEEEECCBSSST--TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC----------------------------EEE
T ss_pred             EEeecCCCcCCC--CeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCC----------------------------EEE
Confidence            344466554332  23345789999999998888777889999985432                            122


Q ss_pred             eecCCCcccccccccccccceeEEEEEecCCCcEEEEE-eCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccc
Q 011368           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (487)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~I~~v~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      .+......      .........+++.. ..+..+++. +.++.|.+++.........                      
T Consensus        58 ~~~~~~~~------~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~g~~~~~~----------------------  108 (279)
T d1q7fa_          58 QFGECGKR------DSQLLYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQYGQFVRKF----------------------  108 (279)
T ss_dssp             EECCBSSS------TTCBSSEEEEEEET-TTTEEEEEECGGGCEEEEECTTSCEEEEE----------------------
T ss_pred             EecccCCC------cccccccccccccc-cccccceeccCCccccccccccccceeec----------------------
Confidence            22111000      00002334555532 233444433 3455666666543322111                      


Q ss_pred             cccCCCCcceeeeeeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCC
Q 011368          175 NEHNPPSFAHGYHLEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  253 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  253 (487)
                                               -.........+++.++++++++. ..+.+.+++..  +..+..+.     ...+.
T Consensus       109 -------------------------~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g-----~~~~~  156 (279)
T d1q7fa_         109 -------------------------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFG-----CSKHL  156 (279)
T ss_dssp             -------------------------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-----CTTTC
T ss_pred             -------------------------CCCcccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccc-----ccccc
Confidence                                     12344556789999999988887 77888888766  33443331     23455


Q ss_pred             CcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-
Q 011368          254 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  332 (487)
Q Consensus       254 ~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-  332 (487)
                      .....+++.+++ .++++....+.|.+||..... .    ..+..           .+.......|++.++|+.+++-. 
T Consensus       157 ~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~-~----~~~g~-----------~g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         157 EFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-L----RQIGG-----------EGITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             SSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-E----EEESC-----------TTTSCSEEEEEECTTCCEEEEECS
T ss_pred             cccceeeeccce-eEEeeeccccceeeeecCCce-e----eeecc-----------cccccCCcccccccCCeEEEEECC
Confidence            667889999998 888888888999999976532 2    33321           11234578899999999777643 


Q ss_pred             -CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          333 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       333 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                       ++.|.+|+..  ++.+..+.......             ..+.+++.|||.+++ ++.++.|++|.....
T Consensus       220 ~~~~v~~f~~~--G~~~~~~~~~~~~~-------------~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         220 NNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCcEEEEECCC--CCEEEEEeCCCCCC-------------CEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence             2579999853  77776665432211             115899999997555 567899999998765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=1.1e-08  Score=90.37  Aligned_cols=204  Identities=14%  Similarity=0.117  Sum_probs=129.9

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .+..+++  .+||.++++...+++|..|+..... ...                                          
T Consensus        29 ~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~g~~-~~~------------------------------------------   63 (302)
T d2p4oa1          29 FLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIH------------------------------------------   63 (302)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEE------------------------------------------
T ss_pred             CcCCEEE--CCCCCEEEEeCCCCEEEEEeCCCCE-EEE------------------------------------------
Confidence            4778999  6899999998889988888865432 211                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  273 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  273 (487)
                            ......+.+++|+++|+++++. .++.+..|+..........+.     ..........+++.+++ .++++.+
T Consensus        64 ------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~n~i~~~~~g-~~~v~~~  131 (302)
T d2p4oa1          64 ------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-----TLPDAIFLNGITPLSDT-QYLTADS  131 (302)
T ss_dssp             ------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-----ECTTCSCEEEEEESSSS-EEEEEET
T ss_pred             ------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc-----ccCCccccceeEEccCC-CEEeecc
Confidence                  3445678999999999999988 888888888764333222210     11233457889999999 8888888


Q ss_pred             CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCcee--e
Q 011368          274 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPV--A  349 (487)
Q Consensus       274 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~--~  349 (487)
                      .++.+..+|...+...     .+..+..  ...............+.+.  +..+..+.  .+.|+.++........  .
T Consensus       132 ~~~~i~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  202 (302)
T d2p4oa1         132 YRGAIWLIDVVQPSGS-----IWLEHPM--LARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPE  202 (302)
T ss_dssp             TTTEEEEEETTTTEEE-----EEEECGG--GSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred             ccccceeeeccCCcce-----eEecCCc--cceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccc
Confidence            8899988888876422     1111000  0000111112345566665  44555443  4888888876532211  1


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  400 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~  400 (487)
                      .+.....+                ..++++++|++.++...++.|..++..
T Consensus       203 ~~~~~~~p----------------dgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         203 IFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             cccCCCCC----------------cceEECCCCCEEEEEcCCCcEEEECCC
Confidence            11111111                279999999988888888998888765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-08  Score=95.46  Aligned_cols=250  Identities=13%  Similarity=0.098  Sum_probs=137.9

Q ss_pred             EEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccccee
Q 011368           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (487)
Q Consensus        38 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I~  117 (487)
                      ..|.+++.++.. ..+|.|.+||+.+++..                           ..+..+.     +.    ...+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~---------------------------~l~~~~~-----~~----~~~~~   64 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKK-----IE----SLRAI   64 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTT-----TT----TTTCS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEE---------------------------EEEcCcc-----cc----ccccc
Confidence            358888887654 46788999999877541                           1122211     00    03456


Q ss_pred             EEEEEecCCCcEEEEEe---------CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeee
Q 011368          118 RVRWCAAPNGSMFILST---------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (487)
                      ...|  +||+++++...         ..+.+.++|+.++....+..                                  
T Consensus        65 ~~~~--SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~----------------------------------  108 (465)
T d1xfda1          65 RYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP----------------------------------  108 (465)
T ss_dssp             EEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC----------------------------------
T ss_pred             eeEE--CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC----------------------------------
Confidence            6677  68999887764         35678888988877554311                                  


Q ss_pred             eeeccceeeeecccCCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEee-cCCC-CCCCCC---------CcEE
Q 011368          189 EWTENMATKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPS-NMDDLT---------EVIT  257 (487)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~---------~~v~  257 (487)
                                 .......+....|||||+.||...++.|.+.+...+ ...++.. .... .+.+..         ..-.
T Consensus       109 -----------~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~-~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1         109 -----------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             -----------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             -----------ccCCccccceeeeccCCceEEEEecceEEEEecCCC-ceEEEecccCcceeeccccchhhhhhhccccc
Confidence                       123344566788999999999998889999988743 3333321 1100 000111         1124


Q ss_pred             EEEEecCCCCEEEEEeC-CCeEEEEEccCCc-cccccceeecc-cccccCc--------------------ccccccccc
Q 011368          258 SAEFHPIYCNLLAYSSS-RGFVRLVDMRQSA-LCDHSARILRD-AAESHGS--------------------KSFFTEIIA  314 (487)
Q Consensus       258 ~v~~~p~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~-h~~~~~~--------------------~~~~~~~~~  314 (487)
                      .+-|+|+| +.||.... +..+..+.+.... ........+.- ....+.+                    .........
T Consensus       177 a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         177 AHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             eEEECCCC-CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            67899999 88888753 3445454432210 00000000000 0000000                    000112233


Q ss_pred             ceeEEEEcCCCCEEEEEe----C-CeEEEEeCCCCCceeeeeeccc-ccccccccccCCCCcceeeEEEEcCCCCEE
Q 011368          315 SISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHF  385 (487)
Q Consensus       315 ~v~~v~~s~~~~~l~s~~----d-~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  385 (487)
                      .+..+.|+|++++++...    + ..+.++|..+ +.....+.... ..+..        ..   ....|+|||+.+
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~--------~~---~~p~~~~dg~~~  320 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHR--------QN---EEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCC--------CC---CCCEECTTSCSE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEec--------cC---CceeEccCCCee
Confidence            578899999998777642    2 4688889886 55544443222 11100        00   246899999854

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=2.2e-08  Score=86.18  Aligned_cols=240  Identities=10%  Similarity=0.078  Sum_probs=144.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEE-ecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccc
Q 011368           29 LQDVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (487)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (487)
                      +.+.-....|+++++|++.++. +..+.+..++..+...                          ......+.       
T Consensus        10 ~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~~-------   56 (260)
T d1rwia_          10 IDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------------------------TVLPFNGL-------   56 (260)
T ss_dssp             CCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE--------------------------EECCCCSC-------
T ss_pred             CCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE--------------------------EEeccCCc-------
Confidence            3444567899999999976654 4556777666443321                          11111111       


Q ss_pred             cccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeee
Q 011368          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (487)
Q Consensus       108 ~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (487)
                            .....|++  ++++.++++....+.+++++-.+.....                                    
T Consensus        57 ------~~p~gvav--~~~g~i~v~d~~~~~i~~~~~~~~~~~~------------------------------------   92 (260)
T d1rwia_          57 ------YQPQGLAV--DGAGTVYVTDFNNRVVTLAAGSNNQTVL------------------------------------   92 (260)
T ss_dssp             ------CSCCCEEE--CTTCCEEEEETTTEEEEECTTCSCCEEC------------------------------------
T ss_pred             ------cCceEEEE--cCCCCEEEeeeeeceeeeeeeccceeee------------------------------------
Confidence                  23567888  5788877776666666555433322111                                    


Q ss_pred             eeeeccceeeeecccCCCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          188 LEWTENMATKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                  .........++++.++++++++- .+..+..++......  ...     ...+ ......++++|++ 
T Consensus        93 ------------~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~~-----~~~~-~~~p~~i~~~~~g-  151 (260)
T d1rwia_          93 ------------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVL-----PFTG-LNDPDGVAVDNSG-  151 (260)
T ss_dssp             ------------CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EEC-----CCCS-CCSCCEEEECTTC-
T ss_pred             ------------eeeeeeecccccccccceeEeecccccccccccccccee--eee-----eecc-cCCcceeeecCCC-
Confidence                        02223456889999999888876 777787777663222  111     1111 2334789999999 


Q ss_pred             CEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCC
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  345 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~  345 (487)
                      +++++...++.|..+|.......     .+..            ..-.....+++.++|+++++... +.|..++...  
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~~~-----~~~~------------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--  212 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNNQV-----VLPF------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--  212 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEE-----ECCC------------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--
T ss_pred             CEeeeccccccccccccccceee-----eeec------------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--
Confidence            88888888889999988765321     1111            01245688999999988777654 7888887653  


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEe
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  399 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~  399 (487)
                      .....+....-.              ....++++++|.++++-..+++|+.++.
T Consensus       213 ~~~~~~~~~~~~--------------~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         213 TTSTVLPFTGLN--------------TPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             SCCEECCCCSCC--------------CEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CeEEEEccCCCC--------------CeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            222222111100              1158999999988877677776665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=9.4e-08  Score=84.40  Aligned_cols=251  Identities=11%  Similarity=0.110  Sum_probs=146.6

Q ss_pred             cEEEEEEcCCCCEEEEEec-------CCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (487)
                      ..-.++|.++|+++++...       +|+|..||..+++..                         .........     
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~-------------------------~~~~~~~~~-----   68 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNG-----   68 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETT-----
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE-------------------------EEECCcccc-----
Confidence            3557899999998776432       466777777665421                         000000000     


Q ss_pred             ccccccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceee
Q 011368          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (487)
Q Consensus       107 ~~~~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (487)
                           ....-..++|  .+++..++++...+.|...+.+++....... .                              
T Consensus        69 -----~~g~P~Gl~~--~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~-~------------------------------  110 (314)
T d1pjxa_          69 -----YGGIPAGCQC--DRDANQLFVADMRLGLLVVQTDGTFEEIAKK-D------------------------------  110 (314)
T ss_dssp             -----EECCEEEEEE--CSSSSEEEEEETTTEEEEEETTSCEEECCSB-C------------------------------
T ss_pred             -----CCCcceeEEE--eCCCCEEEEEECCCeEEEEeCCCcEEEEEec-c------------------------------
Confidence                 0023567888  6788888887776778888876554221100 0                              


Q ss_pred             eeeeeccceeeeecccC-CCceeEEEeCCCCCEEEEe-c---------------CCeEEEEEccCCCceeEEeecCCCCC
Q 011368          187 HLEWTENMATKVYPHAH-DFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNM  249 (487)
Q Consensus       187 ~~~~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~-~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~  249 (487)
                                   ..+. -...+.+++.++|++.++- .               .+.|..++.+  +....+.       
T Consensus       111 -------------~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~~-------  168 (314)
T d1pjxa_         111 -------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVD-------  168 (314)
T ss_dssp             -------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEE-------
T ss_pred             -------------ccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--CceeEee-------
Confidence                         0111 1235788999999888873 2               1234333333  3332221       


Q ss_pred             CCCCCcEEEEEEecCCCC-----EEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCC
Q 011368          250 DDLTEVITSAEFHPIYCN-----LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  324 (487)
Q Consensus       250 ~~~~~~v~~v~~~p~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~  324 (487)
                       ..-...+.++|+|++ .     ++++-+..+.|..||+.....+... +.+... .        .........+++..+
T Consensus       169 -~~~~~pNGi~~~~d~-d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-~~~~~~-~--------~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         169 -TAFQFPNGIAVRHMN-DGRPYQLIVAETPTKKLWSYDIKGPAKIENK-KVWGHI-P--------GTHEGGADGMDFDED  236 (314)
T ss_dssp             -EEESSEEEEEEEECT-TSCEEEEEEEETTTTEEEEEEEEETTEEEEE-EEEEEC-C--------CCSSCEEEEEEEBTT
T ss_pred             -CCcceeeeeEECCCC-CcceeEEEEEeecccceEEeeccCcccccee-eEEEEc-c--------ccccccceeeEEecC
Confidence             112234788999876 4     4445566788999987654322110 111110 0        001234568999999


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE-EEEEcCCCcEEEEEeCCC
Q 011368          325 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       325 ~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~sg~~dg~i~iwd~~~~  402 (487)
                      |++.++.. .+.|.+||.+. +..+..+..+....               ++++|.||++. .++.+.+|.|...++...
T Consensus       237 GnlyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~---------------t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CcEEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCE---------------EEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            99877764 49999999875 55555555443221               58999999974 566677888888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=2.2e-08  Score=90.80  Aligned_cols=177  Identities=8%  Similarity=-0.048  Sum_probs=98.2

Q ss_pred             CCCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe---CCCeEE
Q 011368          203 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVR  279 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~  279 (487)
                      ....+..|+++|++++|+++..+.+..|.+............      ........+.+++++ +.+....   ..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~p~~v~~~~~~-~~~~v~~a~~~~~~v~  110 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH------PIGGHPRANDADTNT-RAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE------ECCSSGGGGCTTSCC-EEEEEEECSSTTCCEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee------cCCCCcEEEEECCCC-CEEEEEEecCCCCEEE
Confidence            455567899999999999885567888888754443332211      111223456677777 5332222   234555


Q ss_pred             EEEccCCccccccceeeccc----ccccCccccccccccceeEEEEcCCCCEEEEEeC--CeEEEEeCCCCCceeee--e
Q 011368          280 LVDMRQSALCDHSARILRDA----AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVAT--F  351 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h----~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--~~i~iwd~~~~~~~~~~--~  351 (487)
                      .+.+.......   ..+...    ...+.. .........+.++.|+|||+++++++.  ..|.+|+....+.....  .
T Consensus       111 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~  186 (365)
T d1jofa_         111 ANPFYKFAGYG---NVFSVSETGKLEKNVQ-NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             EEEESSSCCEE---EEEEECTTCCEEEEEE-EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             EeEccCCCCcc---eeEeeeecceecCccc-CcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce
Confidence            54433211000   011000    000000 000011234789999999999998864  78999887653332211  1


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcEEEEEeCCCC
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS  403 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i~iwd~~~~~  403 (487)
                      .....             -...+.++|+|+++++.+.. .++.|.+|++..++
T Consensus       187 ~~~~~-------------g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         187 DAPDP-------------GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             ECSST-------------TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eecCC-------------CCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            11110             00125899999999886555 57899999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.2e-07  Score=81.81  Aligned_cols=219  Identities=14%  Similarity=0.101  Sum_probs=123.3

Q ss_pred             ccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-C
Q 011368          201 HAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R  275 (487)
Q Consensus       201 ~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d  275 (487)
                      ..+...+...+|||||+.||..  ..+  .+.+.+...... ..        +..+........|+|+| ..++.... +
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~spdg-~~i~~~~~~~  104 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQ--------VASFPRHNGAPAFSPDG-SKLAFALSKT  104 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EE--------EECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eE--------EeeeecccccceecCCC-CeeeEeeecC
Confidence            3445667889999999999875  333  455556653322 22        23456677889999999 76666554 4


Q ss_pred             CeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--C--CeEEEEeCCCCCceeeee
Q 011368          276 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATF  351 (487)
Q Consensus       276 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d--~~i~iwd~~~~~~~~~~~  351 (487)
                      +...++........  .......              ........++++++.++...  +  ..|.+.++..  .....+
T Consensus       105 ~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~~~  166 (269)
T d2hqsa1         105 GSLNLYVMDLASGQ--IRQVTDG--------------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRI  166 (269)
T ss_dssp             SSCEEEEEETTTCC--EEECCCC--------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEEC
T ss_pred             Cccceeeccccccc--ceeeeec--------------cccccccccccccccceecccccCCceEeeeeccc--ccceee
Confidence            43333333322111  0011111              23445567788877666543  2  3566666654  223333


Q ss_pred             ecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCC-CcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccc
Q 011368          352 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  430 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  430 (487)
                      ......               .....|+|+++.++..+.+ +...+|........ ..+..+........|+|  ||+. 
T Consensus       167 ~~~~~~---------------~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SP--DG~~-  227 (269)
T d2hqsa1         167 TWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAP--NGTM-  227 (269)
T ss_dssp             CCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECT--TSSE-
T ss_pred             eccccc---------------ccccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECC--CCCE-
Confidence            222221               1478999999998876654 44455554443332 33444555566777888  6665 


Q ss_pred             cccceeeecc-cce-ecC---CCCCccccccccCCCeEEEEEcCC
Q 011368          431 SLSNLTRGLY-RQA-HEN---SSSGHHELSYNLSSKLLHLAWHPT  470 (487)
Q Consensus       431 ~~~~l~~g~~-~~~-~~w---~~~~~~~~~~~~~~~v~~~~~spd  470 (487)
                          |+-.+. .+. .+|   ..+.....+......+...+|||-
T Consensus       228 ----i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         228 ----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ----EEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             ----EEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence                443332 333 554   233344455566677888999983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=7.4e-06  Score=72.13  Aligned_cols=205  Identities=16%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      .+..++|  .++|+++++-...+.|..|+..++.....                                          
T Consensus        41 ~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~------------------------------------------   76 (319)
T d2dg1a1          41 QLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRP------------------------------------------   76 (319)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEE------------------------------------------
T ss_pred             CcEeCEE--CCCCCEEEEECCCCEEEEEECCCCeEEEE------------------------------------------
Confidence            3568889  57888777777888888888776654332                                          


Q ss_pred             eeeeecccCCCceeEEEeCCCCCEEEEe-cC--C--eEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEE
Q 011368          195 ATKVYPHAHDFNINSISNNSDCETFVSA-DD--L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  269 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d--~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  269 (487)
                           ..........++++++|+++++. .+  .  .+...+... ........     -..-......+++.++| .+.
T Consensus        77 -----~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~-~~~~~~~~-----~~~~~~~~nd~~~d~~G-~l~  144 (319)
T d2dg1a1          77 -----FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIE-----DLSTAYCIDDMVFDSKG-GFY  144 (319)
T ss_dssp             -----EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEEC-----SSSSCCCEEEEEECTTS-CEE
T ss_pred             -----EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC-ceeeeecc-----CCCcccCCcceeEEecc-cee
Confidence                 12344567899999999988875 32  2  344444442 22222210     01112346789999999 766


Q ss_pred             EEEeC------CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeC
Q 011368          270 AYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDI  341 (487)
Q Consensus       270 ~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~  341 (487)
                      ++...      .+.+..++...+...    .....              -...+.++|+|+++.|..++  .+.|+.|++
T Consensus       145 vtd~~~~~~~~~g~v~~~~~dg~~~~----~~~~~--------------~~~pnGia~s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         145 FTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ecccccccccCcceeEEEecccceeE----EEeec--------------cceeeeeeeccccceEEEecccCCceEEEEE
Confidence            65432      123444444332211    11111              23457899999999877664  389999998


Q ss_pred             CCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCC
Q 011368          342 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  402 (487)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~  402 (487)
                      ..++..............        ......-.+++.++|++.++...++.|.+|+- .+
T Consensus       207 ~~~g~~~~~~~~~~~~~~--------~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYF--------TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             CTTSSSEEEEEEEEEEEC--------CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             cCCCceeccccceeeecc--------CCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC
Confidence            754433322211100000        00000137999999998888888899999995 45

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=1.1e-05  Score=69.58  Aligned_cols=201  Identities=9%  Similarity=0.078  Sum_probs=123.3

Q ss_pred             ceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccc
Q 011368          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      ....|++  +++++++++-..++.|++||.+ ++...........                                   
T Consensus        24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-----------------------------------   65 (279)
T d1q7fa_          24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------------------------------   65 (279)
T ss_dssp             CEEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------------------------------
T ss_pred             CccEEEE--cCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-----------------------------------
Confidence            4678998  6788888887788899999966 4333221100000                                   


Q ss_pred             eeeeecccCCCceeEEEeCCC-CCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEE
Q 011368          195 ATKVYPHAHDFNINSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  271 (487)
Q Consensus       195 ~~~~~~~~~~~~v~~i~~s~~-~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  271 (487)
                            .+....-..+++.++ +..+++.  .++.|..++..  +.....+.      .........+++.++| .++++
T Consensus        66 ------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~~~~~~------~~~~~~p~~~avd~~G-~i~v~  130 (279)
T d1q7fa_          66 ------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATILQHPRGVTVDNKG-RIIVV  130 (279)
T ss_dssp             ------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTCSCEEEEEECTTS-CEEEE
T ss_pred             ------cccccccccccccccccccceeccCCcccccccccc--ccceeecC------CCcccccceeccccCC-cEEEE
Confidence                  111222344554443 4455544  56677777765  33333321      1233457889999998 88888


Q ss_pred             EeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeee
Q 011368          272 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT  350 (487)
Q Consensus       272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~  350 (487)
                      ....+.+.+++.... ..    ..+..           ..+......+++.+++..+++... +.|++||..  ++.+..
T Consensus       131 ~~~~~~~~~~~~~g~-~~----~~~g~-----------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~  192 (279)
T d1q7fa_         131 ECKVMRVIIFDQNGN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQ  192 (279)
T ss_dssp             ETTTTEEEEECTTSC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEE
T ss_pred             eeccceeeEeccCCc-ee----ecccc-----------cccccccceeeeccceeEEeeeccccceeeeecC--Cceeee
Confidence            777788888876543 22    33322           112356788999999987777654 999999974  566666


Q ss_pred             eecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEe
Q 011368          351 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSH  399 (487)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~  399 (487)
                      +......             .....+++.++|+.+++-.. ++.|.+|+.
T Consensus       193 ~g~~g~~-------------~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         193 IGGEGIT-------------NYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             ESCTTTS-------------CSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ecccccc-------------cCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            5321111             01158999999997777554 456888874

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=1.1e-06  Score=75.15  Aligned_cols=230  Identities=7%  Similarity=-0.025  Sum_probs=131.6

Q ss_pred             CceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011368          205 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  282 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd  282 (487)
                      ..-..+++.++|+.+++.  ..+.+..++.........       ...+. .....+++++++ .++++....+.+++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~-~~p~gvav~~~g-~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGL-YQPQGLAVDGAG-TVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------CCCSC-CSCCCEEECTTC-CEEEEETTTEEEEECT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------ccCCc-cCceEEEEcCCC-CEEEeeeeeceeeeee
Confidence            345899999999987775  567777777663332211       11222 234678999998 8777766666666665


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCceeeeeeccccccccc
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  361 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~  361 (487)
                      ..+....    .....              ......+++.++++++++-.. ..+..++................+    
T Consensus        85 ~~~~~~~----~~~~~--------------~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----  142 (260)
T d1rwia_          85 GSNNQTV----LPFDG--------------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP----  142 (260)
T ss_dssp             TCSCCEE----CCCCS--------------CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC----
T ss_pred             eccceee----eeeee--------------eeecccccccccceeEeeccccccccccccccceeeeeeecccCCc----
Confidence            4443211    11111              245788999999987776543 677777765322112112222222    


Q ss_pred             ccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEeeCCccccccccceeeeccc
Q 011368          362 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  441 (487)
Q Consensus       362 ~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~g~~~  441 (487)
                                  ..++++++|+.+++...++.|..++....... ............+++.+  ++.+     .++....
T Consensus       143 ------------~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~--~g~l-----~vsd~~~  202 (260)
T d1rwia_         143 ------------DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDE--AGTV-----YVTEHNT  202 (260)
T ss_dssp             ------------CEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECT--TCCE-----EEEETTT
T ss_pred             ------------ceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeee--eeee-----eeeecCC
Confidence                        48999999998888888899999997754322 11112223334555554  4554     5555544


Q ss_pred             ce-ecCCCCCcccccc--ccCCCeEEEEEcCCCCEEEEec-CCeEEEE
Q 011368          442 QA-HENSSSGHHELSY--NLSSKLLHLAWHPTTNLIACAN-GNSLFFH  485 (487)
Q Consensus       442 ~~-~~w~~~~~~~~~~--~~~~~v~~~~~spd~~~la~~s-~~~~~i~  485 (487)
                      +. ..+..........  ..-.....|+++++|+++++-. .+.+..+
T Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            44 3332222222222  1223557999999998777655 3445544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.79  E-value=4.9e-06  Score=73.31  Aligned_cols=240  Identities=13%  Similarity=0.055  Sum_probs=131.1

Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccccccc
Q 011368           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (487)
Q Consensus        35 V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (487)
                      +-.++|.++|+++++-...+.|..|+.++++.                           ...+....            .
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~---------------------------~~~~~~~~------------~   82 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------KRPFVSHK------------A   82 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------EEEEECSS------------S
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeE---------------------------EEEEeCCC------------C
Confidence            46889999999777766888888887665532                           12222222            5


Q ss_pred             ceeEEEEEecCCCcEEEEEeCC--C--cEEEEEccccceeEeeec-CCCCceeeeeccccccccccccCCCCcceee--e
Q 011368          115 KINRVRWCAAPNGSMFILSTND--K--TIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGY--H  187 (487)
Q Consensus       115 ~I~~v~~~~~~~~~~l~s~~~d--~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  187 (487)
                      ....+++  .++|.++++...+  .  .+...+...+........ ........+.+ .+++.++............  .
T Consensus        83 ~p~gla~--~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~-d~~G~l~vtd~~~~~~~~~g~v  159 (319)
T d2dg1a1          83 NPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGV  159 (319)
T ss_dssp             SEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEE
T ss_pred             CeeEEEE--CCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeE-EeccceeecccccccccCccee
Confidence            5788999  6788877765432  2  344444444444333221 11111222333 3444444432221111111  1


Q ss_pred             eeeeccc-eeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecC
Q 011368          188 LEWTENM-ATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  264 (487)
Q Consensus       188 ~~~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  264 (487)
                      ..++... ..... ...-...+.++|+|+++.|+.+  ..+.|..|+++..+......................++++++
T Consensus       160 ~~~~~dg~~~~~~-~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~  238 (319)
T d2dg1a1         160 YYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD  238 (319)
T ss_dssp             EEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT
T ss_pred             EEEecccceeEEE-eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC
Confidence            1122111 11111 1223345789999999977665  788999999875443322111000001111223578999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEE
Q 011368          265 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  330 (487)
Q Consensus       265 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s  330 (487)
                      | ++.++....+.|.+||. .++.+    ..+..    |.   .-.++...+++++|.+++..++.
T Consensus       239 G-~l~Va~~~~g~V~~~~p-~G~~l----~~i~~----P~---~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         239 D-NLYVAMYGQGRVLVFNK-RGYPI----GQILI----PG---RDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             C-CEEEEEETTTEEEEECT-TSCEE----EEEEC----TT---GGGTCSCBCCEEEECTTSCEEEE
T ss_pred             C-CEEEEEcCCCEEEEECC-CCcEE----EEEeC----CC---cCCCcCceeeeEEEeCCCCEEEE
Confidence            9 88888888999999996 45533    22222    00   01123456789999998776654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.71  E-value=1.3e-05  Score=70.17  Aligned_cols=241  Identities=10%  Similarity=0.015  Sum_probs=131.8

Q ss_pred             CCCceeEEEeCCCCCEEEEe-c-------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC
Q 011368          203 HDFNINSISNNSDCETFVSA-D-------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  274 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  274 (487)
                      .-.....++|.++|+++++. .       +++|..||..+..... .. ..  ...........++|++++ ..++++..
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~-~~-~~--~~~~~~g~P~Gl~~~~dg-~~l~vad~   90 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-IC-KP--EVNGYGGIPAGCQCDRDA-NQLFVADM   90 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EE-CC--EETTEECCEEEEEECSSS-SEEEEEET
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEE-EE-CC--ccccCCCcceeEEEeCCC-CEEEEEEC
Confidence            34446778999999988874 2       4678888887443222 11 00  111122346789999999 88888887


Q ss_pred             CCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC----------------CeEEE
Q 011368          275 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------------MNLKL  338 (487)
Q Consensus       275 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d----------------~~i~i  338 (487)
                      .+.|..+|...+...     .......  ..      .-...+.+++.++|.+.++-..                |.|+.
T Consensus        91 ~~~i~~~~~~g~~~~-----~~~~~~~--g~------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~  157 (314)
T d1pjxa_          91 RLGLLVVQTDGTFEE-----IAKKDSE--GR------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             TTEEEEEETTSCEEE-----CCSBCTT--SC------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCeEEEEeCCCcEEE-----EEecccc--cc------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEE
Confidence            778888887765321     1111000  00      0124678999999998876321                23433


Q ss_pred             EeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCC-----EEEEEcCCCcEEEEEeCCCCceeE-----E
Q 011368          339 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-----HFATGSYSNLLRIFSHGVGSAGGI-----T  408 (487)
Q Consensus       339 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-----~l~sg~~dg~i~iwd~~~~~~~~~-----~  408 (487)
                      ++.  +++.......-..+                ..++|+|++.     +.++-+..+.|+.|++........     .
T Consensus       158 ~~~--dg~~~~~~~~~~~p----------------NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~  219 (314)
T d1pjxa_         158 FTT--DGQMIQVDTAFQFP----------------NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             ECT--TSCEEEEEEEESSE----------------EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             Eee--cCceeEeeCCccee----------------eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEE
Confidence            333  24433332221111                4789998764     455567788999999875433211     1


Q ss_pred             EeccC-CccccceEeeCCccccccccceeeecccce-ecCCC--CCccccccccCCCeEEEEEcCCCCEEEEec-C-CeE
Q 011368          409 VEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-G-NSL  482 (487)
Q Consensus       409 ~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~w~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~s-~-~~~  482 (487)
                      +.... ..-..+++.  .++.+     .++....+. ..+..  +.............++++|.||++.|.+.+ . +.+
T Consensus       220 ~~~~~~~~pdGiavD--~~Gnl-----yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         220 IPGTHEGGADGMDFD--EDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             CCCCSSCEEEEEEEB--TTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ccccccccceeeEEe--cCCcE-----EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcE
Confidence            11111 011123332  24444     444433343 55532  222222333456788999999998665544 3 346


Q ss_pred             EEEe
Q 011368          483 FFHY  486 (487)
Q Consensus       483 ~i~~  486 (487)
                      +.+.
T Consensus       293 ~~~~  296 (314)
T d1pjxa_         293 WKFE  296 (314)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=1.7e-06  Score=74.69  Aligned_cols=71  Identities=15%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             EEcCC--CCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccce
Q 011368           39 EFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (487)
Q Consensus        39 ~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~I  116 (487)
                      ..|||  |+.+|-.+ +|.|.+.|+.+++.                            ..+..+.            +.+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~----------------------------~~Lt~~~------------~~~   43 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST----------------------------RKIVSNL------------GVI   43 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE----------------------------EEEECSS------------SEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE----------------------------EEEecCC------------Ccc
Confidence            35788  99888764 46788888887753                            3344444            667


Q ss_pred             eEEEEEecCCCcEEEEEeC-CC-----cEEEEEccccceeEe
Q 011368          117 NRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKI  152 (487)
Q Consensus       117 ~~v~~~~~~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~  152 (487)
                      ...+|  +|||+.|+.... ++     .|.+++..+++...+
T Consensus        44 ~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          44 NNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCEEE--CCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            88899  689999986542 22     366667777765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=0.00023  Score=61.34  Aligned_cols=227  Identities=10%  Similarity=0.026  Sum_probs=137.2

Q ss_pred             EEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccccc
Q 011368           37 AIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (487)
Q Consensus        37 ~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (487)
                      +..|++....|.-.+ ..+.|..||.++++.                            ..+. ..            ..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----------------------------~~~~-~~------------~~   60 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP------------FM   60 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS------------SC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE----------------------------EEEE-CC------------CC
Confidence            456877554444443 667888888777642                            1121 11            55


Q ss_pred             eeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccce
Q 011368          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      +.++++.  +++.++++ +.+ .+.++|..+++...+.....                                      
T Consensus        61 ~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~--------------------------------------   98 (295)
T d2ghsa1          61 GSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHAELES--------------------------------------   98 (295)
T ss_dssp             EEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEECSST--------------------------------------
T ss_pred             cEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEeeeec--------------------------------------
Confidence            7888884  56665554 454 58889999887654421110                                      


Q ss_pred             eeeecccCCCceeEEEeCCCCCEEEEe-c----CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          196 TKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       196 ~~~~~~~~~~~v~~i~~s~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                           ......++++.+.|+|++.++. .    .+.-.+|.+.. +....+.        ..-.....++|++++..+++
T Consensus        99 -----~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~--------~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          99 -----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTKLF--------ADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             -----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEEEE--------EEESSEEEEEECTTSCEEEE
T ss_pred             -----CCCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEEEEe--------eccCCcceeeecCCCceEEE
Confidence                 1223457889999999988875 3    23446666663 3333221        11223578999999833445


Q ss_pred             EEeCCCeEEEEEccCCccc-cccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCcee
Q 011368          271 YSSSRGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  348 (487)
Q Consensus       271 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~  348 (487)
                      +-+..+.|..|++...... ......+..          +.+..+....+++..+|.+.++.- .+.|..||..  ++.+
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~----------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~  232 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHI  232 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEE
T ss_pred             eecccceeeEeeecccccccccceEEEec----------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEe
Confidence            5556788998887543211 111111111          112235678899999998777764 4889999963  7788


Q ss_pred             eeeecccccccccccccCCCCcceeeEEEEc-CCCCEEEE
Q 011368          349 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFAT  387 (487)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~s  387 (487)
                      ..+.......               ++++|- ||.+.|+.
T Consensus       233 ~~i~lP~~~~---------------T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         233 ARYEVPGKQT---------------TCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEECSCSBE---------------EEEEEESTTSCEEEE
T ss_pred             eEecCCCCce---------------EEEEEeCCCCCEEEE
Confidence            8877654322               689996 67666553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.00032  Score=60.44  Aligned_cols=182  Identities=13%  Similarity=0.114  Sum_probs=111.2

Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC----CCeEE
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVR  279 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~  279 (487)
                      ...+.++++.+++++++++.+ .+.++|..++. ...+.+..   -......+..+.+.|+| .+.++...    .+.-.
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~-~~~l~~~~---~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDD-GLFLRDTATGV-LTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETT-EEEEEETTTCC-EEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEE
T ss_pred             CCCcEEEEEecCCCEEEEEeC-ccEEeecccce-eeEEeeee---cCCCcccceeeEECCCC-CEEEEecccccccccee
Confidence            445778999889888776654 58889988443 33322111   11123357889999999 76665443    23445


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe-C-CeEEEEeCCCCCce----eeeeec
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTP----VATFKI  353 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-d-~~i~iwd~~~~~~~----~~~~~~  353 (487)
                      +|.+..++..    ..+..              -..-+.++|+++++.+...+ . +.|+.|++......    ...+..
T Consensus       132 l~~~~~g~~~----~~~~~--------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         132 IYHVAKGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             EEEEETTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             EeeecCCcEE----EEeec--------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec
Confidence            6666665432    22222              23457899999999877664 3 89999987532111    111110


Q ss_pred             ccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEee
Q 011368          354 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  423 (487)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  423 (487)
                      ....          ..  ..-.+++..+|.+.++.-..+.|..||. .+ +....+......+++++|-.
T Consensus       194 ~~~~----------~g--~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G-~~~~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         194 STGI----------KG--GMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             CTTS----------SS--EEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEES
T ss_pred             cCcc----------cc--cccceEEcCCCCEEeeeeCCCceEEecC-CC-cEeeEecCCCCceEEEEEeC
Confidence            0000          00  1147999999998877767788999995 44 44566666556677778864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.9e-06  Score=75.93  Aligned_cols=169  Identities=17%  Similarity=0.148  Sum_probs=101.7

Q ss_pred             EEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC---------CCeEEE
Q 011368          210 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVRL  280 (487)
Q Consensus       210 i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~i  280 (487)
                      ..|.+++.++....+|.|.+||+.++.. ..+++.  ..+.  ...+....|+|++ ++++....         .+.+.+
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~-~~l~~~--~~~~--~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTS-TVLIEG--KKIE--SLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCC-EEEECT--TTTT--TTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCE-EEEEcC--cccc--ccccceeEECCCC-CeEEEEEcccceeEeeccccEEE
Confidence            3588888776555788999999986544 333321  1222  2245677899999 87777643         567899


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeee-ccccccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRP  359 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~  359 (487)
                      +|+.++...     .+..          .......+....|||||+.||-..++.|.+.+... +..++... +....+.
T Consensus        96 ~d~~~~~~~-----~l~~----------~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~lt~~g~~~~i~  159 (465)
T d1xfda1          96 SKIPHGDPQ-----SLDP----------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIY  159 (465)
T ss_dssp             EESSSCCCE-----ECCC----------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEE
T ss_pred             EEccCCcee-----eccC----------ccCCccccceeeeccCCceEEEEecceEEEEecCC-CceEEEecccCcceee
Confidence            999987632     1211          00112456678999999999988889999999875 44433332 2111110


Q ss_pred             -cccc-ccCCCCcceeeEEEEcCCCCEEEEEcC-CCcEEEEEeC
Q 011368          360 -KLCD-LYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  400 (487)
Q Consensus       360 -~~~~-~~~~~~~~~~~~~~~s~d~~~l~sg~~-dg~i~iwd~~  400 (487)
                       ...+ .++.+....-.++-|||||++||.... +..+..+.+.
T Consensus       160 nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             ccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence             0000 111111101146789999999998763 4556666554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.35  E-value=5.6e-05  Score=64.71  Aligned_cols=100  Identities=16%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             EeCCC--CCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-CC-----eEEEEE
Q 011368          211 SNNSD--CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG-----FVRLVD  282 (487)
Q Consensus       211 ~~s~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg-----~i~iwd  282 (487)
                      ..+|+  |+.++...++.|.+.|+. ++...++        ..+...+...+|+|+| +.||.... ++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~-~g~~~~L--------t~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLK-SGSTRKI--------VSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETT-TCCEEEE--------ECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECC-CCCEEEE--------ecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEE
Confidence            35688  999888767789888998 4444332        3455678889999999 88876543 22     366677


Q ss_pred             ccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE
Q 011368          283 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  331 (487)
Q Consensus       283 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~  331 (487)
                      ..+++..     .+..+...      ............|+|+|+.|+..
T Consensus        75 ~~~g~~~-----~lt~~~~~------~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          75 GENGEIK-----RITYFSGK------STGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             TTTTEEE-----ECCCCCEE------EETTEECSEEEEECTTCCEEEEE
T ss_pred             ecCCceE-----EeeecCCC------ccCccccccccccCCCCCEEEEE
Confidence            7666532     11110000      00112345778999999998864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=0.0055  Score=51.27  Aligned_cols=216  Identities=9%  Similarity=-0.034  Sum_probs=122.7

Q ss_pred             cceeEEEEEecCCCcEEEE-EeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ..+..|+|.  ..++.+.- -..++.|+..++.++....+                                        
T Consensus        36 ~~~~~ld~D--~~~~~iywsd~~~~~I~~~~l~g~~~~~v----------------------------------------   73 (263)
T d1npea_          36 KVIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTI----------------------------------------   73 (263)
T ss_dssp             EEEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEE----------------------------------------
T ss_pred             CcEEEEEEE--eCCCEEEEEECCCCeEEEEEcccCCcEEE----------------------------------------
Confidence            457788885  33444444 45667788888776554333                                        


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEE
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  270 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  270 (487)
                             +......+.++++..-+..|+.+  ..+.|...+++.. ....++       ......+..++++|.. .+++
T Consensus        74 -------~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~-~~~~l~-------~~~l~~p~~l~vdp~~-g~ly  137 (263)
T d1npea_          74 -------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLF-------DTGLVNPRGIVTDPVR-GNLY  137 (263)
T ss_dssp             -------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE-------CSSCSSEEEEEEETTT-TEEE
T ss_pred             -------EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc-eEEEEe-------cccccCCcEEEEeccc-CcEE
Confidence                   12233457888887766666655  7789999999843 322222       1223457899999987 5665


Q ss_pred             EEeCC-CeEEEE--EccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCC
Q 011368          271 YSSSR-GFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS  345 (487)
Q Consensus       271 ~~~~d-g~i~iw--d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~  345 (487)
                      ..... +..+|+  ++......    .....             .-.....+++.+.++.|..++  .+.|...++.. .
T Consensus       138 ~t~~~~~~~~I~r~~~dG~~~~----~i~~~-------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-~  199 (263)
T d1npea_         138 WTDWNRDNPKIETSHMDGTNRR----ILAQD-------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-P  199 (263)
T ss_dssp             EEECCSSSCEEEEEETTSCCCE----EEECT-------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-E
T ss_pred             EeecCCCCcEEEEecCCCCCce----eeeee-------------cccccceEEEeecCcEEEEEeCCCCEEEEEECCC-C
Confidence            54332 233344  44432211    11111             024567899998888777664  38899999863 3


Q ss_pred             ceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEeccCCccccceEe
Q 011368          346 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  422 (487)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  422 (487)
                      .....+.+...+                .++++. ++....+-...+.|...|..+++.....++........+.+.
T Consensus       200 ~~~~v~~~~~~P----------------~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         200 GRRKVLEGLQYP----------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEEEEEECCCSE----------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             CeEEEECCCCCc----------------EEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence            333333332222                377775 343444445668888889887754333333333333344433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.57  E-value=0.01  Score=52.07  Aligned_cols=164  Identities=12%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             EEEeC---CCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEe--cCCCCEEEEEeCCC-----
Q 011368          209 SISNN---SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRG-----  276 (487)
Q Consensus       209 ~i~~s---~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg-----  276 (487)
                      .+++.   +||++++..  .+.+|-+-|++ ..++.+++.++      ....+..+...  |.. .+++..+.+.     
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~-~fkt~kIi~iP------n~~~~HG~r~~~~p~T-~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECc-ceeeeEEEecC------CCCCCceeecccCCCe-EEEEccCccccccCC
Confidence            45554   389999887  78999999999 44565655332      22334555554  444 5666665532     


Q ss_pred             -------------eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC---C------
Q 011368          277 -------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---M------  334 (487)
Q Consensus       277 -------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d---~------  334 (487)
                                   .+..+|..+.+..    .....              ......+.++++|+++++.+.   .      
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~----~QV~V--------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e  222 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPE  222 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred             CCccccchhhcceEEEEEecCCceEE----EEeee--------------CCChhccccCCCCCEEEEEeccccCCcchhh
Confidence                         3556777765533    11111              235678899999999987542   1      


Q ss_pred             -------eEEEEeCCCC------C-----ceeeeeecccccc-cccccccCCCCcceeeEEEEcCCCCEEEEEc-CCCcE
Q 011368          335 -------NLKLWDIRMD------S-----TPVATFKIHEHLR-PKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLL  394 (487)
Q Consensus       335 -------~i~iwd~~~~------~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~-~dg~i  394 (487)
                             .+.+++....      +     .-+..+....... ..+.-+....   ....+.++|||+++++++ -+.++
T Consensus       223 ~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpK---sPHGV~vSPDGKyi~VaGKLs~tV  299 (459)
T d1fwxa2         223 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTV  299 (459)
T ss_dssp             HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBE
T ss_pred             cccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCC---CCCceEECCCCCEEEEeCCcCCcE
Confidence                   2334443100      0     0001111110000 0000000000   114799999999987665 57899


Q ss_pred             EEEEeCC
Q 011368          395 RIFSHGV  401 (487)
Q Consensus       395 ~iwd~~~  401 (487)
                      .|+|++.
T Consensus       300 SViD~~K  306 (459)
T d1fwxa2         300 TVLDVTR  306 (459)
T ss_dssp             EEEEGGG
T ss_pred             EEEEehh
Confidence            9999974

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.072  Score=44.14  Aligned_cols=204  Identities=12%  Similarity=0.111  Sum_probs=118.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCccccccccc
Q 011368           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (487)
Q Consensus        32 ~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (487)
                      ...+.+|+|.+.++.|.-.. .++.|+..++++....                           ..+....         
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~---------------------------~v~~~~~---------   78 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL---------   78 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC---------
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE---------------------------EEEEecc---------
Confidence            34577899998887777665 5567877777655421                           1122222         


Q ss_pred             ccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       111 ~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                         ..+..+++.. ..+.+..+-...+.|.+.+++......+                                      
T Consensus        79 ---~~p~~iAvD~-~~~~lY~~d~~~~~I~~~~~dg~~~~~l--------------------------------------  116 (263)
T d1npea_          79 ---GSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRRVL--------------------------------------  116 (263)
T ss_dssp             ---CCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE--------------------------------------
T ss_pred             ---ccccEEEEec-cCCeEEEeccCCCEEEEEecCCceEEEE--------------------------------------
Confidence               4567888842 3344444555677888888876543222                                      


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe--cCCeEEEE--EccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                               ..........+++.|...+++..  ..+.-+|+  +++ +.....++       ...-.....+++++.+ 
T Consensus       117 ---------~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~~~i~-------~~~~~~P~glaiD~~~-  178 (263)
T d1npea_         117 ---------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILA-------QDNLGLPNGLTFDAFS-  178 (263)
T ss_dssp             ---------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEE-------CTTCSCEEEEEEETTT-
T ss_pred             ---------ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCceeee-------eecccccceEEEeecC-
Confidence                     12233557889998877666654  22333344  454 22222221       1222456899999887 


Q ss_pred             CEEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCC
Q 011368          267 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRM  343 (487)
Q Consensus       267 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~  343 (487)
                      ..|+.+ ...+.|...|+......    ..+.+              ......|++.  +.+|...+  .+.|...|..+
T Consensus       179 ~~lYw~d~~~~~I~~~~~~g~~~~----~v~~~--------------~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         179 SQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEeCCCCEEEEEECCCCCeE----EEECC--------------CCCcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence            666555 45778988888764421    22222              1223567765  44555543  38888888876


Q ss_pred             CCceeeeee
Q 011368          344 DSTPVATFK  352 (487)
Q Consensus       344 ~~~~~~~~~  352 (487)
                       ++.+..+.
T Consensus       239 -g~~~~~~~  246 (263)
T d1npea_         239 -SKEMDTFH  246 (263)
T ss_dssp             -TEEEEEEC
T ss_pred             -CccceEEC
Confidence             55555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.089  Score=43.56  Aligned_cols=204  Identities=13%  Similarity=0.111  Sum_probs=119.4

Q ss_pred             cCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeeccceeeeecccC
Q 011368          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKVYPHAH  203 (487)
Q Consensus       124 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (487)
                      .|..+.|+.-+ ..++.++|+++.+..+..                                                ..
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~------------------------------------------------~~  101 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAH------------------------------------------------TM  101 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEE------------------------------------------------EC
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceE------------------------------------------------Ec
Confidence            35566666655 568999999988765542                                                22


Q ss_pred             CCceeEEEeCCCCCEEEEecCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeC-------CC
Q 011368          204 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------RG  276 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg  276 (487)
                      ..+|.--.|-. .+.|+--.+..|+-|+++....+.++.+-. ..+  .+..|-.-..+++. ++++..+-       .|
T Consensus       102 ~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~P~k~fdR~-~~L--~~~QIInY~~d~~~-kW~~l~GI~~~~~~i~G  176 (327)
T d1utca2         102 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSL--AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVG  176 (327)
T ss_dssp             SSCCCEEEESS-SSEEEEECSSEEEEEESSSSCCCEEEEECC-GGG--TTCEEEEEEECTTS-CEEEEEEEEEETTEEEE
T ss_pred             CCCcEEEEecC-CCEEEEEcCCceEEEcccCCCCchhhhhhc-ccc--cCceEEEEEECCCC-CEEEEEeEecCCCceeE
Confidence            44566667763 456666667789999997555566554322 122  23457777778887 77766542       36


Q ss_pred             eEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCC---CEEEEEe---C-CeEEEEeCCCCCceee
Q 011368          277 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSRD---Y-MNLKLWDIRMDSTPVA  349 (487)
Q Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s~~---d-~~i~iwd~~~~~~~~~  349 (487)
                      .+.+|..+.+..     +.+++|             .+....+.+.-+.   ..++-+.   . +.+.|.++......-.
T Consensus       177 ~mQLYS~er~~s-----Q~ieGh-------------aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~  238 (327)
T d1utca2         177 AMQLYSVDRKVS-----QPIEGH-------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  238 (327)
T ss_dssp             EEEEEETTTTEE-----EEECCS-------------EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCC
T ss_pred             EEEEEEeccCcC-----ccccce-------------eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCC
Confidence            788888876542     566664             4444444333211   1222221   2 7888888865211111


Q ss_pred             eeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          350 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      .+......+. ..+...+|--   .++..|+.-..+..-+.-|.|++||++++.
T Consensus       239 ~f~kk~vdi~-fppea~~DFP---vamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         239 PFPKKAVDVF-FPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             CCCCEEEECC-CCTTCTTCCE---EEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             CCcceeEEEE-CCccccCCcE---EEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence            1100000000 0000111222   488899988889999999999999999993

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.81  E-value=0.1  Score=45.00  Aligned_cols=169  Identities=10%  Similarity=0.047  Sum_probs=92.8

Q ss_pred             ceeEEEeCCCCCEEEEe-c------------CCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE--ecCCCCEEE
Q 011368          206 NINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLA  270 (487)
Q Consensus       206 ~v~~i~~s~~~~~l~s~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~  270 (487)
                      ...+|...|+|..++++ .            .|.|.++|++........+...........-....+..  .++|..+|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            45578888998887775 2            38899999886554443332211111111112344443  345523455


Q ss_pred             EEe---CCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeC--------------
Q 011368          271 YSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--------------  333 (487)
Q Consensus       271 ~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d--------------  333 (487)
                      +..   ...+|.+|++...........++..            ......+++++..+|.++++-+-              
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~------------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~  183 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  183 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECC------------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHT
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCC------------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhh
Confidence            543   3567888888654322222222222            11245788999889988887310              


Q ss_pred             --CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEE-cCCCcEEEEEeCCCC
Q 011368          334 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGS  403 (487)
Q Consensus       334 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg-~~dg~i~iwd~~~~~  403 (487)
                        +...+|.... +........-..+                ..++++||+++|+.+ +..+.|++|++...+
T Consensus       184 ~~~~g~v~~~~~-~~~~~~~~~l~~p----------------NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         184 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             TCCCEEEEEECS-SCEEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cCCceeEEEEcC-CceEEEcCCCCcc----------------ceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence              1233443332 2222222221111                589999999877654 567899999997543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.12  Score=42.85  Aligned_cols=146  Identities=10%  Similarity=0.119  Sum_probs=97.4

Q ss_pred             CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccC
Q 011368          225 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  304 (487)
Q Consensus       225 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~  304 (487)
                      .+|.|-|+..+....+.           .-...+.-.+|.. +.||.-+ ...+.++|+++.+.+    +.+..      
T Consensus        45 ~~VvIidl~n~~~~~Rr-----------pi~AdsAIMhP~~-~IiALra-g~~LQiFnletK~kl----ks~~~------  101 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRR-----------PISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM------  101 (327)
T ss_dssp             EEEEEEETTSTTSCEEE-----------ECCCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC------
T ss_pred             ceEEEEECCCCCcceec-----------ccchhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhh----ceEEc------
Confidence            46778888754443321           1112345678987 7777776 668999999997654    44444      


Q ss_pred             ccccccccccceeEEEEcCCCCEEEEEeCCeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCE
Q 011368          305 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  384 (487)
Q Consensus       305 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  384 (487)
                              ...|.--.|-.+ +.|+--.+..|+=|++..+..+.+.+..|.....           ..+.....+++.++
T Consensus       102 --------~e~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~-----------~QIInY~~d~~~kW  161 (327)
T d1utca2         102 --------TDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQKW  161 (327)
T ss_dssp             --------SSCCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT-----------CEEEEEEECTTSCE
T ss_pred             --------CCCcEEEEecCC-CEEEEEcCCceEEEcccCCCCchhhhhhcccccC-----------ceEEEEEECCCCCE
Confidence                    346777778654 4566556679999999766678888887765321           12247778888888


Q ss_pred             EEEEc---C----CCcEEEEEeCCCCceeEEEeccCCc
Q 011368          385 FATGS---Y----SNLLRIFSHGVGSAGGITVEAGKNE  415 (487)
Q Consensus       385 l~sg~---~----dg~i~iwd~~~~~~~~~~~~~~~~~  415 (487)
                      ++..+   .    .|.+.+|..+.+  ..+.+++|...
T Consensus       162 ~~l~GI~~~~~~i~G~mQLYS~er~--~sQ~ieGhaa~  197 (327)
T d1utca2         162 LLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAAS  197 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEE
T ss_pred             EEEEeEecCCCceeEEEEEEEeccC--cCccccceeee
Confidence            76432   2    367899998854  67788888543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.56  E-value=0.19  Score=43.15  Aligned_cols=158  Identities=7%  Similarity=0.047  Sum_probs=83.2

Q ss_pred             CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEE--ecCCCC-EEEEEeCCCeEEEEEccC---Cccccccceeecc
Q 011368          225 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRD  298 (487)
Q Consensus       225 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~  298 (487)
                      .+|.+|.+......+..+.........-...++.+++  +|.... ++++...+|.+..|.+..   +......++.|..
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence            3688888874443333221111111111123566665  665324 456666789998887743   3333334455555


Q ss_pred             cccccCccccccccccceeEEEEcCCCCEEEEEeC-CeEEEEeCCCCCc----eeeeeecccccccccccccCCCCccee
Q 011368          299 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDK  373 (487)
Q Consensus       299 h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d-~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (487)
                                    ...+..|.+......|+.+.. ..|+.++......    .+....+ ....            -++
T Consensus       179 --------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l~------------~D~  231 (353)
T d1h6la_         179 --------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLT------------PDI  231 (353)
T ss_dssp             --------------SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSCC------------SCE
T ss_pred             --------------CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccC-cccc------------CCc
Confidence                          467899999999888888864 5566666542211    1111111 1111            122


Q ss_pred             eEEEEc--CCCC-EEE-EEcCCCcEEEEEeCCCCceeEEE
Q 011368          374 FECSVS--GDGL-HFA-TGSYSNLLRIFSHGVGSAGGITV  409 (487)
Q Consensus       374 ~~~~~s--~d~~-~l~-sg~~dg~i~iwd~~~~~~~~~~~  409 (487)
                      -.+++-  +++. ||+ +.-.+++..|||..+.....-.+
T Consensus       232 EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         232 EGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             cccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            355543  3333 544 44467899999998753333333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.42  E-value=0.26  Score=43.07  Aligned_cols=77  Identities=13%  Similarity=0.093  Sum_probs=49.6

Q ss_pred             CCCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCC-----
Q 011368          203 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----  275 (487)
Q Consensus       203 ~~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----  275 (487)
                      +.......++.+++++++.|  ....+.+||..+..  ....    ..+..... -.+++..++| ++++.++.+     
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~--w~~~----~~~~~~r~-~~~~~~~~dG-~v~v~GG~~~~~~~  145 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPG----PDMQVARG-YQSSATMSDG-RVFTIGGSWSGGVF  145 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEEC----CCCSSCCS-SCEEEECTTS-CEEEECCCCCSSSC
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCc--cccc----cccccccc-ccceeeecCC-ceeeeccccccccc
Confidence            33334566788999999998  45789999998432  2221    11222212 2356677888 888888753     


Q ss_pred             -CeEEEEEccCCc
Q 011368          276 -GFVRLVDMRQSA  287 (487)
Q Consensus       276 -g~i~iwd~~~~~  287 (487)
                       ..+.+||..+.+
T Consensus       146 ~~~v~~yd~~~~~  158 (387)
T d1k3ia3         146 EKNGEVYSPSSKT  158 (387)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceeeeecCCCCc
Confidence             368999998864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.35  E-value=0.29  Score=42.77  Aligned_cols=58  Identities=14%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             EEEEEecCCCcEEEEEeCC-CcEEEEEccccceeEeeecCCCCceeeeeccccccccccccC
Q 011368          118 RVRWCAAPNGSMFILSTND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (487)
Q Consensus       118 ~v~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                      ..++  .+++.+++.|+.+ ..+.+||..+.................. ....++.++..+.
T Consensus        80 ~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~-~~~~dG~v~v~GG  138 (387)
T d1k3ia3          80 GISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS-ATMSDGRVFTIGG  138 (387)
T ss_dssp             EEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEE-EECTTSCEEEECC
T ss_pred             EEEE--ecCCcEEEeecCCCcceeEecCccCcccccccccccccccce-eeecCCceeeecc
Confidence            4455  4788888887644 6899999998877655433332222222 2233555555554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.22  E-value=0.34  Score=42.33  Aligned_cols=76  Identities=11%  Similarity=0.115  Sum_probs=48.2

Q ss_pred             cceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCc-------eeeeeecccccccccccccCCCCcceeeEEEEcCCCCE
Q 011368          314 ASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST-------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  384 (487)
Q Consensus       314 ~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  384 (487)
                      .....+.++|||++++++.  +.++.++|++.-..       +...+.+..            +--.+....+|+..|.-
T Consensus       275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~------------elglgPLht~fd~~g~a  342 (459)
T d1fwxa2         275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP------------ELGLGPLHTAFDGRGNA  342 (459)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC------------BCCSCEEEEEECTTSEE
T ss_pred             CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec------------ccCcCccccccCCCceE
Confidence            3456789999999999875  49999999863111       111111100            00112247789888754


Q ss_pred             EEEEcCCCcEEEEEeCC
Q 011368          385 FATGSYSNLLRIFSHGV  401 (487)
Q Consensus       385 l~sg~~dg~i~iwd~~~  401 (487)
                      ..+---|..|.-|++..
T Consensus       343 ytslfids~v~kw~~~~  359 (459)
T d1fwxa2         343 YTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEETTTTEEEEEEHHH
T ss_pred             EEEeeccceEEEEecch
Confidence            45556899999999853

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.83  E-value=0.57  Score=41.66  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             cEEEEEEcCCCCEEEEEe-cC----CcEEEEEeeCCcC
Q 011368           34 IVSAIEFDKTGDYLAVGD-RG----GRVILFETVGGKN   66 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~-~d----g~i~iw~~~~~~~   66 (487)
                      .+...++|||++++|.+- .+    ..|++.|+.+++.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            345678899999988543 23    3689999998864

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.50  E-value=0.38  Score=37.27  Aligned_cols=155  Identities=11%  Similarity=0.126  Sum_probs=89.4

Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccccccc
Q 011368           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (487)
Q Consensus        34 ~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (487)
                      .|.+++.. +.+..++|+......+|-+++++..                .+...|.+.+++.+.+.             
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklr----------------kL~~vPpFsFVtDI~~d-------------  154 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLR----------------ELARLPGFGFVSDIRGD-------------  154 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEE----------------EEEEESSCEEEEEEETT-------------
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCcee----------------eeccCCCcceEEeccCC-------------
Confidence            34555543 3467778888888999999988752                34455666666666653             


Q ss_pred             cceeEEEEEecCCCcEEEEEeC-CCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeeeec
Q 011368          114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (487)
Q Consensus       114 ~~I~~v~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                       -|..+.+. .++..-|+++.- .|.+++++...|.                                            
T Consensus       155 -~I~G~g~~-~g~~~sfF~adl~SG~lri~tpkeGS--------------------------------------------  188 (313)
T d2hu7a1         155 -LIAGLGFF-GGGRVSLFTSNLSSGGLRVFDSGEGS--------------------------------------------  188 (313)
T ss_dssp             -EEEEEEEE-ETTEEEEEEEETTTEEEEEECCSSEE--------------------------------------------
T ss_pred             -eEEEEeee-cCCcceEEEEecccCCEEEecCCCCc--------------------------------------------
Confidence             36777765 233334555543 6666666555443                                            


Q ss_pred             cceeeeecccCCCceeEEEeCCCCCEEEEe--cCC--eEEEEEccCCCceeEEeecCCCCCCCC-CCcEEEEEEecCCCC
Q 011368          193 NMATKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCN  267 (487)
Q Consensus       193 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~  267 (487)
                                    ++.....+..+. ++.  .-+  ...-+|++.  ....-++.+...+... .-.|..+-+.|++ +
T Consensus       189 --------------~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s--~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd-~  250 (313)
T d2hu7a1         189 --------------FSSASISPGMKV-TAGLETAREARLVTVDPRD--GSVEDLELPSKDFSSYRPTAITWLGYLPDG-R  250 (313)
T ss_dssp             --------------EEEEEECTTSCE-EEEEEESSCEEEEEECTTT--CCEEECCCSSCHHHHHCCSEEEEEEECTTS-C
T ss_pred             --------------ccceeEccCcee-eeccCCCCceEEEEEeccc--CceeeeecCcccceeecceEEEeeeeCCCC-c
Confidence                          444444554443 443  122  222335552  2233322221112111 2357778899999 8


Q ss_pred             EEEEEeCCCeEEEEE
Q 011368          268 LLAYSSSRGFVRLVD  282 (487)
Q Consensus       268 ~l~~~~~dg~i~iwd  282 (487)
                      +++.+-.||.-++|.
T Consensus       251 L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         251 LAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEecCCchheee
Confidence            889999999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.68  Score=37.99  Aligned_cols=211  Identities=10%  Similarity=0.048  Sum_probs=114.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe-cCCcEEEEEeeCCcCCCCcccchhhhhccccccccCCCcceeEeeecCCCcccccccc
Q 011368           31 DVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (487)
Q Consensus        31 h~~~V~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (487)
                      ....+.+++|++.++.|.-.. ..+.|.--+++.....                       ......+....        
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~-----------------------~~~~~~~~~~~--------   76 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI--------   76 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC--------
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC-----------------------cceEEEEeCCC--------
Confidence            445678999999888777665 4555665555432210                       00011111111        


Q ss_pred             cccccceeEEEEEecCCCcEEEEEeCCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeee
Q 011368          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (487)
Q Consensus       110 ~~~~~~I~~v~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                          ..+..+++.+ ..+.+..+-...+.|.+.++.+......                                     
T Consensus        77 ----~~p~glAvD~-~~~~lY~~d~~~~~I~v~~~~g~~~~~~-------------------------------------  114 (266)
T d1ijqa1          77 ----QAPDGLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTL-------------------------------------  114 (266)
T ss_dssp             ----SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEE-------------------------------------
T ss_pred             ----CCcceEEEee-ccceEEEEecCCCEEEeEecCCceEEEE-------------------------------------
Confidence                3456777732 2344555556777899999876654332                                     


Q ss_pred             eeccceeeeecccCCCceeEEEeCCCCCEEEEe---cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCC
Q 011368          190 WTENMATKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  266 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  266 (487)
                                ..........++..|...+++..   ..+.|.-.+++ +.....++       ...-.....+++++.+ 
T Consensus       115 ----------~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~~~l~-------~~~~~~p~gl~iD~~~-  175 (266)
T d1ijqa1         115 ----------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLS-  175 (266)
T ss_dssp             ----------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CSSCSCEEEEEEETTT-
T ss_pred             ----------EcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC-CCceeccc-------ccccceeeEEEeeccc-
Confidence                      13334556788888865555543   34566666666 33333222       1223456889999987 


Q ss_pred             CEEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCC
Q 011368          267 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRM  343 (487)
Q Consensus       267 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~  343 (487)
                      ..|+.+ ...+.|...++......    ......           ........+++.  +.+|...+  .+.|...+..+
T Consensus       176 ~~lYw~d~~~~~I~~~~~dG~~~~----~~~~~~-----------~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         176 GRLYWVDSKLHSISSIDVNGGNRK----TILEDE-----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE----EEEECT-----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEecCCcCEEEEEECCCCCEE----EEEeCC-----------CcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence            656555 55688988888654321    122220           001234566666  34555443  37787777665


Q ss_pred             CCceeeee
Q 011368          344 DSTPVATF  351 (487)
Q Consensus       344 ~~~~~~~~  351 (487)
                       +.....+
T Consensus       239 -g~~~~~~  245 (266)
T d1ijqa1         239 -GSDVNLL  245 (266)
T ss_dssp             -CCCCEEE
T ss_pred             -CcceEEE
Confidence             4444433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.07  E-value=1.1  Score=40.02  Aligned_cols=60  Identities=13%  Similarity=0.051  Sum_probs=40.9

Q ss_pred             CCceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCC-CCCCCCcEEEEEEecC
Q 011368          204 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPI  264 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~  264 (487)
                      -..-++|+|.||++++++- ..|.|++++... +....+..+.... ...-......|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~-g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCC-CcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567799999999999998 689999998773 4333333322111 1222356889999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.93  Score=37.10  Aligned_cols=161  Identities=8%  Similarity=0.019  Sum_probs=93.9

Q ss_pred             CCceeEEEeCCCCCEEEEe--cCCeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEe--CCCeEE
Q 011368          204 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVR  279 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~  279 (487)
                      ...+..+++.+-++.|..+  ..+.|.+.+++ +......+       .........++++|.. .+|....  ..+.|.
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~~-------~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~  146 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK  146 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEEE-------cCCCCCcceEEEEccc-CeEEEeccCCCccee
Confidence            4456778887766666665  67899999998 33333222       2233557899999865 4555443  234566


Q ss_pred             EEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEe--CCeEEEEeCCCCCceeeeeeccccc
Q 011368          280 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  357 (487)
Q Consensus       280 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~  357 (487)
                      -.++......    .....             .-.....+++.+.++.|..++  .+.|...++.. .............
T Consensus       147 r~~~dGs~~~----~l~~~-------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~  208 (266)
T d1ijqa1         147 KGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRL  208 (266)
T ss_dssp             EEETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTT
T ss_pred             EeccCCCcee----ccccc-------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCcc
Confidence            6666543211    11111             124568899999888777764  38899889864 3322222222211


Q ss_pred             ccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCce
Q 011368          358 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  405 (487)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~  405 (487)
                      .             ...++++. ++....+-..++.|+..+..+++..
T Consensus       209 ~-------------~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         209 A-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             S-------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             c-------------ccEEEEEE-CCEEEEEECCCCeEEEEECCCCcce
Confidence            0             01367776 3334444456788888887777543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.46  E-value=1.8  Score=39.84  Aligned_cols=29  Identities=10%  Similarity=0.074  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCcEEEEEeCCCCceeEEEe
Q 011368          381 DGLHFATGSYSNLLRIFSHGVGSAGGITVE  410 (487)
Q Consensus       381 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  410 (487)
                      .+.++++|+.||.++.+|.++|+. +-+++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~-lW~~~  502 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKE-LWNFK  502 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcE-EEEEE
Confidence            456788899999999999999955 44443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.09  E-value=3  Score=35.30  Aligned_cols=103  Identities=8%  Similarity=-0.006  Sum_probs=57.9

Q ss_pred             CCceeEEEeCCCCCEEEEe----cC------------CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCC
Q 011368          204 DFNINSISNNSDCETFVSA----DD------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  267 (487)
Q Consensus       204 ~~~v~~i~~s~~~~~l~s~----~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  267 (487)
                      ....+++.+..++.+++|-    .+            +...+|..+. +......        ..-.....++++|++ +
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-~~~~~~~--------~~l~~pNGI~~s~d~-~  218 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVA--------EGFDFANGINISPDG-K  218 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-SCEEEEE--------EEESSEEEEEECTTS-S
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-CceEEEc--------CCCCccceeEECCCC-C
Confidence            3456788888888888872    11            2334444442 2221111        122356899999998 6


Q ss_pred             EEEEE-eCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcC-CCCEEEEE
Q 011368          268 LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR  331 (487)
Q Consensus       268 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~  331 (487)
                      +|+++ +..+.|+.|++....... .......              ......+.+.+ +|.+.+++
T Consensus       219 ~lyVa~t~~~~i~~y~~~~~~~l~-~~~~~~l--------------~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         219 YVYIAELLAHKIHVYEKHANWTLT-PLRVLSF--------------DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEE-EEEEEEC--------------SSEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEeCCCCeEEEEEeCCCcccc-eEEEecC--------------CCCCCccEEecCCCEEEEEE
Confidence            55555 567899999987543221 1111111              24567777765 45555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.38  E-value=4.4  Score=35.81  Aligned_cols=33  Identities=9%  Similarity=0.192  Sum_probs=26.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCcEEEEEeeCCc
Q 011368           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (487)
Q Consensus        33 ~~V~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~   65 (487)
                      +..++|+|.|||++|++--.+|.|++++..+++
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            467899999999988877557999988766654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.86  E-value=4.8  Score=35.27  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             eeEEEEEecCCCcEEEEEe-----CCCcEEEEEccccceeEeeecCCCCceeeeeccccccccccccCCCCcceeeeeee
Q 011368          116 INRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (487)
Q Consensus       116 I~~v~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      .....|+++|++++++.+-     ....+++.|+.+++.....                                     
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-------------------------------------  167 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------------------------------------  167 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-------------------------------------
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-------------------------------------
Confidence            3434456689999988642     3347999999999865431                                     


Q ss_pred             eccceeeeecccCCCceeEEEeCCCCCEEEEe-cC----------------CeEEEEEccCCCceeEEeecCCCCCCCCC
Q 011368          191 TENMATKVYPHAHDFNINSISNNSDCETFVSA-DD----------------LRINLWNLEISDQCFNIVDMKPSNMDDLT  253 (487)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  253 (487)
                               +.  ......++|.+|++.|+.. .+                ..|..+.+.+....-.++-    ......
T Consensus       168 ---------i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~----~e~d~~  232 (430)
T d1qfma1         168 ---------LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA----EFPDEP  232 (430)
T ss_dssp             ---------EE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE----CCTTCT
T ss_pred             ---------cc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccc----ccccCC
Confidence                     01  1112468899999887654 32                2577777775433222220    111122


Q ss_pred             CcEEEEEEecCCCCEEEEE
Q 011368          254 EVITSAEFHPIYCNLLAYS  272 (487)
Q Consensus       254 ~~v~~v~~~p~~~~~l~~~  272 (487)
                      ..+..+..++++ ++++..
T Consensus       233 ~~~~~~~~s~d~-~~l~i~  250 (430)
T d1qfma1         233 KWMGGAELSDDG-RYVLLS  250 (430)
T ss_dssp             TCEEEEEECTTS-CEEEEE
T ss_pred             ceEEeeeccCCc-ceeeEE
Confidence            346677788888 666543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.59  E-value=3.5  Score=31.76  Aligned_cols=154  Identities=14%  Similarity=0.065  Sum_probs=83.7

Q ss_pred             CceeEEEeCCCCCEEEEe-cCCeEEEEEccCCCceeEEeecCCCCCCC--CCCcEEEEEEecCCCCEEEEEeC-CCeEEE
Q 011368          205 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCNLLAYSSS-RGFVRL  280 (487)
Q Consensus       205 ~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~-dg~i~i  280 (487)
                      -+|.+++.. +.+..++| ......+|-++ +++..++.++++..+..  ..+.|..+.+-.-++.-+.++.- .|.+++
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            445666665 45566777 77788899888 66666665555433211  12234444443333234444444 566666


Q ss_pred             EEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEE-eC-C--eEEEEeCCCCCceeeeeecccc
Q 011368          281 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-M--NLKLWDIRMDSTPVATFKIHEH  356 (487)
Q Consensus       281 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~  356 (487)
                      ++...                            +.++...+++..+. +++ .. |  ...-+|++. + ....+.....
T Consensus       182 ~tpke----------------------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s-~-~yerve~P~k  230 (313)
T d2hu7a1         182 FDSGE----------------------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRD-G-SVEDLELPSK  230 (313)
T ss_dssp             ECCSS----------------------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTT-C-CEEECCCSSC
T ss_pred             ecCCC----------------------------CcccceeEccCcee-eeccCCCCceEEEEEeccc-C-ceeeeecCcc
Confidence            65443                            45677777776665 443 21 2  222457764 2 2222222211


Q ss_pred             cccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 011368          357 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  398 (487)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd  398 (487)
                      ....    |   .-..++=+-+.|++++++.+-.||.-+++.
T Consensus       231 d~~s----y---~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         231 DFSS----Y---RPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             HHHH----H---CCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ccee----e---cceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            0000    0   000112355899999989999999999987

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.37  E-value=7.8  Score=35.41  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             CEEEEEeCCCeEEEEEccCCccc
Q 011368          267 NLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       267 ~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      .++++++.||.++-+|.++++.+
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEE
Confidence            57778999999999999999854

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.26  E-value=5.6  Score=33.63  Aligned_cols=132  Identities=11%  Similarity=0.158  Sum_probs=74.8

Q ss_pred             ceeEEEe--CCC-CCE-EEEe-cCCeEEEEEccCCCc---eeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCe
Q 011368          206 NINSISN--NSD-CET-FVSA-DDLRINLWNLEISDQ---CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  277 (487)
Q Consensus       206 ~v~~i~~--s~~-~~~-l~s~-~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  277 (487)
                      .++.+|+  ++. +.. ++.. .+|.+..|.+...+.   ....+    +++ .-...+..+.+++.. ..|+.+-++..
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv----r~f-~~~~q~EGCVvDde~-~~LyisEE~~G  202 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV----RAF-KMNSQTEGMAADDEY-GSLYIAEEDEA  202 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE----EEE-ECSSCEEEEEEETTT-TEEEEEETTTE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee----ecc-CCCCccceEEEeCCC-CcEEEecCccc
Confidence            4677776  664 544 3445 889999887753221   11111    111 223468889999988 88999988877


Q ss_pred             EEEEEccCCccccccceeecccccccCccccccccccceeEEEEc--CCCC-EEEEEe--CCeEEEEeCCCCCceeeeee
Q 011368          278 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--NDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFK  352 (487)
Q Consensus       278 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s--~~~~-~l~s~~--d~~i~iwd~~~~~~~~~~~~  352 (487)
                      |..++.........  ..... ..       -......+..++.-  .+++ ||++.+  +++..+||.......+..|+
T Consensus       203 iw~~~a~~~~~~~~--~~i~~-~~-------g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         203 IWKFSAEPDGGSNG--TVIDR-AD-------GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEESSTTSCSCC--EEEEE-CS-------SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             eEEEEeccCCCccc--eeeec-cc-------CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            76666543211100  11110 00       00123466777653  3333 666553  59999999986556666665


Q ss_pred             c
Q 011368          353 I  353 (487)
Q Consensus       353 ~  353 (487)
                      .
T Consensus       273 i  273 (353)
T d1h6la_         273 I  273 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.67  E-value=3.4  Score=38.02  Aligned_cols=25  Identities=8%  Similarity=-0.023  Sum_probs=21.5

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCccc
Q 011368          264 IYCNLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       264 ~~~~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      .+ .++++|+.||.++.+|.++++.+
T Consensus       487 ag-glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         487 AG-NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             TT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cC-CEEEEECCCCeEEEEECCCCcEe
Confidence            45 67888999999999999999855

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.28  E-value=3.1  Score=38.31  Aligned_cols=61  Identities=13%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             CeEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCCceeEEEecc
Q 011368          334 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  412 (487)
Q Consensus       334 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  412 (487)
                      |.+.-||+.+ ++.+...+......                .-..+-.|.++++|+.||.++.+|.++|+. +-+++..
T Consensus       457 G~l~AiD~~t-Gk~~W~~~~~~p~~----------------gg~lstagglVF~G~~dg~l~A~Da~TGe~-LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVA-QKAAWSVEHVSPWN----------------GGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTG  517 (573)
T ss_dssp             EEEEEEETTT-TEEEEEEEESSSCC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred             ccEEEeCCCC-CceEeeecCCCCCC----------------CceEEEcCCEEEEECCCCeEEEEECCCCcE-eEEEECC
Confidence            6788899887 77777665443211                112233677888999999999999999955 4444443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.46  E-value=10  Score=34.47  Aligned_cols=55  Identities=7%  Similarity=0.082  Sum_probs=34.2

Q ss_pred             CeEEEEEccCCCceeEEeecCCCCCCCCCCcEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccc
Q 011368          225 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  289 (487)
Q Consensus       225 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  289 (487)
                      |.|.-||+.+++...+.-      +..+.   .+-...-.+ .++++++.||.++-+|.++++.+
T Consensus       438 G~l~A~D~~tGk~~W~~~------~~~~~---~gg~l~Tag-glVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVP------YPTHW---NGGTLSTAG-NLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEE------ESSSC---CCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeecc------CCCCC---CCceeEECC-CEEEEECCCCcEEEEECCCCcEe
Confidence            567777887655544431      11111   111123345 67778999999999999999855

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.62  E-value=12  Score=34.34  Aligned_cols=30  Identities=13%  Similarity=0.099  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCcEEEEEeCCCCceeEEEec
Q 011368          381 DGLHFATGSYSNLLRIFSHGVGSAGGITVEA  411 (487)
Q Consensus       381 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  411 (487)
                      .|.+++.|+.||.++.+|.++|+. +-+++.
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~-LW~~~~  512 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDL-LWKFKI  512 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCE-EEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcE-eeEEEC
Confidence            567888899999999999999955 444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=13  Score=31.59  Aligned_cols=119  Identities=12%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             cEEEEEEecCCCCEEEEEeCCCeEEEEEccCCccccccceeecccccccCccccccccccceeEEEEcCCCCEEEEEeCC
Q 011368          255 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  334 (487)
Q Consensus       255 ~v~~v~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~d~  334 (487)
                      ...-++.++.. .++++|+.++ +.|..+..-+      ..++. ..... .......-..|..++|+.|  .|+...++
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~------~~~~~-~~~~~-~~~~~~~ip~v~~vafs~d--~l~v~~~~  105 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLR------DHITS-DSTPL-TFKWEKEIPDVIFVCFHGD--QVLVSTRN  105 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHH------HHHHS-SSCCC-CCSEEEECTTEEEEEEETT--EEEEEESS
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHH------HHhhc-cCCCC-cceeccCCCCeEEEEeeCC--EEEEEeCC
Confidence            34567888876 6787777775 6676654321      11110 00000 0000011235888999744  57666667


Q ss_pred             eEEEEeCCCCCceeeeeecccccccccccccCCCCcceeeEEEEcCCCCEEEEEcCCCcEEEEEeCCCC
Q 011368          335 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  403 (487)
Q Consensus       335 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~sg~~dg~i~iwd~~~~~  403 (487)
                      .+..++... -.............               .++.+.|.  .++....+|.+.++++.+++
T Consensus       106 ~l~~~~~~~-l~~~~~~~~~~~~~---------------~~~~~~p~--~~~l~~~~~~~~~~~l~~~~  156 (381)
T d1xipa_         106 ALYSLDLEE-LSEFRTVTSFEKPV---------------FQLKNVNN--TLVILNSVNDLSALDLRTKS  156 (381)
T ss_dssp             EEEEEESSS-TTCEEEEEECSSCE---------------EEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEeec-cccccccccccccc---------------cceecCCc--eeEEEecCCCEEEEEeccCc
Confidence            888888765 22222222221111               46777664  56667778899999998774